Query 027685
Match_columns 220
No_of_seqs 272 out of 2469
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 13:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.9 3.2E-21 7E-26 152.0 15.4 81 34-129 7-87 (195)
2 KOG4207 Predicted splicing fac 99.9 1.4E-20 3.1E-25 151.9 14.5 84 35-128 11-94 (256)
3 PLN03134 glycine-rich RNA-bind 99.8 7.9E-20 1.7E-24 143.3 15.5 98 23-130 20-117 (144)
4 KOG0113 U1 small nuclear ribon 99.8 3.1E-17 6.7E-22 138.9 14.9 87 35-131 99-185 (335)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5E-17 1.1E-21 143.7 12.5 82 37-128 269-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.7E-17 1.5E-21 142.9 11.0 83 36-128 2-84 (352)
7 TIGR01659 sex-lethal sex-letha 99.7 7.2E-17 1.6E-21 143.2 10.8 84 34-127 104-187 (346)
8 PF00076 RRM_1: RNA recognitio 99.7 1.8E-16 3.8E-21 107.7 9.2 70 40-120 1-70 (70)
9 KOG0122 Translation initiation 99.7 2.6E-16 5.7E-21 130.1 10.3 87 31-127 183-269 (270)
10 TIGR01659 sex-lethal sex-letha 99.6 1.7E-15 3.6E-20 134.5 12.7 84 36-129 192-277 (346)
11 KOG0130 RNA-binding protein RB 99.6 5.6E-16 1.2E-20 117.8 7.8 82 37-128 72-153 (170)
12 KOG0121 Nuclear cap-binding pr 99.6 6E-16 1.3E-20 116.7 6.8 82 35-126 34-115 (153)
13 PF14259 RRM_6: RNA recognitio 99.6 4.3E-15 9.4E-20 101.6 9.6 70 40-120 1-70 (70)
14 TIGR01622 SF-CC1 splicing fact 99.6 6.6E-15 1.4E-19 134.7 13.3 79 37-126 89-167 (457)
15 KOG0149 Predicted RNA-binding 99.6 1.4E-15 3.1E-20 125.2 6.5 82 34-126 9-90 (247)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.6 9E-15 1.9E-19 135.5 11.6 83 35-127 293-375 (509)
17 TIGR01622 SF-CC1 splicing fact 99.6 1.1E-14 2.3E-19 133.3 11.2 81 37-127 186-266 (457)
18 PLN03120 nucleic acid binding 99.6 1.6E-14 3.5E-19 122.0 10.5 77 37-127 4-80 (260)
19 smart00362 RRM_2 RNA recogniti 99.6 2.8E-14 6.1E-19 95.8 9.3 72 39-122 1-72 (72)
20 TIGR01645 half-pint poly-U bin 99.6 1.4E-14 3E-19 135.9 9.9 81 35-125 105-185 (612)
21 TIGR01645 half-pint poly-U bin 99.6 2.2E-14 4.7E-19 134.6 11.1 83 36-128 203-285 (612)
22 KOG0131 Splicing factor 3b, su 99.6 7E-15 1.5E-19 116.9 6.4 83 33-125 5-87 (203)
23 KOG0125 Ataxin 2-binding prote 99.5 1.7E-14 3.8E-19 123.7 8.9 87 29-127 88-174 (376)
24 KOG0105 Alternative splicing f 99.5 2.7E-14 5.8E-19 114.0 9.2 80 36-128 5-84 (241)
25 KOG0117 Heterogeneous nuclear 99.5 4E-14 8.6E-19 125.6 10.2 81 35-125 81-162 (506)
26 KOG0126 Predicted RNA-binding 99.5 1.5E-15 3.2E-20 120.8 1.0 82 37-128 35-116 (219)
27 KOG0111 Cyclophilin-type pepti 99.5 7.2E-15 1.6E-19 120.1 5.0 88 35-132 8-95 (298)
28 TIGR01628 PABP-1234 polyadenyl 99.5 4.1E-14 8.9E-19 132.9 10.5 79 38-126 1-79 (562)
29 TIGR01648 hnRNP-R-Q heterogene 99.5 4.2E-14 9.1E-19 132.3 10.3 80 34-124 55-135 (578)
30 smart00360 RRM RNA recognition 99.5 6.7E-14 1.5E-18 93.5 8.1 71 42-122 1-71 (71)
31 PLN03213 repressor of silencin 99.5 3.9E-14 8.5E-19 127.2 8.9 77 37-127 10-88 (759)
32 TIGR01628 PABP-1234 polyadenyl 99.5 7.2E-14 1.6E-18 131.3 10.6 83 35-128 283-365 (562)
33 COG0724 RNA-binding proteins ( 99.5 1.1E-13 2.3E-18 115.0 9.8 80 37-126 115-194 (306)
34 KOG0145 RNA-binding protein EL 99.5 1.7E-13 3.7E-18 114.6 10.5 82 36-127 277-358 (360)
35 cd00590 RRM RRM (RNA recogniti 99.5 3.1E-13 6.6E-18 91.1 9.7 74 39-123 1-74 (74)
36 PLN03121 nucleic acid binding 99.5 2.3E-13 4.9E-18 113.6 10.3 77 37-127 5-81 (243)
37 KOG0108 mRNA cleavage and poly 99.5 7.7E-14 1.7E-18 126.3 8.0 86 38-133 19-104 (435)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.8E-13 6.1E-18 125.3 11.9 80 34-128 272-352 (481)
39 TIGR01648 hnRNP-R-Q heterogene 99.5 1.9E-13 4.2E-18 127.9 10.2 75 37-129 233-309 (578)
40 KOG0145 RNA-binding protein EL 99.5 2.2E-13 4.8E-18 113.9 9.1 85 34-128 38-122 (360)
41 KOG0148 Apoptosis-promoting RN 99.5 3.1E-13 6.7E-18 113.5 9.4 78 35-128 162-239 (321)
42 KOG0148 Apoptosis-promoting RN 99.5 1.4E-13 3E-18 115.6 7.1 80 39-128 64-143 (321)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7.5E-13 1.6E-17 122.4 10.2 75 37-127 2-78 (481)
44 PF13893 RRM_5: RNA recognitio 99.4 2.1E-12 4.6E-17 84.8 8.6 56 64-124 1-56 (56)
45 KOG0117 Heterogeneous nuclear 99.4 7.5E-13 1.6E-17 117.6 7.5 76 37-130 259-334 (506)
46 smart00361 RRM_1 RNA recogniti 99.4 3.3E-12 7.2E-17 87.9 8.1 61 61-121 2-69 (70)
47 KOG0109 RNA-binding protein LA 99.4 8.6E-13 1.9E-17 111.8 5.9 73 37-127 2-74 (346)
48 KOG0127 Nucleolar protein fibr 99.4 2.6E-12 5.6E-17 116.6 9.2 81 37-128 117-197 (678)
49 KOG0114 Predicted RNA-binding 99.4 5E-12 1.1E-16 92.2 8.6 80 36-128 17-96 (124)
50 KOG0144 RNA-binding protein CU 99.3 1.2E-12 2.6E-17 115.9 5.2 86 37-133 124-212 (510)
51 KOG0146 RNA-binding protein ET 99.3 1.7E-12 3.7E-17 109.0 5.5 84 35-128 283-366 (371)
52 KOG0144 RNA-binding protein CU 99.3 2.8E-12 6E-17 113.6 6.8 84 37-130 34-120 (510)
53 KOG0415 Predicted peptidyl pro 99.3 2.9E-12 6.4E-17 111.1 6.3 83 34-126 236-318 (479)
54 KOG0127 Nucleolar protein fibr 99.3 9.3E-12 2E-16 113.1 8.8 83 35-127 290-378 (678)
55 KOG0147 Transcriptional coacti 99.3 5.5E-12 1.2E-16 114.5 6.8 80 40-129 281-360 (549)
56 KOG0124 Polypyrimidine tract-b 99.3 3.4E-12 7.3E-17 111.2 4.8 77 37-123 113-189 (544)
57 KOG0132 RNA polymerase II C-te 99.3 3.4E-11 7.3E-16 113.1 10.9 79 37-131 421-499 (894)
58 KOG0109 RNA-binding protein LA 99.2 8.8E-12 1.9E-16 105.7 5.1 79 35-131 76-154 (346)
59 KOG4212 RNA-binding protein hn 99.2 4.2E-11 9.2E-16 106.4 8.7 78 37-125 44-122 (608)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.2 4.8E-11 1E-15 110.6 9.6 73 36-125 174-258 (509)
61 KOG0131 Splicing factor 3b, su 99.2 3.9E-11 8.4E-16 95.7 6.1 86 35-130 94-180 (203)
62 KOG4208 Nucleolar RNA-binding 99.1 2.9E-10 6.2E-15 92.4 8.3 83 35-127 47-130 (214)
63 KOG0123 Polyadenylate-binding 99.1 4.8E-10 1E-14 100.4 8.0 78 40-130 79-156 (369)
64 KOG0106 Alternative splicing f 99.1 1.4E-10 2.9E-15 95.9 4.1 72 38-127 2-73 (216)
65 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.1E-10 8.8E-15 103.1 7.3 84 35-128 403-486 (940)
66 KOG4206 Spliceosomal protein s 99.0 9.6E-10 2.1E-14 90.5 8.1 81 35-128 7-91 (221)
67 KOG0110 RNA-binding protein (R 99.0 7.9E-10 1.7E-14 103.2 8.0 79 37-125 515-596 (725)
68 KOG0153 Predicted RNA-binding 99.0 1E-09 2.2E-14 95.2 8.0 79 32-126 223-302 (377)
69 KOG4205 RNA-binding protein mu 99.0 3.7E-10 8E-15 98.5 4.9 82 36-128 5-86 (311)
70 KOG4212 RNA-binding protein hn 99.0 1.1E-09 2.4E-14 97.5 7.4 77 33-124 532-608 (608)
71 KOG0533 RRM motif-containing p 99.0 2.2E-09 4.7E-14 90.5 8.3 81 37-128 83-163 (243)
72 KOG4205 RNA-binding protein mu 99.0 8.6E-10 1.9E-14 96.2 5.5 84 37-131 97-180 (311)
73 KOG4454 RNA binding protein (R 98.9 4.1E-10 8.8E-15 92.3 2.7 83 32-126 4-86 (267)
74 KOG0146 RNA-binding protein ET 98.9 1.1E-09 2.3E-14 92.4 5.2 83 37-130 19-104 (371)
75 KOG0110 RNA-binding protein (R 98.9 7.5E-10 1.6E-14 103.4 4.4 82 37-128 613-694 (725)
76 KOG0124 Polypyrimidine tract-b 98.9 2.3E-09 5E-14 93.7 6.6 78 37-124 210-287 (544)
77 PF04059 RRM_2: RNA recognitio 98.9 9.8E-09 2.1E-13 75.0 8.7 80 38-127 2-87 (97)
78 KOG0116 RasGAP SH3 binding pro 98.9 1.2E-08 2.7E-13 92.2 11.0 82 35-127 286-367 (419)
79 KOG0123 Polyadenylate-binding 98.9 4.3E-09 9.4E-14 94.3 8.1 74 38-127 2-75 (369)
80 KOG1457 RNA binding protein (c 98.9 1.4E-08 3.1E-13 83.6 10.3 101 19-129 16-120 (284)
81 KOG4209 Splicing factor RNPS1, 98.8 6.3E-09 1.4E-13 87.5 6.3 81 36-127 100-180 (231)
82 KOG1548 Transcription elongati 98.8 1.4E-08 3E-13 88.2 7.8 86 33-129 130-223 (382)
83 KOG0151 Predicted splicing reg 98.8 1.7E-08 3.6E-13 94.5 8.4 92 25-126 162-256 (877)
84 KOG4660 Protein Mei2, essentia 98.7 1.4E-08 3E-13 92.9 4.6 70 36-120 74-143 (549)
85 KOG1190 Polypyrimidine tract-b 98.6 2.3E-07 4.9E-12 82.3 9.4 79 37-129 297-375 (492)
86 KOG0120 Splicing factor U2AF, 98.6 4.1E-08 8.8E-13 90.1 3.9 84 35-128 287-370 (500)
87 KOG1995 Conserved Zn-finger pr 98.6 6.7E-08 1.5E-12 84.4 4.7 85 34-128 63-155 (351)
88 KOG4211 Splicing factor hnRNP- 98.6 1.9E-07 4.2E-12 84.4 7.6 76 37-126 10-85 (510)
89 KOG0106 Alternative splicing f 98.5 1.1E-07 2.4E-12 78.8 5.2 69 35-121 97-165 (216)
90 PF08777 RRM_3: RNA binding mo 98.4 8.8E-07 1.9E-11 65.8 6.0 71 38-124 2-77 (105)
91 KOG0226 RNA-binding proteins [ 98.4 4.4E-07 9.4E-12 76.2 4.4 80 36-125 189-268 (290)
92 KOG0105 Alternative splicing f 98.4 3.2E-06 7E-11 68.1 9.2 72 28-116 106-177 (241)
93 KOG1456 Heterogeneous nuclear 98.3 8E-06 1.7E-10 72.0 10.9 81 35-129 285-365 (494)
94 KOG0147 Transcriptional coacti 98.3 2.9E-07 6.3E-12 84.2 2.0 80 38-128 180-259 (549)
95 KOG4211 Splicing factor hnRNP- 98.3 2.8E-06 6.1E-11 77.0 8.0 79 35-125 101-180 (510)
96 PF11608 Limkain-b1: Limkain b 98.2 3.6E-06 7.8E-11 59.5 5.8 71 38-128 3-78 (90)
97 KOG1457 RNA binding protein (c 98.2 1.9E-06 4.2E-11 71.2 4.1 68 33-114 206-273 (284)
98 KOG4206 Spliceosomal protein s 98.1 1.3E-05 2.9E-10 66.2 7.7 77 34-125 143-220 (221)
99 KOG4849 mRNA cleavage factor I 98.1 1.9E-06 4E-11 75.3 2.5 80 37-126 80-161 (498)
100 KOG2314 Translation initiation 98.1 1.4E-05 2.9E-10 73.8 7.9 83 36-123 57-140 (698)
101 PF14605 Nup35_RRM_2: Nup53/35 98.1 1.2E-05 2.6E-10 52.3 5.4 53 37-106 1-53 (53)
102 COG5175 MOT2 Transcriptional r 98.0 1.2E-05 2.6E-10 70.1 6.5 79 37-125 114-201 (480)
103 KOG4307 RNA binding protein RB 98.0 3.7E-05 8E-10 72.5 10.0 75 38-123 868-943 (944)
104 PF05172 Nup35_RRM: Nup53/35/4 98.0 4E-05 8.7E-10 56.3 7.7 79 36-126 5-91 (100)
105 KOG1456 Heterogeneous nuclear 97.9 6.1E-05 1.3E-09 66.6 9.0 66 59-129 134-201 (494)
106 KOG4210 Nuclear localization s 97.9 8.1E-06 1.8E-10 70.9 3.4 84 35-129 182-266 (285)
107 KOG0120 Splicing factor U2AF, 97.9 4.1E-05 9E-10 70.6 7.2 67 62-128 424-493 (500)
108 KOG1190 Polypyrimidine tract-b 97.8 6.1E-05 1.3E-09 67.2 7.0 78 35-126 412-490 (492)
109 KOG1548 Transcription elongati 97.7 9.5E-05 2E-09 64.7 7.2 90 35-128 263-353 (382)
110 KOG3152 TBP-binding protein, a 97.7 1.7E-05 3.6E-10 66.8 2.3 71 38-118 75-157 (278)
111 KOG0129 Predicted RNA-binding 97.7 9.5E-05 2.1E-09 67.6 6.7 65 34-108 367-432 (520)
112 KOG1365 RNA-binding protein Fu 97.6 6.6E-05 1.4E-09 66.6 4.2 77 37-124 280-359 (508)
113 PF08952 DUF1866: Domain of un 97.6 0.00028 6.1E-09 55.1 7.2 56 63-127 52-107 (146)
114 KOG1855 Predicted RNA-binding 97.6 4.1E-05 8.9E-10 68.6 2.8 68 36-113 230-310 (484)
115 KOG2202 U2 snRNP splicing fact 97.6 3.1E-05 6.8E-10 65.2 1.5 69 62-131 83-152 (260)
116 KOG2416 Acinus (induces apopto 97.5 0.00012 2.5E-09 68.1 4.3 76 35-126 442-521 (718)
117 KOG1996 mRNA splicing factor [ 97.5 0.00031 6.7E-09 60.4 6.4 67 61-127 300-367 (378)
118 KOG0129 Predicted RNA-binding 97.4 0.00066 1.4E-08 62.3 8.7 64 35-109 257-326 (520)
119 KOG4676 Splicing factor, argin 97.4 1.3E-05 2.8E-10 71.0 -2.5 74 38-126 152-225 (479)
120 KOG4676 Splicing factor, argin 97.4 0.00035 7.5E-09 62.2 6.0 75 37-122 7-84 (479)
121 KOG0112 Large RNA-binding prot 97.2 0.00056 1.2E-08 66.3 5.5 81 33-129 451-533 (975)
122 KOG2193 IGF-II mRNA-binding pr 97.0 0.00059 1.3E-08 61.3 3.3 76 38-129 2-78 (584)
123 KOG0128 RNA-binding protein SA 96.9 5.8E-05 1.3E-09 72.5 -3.8 68 38-115 668-735 (881)
124 KOG1365 RNA-binding protein Fu 96.9 0.00084 1.8E-08 59.7 3.2 69 39-119 163-235 (508)
125 KOG0128 RNA-binding protein SA 96.8 0.00063 1.4E-08 65.6 2.3 81 37-128 736-816 (881)
126 KOG2135 Proteins containing th 96.8 0.00065 1.4E-08 61.8 2.1 74 37-126 372-445 (526)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.0049 1.1E-07 49.9 7.0 83 36-128 6-99 (176)
128 PF10309 DUF2414: Protein of u 96.8 0.0057 1.2E-07 40.9 6.0 55 37-109 5-62 (62)
129 KOG4285 Mitotic phosphoprotein 96.7 0.0075 1.6E-07 52.2 7.7 73 37-127 197-270 (350)
130 KOG2891 Surface glycoprotein [ 96.6 0.00063 1.4E-08 58.3 0.7 78 37-114 149-247 (445)
131 KOG4307 RNA binding protein RB 96.6 0.0013 2.9E-08 62.4 2.8 79 35-124 432-511 (944)
132 KOG4660 Protein Mei2, essentia 96.6 0.0033 7.1E-08 58.3 5.3 57 71-127 413-473 (549)
133 KOG2068 MOT2 transcription fac 96.6 0.00099 2.1E-08 58.3 1.4 81 38-127 78-163 (327)
134 PF08675 RNA_bind: RNA binding 96.2 0.026 5.6E-07 40.0 6.7 55 39-111 10-64 (87)
135 PF03880 DbpA: DbpA RNA bindin 96.1 0.029 6.3E-07 38.7 6.7 58 58-124 12-74 (74)
136 PF15023 DUF4523: Protein of u 96.0 0.027 5.9E-07 43.9 6.6 72 36-125 85-160 (166)
137 PF11767 SET_assoc: Histone ly 96.0 0.045 9.7E-07 37.1 6.9 55 58-121 11-65 (66)
138 KOG0115 RNA-binding protein p5 95.9 0.0079 1.7E-07 50.9 3.6 62 38-110 32-93 (275)
139 PF04847 Calcipressin: Calcipr 95.8 0.032 6.9E-07 45.5 6.4 63 59-127 7-71 (184)
140 KOG0112 Large RNA-binding prot 95.7 0.0022 4.8E-08 62.4 -0.8 78 36-124 371-448 (975)
141 KOG4574 RNA-binding protein (c 95.5 0.0082 1.8E-07 58.2 2.4 65 58-128 309-375 (1007)
142 KOG2253 U1 snRNP complex, subu 95.4 0.008 1.7E-07 56.8 2.0 71 34-123 37-107 (668)
143 PF07576 BRAP2: BRCA1-associat 95.3 0.2 4.4E-06 37.4 8.8 69 37-116 12-81 (110)
144 KOG2591 c-Mpl binding protein, 95.1 0.033 7.2E-07 51.9 4.7 71 35-122 173-247 (684)
145 KOG4210 Nuclear localization s 93.5 0.042 9.2E-07 47.8 1.8 81 36-126 87-167 (285)
146 KOG4019 Calcineurin-mediated s 93.4 0.072 1.6E-06 43.0 2.8 82 35-127 8-90 (193)
147 KOG0804 Cytoplasmic Zn-finger 93.3 0.21 4.5E-06 45.6 6.0 68 37-116 74-142 (493)
148 KOG2193 IGF-II mRNA-binding pr 91.4 0.0091 2E-07 53.9 -5.0 77 37-126 80-156 (584)
149 KOG2318 Uncharacterized conser 90.5 1.4 3.1E-05 41.6 8.1 82 35-125 172-306 (650)
150 KOG4410 5-formyltetrahydrofola 89.7 1 2.2E-05 39.1 6.0 65 30-110 323-395 (396)
151 PF07530 PRE_C2HC: Associated 88.8 0.88 1.9E-05 30.9 4.2 62 62-126 2-64 (68)
152 smart00596 PRE_C2HC PRE_C2HC d 88.5 0.57 1.2E-05 31.9 3.0 61 62-125 2-63 (69)
153 KOG4207 Predicted splicing fac 87.1 16 0.00035 30.5 11.2 56 60-115 29-86 (256)
154 PRK11634 ATP-dependent RNA hel 85.0 15 0.00033 35.5 11.8 61 58-127 498-563 (629)
155 KOG2295 C2H2 Zn-finger protein 83.1 0.18 3.9E-06 47.2 -2.1 74 36-119 230-303 (648)
156 PF03468 XS: XS domain; Inter 81.1 2.9 6.2E-05 31.5 4.2 63 37-106 8-74 (116)
157 KOG4483 Uncharacterized conser 81.0 2.9 6.3E-05 38.0 4.8 59 33-108 387-446 (528)
158 COG0724 RNA-binding proteins ( 78.5 2.8 6.1E-05 34.0 3.8 63 34-106 222-284 (306)
159 KOG4454 RNA binding protein (R 77.7 0.53 1.2E-05 39.3 -0.7 59 59-118 96-154 (267)
160 KOG1295 Nonsense-mediated deca 76.4 4 8.6E-05 36.8 4.3 71 35-115 5-78 (376)
161 KOG4365 Uncharacterized conser 75.7 0.67 1.5E-05 42.4 -0.7 77 39-126 5-81 (572)
162 PF10567 Nab6_mRNP_bdg: RNA-re 75.1 7.8 0.00017 33.8 5.6 79 37-125 15-106 (309)
163 PRK11901 hypothetical protein; 69.6 8.8 0.00019 34.0 4.7 53 59-113 254-308 (327)
164 PF00403 HMA: Heavy-metal-asso 68.9 20 0.00043 22.9 5.4 54 39-108 1-58 (62)
165 COG5638 Uncharacterized conser 68.1 21 0.00047 32.7 6.9 37 35-80 144-184 (622)
166 KOG4008 rRNA processing protei 61.6 8.7 0.00019 32.5 3.0 33 35-77 38-70 (261)
167 COG2608 CopZ Copper chaperone 60.7 24 0.00051 23.8 4.6 56 37-108 3-62 (71)
168 PF01037 AsnC_trans_reg: AsnC 56.8 52 0.0011 21.4 6.5 44 61-108 12-55 (74)
169 PF11491 DUF3213: Protein of u 55.7 19 0.00041 25.4 3.5 54 63-122 15-72 (88)
170 PF02714 DUF221: Domain of unk 52.0 18 0.0004 31.4 3.7 34 92-127 1-34 (325)
171 PF15513 DUF4651: Domain of un 51.7 28 0.0006 23.2 3.6 20 61-80 8-27 (62)
172 COG5193 LHP1 La protein, small 46.2 12 0.00025 34.2 1.5 47 61-107 196-244 (438)
173 KOG1847 mRNA splicing factor [ 46.1 15 0.00033 35.5 2.3 15 40-55 547-561 (878)
174 COG0150 PurM Phosphoribosylami 45.6 6.9 0.00015 34.9 -0.0 51 58-112 272-322 (345)
175 PF08544 GHMP_kinases_C: GHMP 45.1 69 0.0015 21.4 5.1 44 62-110 37-80 (85)
176 PF08734 GYD: GYD domain; Int 44.8 1E+02 0.0022 21.8 6.0 45 61-109 22-67 (91)
177 PRK14548 50S ribosomal protein 44.0 77 0.0017 22.4 5.1 48 59-109 32-81 (84)
178 KOG4213 RNA-binding protein La 41.0 57 0.0012 26.6 4.5 49 59-108 118-169 (205)
179 KOG3702 Nuclear polyadenylated 40.2 16 0.00035 35.3 1.5 71 39-120 513-583 (681)
180 PRK08559 nusG transcription an 39.5 96 0.0021 24.2 5.7 35 74-113 36-70 (153)
181 KOG1847 mRNA splicing factor [ 39.5 26 0.00055 34.0 2.7 9 164-172 735-743 (878)
182 KOG4840 Predicted hydrolases o 39.1 39 0.00084 28.8 3.5 75 37-122 37-113 (299)
183 PF03439 Spt5-NGN: Early trans 39.1 96 0.0021 21.5 5.1 27 87-113 42-68 (84)
184 COG5507 Uncharacterized conser 38.8 40 0.00087 24.7 3.0 23 87-109 64-86 (117)
185 TIGR03636 L23_arch archaeal ri 38.7 1.1E+02 0.0024 21.2 5.2 56 40-108 16-73 (77)
186 PF14581 SseB_C: SseB protein 38.2 65 0.0014 23.2 4.3 65 61-125 21-89 (108)
187 PRK10629 EnvZ/OmpR regulon mod 37.6 1.1E+02 0.0024 23.2 5.6 59 59-125 50-109 (127)
188 COG3254 Uncharacterized conser 37.6 78 0.0017 23.4 4.4 43 61-106 26-68 (105)
189 smart00195 DSPc Dual specifici 36.8 1.5E+02 0.0033 21.9 6.3 11 38-48 6-16 (138)
190 KOG2888 Putative RNA binding p 36.2 24 0.00052 31.5 1.9 6 64-69 174-179 (453)
191 PF08156 NOP5NT: NOP5NT (NUC12 36.0 11 0.00024 25.4 -0.2 38 62-109 27-64 (67)
192 KOG3424 40S ribosomal protein 34.8 88 0.0019 23.7 4.4 45 58-103 34-83 (132)
193 smart00666 PB1 PB1 domain. Pho 34.7 1.4E+02 0.0031 20.0 5.4 56 40-110 12-69 (81)
194 PF07292 NID: Nmi/IFP 35 domai 34.4 24 0.00052 25.2 1.3 22 37-68 52-73 (88)
195 PF11823 DUF3343: Protein of u 33.6 53 0.0012 22.0 3.0 24 91-114 3-26 (73)
196 PF12623 Hen1_L: RNA repair, l 33.4 1.2E+02 0.0026 25.8 5.4 64 35-109 116-183 (245)
197 PF09707 Cas_Cas2CT1978: CRISP 33.0 78 0.0017 22.5 3.8 50 35-97 23-72 (86)
198 PF13291 ACT_4: ACT domain; PD 33.0 1.5E+02 0.0033 19.7 5.4 54 59-112 18-72 (80)
199 PF15063 TC1: Thyroid cancer p 32.2 12 0.00026 25.9 -0.5 48 40-109 28-78 (79)
200 PF14111 DUF4283: Domain of un 31.7 24 0.00051 26.9 1.0 58 59-125 29-90 (153)
201 PF08206 OB_RNB: Ribonuclease 31.7 11 0.00024 24.4 -0.7 37 88-125 7-44 (58)
202 cd06404 PB1_aPKC PB1 domain is 30.3 2E+02 0.0043 20.3 6.4 55 39-110 10-69 (83)
203 PRK10905 cell division protein 29.8 96 0.0021 27.6 4.5 52 59-112 256-309 (328)
204 PF07237 DUF1428: Protein of u 29.3 1.4E+02 0.0031 22.0 4.7 48 62-109 23-85 (103)
205 KOG0107 Alternative splicing f 28.4 3.3E+02 0.0071 22.3 10.6 7 178-184 140-146 (195)
206 PF14893 PNMA: PNMA 27.8 53 0.0012 29.3 2.7 52 35-98 16-71 (331)
207 PHA01632 hypothetical protein 27.7 59 0.0013 21.2 2.1 21 40-70 19-39 (64)
208 PF05929 Phage_GPO: Phage caps 27.7 1.3E+02 0.0029 26.1 5.0 67 57-124 37-108 (276)
209 TIGR00587 nfo apurinic endonuc 27.4 93 0.002 26.5 4.1 63 37-110 137-202 (274)
210 PF13689 DUF4154: Domain of un 27.4 1E+02 0.0023 23.5 4.0 48 74-125 14-61 (145)
211 KOG3655 Drebrins and related a 27.2 83 0.0018 29.4 3.8 45 54-99 41-88 (484)
212 COG1207 GlmU N-acetylglucosami 27.0 1.2E+02 0.0026 28.2 4.8 65 38-112 98-174 (460)
213 PF04127 DFP: DNA / pantothena 26.6 1.4E+02 0.0031 24.0 4.8 59 39-109 20-79 (185)
214 PF09902 DUF2129: Uncharacteri 26.2 1.2E+02 0.0026 20.7 3.6 38 67-113 16-53 (71)
215 PF11411 DNA_ligase_IV: DNA li 26.0 56 0.0012 19.3 1.7 16 58-73 20-35 (36)
216 cd04904 ACT_AAAH ACT domain of 25.8 2.1E+02 0.0045 19.1 7.0 50 60-111 13-65 (74)
217 PF05189 RTC_insert: RNA 3'-te 25.6 1.8E+02 0.0039 20.8 4.8 49 39-97 12-65 (103)
218 PRK01178 rps24e 30S ribosomal 25.5 2.3E+02 0.0051 20.6 5.3 45 59-104 31-80 (99)
219 PF01282 Ribosomal_S24e: Ribos 25.4 1.7E+02 0.0036 20.5 4.4 44 59-103 13-61 (84)
220 PF12829 Mhr1: Transcriptional 25.4 2.1E+02 0.0045 20.6 4.9 49 58-110 23-72 (91)
221 PTZ00071 40S ribosomal protein 25.3 2E+02 0.0044 22.1 5.1 44 59-103 36-85 (132)
222 cd04908 ACT_Bt0572_1 N-termina 25.1 1.9E+02 0.0042 18.5 6.5 48 61-113 15-63 (66)
223 PF02946 GTF2I: GTF2I-like rep 24.8 1.6E+02 0.0034 20.5 4.0 39 37-77 34-72 (76)
224 KOG0156 Cytochrome P450 CYP2 s 24.7 1.2E+02 0.0026 28.5 4.6 62 41-119 36-97 (489)
225 COG0225 MsrA Peptide methionin 24.7 1.6E+02 0.0034 23.8 4.6 77 39-128 59-139 (174)
226 TIGR00405 L26e_arch ribosomal 24.7 1.2E+02 0.0026 23.2 3.9 27 87-113 36-62 (145)
227 PRK11230 glycolate oxidase sub 24.4 3E+02 0.0066 25.8 7.2 49 61-110 203-255 (499)
228 KOG0862 Synaptobrevin/VAMP-lik 24.2 58 0.0012 27.2 2.1 14 87-100 107-120 (216)
229 PF00585 Thr_dehydrat_C: C-ter 23.8 1.4E+02 0.003 21.1 3.8 50 63-112 23-74 (91)
230 smart00738 NGN In Spt5p, this 23.4 1.3E+02 0.0029 21.1 3.7 25 88-112 58-82 (106)
231 PF14111 DUF4283: Domain of un 22.9 55 0.0012 24.8 1.7 36 37-81 104-139 (153)
232 PRK02886 hypothetical protein; 22.8 1.4E+02 0.0031 21.3 3.5 38 67-113 20-57 (87)
233 KOG3671 Actin regulatory prote 22.7 1.4E+02 0.0031 28.2 4.5 67 40-112 67-138 (569)
234 PRK02302 hypothetical protein; 21.6 1.5E+02 0.0033 21.2 3.6 38 67-113 22-59 (89)
235 PRK11558 putative ssRNA endonu 21.6 1.4E+02 0.003 21.8 3.4 50 35-98 25-75 (97)
236 PF08503 DapH_N: Tetrahydrodip 21.2 3.1E+02 0.0067 19.3 5.4 28 93-121 44-71 (83)
237 COG5584 Predicted small secret 20.7 1.5E+02 0.0032 21.7 3.3 26 59-84 34-59 (103)
238 PRK05772 translation initiatio 20.5 2.8E+02 0.0062 25.1 5.9 49 59-109 3-56 (363)
239 KOG2187 tRNA uracil-5-methyltr 20.4 70 0.0015 30.3 2.0 38 89-126 63-100 (534)
240 cd00027 BRCT Breast Cancer Sup 20.4 2.2E+02 0.0047 17.3 4.8 26 38-73 2-27 (72)
241 PF00564 PB1: PB1 domain; Int 20.2 1.4E+02 0.003 20.0 3.1 46 59-111 22-71 (84)
242 TIGR01743 purR_Bsub pur operon 20.1 2.6E+02 0.0056 24.1 5.4 48 58-110 37-86 (268)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=3.2e-21 Score=152.02 Aligned_cols=81 Identities=31% Similarity=0.589 Sum_probs=75.7
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..++|||+||+.. +++.||+.+|..||.|..|+|.. .++|||||||++..+|+.|+..|+|..
T Consensus 7 ~~~~~kVYVGnL~~~----------a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSR----------ATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred cCCCceEEeccCCCC----------cchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCcc
Confidence 466899999999999 99999999999999999999986 458999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|..|.|++++....
T Consensus 72 ~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 72 ICGSRIRVELSTGRPR 87 (195)
T ss_pred ccCceEEEEeecCCcc
Confidence 9999999999987654
No 2
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.85 E-value=1.4e-20 Score=151.93 Aligned_cols=84 Identities=49% Similarity=0.750 Sum_probs=79.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+..++|.|.||.+. |+.++|..+|++||.|.+|.|+.|..|++.+|||||.|.+..+|+.||++|+|.+|
T Consensus 11 ~gm~SLkVdNLTyR----------Tspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l 80 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYR----------TSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL 80 (256)
T ss_pred ccceeEEecceecc----------CCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee
Confidence 44678999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|++|....
T Consensus 81 dgRelrVq~arygr 94 (256)
T KOG4207|consen 81 DGRELRVQMARYGR 94 (256)
T ss_pred ccceeeehhhhcCC
Confidence 99999999997544
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=7.9e-20 Score=143.34 Aligned_cols=98 Identities=33% Similarity=0.443 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHH
Q 027685 23 PSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADA 102 (220)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 102 (220)
+.|.....+......++|||+|||++ ++|++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|
T Consensus 20 ~~~~~~~~~~~~~~~~~lfVgnL~~~----------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A 89 (144)
T PLN03134 20 NVPVTSMLGSLRLMSTKLFIGGLSWG----------TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAA 89 (144)
T ss_pred CCccccccccccCCCCEEEEeCCCCC----------CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHH
Confidence 34555566667788999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceecCeEEEEEEeccCCCC
Q 027685 103 ADAKYHMDGYLLLGRELTVVFAEENRKK 130 (220)
Q Consensus 103 ~~Al~~l~g~~i~g~~l~v~~a~~~~~~ 130 (220)
++||+.||+.+|+|+.|+|+++.+....
T Consensus 90 ~~Al~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 90 TAAISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred HHHHHHcCCCEECCEEEEEEeCCcCCCC
Confidence 9999999999999999999999865443
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.1e-17 Score=138.88 Aligned_cols=87 Identities=31% Similarity=0.468 Sum_probs=82.2
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
++-+||||+-|+++ ++|..|+.+|..||+|..|.||.+..||+++|||||+|+++.++..|.+..+|.+|
T Consensus 99 DPy~TLFv~RLnyd----------T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 99 DPYKTLFVARLNYD----------TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred Cccceeeeeecccc----------ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 77899999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCCC
Q 027685 115 LGRELTVVFAEENRKKP 131 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~~ 131 (220)
+|+.|.|.+-.....+.
T Consensus 169 dgrri~VDvERgRTvkg 185 (335)
T KOG0113|consen 169 DGRRILVDVERGRTVKG 185 (335)
T ss_pred cCcEEEEEecccccccc
Confidence 99999999987655443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=5e-17 Score=143.67 Aligned_cols=82 Identities=32% Similarity=0.489 Sum_probs=78.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
+.+|||+|||++ +++++|+++|++||.|..|.|+.|..++.++|||||+|.+.++|..||..|||..|+|
T Consensus 269 ~~~lfV~NL~~~----------~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 269 GYCIFVYNLSPD----------TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 447999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|.|+..+.
T Consensus 339 r~i~V~~~~~~~ 350 (352)
T TIGR01661 339 RVLQVSFKTNKA 350 (352)
T ss_pred eEEEEEEccCCC
Confidence 999999988764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=6.7e-17 Score=142.85 Aligned_cols=83 Identities=31% Similarity=0.563 Sum_probs=78.9
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||.. +++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.
T Consensus 2 ~~~~l~V~nLp~~----------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~ 71 (352)
T TIGR01661 2 SKTNLIVNYLPQT----------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ 71 (352)
T ss_pred CCcEEEEeCCCCC----------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC
Confidence 4689999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|+++.+..
T Consensus 72 g~~i~v~~a~~~~ 84 (352)
T TIGR01661 72 NKTIKVSYARPSS 84 (352)
T ss_pred CeeEEEEeecccc
Confidence 9999999987543
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=7.2e-17 Score=143.18 Aligned_cols=84 Identities=27% Similarity=0.448 Sum_probs=79.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +|+++|+++|.+||+|+.|.|+.|..++..++||||+|.+.++|++||+.||+..
T Consensus 104 ~~~~~~LfVgnLp~~----------~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~ 173 (346)
T TIGR01659 104 NNSGTNLIVNYLPQD----------MTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT 173 (346)
T ss_pred CCCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc
Confidence 345789999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEeccC
Q 027685 114 LLGRELTVVFAEEN 127 (220)
Q Consensus 114 i~g~~l~v~~a~~~ 127 (220)
|.+++|+|.++.+.
T Consensus 174 l~gr~i~V~~a~p~ 187 (346)
T TIGR01659 174 VRNKRLKVSYARPG 187 (346)
T ss_pred cCCceeeeeccccc
Confidence 99999999998653
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.8e-16 Score=107.72 Aligned_cols=70 Identities=34% Similarity=0.628 Sum_probs=66.6
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEE
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 119 (220)
|||+|||++ +++++|.++|.+||.|..+.|..+ .++...+||||+|.+.++|+.||+.|+|..|+|+.|
T Consensus 1 l~v~nlp~~----------~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPD----------VTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTT----------SSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCc----------CCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999 999999999999999999999987 678889999999999999999999999999999988
Q ss_pred E
Q 027685 120 T 120 (220)
Q Consensus 120 ~ 120 (220)
+
T Consensus 70 r 70 (70)
T PF00076_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 5
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.6e-16 Score=130.10 Aligned_cols=87 Identities=36% Similarity=0.526 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 31 GRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 31 ~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.+.++..++|-|.||+.+ ++|++|.++|.+||.|..|.|+.|+.||.++|||||.|.+.++|++||..||
T Consensus 183 ~R~R~D~~tvRvtNLsed----------~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln 252 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSED----------MREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN 252 (270)
T ss_pred cccCCccceeEEecCccc----------cChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc
Confidence 356778999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CceecCeEEEEEEeccC
Q 027685 111 GYLLLGRELTVVFAEEN 127 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~ 127 (220)
|.-++.-.|.|+|++++
T Consensus 253 G~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 253 GYGYDNLILRVEWSKPS 269 (270)
T ss_pred CcccceEEEEEEecCCC
Confidence 99999999999999875
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=1.7e-15 Score=134.46 Aligned_cols=84 Identities=33% Similarity=0.523 Sum_probs=77.7
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||+. +||++|+++|.+||+|+.|.|+.+..++.+++||||+|.+.++|++||+.||++.|.
T Consensus 192 ~~~~lfV~nLp~~----------vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 192 KDTNLYVTNLPRT----------ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ccceeEEeCCCCc----------ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4678999999999 999999999999999999999999989999999999999999999999999999887
Q ss_pred C--eEEEEEEeccCCC
Q 027685 116 G--RELTVVFAEENRK 129 (220)
Q Consensus 116 g--~~l~v~~a~~~~~ 129 (220)
+ .+|+|.+|.....
T Consensus 262 g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 262 GGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCceeEEEEECCcccc
Confidence 6 6899999886543
No 11
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=5.6e-16 Score=117.83 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=78.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
...|||.++... +||++|.+.|..||+|.+|.|..|..||..+|||+|+|++.++|++||..|||..|.|
T Consensus 72 GwIi~VtgvHeE----------atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 72 GWIIFVTGVHEE----------ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred eEEEEEeccCcc----------hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 568999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|.|+.-+.
T Consensus 142 q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 142 QNVSVDWCFVKG 153 (170)
T ss_pred CceeEEEEEecC
Confidence 999999998543
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6e-16 Score=116.66 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=77.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...|||||+||+.. ++||+|.++|..+|+|..|.|-.|..+..+.|||||+|...++|+.||+.++|..|
T Consensus 34 r~S~tvyVgNlSfy----------ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL 103 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFY----------TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL 103 (153)
T ss_pred hhcceEEEeeeeee----------ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc
Confidence 34899999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEecc
Q 027685 115 LGRELTVVFAEE 126 (220)
Q Consensus 115 ~g~~l~v~~a~~ 126 (220)
+.++|.|.|...
T Consensus 104 ddr~ir~D~D~G 115 (153)
T KOG0121|consen 104 DDRPIRIDWDAG 115 (153)
T ss_pred cccceeeecccc
Confidence 999999998653
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=4.3e-15 Score=101.61 Aligned_cols=70 Identities=33% Similarity=0.563 Sum_probs=64.6
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEE
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 119 (220)
|||+|||+. +++++|.++|..||.|..|.|..+.. +..+++|||+|.+.++|+.|++.+++..|+|+.|
T Consensus 1 v~i~nlp~~----------~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPS----------TTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT------------HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCC----------CCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 799999999 99999999999999999999998876 8899999999999999999999999999999987
Q ss_pred E
Q 027685 120 T 120 (220)
Q Consensus 120 ~ 120 (220)
+
T Consensus 70 ~ 70 (70)
T PF14259_consen 70 R 70 (70)
T ss_dssp E
T ss_pred C
Confidence 4
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=6.6e-15 Score=134.69 Aligned_cols=79 Identities=24% Similarity=0.451 Sum_probs=74.8
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..+|||+|||.. +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++|| .|+|..|.|
T Consensus 89 ~~~l~V~nlp~~----------~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g 157 (457)
T TIGR01622 89 DRTVFVLQLALK----------ARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLG 157 (457)
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECC
Confidence 568999999999 999999999999999999999999999999999999999999999999 589999999
Q ss_pred eEEEEEEecc
Q 027685 117 RELTVVFAEE 126 (220)
Q Consensus 117 ~~l~v~~a~~ 126 (220)
.+|.|.++..
T Consensus 158 ~~i~v~~~~~ 167 (457)
T TIGR01622 158 RPIIVQSSQA 167 (457)
T ss_pred eeeEEeecch
Confidence 9999988654
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.4e-15 Score=125.19 Aligned_cols=82 Identities=28% Similarity=0.415 Sum_probs=75.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
+..-++|||+||+|+ ++.++|..+|++||+|.+..|+.|+.+|.++|||||+|.+.+.|+.|++- -.-.
T Consensus 9 DT~~TKifVggL~w~----------T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~pi 77 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWE----------THKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPI 77 (247)
T ss_pred CceEEEEEEcCcccc----------cchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCc
Confidence 345678999999999 99999999999999999999999999999999999999999999999965 4578
Q ss_pred ecCeEEEEEEecc
Q 027685 114 LLGRELTVVFAEE 126 (220)
Q Consensus 114 i~g~~l~v~~a~~ 126 (220)
|+|++..|++|--
T Consensus 78 IdGR~aNcnlA~l 90 (247)
T KOG0149|consen 78 IDGRKANCNLASL 90 (247)
T ss_pred ccccccccchhhh
Confidence 9999999998764
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.59 E-value=9e-15 Score=135.45 Aligned_cols=83 Identities=25% Similarity=0.330 Sum_probs=78.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+...+|||+|||+. +++++|.++|++||.|..|.|+.+..+|..+|||||+|.+.++|+.||..|||+.|
T Consensus 293 ~~~~~l~v~nlp~~----------~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~ 362 (509)
T TIGR01642 293 DSKDRIYIGNLPLY----------LGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT 362 (509)
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44679999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
+|..|.|.+|...
T Consensus 363 ~~~~l~v~~a~~~ 375 (509)
T TIGR01642 363 GDNKLHVQRACVG 375 (509)
T ss_pred CCeEEEEEECccC
Confidence 9999999998654
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=1.1e-14 Score=133.29 Aligned_cols=81 Identities=37% Similarity=0.646 Sum_probs=77.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||.. +++++|+++|.+||.|..|.|+.+..+|..+|||||+|.+.++|++||+.|||..|.|
T Consensus 186 ~~~l~v~nl~~~----------~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g 255 (457)
T TIGR01622 186 FLKLYVGNLHFN----------ITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG 255 (457)
T ss_pred CCEEEEcCCCCC----------CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC
Confidence 478999999999 9999999999999999999999998889999999999999999999999999999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|.|+...
T Consensus 256 ~~i~v~~a~~~ 266 (457)
T TIGR01622 256 RPIKVGYAQDS 266 (457)
T ss_pred EEEEEEEccCC
Confidence 99999998743
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=122.00 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=70.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||+. +++++|+++|+.||+|..|.|+.+. ...|||||+|.+.++|+.|| .|||..|.|
T Consensus 4 ~rtVfVgNLs~~----------tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g 69 (260)
T PLN03120 4 VRTVKVSNVSLK----------ATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETAL-LLSGATIVD 69 (260)
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHH-HhcCCeeCC
Confidence 579999999999 9999999999999999999999875 34689999999999999999 599999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|.++...
T Consensus 70 r~V~Vt~a~~~ 80 (260)
T PLN03120 70 QSVTITPAEDY 80 (260)
T ss_pred ceEEEEeccCC
Confidence 99999998754
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=2.8e-14 Score=95.78 Aligned_cols=72 Identities=38% Similarity=0.657 Sum_probs=66.8
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
+|+|.|||.. +++++|.++|.+||.|..+.+..+. +.+.++|||+|.+.++|+.|+..|++..|.|..
T Consensus 1 ~v~i~~l~~~----------~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPD----------VTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCc----------CCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 5899999999 9999999999999999999988765 677899999999999999999999999999999
Q ss_pred EEEE
Q 027685 119 LTVV 122 (220)
Q Consensus 119 l~v~ 122 (220)
|.|+
T Consensus 69 i~v~ 72 (72)
T smart00362 69 LRVE 72 (72)
T ss_pred EeeC
Confidence 8873
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.4e-14 Score=135.89 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=77.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+||++. +++++|.++|.+||.|..|.|+.|..+++++|||||+|.+.++|+.||+.|||..|
T Consensus 105 ~~~~rLfVGnLp~~----------~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i 174 (612)
T TIGR01645 105 AIMCRVYVGSISFE----------LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML 174 (612)
T ss_pred cCCCEEEEcCCCCC----------CCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE
Confidence 45789999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEec
Q 027685 115 LGRELTVVFAE 125 (220)
Q Consensus 115 ~g~~l~v~~a~ 125 (220)
+|+.|+|.+..
T Consensus 175 ~GR~IkV~rp~ 185 (612)
T TIGR01645 175 GGRNIKVGRPS 185 (612)
T ss_pred ecceeeecccc
Confidence 99999998654
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=2.2e-14 Score=134.58 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=78.5
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+||+++ +++++|+++|+.||.|..|.|+.+..++..+|||||+|.+.++|.+||+.||+..|+
T Consensus 203 ~~~rLfVgnLp~~----------vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 203 KFNRIYVASVHPD----------LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ccceEEeecCCCC----------CCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 4579999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|.++....
T Consensus 273 Gr~LrV~kAi~pP 285 (612)
T TIGR01645 273 GQYLRVGKCVTPP 285 (612)
T ss_pred CeEEEEEecCCCc
Confidence 9999999987543
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.55 E-value=7e-15 Score=116.95 Aligned_cols=83 Identities=29% Similarity=0.378 Sum_probs=79.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
+++...||||+||+.. ++++.|+++|-+.|.|.+|.|+.|..+...+|||||+|.++++|+-||+.||..
T Consensus 5 ~rnqd~tiyvgnld~k----------vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~V 74 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEK----------VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMV 74 (203)
T ss_pred ccCCCceEEEecCCHH----------HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHH
Confidence 4677899999999999 999999999999999999999999999999999999999999999999999988
Q ss_pred eecCeEEEEEEec
Q 027685 113 LLLGRELTVVFAE 125 (220)
Q Consensus 113 ~i~g~~l~v~~a~ 125 (220)
.|.|++|+|..+.
T Consensus 75 kLYgrpIrv~kas 87 (203)
T KOG0131|consen 75 KLYGRPIRVNKAS 87 (203)
T ss_pred HhcCceeEEEecc
Confidence 9999999999887
No 23
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.7e-14 Score=123.69 Aligned_cols=87 Identities=32% Similarity=0.531 Sum_probs=78.4
Q ss_pred CCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 29 YGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 29 ~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
......+.++.|+|.|||.. ..+.||..+|.+||+|.+|+|+.+. -.++|||||+|++.++|++|-.+
T Consensus 88 t~s~s~~~pkRLhVSNIPFr----------FRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFR----------FRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CcCCCCCCCceeEeecCCcc----------ccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHH
Confidence 34445677899999999999 9999999999999999999999763 35699999999999999999999
Q ss_pred hCCceecCeEEEEEEeccC
Q 027685 109 MDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 109 l~g~~i~g~~l~v~~a~~~ 127 (220)
|||..|.|++|+|+.|+..
T Consensus 156 LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hhcceeeceEEEEeccchh
Confidence 9999999999999998754
No 24
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.7e-14 Score=114.04 Aligned_cols=80 Identities=36% Similarity=0.580 Sum_probs=73.1
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||.+ +.+.+|+++|.+||.|.+|.|...+ .+..||||+|++..+|+.||+.-+|..++
T Consensus 5 ~~~~iyvGNLP~d----------iRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 5 NSRRIYVGNLPGD----------IREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred ccceEEecCCCcc----------hhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccC
Confidence 3789999999999 9999999999999999999987543 45789999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|+|+....
T Consensus 72 g~rLRVEfprggr 84 (241)
T KOG0105|consen 72 GCRLRVEFPRGGR 84 (241)
T ss_pred cceEEEEeccCCC
Confidence 9999999987654
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4e-14 Score=125.62 Aligned_cols=81 Identities=22% Similarity=0.446 Sum_probs=76.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+..|-|||+.||.+ +.|++|..+|++.|+|-++.|++|+.+|.++|||||+|.+.++|++||+.||+++|
T Consensus 81 ~~G~EVfvGkIPrD----------~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRD----------VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred CCCceEEecCCCcc----------ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 55899999999999 99999999999999999999999999999999999999999999999999999987
Q ss_pred c-CeEEEEEEec
Q 027685 115 L-GRELTVVFAE 125 (220)
Q Consensus 115 ~-g~~l~v~~a~ 125 (220)
. |+.|.|+.+.
T Consensus 151 r~GK~igvc~Sv 162 (506)
T KOG0117|consen 151 RPGKLLGVCVSV 162 (506)
T ss_pred cCCCEeEEEEee
Confidence 4 8888887764
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.5e-15 Score=120.79 Aligned_cols=82 Identities=28% Similarity=0.466 Sum_probs=77.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..-|||+|||++ +||.||..+|++||+|++|.|+.|..||+++||||+.|++.-...-|+..|||..|.|
T Consensus 35 sA~Iyiggl~~~----------LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 35 SAYIYIGGLPYE----------LTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ceEEEECCCccc----------ccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 557999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|.+.....
T Consensus 105 RtirVDHv~~Yk 116 (219)
T KOG0126|consen 105 RTIRVDHVSNYK 116 (219)
T ss_pred eeEEeeeccccc
Confidence 999999876443
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.2e-15 Score=120.13 Aligned_cols=88 Identities=34% Similarity=0.557 Sum_probs=82.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
....||||++|..+ ++|.-|...|-+||.|..|.|+.|..+++.+|||||+|...++|.+||..||+.+|
T Consensus 8 ~~KrtlYVGGlade----------VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL 77 (298)
T KOG0111|consen 8 NQKRTLYVGGLADE----------VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL 77 (298)
T ss_pred ccceeEEeccchHH----------HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh
Confidence 34679999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCCCc
Q 027685 115 LGRELTVVFAEENRKKPS 132 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~~~ 132 (220)
.|+.|.|++|.+.+.+..
T Consensus 78 ~GrtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 78 FGRTIRVNLAKPEKIKEG 95 (298)
T ss_pred cceeEEEeecCCccccCC
Confidence 999999999998766543
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=4.1e-14 Score=132.90 Aligned_cols=79 Identities=29% Similarity=0.465 Sum_probs=75.6
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
.+|||+|||.+ +||++|.++|.+||.|..|.|+.|..++...|||||+|.+.++|++||+.||+..|.|+
T Consensus 1 ~sl~VgnLp~~----------vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk 70 (562)
T TIGR01628 1 ASLYVGDLDPD----------VTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK 70 (562)
T ss_pred CeEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 37999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecc
Q 027685 118 ELTVVFAEE 126 (220)
Q Consensus 118 ~l~v~~a~~ 126 (220)
.|.|.|+..
T Consensus 71 ~i~i~~s~~ 79 (562)
T TIGR01628 71 PIRIMWSQR 79 (562)
T ss_pred eEEeecccc
Confidence 999999753
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=4.2e-14 Score=132.29 Aligned_cols=80 Identities=24% Similarity=0.442 Sum_probs=72.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....|+|||+|||++ ++|++|.++|.+||.|..|.|++| .++.++|||||+|.+.++|++||+.||+.+
T Consensus 55 p~~~~~lFVgnLp~~----------~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~ 123 (578)
T TIGR01648 55 PGRGCEVFVGKIPRD----------LYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYE 123 (578)
T ss_pred CCCCCEEEeCCCCCC----------CCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCe
Confidence 345799999999999 999999999999999999999999 789999999999999999999999999998
Q ss_pred ec-CeEEEEEEe
Q 027685 114 LL-GRELTVVFA 124 (220)
Q Consensus 114 i~-g~~l~v~~a 124 (220)
|. |+.|.|.++
T Consensus 124 i~~Gr~l~V~~S 135 (578)
T TIGR01648 124 IRPGRLLGVCIS 135 (578)
T ss_pred ecCCcccccccc
Confidence 85 666666544
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=6.7e-14 Score=93.50 Aligned_cols=71 Identities=39% Similarity=0.618 Sum_probs=66.2
Q ss_pred EccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEE
Q 027685 42 VRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121 (220)
Q Consensus 42 V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 121 (220)
|.|||.. +++++|+++|.+||.|..|.|..+..++.+.++|||+|.+.++|+.|++.|++..|.|..|.|
T Consensus 1 i~~l~~~----------~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPD----------VTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcc----------cCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5789999 999999999999999999999988777888999999999999999999999999999999887
Q ss_pred E
Q 027685 122 V 122 (220)
Q Consensus 122 ~ 122 (220)
+
T Consensus 71 ~ 71 (71)
T smart00360 71 K 71 (71)
T ss_pred C
Confidence 3
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=3.9e-14 Score=127.17 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=71.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCH--HHHHHHHHhhCCcee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP--ADAADAKYHMDGYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~a~~Al~~l~g~~i 114 (220)
..+|||+||++. +++++|..+|..||.|..|.|+. .+| +|||||+|... .++.+||..|||..+
T Consensus 10 gMRIYVGNLSyd----------VTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 10 GVRLHVGGLGES----------VGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred ceEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 578999999999 99999999999999999999994 466 99999999977 789999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
.|..|+|+.|++.
T Consensus 76 KGR~LKVNKAKP~ 88 (759)
T PLN03213 76 KGGRLRLEKAKEH 88 (759)
T ss_pred cCceeEEeeccHH
Confidence 9999999998754
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=7.2e-14 Score=131.25 Aligned_cols=83 Identities=33% Similarity=0.515 Sum_probs=77.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+||+.. +++++|+++|.+||.|..|.|+.+ .++..+|||||+|.+.++|++||..|||..|
T Consensus 283 ~~~~~l~V~nl~~~----------~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~ 351 (562)
T TIGR01628 283 AQGVNLYVKNLDDT----------VTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRML 351 (562)
T ss_pred cCCCEEEEeCCCCc----------cCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCee
Confidence 45678999999999 999999999999999999999988 6789999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|.+|..+.
T Consensus 352 ~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 352 GGKPLYVALAQRKE 365 (562)
T ss_pred CCceeEEEeccCcH
Confidence 99999999998654
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=115.04 Aligned_cols=80 Identities=40% Similarity=0.565 Sum_probs=76.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||+. +++++|.++|.+||.|..|.|+.+..++..+|||||+|.+.++|..||..|++..|.|
T Consensus 115 ~~~l~v~nL~~~----------~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~ 184 (306)
T COG0724 115 NNTLFVGNLPYD----------VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG 184 (306)
T ss_pred CceEEEeCCCCC----------CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence 589999999999 9999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEEecc
Q 027685 117 RELTVVFAEE 126 (220)
Q Consensus 117 ~~l~v~~a~~ 126 (220)
..|.|.++..
T Consensus 185 ~~~~v~~~~~ 194 (306)
T COG0724 185 RPLRVQKAQP 194 (306)
T ss_pred ceeEeecccc
Confidence 9999999753
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.7e-13 Score=114.62 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=78.2
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
...+|||-||.++ +.|..||++|.+||.|.+|+|+.|..|.+++|||||.+.+.++|..||..|||..|.
T Consensus 277 ~g~ciFvYNLspd----------~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 277 GGWCIFVYNLSPD----------ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred CeeEEEEEecCCC----------chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 3679999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeccC
Q 027685 116 GRELTVVFAEEN 127 (220)
Q Consensus 116 g~~l~v~~a~~~ 127 (220)
++.|.|.|...+
T Consensus 347 ~rvLQVsFKtnk 358 (360)
T KOG0145|consen 347 DRVLQVSFKTNK 358 (360)
T ss_pred ceEEEEEEecCC
Confidence 999999997654
No 35
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=3.1e-13 Score=91.13 Aligned_cols=74 Identities=41% Similarity=0.642 Sum_probs=68.1
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
+|+|.|||+. +++++|+++|+.||.|..+.+..+..+ .+.++|||+|.+.++|+.|++.|++..+.|..
T Consensus 1 ~i~i~~l~~~----------~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~ 69 (74)
T cd00590 1 TLFVGNLPPD----------VTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRP 69 (74)
T ss_pred CEEEeCCCCc----------cCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 5899999999 999999999999999999999977544 66899999999999999999999999999999
Q ss_pred EEEEE
Q 027685 119 LTVVF 123 (220)
Q Consensus 119 l~v~~ 123 (220)
|.|.+
T Consensus 70 ~~v~~ 74 (74)
T cd00590 70 LRVEF 74 (74)
T ss_pred EEEeC
Confidence 99864
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=113.58 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=70.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..+|||+||++. +|+++|.+||..||+|..|.|+.+. ...+||||+|.+.+.|+.|| .|+|..|.+
T Consensus 5 g~TV~V~NLS~~----------tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d 70 (243)
T PLN03121 5 GYTAEVTNLSPK----------ATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVD 70 (243)
T ss_pred ceEEEEecCCCC----------CCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCC
Confidence 579999999999 9999999999999999999999874 44579999999999999999 889999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|..+...
T Consensus 71 ~~I~It~~~~y 81 (243)
T PLN03121 71 QRVCITRWGQY 81 (243)
T ss_pred ceEEEEeCccc
Confidence 99999876643
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=7.7e-14 Score=126.29 Aligned_cols=86 Identities=29% Similarity=0.483 Sum_probs=81.3
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
+.|||+|||++ +++++|.++|++.|.|..+.++.|..||.++||||++|.+.++|+.|+..|||.++.|+
T Consensus 19 ~~v~vgnip~~----------~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 19 SSVFVGNIPYE----------GSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cceEecCCCCc----------ccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 89999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCCCch
Q 027685 118 ELTVVFAEENRKKPSE 133 (220)
Q Consensus 118 ~l~v~~a~~~~~~~~~ 133 (220)
+|+|+|+.........
T Consensus 89 ~l~v~~~~~~~~~~~~ 104 (435)
T KOG0108|consen 89 KLRVNYASNRKNAERS 104 (435)
T ss_pred eEEeecccccchhHHH
Confidence 9999999876654433
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=2.8e-13 Score=125.27 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=72.9
Q ss_pred CCCCCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 34 RDLPTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..+.++|||+||++ . +++++|.++|++||.|..|.|+.+. +|||||+|.+.++|+.||..|||.
T Consensus 272 ~~~~~~l~v~nL~~~~----------vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~ 336 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEK----------VNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGV 336 (481)
T ss_pred CCCCCEEEEeCCCCCC----------CCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 34678999999998 7 9999999999999999999998752 689999999999999999999999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|.|+.|.|.+++...
T Consensus 337 ~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 337 KLFGKPLRVCPSKQQN 352 (481)
T ss_pred EECCceEEEEEccccc
Confidence 9999999999987653
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=1.9e-13 Score=127.88 Aligned_cols=75 Identities=31% Similarity=0.464 Sum_probs=69.8
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC--CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.++|||+||+++ +++++|+++|++| |+|+.|.++ ++||||+|.+.++|++||+.||+.+|
T Consensus 233 ~k~LfVgNL~~~----------~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 233 VKILYVRNLMTT----------TTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred ccEEEEeCCCCC----------CCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 578999999999 9999999999999 999999876 46999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|+|.||++...
T Consensus 295 ~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 295 EGSEIEVTLAKPVDK 309 (578)
T ss_pred CCEEEEEEEccCCCc
Confidence 999999999987543
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.2e-13 Score=113.91 Aligned_cols=85 Identities=32% Similarity=0.597 Sum_probs=80.1
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..+.|.|.-||.. +|+++|+.+|...|+|+.|+++.|+.+|+.-||+||.|.+++||++||+.|||..
T Consensus 38 ~~skTNLIvNYLPQ~----------MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr 107 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQN----------MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR 107 (360)
T ss_pred Ccccceeeeeecccc----------cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee
Confidence 345678999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|..+.|+|.||.+..
T Consensus 108 LQ~KTIKVSyARPSs 122 (360)
T KOG0145|consen 108 LQNKTIKVSYARPSS 122 (360)
T ss_pred eccceEEEEeccCCh
Confidence 999999999998653
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.1e-13 Score=113.50 Aligned_cols=78 Identities=23% Similarity=0.403 Sum_probs=73.2
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+.+|+|||+||+.. ++|++|.+.|..||.|.+|.|..+ +|||||.|.+.|.|..||..||+.+|
T Consensus 162 p~NtsVY~G~I~~~----------lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei 225 (321)
T KOG0148|consen 162 PDNTSVYVGNIASG----------LTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEI 225 (321)
T ss_pred CCCceEEeCCcCcc----------ccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCcee
Confidence 55899999999998 999999999999999999999976 89999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
.|+.|+|.|-++..
T Consensus 226 ~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 226 GGQLVRCSWGKEGD 239 (321)
T ss_pred CceEEEEeccccCC
Confidence 99999999977543
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.4e-13 Score=115.59 Aligned_cols=80 Identities=31% Similarity=0.549 Sum_probs=77.1
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
.|||+-|..+ ++-++|++.|.+||+|.+++|+.|..|++.+|||||.|.+.++|+.||..|||..|+++.
T Consensus 64 hvfvgdls~e----------I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 64 HVFVGDLSPE----------IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred eEEehhcchh----------cchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 5899999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 027685 119 LTVVFAEENR 128 (220)
Q Consensus 119 l~v~~a~~~~ 128 (220)
|..+||.-+.
T Consensus 134 IRTNWATRKp 143 (321)
T KOG0148|consen 134 IRTNWATRKP 143 (321)
T ss_pred eeccccccCc
Confidence 9999998654
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=7.5e-13 Score=122.45 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=68.6
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh--CCcee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM--DGYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l--~g~~i 114 (220)
..+|||+|||+. +++++|.++|++||.|..|.|+.+ ++||||+|.+.++|++||+.| ++..|
T Consensus 2 s~vv~V~nLp~~----------~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l 65 (481)
T TIGR01649 2 SPVVHVRNLPQD----------VVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYI 65 (481)
T ss_pred ccEEEEcCCCCC----------CCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceE
Confidence 579999999999 999999999999999999999854 689999999999999999874 78899
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
.|+.|.|+|+...
T Consensus 66 ~g~~l~v~~s~~~ 78 (481)
T TIGR01649 66 RGQPAFFNYSTSQ 78 (481)
T ss_pred cCeEEEEEecCCc
Confidence 9999999998643
No 44
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=2.1e-12 Score=84.76 Aligned_cols=56 Identities=36% Similarity=0.603 Sum_probs=50.8
Q ss_pred HHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEe
Q 027685 64 LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124 (220)
Q Consensus 64 L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 124 (220)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|+..|||..|.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998642 589999999999999999999999999999999986
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=7.5e-13 Score=117.60 Aligned_cols=76 Identities=33% Similarity=0.530 Sum_probs=70.3
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
-+.|||.||+.+ ||||.|+++|.+||.|..|+.+.| ||||.|.+.++|.+||+.|||++|+|
T Consensus 259 VKvLYVRNL~~~----------tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG 320 (506)
T KOG0117|consen 259 VKVLYVRNLMES----------TTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDG 320 (506)
T ss_pred eeeeeeeccchh----------hhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecC
Confidence 467999999999 999999999999999999988744 99999999999999999999999999
Q ss_pred eEEEEEEeccCCCC
Q 027685 117 RELTVVFAEENRKK 130 (220)
Q Consensus 117 ~~l~v~~a~~~~~~ 130 (220)
..|.|.+|++..+.
T Consensus 321 ~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 321 SPIEVTLAKPVDKK 334 (506)
T ss_pred ceEEEEecCChhhh
Confidence 99999999976543
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=3.3e-12 Score=87.89 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=54.3
Q ss_pred HHHHHHHhc----CCCceEEEE-ecccCCC--CCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEE
Q 027685 61 PEDLRGPFG----QFGRLKDIY-LPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121 (220)
Q Consensus 61 e~~L~~~f~----~~G~i~~v~-i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 121 (220)
+++|.++|. +||.|..|. |+.+..+ +..+|||||+|.+.++|++||+.|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 6666655 889999999999999999999999999999999986
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=8.6e-13 Score=111.79 Aligned_cols=73 Identities=29% Similarity=0.565 Sum_probs=69.1
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
+.+|||+|||.. +++.+|+.+|++||+|.+|+|+ +.||||..++...|+.||..|||..|+|
T Consensus 2 ~~KLFIGNLp~~----------~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg 63 (346)
T KOG0109|consen 2 PVKLFIGNLPRE----------ATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHG 63 (346)
T ss_pred ccchhccCCCcc----------cchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecc
Confidence 458999999999 9999999999999999999999 5599999999999999999999999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
..|+|+-++.+
T Consensus 64 ~nInVeaSksK 74 (346)
T KOG0109|consen 64 VNINVEASKSK 74 (346)
T ss_pred eEEEEEecccc
Confidence 99999998876
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.6e-12 Score=116.64 Aligned_cols=81 Identities=32% Similarity=0.580 Sum_probs=73.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
...|+|.|||+. +...+|+.+|+.||.|..|.|+....+ ...|||||+|....+|..||+.||+.+|+|
T Consensus 117 k~rLIIRNLPf~----------~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcGFaFV~fk~~~dA~~Al~~~N~~~i~g 185 (678)
T KOG0127|consen 117 KWRLIIRNLPFK----------CKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCGFAFVQFKEKKDAEKALEFFNGNKIDG 185 (678)
T ss_pred cceEEeecCCcc----------cCcHHHHHHHhhcceEEEEEcccCCCC-CccceEEEEEeeHHHHHHHHHhccCceecC
Confidence 568999999999 999999999999999999999976544 445999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
++|.|.||-++.
T Consensus 186 R~VAVDWAV~Kd 197 (678)
T KOG0127|consen 186 RPVAVDWAVDKD 197 (678)
T ss_pred ceeEEeeecccc
Confidence 999999996543
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=5e-12 Score=92.23 Aligned_cols=80 Identities=31% Similarity=0.512 Sum_probs=72.2
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
....|||.|||.. +|.+++-++|.+||.|..|.|-..+ ..+|-|||.|++..+|.+|++.|.|..+.
T Consensus 17 vnriLyirNLp~~----------ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 17 VNRILYIRNLPFK----------ITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred hheeEEEecCCcc----------ccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 3567999999999 9999999999999999999987644 55899999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
+..|.|-+.++..
T Consensus 84 ~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 84 NRYLVVLYYQPED 96 (124)
T ss_pred CceEEEEecCHHH
Confidence 9999998876543
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.2e-12 Score=115.91 Aligned_cols=86 Identities=30% Similarity=0.549 Sum_probs=77.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce-ec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~-i~ 115 (220)
..+|||+.|+.. +||.+|.++|.+||.|++|.|+.|. .+..+|||||+|.+.+.|..||+.|||.. +.
T Consensus 124 e~KLFvg~lsK~----------~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 124 ERKLFVGMLSKQ----------CTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred chhhhhhhcccc----------ccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 678999999999 9999999999999999999999985 67899999999999999999999999974 55
Q ss_pred C--eEEEEEEeccCCCCCch
Q 027685 116 G--RELTVVFAEENRKKPSE 133 (220)
Q Consensus 116 g--~~l~v~~a~~~~~~~~~ 133 (220)
| .+|.|+||.+++.+..+
T Consensus 193 Gcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 193 GCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred cCCCceEEEecccCCCchHH
Confidence 4 68999999988776544
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.7e-12 Score=109.01 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+..|+|||-.||.+ ....+|..+|-.||.|+..++..|..|...++|+||.|.+...|+.||.+|||..|
T Consensus 283 PeGCNlFIYHLPQE----------FgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI 352 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQE----------FGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI 352 (371)
T ss_pred CCcceEEEEeCchh----------hccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh
Confidence 45899999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+-+.|+|.+..++.
T Consensus 353 GMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 353 GMKRLKVQLKRPKD 366 (371)
T ss_pred hhhhhhhhhcCccc
Confidence 99999999877654
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.8e-12 Score=113.64 Aligned_cols=84 Identities=27% Similarity=0.495 Sum_probs=75.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce-ec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~-i~ 115 (220)
.-+|||+.||.. ++|.||+++|++||.|.+|.|++|+.|+..+|||||.|.+.++|.+|+.+|++.. |-
T Consensus 34 ~vKlfVgqIprt----------~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 34 AVKLFVGQIPRT----------ASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred hhhheeccCCcc----------ccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 457999999999 9999999999999999999999999999999999999999999999999999875 54
Q ss_pred C--eEEEEEEeccCCCC
Q 027685 116 G--RELTVVFAEENRKK 130 (220)
Q Consensus 116 g--~~l~v~~a~~~~~~ 130 (220)
| .+|.|.+|.....+
T Consensus 104 G~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERER 120 (510)
T ss_pred CCCcceeecccchhhhc
Confidence 4 67888888755443
No 53
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.9e-12 Score=111.14 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=78.8
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.++...|||..|.+. +|.++|.-+|+.||+|..|.|+.|..||....||||+|++.+.|++|.-.|++..
T Consensus 236 ~PPeNVLFVCKLNPV----------TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPV----------TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred CCCcceEEEEecCCc----------ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 456788999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEecc
Q 027685 114 LLGRELTVVFAEE 126 (220)
Q Consensus 114 i~g~~l~v~~a~~ 126 (220)
|+++.|.|.|+..
T Consensus 306 IDDrRIHVDFSQS 318 (479)
T KOG0415|consen 306 IDDRRIHVDFSQS 318 (479)
T ss_pred eccceEEeehhhh
Confidence 9999999999763
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=9.3e-12 Score=113.08 Aligned_cols=83 Identities=33% Similarity=0.484 Sum_probs=76.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh-----
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM----- 109 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l----- 109 (220)
+...||||.|||++ +|+++|.++|.+||+|..+.|+.++.|+.++|.|||.|.+..+|++||...
T Consensus 290 ~~~~tVFvRNL~fD----------~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e 359 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFD----------TTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASE 359 (678)
T ss_pred cccceEEEecCCcc----------ccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCC
Confidence 44689999999999 999999999999999999999999999999999999999999999999876
Q ss_pred CC-ceecCeEEEEEEeccC
Q 027685 110 DG-YLLLGRELTVVFAEEN 127 (220)
Q Consensus 110 ~g-~~i~g~~l~v~~a~~~ 127 (220)
.| ..|+|+.|+|..|-..
T Consensus 360 ~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 360 DGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CceEEEeccEEeeeeccch
Confidence 33 6799999999988644
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.28 E-value=5.5e-12 Score=114.54 Aligned_cols=80 Identities=34% Similarity=0.649 Sum_probs=76.0
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEE
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 119 (220)
|||+||..+ +++++|..+|+.||.|..|.+++|..||..+|||||+|.+.++|.+|+..|||.+|.|+.|
T Consensus 281 l~vgnLHfN----------ite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 281 LYVGNLHFN----------ITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLI 350 (549)
T ss_pred hhhcccccC----------chHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceE
Confidence 999999999 9999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 027685 120 TVVFAEENRK 129 (220)
Q Consensus 120 ~v~~a~~~~~ 129 (220)
+|.+.+....
T Consensus 351 kV~~v~~r~~ 360 (549)
T KOG0147|consen 351 KVSVVTERVD 360 (549)
T ss_pred EEEEeeeecc
Confidence 9988775443
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=3.4e-12 Score=111.21 Aligned_cols=77 Identities=32% Similarity=0.518 Sum_probs=74.8
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
-|.|||+.|.++ +.|+.|...|..||.|+.|.|-+|+.|++.+|||||||+-+|.|+-|++.|||.+++|
T Consensus 113 McRvYVGSIsfE----------l~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 113 MCRVYVGSISFE----------LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred hHheeeeeeEEE----------echHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 588999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEE
Q 027685 117 RELTVVF 123 (220)
Q Consensus 117 ~~l~v~~ 123 (220)
+.|+|..
T Consensus 183 RNiKVgr 189 (544)
T KOG0124|consen 183 RNIKVGR 189 (544)
T ss_pred ccccccC
Confidence 9999974
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=3.4e-11 Score=113.09 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=73.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.+||||++|+.. ++|.+|..+|+.||+|..|.|+ .+.+||||.+....+|++||.+|....|.+
T Consensus 421 SrTLwvG~i~k~----------v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 421 SRTLWVGGIPKN----------VTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeeeeeccccch----------hhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccc
Confidence 589999999999 9999999999999999999998 458999999999999999999999999999
Q ss_pred eEEEEEEeccCCCCC
Q 027685 117 RELTVVFAEENRKKP 131 (220)
Q Consensus 117 ~~l~v~~a~~~~~~~ 131 (220)
..|+|.||-.+-.+.
T Consensus 485 k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 485 KTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeEEeeeccCCcch
Confidence 999999998765544
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=8.8e-12 Score=105.73 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=72.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.+.++|+|+||.+. ++.++|+..|++||.|.+|+|+ ++|+||.|+-.++|..|+..||+.+|
T Consensus 76 k~stkl~vgNis~t----------ctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 76 KASTKLHVGNISPT----------CTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred CCccccccCCCCcc----------ccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhccccccc
Confidence 45789999999999 9999999999999999999999 56999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCCC
Q 027685 115 LGRELTVVFAEENRKKP 131 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~~ 131 (220)
+|+.++|++++..-...
T Consensus 138 ~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTA 154 (346)
T ss_pred ccceeeeeeeccccccC
Confidence 99999999988654433
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.22 E-value=4.2e-11 Score=106.44 Aligned_cols=78 Identities=28% Similarity=0.435 Sum_probs=71.8
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
...+||+|||++ +.|++|+++|. +.|+|++|.|..| ..|+++|+|+|||+++|.+++|++.||.+.+.
T Consensus 44 ~R~vfItNIpyd----------~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 44 DRSVFITNIPYD----------YRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred cceEEEecCcch----------hhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 345999999999 99999999996 5899999999988 47899999999999999999999999999999
Q ss_pred CeEEEEEEec
Q 027685 116 GRELTVVFAE 125 (220)
Q Consensus 116 g~~l~v~~a~ 125 (220)
|++|+|+-..
T Consensus 113 GR~l~vKEd~ 122 (608)
T KOG4212|consen 113 GRELVVKEDH 122 (608)
T ss_pred CceEEEeccC
Confidence 9999997544
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.21 E-value=4.8e-11 Score=110.57 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=60.9
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC------------CceEEEEecccCCCCCcceEEEEEeCCHHHHH
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF------------GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 103 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~------------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 103 (220)
...+|||+|||+. +|+++|.++|.++ +.|..|.+. ..++||||+|.+.++|+
T Consensus 174 ~~r~lyVgnLp~~----------~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~ 237 (509)
T TIGR01642 174 QARRLYVGGIPPE----------FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEAT 237 (509)
T ss_pred cccEEEEeCCCCC----------CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHh
Confidence 3568999999999 9999999999874 234445544 34789999999999999
Q ss_pred HHHHhhCCceecCeEEEEEEec
Q 027685 104 DAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 104 ~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
.|| .|+|+.|.|..|+|....
T Consensus 238 ~Al-~l~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 238 FAM-ALDSIIYSNVFLKIRRPH 258 (509)
T ss_pred hhh-cCCCeEeeCceeEecCcc
Confidence 999 699999999999986543
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.18 E-value=3.9e-11 Score=95.71 Aligned_cols=86 Identities=34% Similarity=0.502 Sum_probs=78.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE-EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
+.+..|||+||.+. ++|..|.+.|..||.|.. .+++.+..||++++||||.|.+.+.+.+||..|||+.
T Consensus 94 ~vganlfvgNLd~~----------vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 94 DVGANLFVGNLDPE----------VDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred cccccccccccCcc----------hhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 44678999999999 999999999999999865 4788898999999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCCC
Q 027685 114 LLGRELTVVFAEENRKK 130 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~~ 130 (220)
+...+|.|.++..+..+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999866544
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=2.9e-10 Score=92.37 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=74.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC-CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....-++|..||.. +.+.+|..+|.+| |.|..+.+..+..||+++|||||+|++.+.|+.|.+.||+..
T Consensus 47 ~~~g~~~~~~~p~g----------~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL 116 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHG----------FFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL 116 (214)
T ss_pred CCccceeecccccc----------hhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh
Confidence 34567889999999 9999999999988 778888888999999999999999999999999999999999
Q ss_pred ecCeEEEEEEeccC
Q 027685 114 LLGRELTVVFAEEN 127 (220)
Q Consensus 114 i~g~~l~v~~a~~~ 127 (220)
|.++.|.|.+-.+.
T Consensus 117 l~e~lL~c~vmppe 130 (214)
T KOG4208|consen 117 LMEHLLECHVMPPE 130 (214)
T ss_pred hhhheeeeEEeCch
Confidence 99999999887655
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.8e-10 Score=100.43 Aligned_cols=78 Identities=26% Similarity=0.505 Sum_probs=71.8
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEE
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 119 (220)
|||.||+.+ ++..+|.++|..||+|..|+++.+.. | .+|| ||+|+++++|++||+.|||..+.|+.|
T Consensus 79 ~~i~nl~~~----------~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 79 VFIKNLDES----------IDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred eeecCCCcc----------cCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 999999999 99999999999999999999998853 3 8999 999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 027685 120 TVVFAEENRKK 130 (220)
Q Consensus 120 ~v~~a~~~~~~ 130 (220)
.|.........
T Consensus 146 ~vg~~~~~~er 156 (369)
T KOG0123|consen 146 YVGLFERKEER 156 (369)
T ss_pred EEeeccchhhh
Confidence 99887765543
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=1.4e-10 Score=95.94 Aligned_cols=72 Identities=33% Similarity=0.561 Sum_probs=67.5
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
..|||++||+. +.+.+|+.||..||.|..|.|. .||+||+|++..+|..||..||+.+|.|.
T Consensus 2 ~rv~vg~~~~~----------~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e 63 (216)
T KOG0106|consen 2 PRVYIGRLPYR----------ARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGE 63 (216)
T ss_pred CceeecccCCc----------cchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecce
Confidence 46999999999 9999999999999999999987 67999999999999999999999999999
Q ss_pred EEEEEEeccC
Q 027685 118 ELTVVFAEEN 127 (220)
Q Consensus 118 ~l~v~~a~~~ 127 (220)
.|.|+++...
T Consensus 64 ~~vve~~r~~ 73 (216)
T KOG0106|consen 64 RLVVEHARGK 73 (216)
T ss_pred eeeeeccccc
Confidence 9999998854
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.05 E-value=4.1e-10 Score=103.06 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=77.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
....+|||.+|... +...+|+.+|.+||+|+..+|+.+..+...++|+||++.+.++|.+||+.|+-.+|
T Consensus 403 ~~gRNlWVSGLSst----------TRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 403 TLGRNLWVSGLSST----------TRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred ccccceeeeccccc----------hhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 34568999999999 99999999999999999999999887777899999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
.|+.|.|+-++...
T Consensus 473 HGrmISVEkaKNEp 486 (940)
T KOG4661|consen 473 HGRMISVEKAKNEP 486 (940)
T ss_pred cceeeeeeecccCc
Confidence 99999999887544
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.03 E-value=9.6e-10 Score=90.47 Aligned_cols=81 Identities=25% Similarity=0.496 Sum_probs=72.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHH----HhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRG----PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~----~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.+..||||.||+.. +..++|+. +|++||+|..|.... +.+.+|-|||.|.+.+.|-.|+..|+
T Consensus 7 ~pn~TlYInnLnek----------I~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~ 73 (221)
T KOG4206|consen 7 NPNGTLYINNLNEK----------IKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQ 73 (221)
T ss_pred CCCceEeehhcccc----------ccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhc
Confidence 34459999999999 99998888 999999999998774 55789999999999999999999999
Q ss_pred CceecCeEEEEEEeccCC
Q 027685 111 GYLLLGRELTVVFAEENR 128 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~~ 128 (220)
|..|.|+++.|+||+.+.
T Consensus 74 gfpFygK~mriqyA~s~s 91 (221)
T KOG4206|consen 74 GFPFYGKPMRIQYAKSDS 91 (221)
T ss_pred CCcccCchhheecccCcc
Confidence 999999999999998654
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=7.9e-10 Score=103.21 Aligned_cols=79 Identities=32% Similarity=0.505 Sum_probs=70.0
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCC---CcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTG---EPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.++|||.||+++ +|.++|..+|..+|.|..|.|...+... .+.|||||+|.+.++|+.|+..|+|+.
T Consensus 515 ~t~lfvkNlnf~----------Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv 584 (725)
T KOG0110|consen 515 ETKLFVKNLNFD----------TTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV 584 (725)
T ss_pred chhhhhhcCCcc----------cchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce
Confidence 455999999999 9999999999999999999887654221 133999999999999999999999999
Q ss_pred ecCeEEEEEEec
Q 027685 114 LLGRELTVVFAE 125 (220)
Q Consensus 114 i~g~~l~v~~a~ 125 (220)
|+|+.|.|.++.
T Consensus 585 ldGH~l~lk~S~ 596 (725)
T KOG0110|consen 585 LDGHKLELKISE 596 (725)
T ss_pred ecCceEEEEecc
Confidence 999999999988
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1e-09 Score=95.20 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=69.2
Q ss_pred CCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh-hC
Q 027685 32 RGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH-MD 110 (220)
Q Consensus 32 ~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~-l~ 110 (220)
..+...++|||++|-.. ++|.+|.++|.+||+|..|.++.. +++|||+|.+.+.|+.|... ++
T Consensus 223 PeD~~I~tLyIg~l~d~----------v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDE----------VLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred CcccceeEEEecccccc----------hhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc
Confidence 34455789999999889 999999999999999999998854 67999999999999988765 56
Q ss_pred CceecCeEEEEEEecc
Q 027685 111 GYLLLGRELTVVFAEE 126 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~ 126 (220)
...|+|..|+|.|..+
T Consensus 287 ~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 287 KLVINGFRLKIKWGRP 302 (377)
T ss_pred eeeecceEEEEEeCCC
Confidence 6679999999999887
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=3.7e-10 Score=98.51 Aligned_cols=82 Identities=30% Similarity=0.430 Sum_probs=73.8
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||++|+|+ ++++.|.+.|.+||+|.+|.++.|+.++..++|+||+|++.+.+.++|.. .-+.|+
T Consensus 5 ~~~KlfiGgisw~----------ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~d 73 (311)
T KOG4205|consen 5 ESGKLFIGGLSWE----------TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLD 73 (311)
T ss_pred CCcceeecCcCcc----------ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccC
Confidence 5899999999999 99999999999999999999999999999999999999999988888844 567899
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.++-|.+..
T Consensus 74 gr~ve~k~av~r~ 86 (311)
T KOG4205|consen 74 GRSVEPKRAVSRE 86 (311)
T ss_pred CccccceeccCcc
Confidence 9998887776543
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.98 E-value=1.1e-09 Score=97.50 Aligned_cols=77 Identities=27% Similarity=0.434 Sum_probs=68.9
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....|+|||.|||.+ +||+.|++-|..||.|.++.|+ ..|+.+| .|.|.++++|+.|+..|+|.
T Consensus 532 aarKa~qIiirNlP~d----------fTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs 596 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFD----------FTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGS 596 (608)
T ss_pred ccccccEEEEecCCcc----------ccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccC
Confidence 3455799999999999 9999999999999999999884 3556655 89999999999999999999
Q ss_pred eecCeEEEEEEe
Q 027685 113 LLLGRELTVVFA 124 (220)
Q Consensus 113 ~i~g~~l~v~~a 124 (220)
.|+|+.|+|.|.
T Consensus 597 ~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 597 RLDGRNIKVTYF 608 (608)
T ss_pred cccCceeeeeeC
Confidence 999999999874
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.97 E-value=2.2e-09 Score=90.49 Aligned_cols=81 Identities=27% Similarity=0.352 Sum_probs=74.3
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
+++|+|.|||+. |+++||+++|.+||.+..+.|.++. .|...|.|-|.|...++|+.||+.|+|..|+|
T Consensus 83 ~~~v~v~NL~~~----------V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG 151 (243)
T KOG0533|consen 83 STKVNVSNLPYG----------VIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDG 151 (243)
T ss_pred cceeeeecCCcC----------cchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCC
Confidence 478999999999 9999999999999999998888874 78889999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
..|++++.....
T Consensus 152 ~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 152 RPMKIEIISSPS 163 (243)
T ss_pred ceeeeEEecCcc
Confidence 999998876544
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=8.6e-10 Score=96.23 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=76.8
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..+|||++||.+ +++++|+++|.+||.|..+.++.|..+...++|+||+|.+++.+.+++ ...-+.|+|
T Consensus 97 tkkiFvGG~~~~----------~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~g 165 (311)
T KOG4205|consen 97 TKKIFVGGLPPD----------TTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNG 165 (311)
T ss_pred eeEEEecCcCCC----------CchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecC
Confidence 568999999999 999999999999999999999999999999999999999999999988 447889999
Q ss_pred eEEEEEEeccCCCCC
Q 027685 117 RELTVVFAEENRKKP 131 (220)
Q Consensus 117 ~~l~v~~a~~~~~~~ 131 (220)
+.|+|..|.++....
T Consensus 166 k~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 166 KKVEVKRAIPKEVMQ 180 (311)
T ss_pred ceeeEeeccchhhcc
Confidence 999999998766543
No 73
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=4.1e-10 Score=92.34 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 32 RGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 32 ~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
.+++...||||.||... ++|+.|.++|-+.|.|..|.|+.+. +++.+ ||||.|.++..+.-|++.|||
T Consensus 4 aaae~drtl~v~n~~~~----------v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng 71 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSG----------VSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENG 71 (267)
T ss_pred CCcchhhHHHHHhhhhh----------hhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhccc
Confidence 35567889999999999 9999999999999999999998765 45555 999999999999999999999
Q ss_pred ceecCeEEEEEEecc
Q 027685 112 YLLLGRELTVVFAEE 126 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~ 126 (220)
..|.+..|.|.+-..
T Consensus 72 ~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 72 DDLEEDEEQRTLRCG 86 (267)
T ss_pred chhccchhhcccccC
Confidence 999999988877543
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.1e-09 Score=92.35 Aligned_cols=83 Identities=27% Similarity=0.482 Sum_probs=73.3
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce-ec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL-LL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~-i~ 115 (220)
..+|||+.|... -.|+|+..+|..||.|.+|.+.... +|..+|+|||.|.+..||+.||..|+|.. +-
T Consensus 19 drklfvgml~kq----------q~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp 87 (371)
T KOG0146|consen 19 DRKLFVGMLNKQ----------QSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMP 87 (371)
T ss_pred chhhhhhhhccc----------ccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCC
Confidence 678999999999 9999999999999999999998764 68889999999999999999999999964 44
Q ss_pred C--eEEEEEEeccCCCC
Q 027685 116 G--RELTVVFAEENRKK 130 (220)
Q Consensus 116 g--~~l~v~~a~~~~~~ 130 (220)
| ..|.|+|+...+++
T Consensus 88 GASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 88 GASSSLVVKFADTDKER 104 (371)
T ss_pred CCccceEEEeccchHHH
Confidence 4 57899998876543
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=7.5e-10 Score=103.36 Aligned_cols=82 Identities=34% Similarity=0.643 Sum_probs=75.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|+|.|||.. ++..+|+++|..||.|..|.|+.....+...|||||+|-+..+|.+|+++|..+.|.|
T Consensus 613 ~tKIlVRNipFe----------At~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 613 GTKILVRNIPFE----------ATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred cceeeeeccchH----------HHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec
Confidence 468999999999 9999999999999999999999875555679999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.++||....
T Consensus 683 RrLVLEwA~~d~ 694 (725)
T KOG0110|consen 683 RRLVLEWAKSDN 694 (725)
T ss_pred hhhheehhccch
Confidence 999999998654
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.3e-09 Score=93.72 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
-..|||..+.++ ++|+||+.+|+.||+|..|.+..++.++..+||+||||.+......||..||-..|+|
T Consensus 210 fnRiYVaSvHpD----------LSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG 279 (544)
T KOG0124|consen 210 FNRIYVASVHPD----------LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG 279 (544)
T ss_pred hheEEeeecCCC----------ccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhccc
Confidence 468999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEe
Q 027685 117 RELTVVFA 124 (220)
Q Consensus 117 ~~l~v~~a 124 (220)
+.|.|--+
T Consensus 280 QyLRVGk~ 287 (544)
T KOG0124|consen 280 QYLRVGKC 287 (544)
T ss_pred ceEecccc
Confidence 99998654
No 77
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=9.8e-09 Score=75.00 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=70.6
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcC--CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
|||.|.|||.. .|.++|.+++.. .|....+.|+.|..++.+.|||||.|.+.+.|....+.++|..+.
T Consensus 2 TTvMirNIPn~----------~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNK----------YTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCC----------CCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 79999999999 999999998865 477889999999999999999999999999999999999999865
Q ss_pred ----CeEEEEEEeccC
Q 027685 116 ----GRELTVVFAEEN 127 (220)
Q Consensus 116 ----g~~l~v~~a~~~ 127 (220)
.+.+.|.||.-+
T Consensus 72 ~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 72 NFNSKKVCEISYARIQ 87 (97)
T ss_pred cCCCCcEEEEehhHhh
Confidence 456778887644
No 78
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.90 E-value=1.2e-08 Score=92.21 Aligned_cols=82 Identities=27% Similarity=0.356 Sum_probs=67.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
....+|||.|||.+ +++.+|+++|.+||.|....|..-...++..+||||+|.+.+.++.||++ +-..|
T Consensus 286 ~~~~~i~V~nlP~d----------a~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~i 354 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPD----------ATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEI 354 (419)
T ss_pred ecccceEeecCCCC----------CCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-Ccccc
Confidence 33556999999999 99999999999999999776654322334449999999999999999977 67889
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
++++|.|+.....
T Consensus 355 g~~kl~Veek~~~ 367 (419)
T KOG0116|consen 355 GGRKLNVEEKRPG 367 (419)
T ss_pred CCeeEEEEecccc
Confidence 9999999876543
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.3e-09 Score=94.29 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=69.0
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
..|||+ ++ +|+..|.++|..+|.|..|.++.|. | .-|||||.|.+.++|++||++||...|.|+
T Consensus 2 ~sl~vg---~~----------v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 2 ASLYVG---PD----------VTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGK 65 (369)
T ss_pred CceecC---Cc----------CChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCc
Confidence 468888 77 9999999999999999999999998 6 899999999999999999999999999999
Q ss_pred EEEEEEeccC
Q 027685 118 ELTVVFAEEN 127 (220)
Q Consensus 118 ~l~v~~a~~~ 127 (220)
+|.|.|+...
T Consensus 66 ~~rim~s~rd 75 (369)
T KOG0123|consen 66 PIRIMWSQRD 75 (369)
T ss_pred EEEeehhccC
Confidence 9999998754
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.90 E-value=1.4e-08 Score=83.61 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecc-cCCCCCcceEEEEEeC
Q 027685 19 RYRSPSPRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPR-DYYTGEPRGFGFVQYI 97 (220)
Q Consensus 19 ~~rs~~~~~~~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~-~~~~g~~~g~afV~f~ 97 (220)
..+++++.-.--..+++.-.||||.+||.+ +...+|..+|..|-.-+.+.|.. ++..+..+-+|||+|.
T Consensus 16 s~hsvs~~~~~~~~~~~~VRTLFVSGLP~D----------vKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~ 85 (284)
T KOG1457|consen 16 SPHSVSPQLPLLADEPGAVRTLFVSGLPND----------VKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFT 85 (284)
T ss_pred CCCCCCcccccccccccccceeeeccCCcc----------cCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEec
Confidence 345555544433445566789999999999 99999999999986555555543 2222334579999999
Q ss_pred CHHHHHHHHHhhCCceec---CeEEEEEEeccCCC
Q 027685 98 DPADAADAKYHMDGYLLL---GRELTVVFAEENRK 129 (220)
Q Consensus 98 ~~~~a~~Al~~l~g~~i~---g~~l~v~~a~~~~~ 129 (220)
+.++|++|++.|||+.|+ +..|.|++|+...+
T Consensus 86 s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 86 SHQFALAAMNALNGVRFDPETGSTLHIELAKSNTK 120 (284)
T ss_pred chHHHHHHHHHhcCeeeccccCceeEeeehhcCcc
Confidence 999999999999999986 78999999986654
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.83 E-value=6.3e-09 Score=87.53 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=75.8
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
....|||+|+... +|.++|+.+|+.||.|..|.|+.+...+.+++||||+|.+.+.++.|+. |||..|.
T Consensus 100 d~~sv~v~nvd~~----------~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 100 DAPSVWVGNVDFL----------VTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CCceEEEeccccc----------cccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 3678999999999 8988899999999999999999999999999999999999999999997 9999999
Q ss_pred CeEEEEEEeccC
Q 027685 116 GRELTVVFAEEN 127 (220)
Q Consensus 116 g~~l~v~~a~~~ 127 (220)
|..|+|.+....
T Consensus 169 ~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 169 GPAIEVTLKRTN 180 (231)
T ss_pred cccceeeeeeee
Confidence 999999987765
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.81 E-value=1.4e-08 Score=88.22 Aligned_cols=86 Identities=24% Similarity=0.263 Sum_probs=75.5
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE--------EEEecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
+...++.|||.|||.+ +|.+++.++|.++|.|. .|+|..+. .|..+|-|+|.|...+.++-
T Consensus 130 ~~~~Nt~VYVsgLP~D----------iT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeL 198 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLD----------ITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVEL 198 (382)
T ss_pred ccccCceEEecCCCCc----------ccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHH
Confidence 3456788999999999 99999999999999875 36777665 48999999999999999999
Q ss_pred HHHhhCCceecCeEEEEEEeccCCC
Q 027685 105 AKYHMDGYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 105 Al~~l~g~~i~g~~l~v~~a~~~~~ 129 (220)
||+.|++..|.|+.|.|+.|+-+.+
T Consensus 199 A~~ilDe~~~rg~~~rVerAkfq~K 223 (382)
T KOG1548|consen 199 AIKILDEDELRGKKLRVERAKFQMK 223 (382)
T ss_pred HHHHhCcccccCcEEEEehhhhhhc
Confidence 9999999999999999999875443
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.80 E-value=1.7e-08 Score=94.51 Aligned_cols=92 Identities=25% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCC---CCCcceEEEEEeCCHHH
Q 027685 25 PRGHYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYY---TGEPRGFGFVQYIDPAD 101 (220)
Q Consensus 25 ~~~~~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~ 101 (220)
.+.+.=..+.+..++|||+||++. ++++.|...|+.||+|..|+|++... ......+|||.|-+..+
T Consensus 162 ~~~gsfDdgDP~TTNlyv~Nlnps----------v~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D 231 (877)
T KOG0151|consen 162 GRPGSFDDGDPQTTNLYVGNLNPS----------VDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRAD 231 (877)
T ss_pred CCCCcCCCCCCcccceeeecCCcc----------ccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhh
Confidence 333444456677889999999999 99999999999999999999887432 23456799999999999
Q ss_pred HHHHHHhhCCceecCeEEEEEEecc
Q 027685 102 AADAKYHMDGYLLLGRELTVVFAEE 126 (220)
Q Consensus 102 a~~Al~~l~g~~i~g~~l~v~~a~~ 126 (220)
|++|++.|+|..|.+..+++.|++.
T Consensus 232 ~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 232 AERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred HHHHHHHhcceeeeeeeeeeccccc
Confidence 9999999999999999999999853
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.4e-08 Score=92.85 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=63.9
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
...+|+|.|||.. +++++|..+|+.||+|..|.+... ..+.+||+|.+.-+|+.|+++|++.+|.
T Consensus 74 ~~~~L~v~nl~~~----------Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 74 NQGTLVVFNLPRS----------VSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred ccceEEEEecCCc----------CCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 3568999999999 999999999999999999876553 4789999999999999999999999999
Q ss_pred CeEEE
Q 027685 116 GRELT 120 (220)
Q Consensus 116 g~~l~ 120 (220)
|+.|+
T Consensus 139 ~~~~k 143 (549)
T KOG4660|consen 139 GKRIK 143 (549)
T ss_pred hhhhc
Confidence 98887
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.61 E-value=2.3e-07 Score=82.35 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=71.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
++.|.|.||.... +|.+.|..+|..||+|..|+|..++ +.-|+|+|.+...|+-|++.|+|+.|.|
T Consensus 297 n~vllvsnln~~~---------VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~g 362 (492)
T KOG1190|consen 297 NVVLLVSNLNEEA---------VTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYG 362 (492)
T ss_pred ceEEEEecCchhc---------cchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecC
Confidence 5788899998875 9999999999999999999999753 4679999999999999999999999999
Q ss_pred eEEEEEEeccCCC
Q 027685 117 RELTVVFAEENRK 129 (220)
Q Consensus 117 ~~l~v~~a~~~~~ 129 (220)
+.|.|.+++-...
T Consensus 363 k~lrvt~SKH~~v 375 (492)
T KOG1190|consen 363 KKLRVTLSKHTNV 375 (492)
T ss_pred ceEEEeeccCccc
Confidence 9999999885543
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=4.1e-08 Score=90.15 Aligned_cols=84 Identities=29% Similarity=0.441 Sum_probs=78.2
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...+.|||++||.. +++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||+.+
T Consensus 287 ~~~~ki~v~~lp~~----------l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLY----------LTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred cccchhhhccCcCc----------cCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh
Confidence 44678999999999 99999999999999999999999998999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
++.+|.|..|....
T Consensus 357 gd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 357 GDKKLVVQRAIVGA 370 (500)
T ss_pred cCceeEeehhhccc
Confidence 99999999887544
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.56 E-value=6.7e-08 Score=84.38 Aligned_cols=85 Identities=27% Similarity=0.317 Sum_probs=76.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE--------EEEecccCCCCCcceEEEEEeCCHHHHHHH
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAADA 105 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 105 (220)
.....+|||.+||.. +++++|.++|.++|.|. .|+|-.+..|+.+++-|.|.|.+...|++|
T Consensus 63 ~s~~~ti~v~g~~d~----------~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaa 132 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDS----------VCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAA 132 (351)
T ss_pred ccccccceeeccCcc----------chHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhh
Confidence 344678999999999 99999999999999885 467778889999999999999999999999
Q ss_pred HHhhCCceecCeEEEEEEeccCC
Q 027685 106 KYHMDGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 106 l~~l~g~~i~g~~l~v~~a~~~~ 128 (220)
|.-+++..|.+.+|+|.+|....
T Consensus 133 i~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 133 IEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hhhhccccccCCCchhhhhhhcc
Confidence 99999999999999998876544
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.56 E-value=1.9e-07 Score=84.41 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=65.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..-|.+.+|||+ +|++||.+||+.++ |.++.++. .+|++.|-|||||.+++++++||+. +-+.+..
T Consensus 10 ~~~vr~rGLPws----------at~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~ 75 (510)
T KOG4211|consen 10 AFEVRLRGLPWS----------ATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGH 75 (510)
T ss_pred ceEEEecCCCcc----------ccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCC
Confidence 556889999999 99999999999984 77777765 4789999999999999999999965 7788888
Q ss_pred eEEEEEEecc
Q 027685 117 RELTVVFAEE 126 (220)
Q Consensus 117 ~~l~v~~a~~ 126 (220)
+-|+|--+..
T Consensus 76 RYIEVf~~~~ 85 (510)
T KOG4211|consen 76 RYIEVFTAGG 85 (510)
T ss_pred ceEEEEccCC
Confidence 8888876643
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.1e-07 Score=78.77 Aligned_cols=69 Identities=32% Similarity=0.461 Sum_probs=62.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
-..+.|+|.+|+.. +.+++|.++|.++|++.+..+. .+++||+|.+.++|..||..|++..|
T Consensus 97 ~s~~r~~~~~~~~r----------~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLR----------VSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred cccceeeeccchhh----------hhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhh
Confidence 44788999999999 9999999999999999655442 67999999999999999999999999
Q ss_pred cCeEEEE
Q 027685 115 LGRELTV 121 (220)
Q Consensus 115 ~g~~l~v 121 (220)
.++.|+|
T Consensus 159 ~~~~l~~ 165 (216)
T KOG0106|consen 159 NGRRISV 165 (216)
T ss_pred cCceeee
Confidence 9999998
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.37 E-value=8.8e-07 Score=65.78 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=45.5
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC-----c
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-----Y 112 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g-----~ 112 (220)
+.|+|.++... ++.++|+++|.+||.|.+|.+... ...|||-|.+.+.|+.|+..+.. .
T Consensus 2 ~il~~~g~~~~----------~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~ 65 (105)
T PF08777_consen 2 CILKFSGLGEP----------TSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKL 65 (105)
T ss_dssp -EEEEEE--SS------------HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B
T ss_pred eEEEEecCCCC----------cCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCce
Confidence 67899999999 999999999999999999999854 45799999999999999987643 3
Q ss_pred eecCeEEEEEEe
Q 027685 113 LLLGRELTVVFA 124 (220)
Q Consensus 113 ~i~g~~l~v~~a 124 (220)
.|.+..+++.+-
T Consensus 66 ~i~~~~~~~~vL 77 (105)
T PF08777_consen 66 KIKGKEVTLEVL 77 (105)
T ss_dssp -TTSSSEEEE--
T ss_pred EEcCceEEEEEC
Confidence 567777766653
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.36 E-value=4.4e-07 Score=76.16 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=73.4
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
....||.+.|..+ ++.+.|-..|.+|-......++.+..||+.+||+||.|.+..++..|+..|+|..++
T Consensus 189 ~DfRIfcgdlgNe----------vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 189 DDFRIFCGDLGNE----------VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred ccceeeccccccc----------ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 3678999999999 999999999999988778889999999999999999999999999999999999999
Q ss_pred CeEEEEEEec
Q 027685 116 GRELTVVFAE 125 (220)
Q Consensus 116 g~~l~v~~a~ 125 (220)
.+.|++.-+.
T Consensus 259 srpiklRkS~ 268 (290)
T KOG0226|consen 259 SRPIKLRKSE 268 (290)
T ss_pred cchhHhhhhh
Confidence 9999875444
No 92
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=3.2e-06 Score=68.09 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH
Q 027685 28 HYGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 28 ~~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 107 (220)
..++..+.....|.|.+||+. .+|++|++++.+-|+|.+..+..| ++++|+|...++++-||.
T Consensus 106 ~rgppsrrSe~RVvVsGLp~S----------gSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr 168 (241)
T KOG0105|consen 106 RRGPPSRRSEYRVVVSGLPPS----------GSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVR 168 (241)
T ss_pred ccCCcccccceeEEEecCCCC----------CchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHH
Confidence 344555666788999999999 999999999999999999988765 589999999999999999
Q ss_pred hhCCceecC
Q 027685 108 HMDGYLLLG 116 (220)
Q Consensus 108 ~l~g~~i~g 116 (220)
.|+...+..
T Consensus 169 ~ld~~~~~s 177 (241)
T KOG0105|consen 169 KLDDQKFRS 177 (241)
T ss_pred hhccccccC
Confidence 998877643
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.29 E-value=8e-06 Score=72.03 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=72.2
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...+.++|-+|...+ ++-+-|..+|-.||.|..|+++.-+ .|.|+||+.+..+++.||..||+..|
T Consensus 285 ~~g~VmMVyGLdh~k---------~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~l 350 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGK---------MNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPL 350 (494)
T ss_pred CCCcEEEEEeccccc---------cchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcc
Confidence 457889999999985 7788899999999999999998643 68999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|.+|.|.+++..-.
T Consensus 351 fG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 351 FGGKLNVCVSKQNFV 365 (494)
T ss_pred ccceEEEeecccccc
Confidence 999999999876543
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.29 E-value=2.9e-07 Score=84.22 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=72.9
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
.|||+..|+.. +++-+|.+||..+|+|..|.|+.|..++..+|.|||+|.+.+.+..|| .|.|+.+.|.
T Consensus 180 Rtvf~~qla~r----------~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~ 248 (549)
T KOG0147|consen 180 RTVFCMQLARR----------NPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV 248 (549)
T ss_pred HHHHHHHHhhc----------CCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCc
Confidence 46778888877 899999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEEEeccCC
Q 027685 118 ELTVVFAEENR 128 (220)
Q Consensus 118 ~l~v~~a~~~~ 128 (220)
+|.|......+
T Consensus 249 pv~vq~sEaek 259 (549)
T KOG0147|consen 249 PVIVQLSEAEK 259 (549)
T ss_pred eeEecccHHHH
Confidence 99998765433
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.28 E-value=2.8e-06 Score=77.03 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=64.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE-EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.....|-|.+||+. ||++||.+||+..--|.. |.|+++. .+.+.|-|||+|++.+.|++||.. |...
T Consensus 101 ~~d~vVRLRGLPfs----------cte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~ 168 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFS----------CTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HREN 168 (510)
T ss_pred CCCceEEecCCCcc----------CcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHh
Confidence 34668999999999 999999999998754444 5566664 566899999999999999999966 6677
Q ss_pred ecCeEEEEEEec
Q 027685 114 LLGRELTVVFAE 125 (220)
Q Consensus 114 i~g~~l~v~~a~ 125 (220)
|..+-|+|-.+.
T Consensus 169 iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 169 IGHRYIEVFRSS 180 (510)
T ss_pred hccceEEeehhH
Confidence 888888886553
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.22 E-value=3.6e-06 Score=59.48 Aligned_cols=71 Identities=25% Similarity=0.432 Sum_probs=47.4
Q ss_pred CeEEEccCCCCCccccccCCCCCHHH----HHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPED----LRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~----L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
+.|+|.|||.+ .+... |+.++..+| +|..| . .+.|+|.|.+++.|..|++.|+|.
T Consensus 3 s~L~V~NLP~~----------~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTN----------KDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TT----------S-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCC----------CCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhccc
Confidence 36899999999 77655 556666765 55554 2 468999999999999999999999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.+.|..|.|.|.....
T Consensus 63 dVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 63 DVFGNKISVSFSPKNR 78 (90)
T ss_dssp -SSSS--EEESS--S-
T ss_pred ccccceEEEEEcCCcc
Confidence 9999999999986543
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.16 E-value=1.9e-06 Score=71.18 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=55.0
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
+...-.||||.||..+ ++|++|+.+|+.|-...-++|... ..-..|||+|++.+.|..||..|+|.
T Consensus 206 ~~~acstlfianl~~~----------~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 206 GARACSTLFIANLGPN----------CTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cchhhhhHhhhccCCC----------CCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcc
Confidence 3344568999999999 999999999999976655555421 22458999999999999999999987
Q ss_pred ee
Q 027685 113 LL 114 (220)
Q Consensus 113 ~i 114 (220)
.|
T Consensus 272 ~~ 273 (284)
T KOG1457|consen 272 LL 273 (284)
T ss_pred ee
Confidence 75
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.09 E-value=1.3e-05 Score=66.18 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=67.1
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.++...+|+.|||.+ ++.+.|..+|.+|.....|.++... .+.|||+|.+...|..|...|++..
T Consensus 143 ~ppn~ilf~~niP~e----------s~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~ 207 (221)
T KOG4206|consen 143 APPNNILFLTNIPSE----------SESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFK 207 (221)
T ss_pred CCCceEEEEecCCcc----------hhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccce
Confidence 456778999999999 9999999999999888888887532 6899999999999999999999988
Q ss_pred ec-CeEEEEEEec
Q 027685 114 LL-GRELTVVFAE 125 (220)
Q Consensus 114 i~-g~~l~v~~a~ 125 (220)
|- ...+.|.++.
T Consensus 208 it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 208 ITKKNTMQITFAK 220 (221)
T ss_pred eccCceEEecccC
Confidence 76 7788887764
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.08 E-value=1.9e-06 Score=75.35 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC--ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
..++||+||-|. +|.+||.+.+...| .|.++++..+..+|+.+|||+|...+...+++.|+.|-..+|
T Consensus 80 k~~~YvGNL~W~----------TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 80 KYCCYVGNLLWY----------TTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred eEEEEecceeEE----------eccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 457999999999 99999999998876 567788888999999999999999999999999999999999
Q ss_pred cCeEEEEEEecc
Q 027685 115 LGRELTVVFAEE 126 (220)
Q Consensus 115 ~g~~l~v~~a~~ 126 (220)
.|+.-+|--.++
T Consensus 150 HGQ~P~V~~~NK 161 (498)
T KOG4849|consen 150 HGQSPTVLSYNK 161 (498)
T ss_pred cCCCCeeeccch
Confidence 998766654443
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.4e-05 Score=73.79 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=63.4
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
....|+|.|+|.-.= -....-..-|..+|+++|+|+++.++.+..+| .+||.|++|+++.+|+.|++.|||+.|+
T Consensus 57 ~D~vVvv~g~PvV~~----~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGP----ARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccCh----hHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec
Confidence 356789999987510 00000113477889999999999999887666 8999999999999999999999999876
Q ss_pred -CeEEEEEE
Q 027685 116 -GRELTVVF 123 (220)
Q Consensus 116 -g~~l~v~~ 123 (220)
.+++.|..
T Consensus 132 knHtf~v~~ 140 (698)
T KOG2314|consen 132 KNHTFFVRL 140 (698)
T ss_pred ccceEEeeh
Confidence 56666654
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.05 E-value=1.2e-05 Score=52.27 Aligned_cols=53 Identities=28% Similarity=0.515 Sum_probs=43.8
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
++.|-|.|++.. ..++|..+|.+||+|..+.+.. ...+.+|+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~-----------~~~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPD-----------LAEEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECch-----------HHHHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 367889999998 4456667899999999988872 2568999999999999985
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.03 E-value=1.2e-05 Score=70.13 Aligned_cols=79 Identities=24% Similarity=0.382 Sum_probs=60.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHH------HHHHhcCCCceEEEEecccCCCCC-cceE--EEEEeCCHHHHHHHHH
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPED------LRGPFGQFGRLKDIYLPRDYYTGE-PRGF--GFVQYIDPADAADAKY 107 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~------L~~~f~~~G~i~~v~i~~~~~~g~-~~g~--afV~f~~~~~a~~Al~ 107 (220)
..-|||-+|++. +..|+ -.++|.+||+|..|.|........ ..+. .||+|.+.++|..||.
T Consensus 114 KNLvYVigi~pk----------va~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa 183 (480)
T COG5175 114 KNLVYVIGIPPK----------VADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIA 183 (480)
T ss_pred cceeEEecCCCC----------CCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHH
Confidence 445889999988 55444 357899999999988765421111 1222 3999999999999999
Q ss_pred hhCCceecCeEEEEEEec
Q 027685 108 HMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 108 ~l~g~~i~g~~l~v~~a~ 125 (220)
.++|..++|+.|++.|-.
T Consensus 184 ~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 184 EVDGSLLDGRVLKATYGT 201 (480)
T ss_pred HhccccccCceEeeecCc
Confidence 999999999999998764
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.02 E-value=3.7e-05 Score=72.53 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=64.9
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE-EEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
+.|.|.|+|.+ ++-+||.+||..|-.+- .|.+. -.+.|.+.|-|.|.|++.++|..|..-|+++.|..
T Consensus 868 ~V~~~~n~Pf~----------v~l~dI~~FF~dY~~~p~sI~~r-~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 868 RVLSCNNFPFD----------VTLEDIVEFFNDYEPDPNSIRIR-RNDDGVPTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred eEEEecCCCcc----------ccHHHHHHHhcccccCCCceeEe-ecCCCCcccceeEeecCHHHHHhhhhccccCcccc
Confidence 36889999999 99999999999996554 34443 34678999999999999999999999999999999
Q ss_pred eEEEEEE
Q 027685 117 RELTVVF 123 (220)
Q Consensus 117 ~~l~v~~ 123 (220)
++|.|.+
T Consensus 937 r~V~l~i 943 (944)
T KOG4307|consen 937 RVVSLRI 943 (944)
T ss_pred eeEEEEe
Confidence 9998865
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.98 E-value=4e-05 Score=56.33 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=53.4
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEE-ecccC------CCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIY-LPRDY------YTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~-i~~~~------~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
..+.|.|-++|+. ....|.++|++||.|.+.. +..+. .......+..|+|++..+|++||..
T Consensus 5 ~~~wVtVFGfp~~-----------~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 5 SETWVTVFGFPPS-----------ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp GCCEEEEE---GG-----------GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CCeEEEEEccCHH-----------HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 3567999999997 6677889999999998764 11100 0012256889999999999999955
Q ss_pred hCCceecCe-EEEEEEecc
Q 027685 109 MDGYLLLGR-ELTVVFAEE 126 (220)
Q Consensus 109 l~g~~i~g~-~l~v~~a~~ 126 (220)
||..|.|. .+-|.++++
T Consensus 74 -NG~i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 74 -NGTIFSGSLMVGVKPCDP 91 (100)
T ss_dssp -TTEEETTCEEEEEEE-HH
T ss_pred -CCeEEcCcEEEEEEEcHH
Confidence 99999885 555777643
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.92 E-value=6.1e-05 Score=66.58 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC--eEEEEEEeccCCC
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG--RELTVVFAEENRK 129 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g--~~l~v~~a~~~~~ 129 (220)
+|.+-|..++...|+|..|.|+.. +---|+|||++.+.|++|...|||..|.. .+|+|+||++.+.
T Consensus 134 ItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 134 ITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 888999999999999999988853 23469999999999999999999998753 5899999998764
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.91 E-value=8.1e-06 Score=70.87 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=74.6
Q ss_pred CCCCeEE-EccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLL-VRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~-V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
..+.+++ |.+|+.. +++++|..+|..+|.|..|.++.+..++...+||||+|.....+..|+.. +...
T Consensus 182 ~~s~~~~~~~~~~f~----------~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~ 250 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFS----------LTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRS 250 (285)
T ss_pred Cccccceeecccccc----------cchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCc
Confidence 3355666 9999999 99999999999999999999999999999999999999999999999877 7888
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
+.+.+|.|++..+...
T Consensus 251 ~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 251 IGGRPLRLEEDEPRPK 266 (285)
T ss_pred ccCcccccccCCCCcc
Confidence 9999999988776543
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=4.1e-05 Score=70.62 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=55.4
Q ss_pred HHHHHHhcCCCceEEEEecccCCC---CCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccCC
Q 027685 62 EDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~ 128 (220)
|+++..+.+||.|..|.++.+..+ .-..|..||+|.+.++|+.|+.+|+|.+|.|+.|.+.|..+.+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 456667889999999999887322 2235678999999999999999999999999999999877544
No 108
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.79 E-value=6.1e-05 Score=67.20 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=63.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
++..+|++.|||.. ++||+|+++|.+-|......... ++.+.+|++++.+.|+|..|+..|+.+.+
T Consensus 412 PpsatlHlsnip~s----------vsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~l 477 (492)
T KOG1190|consen 412 PPSATLHLSNIPPS----------VSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYL 477 (492)
T ss_pred CchhheeeccCCcc----------cchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccC
Confidence 44569999999999 99999999999987654433221 13367999999999999999999999988
Q ss_pred cCe-EEEEEEecc
Q 027685 115 LGR-ELTVVFAEE 126 (220)
Q Consensus 115 ~g~-~l~v~~a~~ 126 (220)
++. .|.|.|++.
T Consensus 478 gen~hlRvSFSks 490 (492)
T KOG1190|consen 478 GENHHLRVSFSKS 490 (492)
T ss_pred CCCceEEEEeecc
Confidence 755 899999874
No 109
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.74 E-value=9.5e-05 Score=64.71 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=65.8
Q ss_pred CCCCeEEEccCCCC-CccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHD-SFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~-~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|.|.||-.- .|-.+.-+..--.++|.+.+.+||.|..|.|.- ..+.|.+.|.|.+.++|..||+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 44788999887321 000000000112467788899999999998873 3678999999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|+|+.|...+.....
T Consensus 339 fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKT 353 (382)
T ss_pred ecceEEEEEEeCCcc
Confidence 999999988765443
No 110
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.73 E-value=1.7e-05 Score=66.78 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=60.7
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCC--------CCcce----EEEEEeCCHHHHHHH
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYT--------GEPRG----FGFVQYIDPADAADA 105 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~--------g~~~g----~afV~f~~~~~a~~A 105 (220)
..|||.+||+. +....|.++|.+||+|-.|.|.....+ |.+.. -|+|+|.+...|..+
T Consensus 75 GVvylS~IPp~----------m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 75 GVVYLSNIPPY----------MDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred eEEEeccCCCc----------cCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 57999999999 999999999999999999998876544 22222 278999999999999
Q ss_pred HHhhCCceecCeE
Q 027685 106 KYHMDGYLLLGRE 118 (220)
Q Consensus 106 l~~l~g~~i~g~~ 118 (220)
...||+..|+|..
T Consensus 145 Ae~Lnn~~Iggkk 157 (278)
T KOG3152|consen 145 AELLNNTPIGGKK 157 (278)
T ss_pred HHHhCCCccCCCC
Confidence 9999999999864
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=9.5e-05 Score=67.65 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
=++..||||++||-- ++.++|..+|. -||.|..+-|-.|+.-+.++|-|=|+|.+...-.+||.+
T Consensus 367 lDprrTVFVGgvprp----------l~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRP----------LTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCc----------chHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 366789999999999 99999999998 699999999999988899999999999999999999965
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.60 E-value=6.6e-05 Score=66.56 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=65.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc-eEE--EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR-LKD--IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~-i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
..+|-+.+||++ ++.|+|.+||..|.. |.. |.|+.+. .|.+.|-|||+|.+.+.|.+|....+.+.
T Consensus 280 kdcvRLRGLPy~----------AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 280 KDCVRLRGLPYE----------ATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred CCeeEecCCChh----------hhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 568999999999 999999999999863 443 7777763 57889999999999999999999888888
Q ss_pred ecCeEEEEEEe
Q 027685 114 LLGRELTVVFA 124 (220)
Q Consensus 114 i~g~~l~v~~a 124 (220)
+..+.|+|--+
T Consensus 349 mk~RYiEvfp~ 359 (508)
T KOG1365|consen 349 MKSRYIEVFPC 359 (508)
T ss_pred cccceEEEeec
Confidence 88888887654
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.59 E-value=0.00028 Score=55.06 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=45.3
Q ss_pred HHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 027685 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 63 ~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 127 (220)
+|.+.|.+||+|.-|.++.+ .-+|+|.+-+.|.+|+ .|+|.+|+|+.|+|.+..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 68888999999998888843 5799999999999999 67999999999999886643
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.58 E-value=4.1e-05 Score=68.60 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=56.0
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEeccc---CCC--CC--------cceEEEEEeCCHHHH
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRD---YYT--GE--------PRGFGFVQYIDPADA 102 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~---~~~--g~--------~~g~afV~f~~~~~a 102 (220)
+..+|.+.|||.+ -.-+.|.++|..+|.|..|.|+.. +.+ +. .+-+|||+|...+.|
T Consensus 230 ~srtivaenLP~D----------h~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 230 PSRTIVAENLPLD----------HSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred ccceEEEecCCcc----------hHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 5789999999999 777999999999999999999865 222 11 245799999999999
Q ss_pred HHHHHhhCCce
Q 027685 103 ADAKYHMDGYL 113 (220)
Q Consensus 103 ~~Al~~l~g~~ 113 (220)
.+|.+.|+...
T Consensus 300 ~KA~e~~~~e~ 310 (484)
T KOG1855|consen 300 RKARELLNPEQ 310 (484)
T ss_pred HHHHHhhchhh
Confidence 99998886543
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.55 E-value=3.1e-05 Score=65.17 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=54.9
Q ss_pred HHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccCCCCC
Q 027685 62 EDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRKKP 131 (220)
Q Consensus 62 ~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~~~ 131 (220)
++|..+|. +||+|+++.|..+ ..-...|-++|.|...++|++|+..||+-.|.|++|.+++........
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 45555566 8999998876643 223457789999999999999999999999999999999987655443
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.48 E-value=0.00012 Score=68.11 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=62.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC-CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+...|||.||--- +|.-+|+++++. .|.|...+| | +.+..|||.|.+.++|.+.+.+|||+.
T Consensus 442 ~~SnvlhI~nLvRP----------FTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRP----------FTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CccceEeeeccccc----------chHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccc
Confidence 45778999999998 999999999995 555655533 3 447899999999999999999999987
Q ss_pred e---cCeEEEEEEecc
Q 027685 114 L---LGRELTVVFAEE 126 (220)
Q Consensus 114 i---~g~~l~v~~a~~ 126 (220)
+ +.+.|.|.|+..
T Consensus 506 WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 506 WPPSNPKHLIADFVRA 521 (718)
T ss_pred cCCCCCceeEeeecch
Confidence 4 578899988753
No 117
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.00031 Score=60.42 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCCCc-ceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEP-RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~~g~~-~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 127 (220)
++++++.+++||+|.+|.|...+..... .---||+|...++|.+|+--|||..|+|+.+...|.+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 3567888999999999988765322111 223699999999999999999999999999998887643
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00066 Score=62.25 Aligned_cols=64 Identities=22% Similarity=0.406 Sum_probs=49.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccC---CCCCcce---EEEEEeCCHHHHHHHHHh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDY---YTGEPRG---FGFVQYIDPADAADAKYH 108 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~---~~g~~~g---~afV~f~~~~~a~~Al~~ 108 (220)
.-..+|||++||++ ++|+.|...|..||.|. |.++... .-..++| |+|+.|+++..++..|.+
T Consensus 257 ~~S~KVFvGGlp~d----------ise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWD----------ITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccceeecCCCcc----------ccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 44789999999999 99999999999999865 5555211 1123466 999999999998877765
Q ss_pred h
Q 027685 109 M 109 (220)
Q Consensus 109 l 109 (220)
+
T Consensus 326 C 326 (520)
T KOG0129|consen 326 C 326 (520)
T ss_pred H
Confidence 4
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.42 E-value=1.3e-05 Score=71.05 Aligned_cols=74 Identities=8% Similarity=-0.038 Sum_probs=54.1
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
.||+|.+|+.. +...++.++|..+|+|....+.- +....+|.|+|........|+. ++|.++.-+
T Consensus 152 Rt~~v~sl~~~----------~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 152 RTREVQSLISA----------AILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred hhhhhhcchhh----------hcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 56778888887 88899999999999988777653 3445678899998888888884 477776644
Q ss_pred EEEEEEecc
Q 027685 118 ELTVVFAEE 126 (220)
Q Consensus 118 ~l~v~~a~~ 126 (220)
...+.+..+
T Consensus 217 hsr~ai~kP 225 (479)
T KOG4676|consen 217 HSRRAIIKP 225 (479)
T ss_pred hhhhhhcCc
Confidence 444444333
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.39 E-value=0.00035 Score=62.18 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=59.0
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCC---CCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...|.|.||.+. +|.+++..||...|+|..+.|+....+ ....-.|||.|.+...+..|. .|.+.+
T Consensus 7 ~~vIqvanisps----------at~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntv 75 (479)
T KOG4676|consen 7 LGVIQVANISPS----------ATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTV 75 (479)
T ss_pred CceeeecccCch----------hhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccce
Confidence 338999999999 999999999999999999988763322 223457999999999998886 666666
Q ss_pred ecCeEEEEE
Q 027685 114 LLGRELTVV 122 (220)
Q Consensus 114 i~g~~l~v~ 122 (220)
|-+..|.|-
T Consensus 76 fvdraliv~ 84 (479)
T KOG4676|consen 76 FVDRALIVR 84 (479)
T ss_pred eeeeeEEEE
Confidence 666665553
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.19 E-value=0.00056 Score=66.32 Aligned_cols=81 Identities=26% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....+.++|++|... +....|..+|..||.|..|.+-. ..-||+|+|++...|+.|+..|-|.
T Consensus 451 kst~ttr~~sgglg~w----------~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPW----------SPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccccceeeccCCCCCC----------ChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcC
Confidence 3455778999999998 99999999999999999988763 3569999999999999999999999
Q ss_pred eecC--eEEEEEEeccCCC
Q 027685 113 LLLG--RELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g--~~l~v~~a~~~~~ 129 (220)
.|++ +.|.|.||.+...
T Consensus 515 p~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 515 PLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred cCCCCCcccccccccCCCC
Confidence 9986 5788998875443
No 122
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.98 E-value=0.00059 Score=61.35 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=59.8
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc-eecC
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY-LLLG 116 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~-~i~g 116 (220)
.++|++||.+. ++..+|..+|...--...-.|++ ..||+||.+.+...|.+|++.|+|+ ++.|
T Consensus 2 nklyignL~p~----------~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqG 65 (584)
T KOG2193|consen 2 NKLYIGNLSPQ----------VTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQG 65 (584)
T ss_pred CcccccccCCC----------CChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcC
Confidence 46899999999 99999999998652111111221 2689999999999999999999997 5999
Q ss_pred eEEEEEEeccCCC
Q 027685 117 RELTVVFAEENRK 129 (220)
Q Consensus 117 ~~l~v~~a~~~~~ 129 (220)
..+.|++.-++..
T Consensus 66 kr~e~~~sv~kkq 78 (584)
T KOG2193|consen 66 KRQEVEHSVPKKQ 78 (584)
T ss_pred ceeeccchhhHHH
Confidence 9999998765543
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=5.8e-05 Score=72.55 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=58.9
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
+++||.||++. +.+.+|...|..+|.|..|.+......+.++|+|||+|...+++.+||...+++.++
T Consensus 668 ~~~fvsnl~~~----------~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPK----------MSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchh----------hcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 57899999999 999999999999999888877755667899999999999999999999765555544
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.86 E-value=0.00084 Score=59.73 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=51.3
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCC----CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.|-+.+||++ +++.++.+||.+- |.++.|.++.. .+|.+.|-|||.|..+++|+.||.. |...|
T Consensus 163 ivRmRGLPfd----------at~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~i 230 (508)
T KOG1365|consen 163 IVRMRGLPFD----------ATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNI 230 (508)
T ss_pred EEEecCCCCC----------cchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHH
Confidence 4667899999 9999999999743 23445555543 3688999999999999999999965 44444
Q ss_pred cCeEE
Q 027685 115 LGREL 119 (220)
Q Consensus 115 ~g~~l 119 (220)
+-+.|
T Consensus 231 GqRYI 235 (508)
T KOG1365|consen 231 GQRYI 235 (508)
T ss_pred hHHHH
Confidence 43333
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.83 E-value=0.00063 Score=65.65 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
...|+|.|+|+. .|.++|+.+|..+|.+..+.++..+ .|+++|.|||.|.+..++..++..++...+..
T Consensus 736 K~~v~i~g~pf~----------gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 KISVAISGPPFQ----------GTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhheeCCCCC----------CchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 457999999999 9999999999999999988877654 68999999999999999999998888888888
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
..+.|+++++..
T Consensus 805 ~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 805 NNGEVQVSNPER 816 (881)
T ss_pred cCccccccCCcc
Confidence 888888876643
No 126
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.81 E-value=0.00065 Score=61.77 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=62.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.+.|.|..+|... -+.++|..+|.+||+|.+|++-.. ...|+|+|.+..+|-.|. ..++..|++
T Consensus 372 hs~l~lek~~~gl---------nt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnn 435 (526)
T KOG2135|consen 372 HSPLALEKSPFGL---------NTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNN 435 (526)
T ss_pred cchhhhhccCCCC---------chHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecC
Confidence 5667777777773 567899999999999999988643 457999999999997775 568999999
Q ss_pred eEEEEEEecc
Q 027685 117 RELTVVFAEE 126 (220)
Q Consensus 117 ~~l~v~~a~~ 126 (220)
+.|+|.|-++
T Consensus 436 r~iKl~whnp 445 (526)
T KOG2135|consen 436 RFIKLFWHNP 445 (526)
T ss_pred ceeEEEEecC
Confidence 9999999876
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.80 E-value=0.0049 Score=49.90 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC-CCce---EEEEecccC--CCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FGRL---KDIYLPRDY--YTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G~i---~~v~i~~~~--~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
..++|.|.+||++ +||+++++.+.. ++.. ..+...... .......-|||.|.+.+++...+..+
T Consensus 6 ~~~KvVIR~LPP~----------LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 6 EGTKVVIRRLPPN----------LTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ---EEEEEEE-TT----------S-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred cCceEEEeCCCCC----------CCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 3568999999999 999999998877 6655 333311211 11122445899999999999999999
Q ss_pred CCceecC-----eEEEEEEeccCC
Q 027685 110 DGYLLLG-----RELTVVFAEENR 128 (220)
Q Consensus 110 ~g~~i~g-----~~l~v~~a~~~~ 128 (220)
+|+.|.+ ....|++|.-+.
T Consensus 76 ~g~~F~D~kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 76 DGHVFVDSKGNEYPAVVEFAPYQK 99 (176)
T ss_dssp TTEEEE-TTS-EEEEEEEE-SS--
T ss_pred CCcEEECCCCCCcceeEEEcchhc
Confidence 9987643 355678877543
No 128
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.78 E-value=0.0057 Score=40.92 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=44.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC---CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF---GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
+.+|+|.|+.. ++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGvd~-----------lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-----------LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-----------CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 67899999865 6889999999998 134578887652 5789999999999999765
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.0075 Score=52.20 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=55.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.+=|.|.++|+. ...-|..+|.+||+|...... ....+-+|.|.+..+|++||.. ||++|+|
T Consensus 197 D~WVTVfGFppg-----------~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-----------QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred cceEEEeccCcc-----------chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeecc
Confidence 445778888886 566788899999999876655 2245889999999999999966 9999988
Q ss_pred eEE-EEEEeccC
Q 027685 117 REL-TVVFAEEN 127 (220)
Q Consensus 117 ~~l-~v~~a~~~ 127 (220)
..+ -|.-+..+
T Consensus 259 ~vmiGVkpCtDk 270 (350)
T KOG4285|consen 259 DVMIGVKPCTDK 270 (350)
T ss_pred ceEEeeeecCCH
Confidence 654 35544433
No 130
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.63 E-value=0.00063 Score=58.31 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=56.2
Q ss_pred CCeEEEccCCCCCccccccCC--CCCHHHHHHHhcCCCceEEEEecccC-----CCCC-----cceE---------EEEE
Q 027685 37 PTSLLVRNLRHDSFSTKTYKS--ICRPEDLRGPFGQFGRLKDIYLPRDY-----YTGE-----PRGF---------GFVQ 95 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~--~~te~~L~~~f~~~G~i~~v~i~~~~-----~~g~-----~~g~---------afV~ 95 (220)
+.||++.+||+.||-.+-.-. -.+++-|...|..||.|.+|.|+... .+|+ ..|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 789999999999886665543 46788899999999999999887521 2232 3344 3456
Q ss_pred eCCHHHHHHHHHhhCCcee
Q 027685 96 YIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 96 f~~~~~a~~Al~~l~g~~i 114 (220)
|-.......|+..|.|+.+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666778888888753
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.62 E-value=0.0013 Score=62.38 Aligned_cols=79 Identities=22% Similarity=0.087 Sum_probs=62.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE-EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....+|||.+||.. +++.++.++|...-.|++ |.|...+ ++...+.|||+|..++++..|+..-+.+.
T Consensus 432 ~ag~~lyv~~lP~~----------t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y 500 (944)
T KOG4307|consen 432 GAGGALYVFQLPVM----------TPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFY 500 (944)
T ss_pred CccceEEeccCCcc----------ccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccc
Confidence 45779999999999 999999999998766765 6666554 55678899999999888888876656666
Q ss_pred ecCeEEEEEEe
Q 027685 114 LLGRELTVVFA 124 (220)
Q Consensus 114 i~g~~l~v~~a 124 (220)
++.+.|.|.-.
T Consensus 501 ~G~r~irv~si 511 (944)
T KOG4307|consen 501 PGHRIIRVDSI 511 (944)
T ss_pred cCceEEEeech
Confidence 77777887643
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.0033 Score=58.26 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=46.0
Q ss_pred CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce---ecC-eEEEEEEeccC
Q 027685 71 FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL---LLG-RELTVVFAEEN 127 (220)
Q Consensus 71 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~---i~g-~~l~v~~a~~~ 127 (220)
.|.-.++.++.|..+.++.|||||.|.+.+.+..+.+++||+. |.+ +.+.|.||.-+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 5566678899998888999999999999999999999999986 444 34456666543
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.55 E-value=0.00099 Score=58.27 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=59.7
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHH--HHhcCCCceEEEEecccCC--CC-CcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLR--GPFGQFGRLKDIYLPRDYY--TG-EPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~--~~f~~~G~i~~v~i~~~~~--~g-~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.-+||-+|+... ..+..|+ +.|.+||.|..|.+..+.. .+ ....-++|+|...++|..||...+|.
T Consensus 78 nlvyvvgl~~~~---------ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 78 NLVYVVGLPLDL---------ADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhCCCccc---------cchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 457788888772 3344443 4688999999998887651 11 12233899999999999999999999
Q ss_pred eecCeEEEEEEeccC
Q 027685 113 LLLGRELTVVFAEEN 127 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~ 127 (220)
.++|+.|++.+...+
T Consensus 149 ~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 149 VDDGRALKASLGTTK 163 (327)
T ss_pred HhhhhhhHHhhCCCc
Confidence 999998877766543
No 134
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.23 E-value=0.026 Score=40.00 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=40.8
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
-||--.+|.+ +...||.++|..||.|. |.++.| .-|||...+.+.|..|+..+..
T Consensus 10 HVFhltFPke----------WK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKE----------WKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT------------HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchH----------hhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3444459999 89999999999999976 444433 4799999999999999988864
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.14 E-value=0.029 Score=38.69 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhcCCC-----ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEe
Q 027685 58 ICRPEDLRGPFGQFG-----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124 (220)
Q Consensus 58 ~~te~~L~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 124 (220)
+++..+|..+|...+ .|-.|.|. ..|+||+... +.|+.++..|++..+.|+.|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 589999999988764 45578877 4589999875 5788899999999999999999875
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.02 E-value=0.027 Score=43.88 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=53.1
Q ss_pred CCCeEEEccCCCCCccccccCCCCC-HH---HHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICR-PE---DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~t-e~---~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
+-.||.|.=|..+ +. .+ .+...+..||+|..|.++. +.-|+|.|.+...|=.|+.+++.
T Consensus 85 PMsTIVVRWlkkn----------m~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 85 PMSTIVVRWLKKN----------MQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CceeEEeehhhhc----------CChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC
Confidence 3457777766555 33 23 4555677899999998863 56799999999999999998875
Q ss_pred ceecCeEEEEEEec
Q 027685 112 YLLLGRELTVVFAE 125 (220)
Q Consensus 112 ~~i~g~~l~v~~a~ 125 (220)
..-|..+.|.|-.
T Consensus 148 -~~pgtm~qCsWqq 160 (166)
T PF15023_consen 148 -RAPGTMFQCSWQQ 160 (166)
T ss_pred -CCCCceEEeeccc
Confidence 5567777777643
No 137
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.01 E-value=0.045 Score=37.10 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEE
Q 027685 58 ICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTV 121 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v 121 (220)
.++.++|+..|..|+- ..| ..+. .|| ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4889999999999964 333 3232 344 89999999999999999999998888765
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.93 E-value=0.0079 Score=50.95 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=53.7
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
..|+|.||..- +.-+.|.+.|..||+|....++.| ..++..+-++|+|+..-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~----------~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQG----------ASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchh----------hhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999 999999999999999986655555 357788899999999999999998774
No 139
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.78 E-value=0.032 Score=45.50 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC--CceecCeEEEEEEeccC
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD--GYLLLGRELTVVFAEEN 127 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~--g~~i~g~~l~v~~a~~~ 127 (220)
-..+.|.++|..|+.+..+.+... -+=..|.|.+.+.|..|...|+ +..|.|..|+|.|+...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 345789999999998887766632 4457899999999999999999 99999999999998544
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.68 E-value=0.0022 Score=62.35 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=63.1
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
.+.|||++||+.. +++.+|...|..+|.|..|.|.... -+.-..||||.|.+...+..|+..|.+..|.
T Consensus 371 atrTLf~Gnl~~k----------l~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 371 ATRTLFLGNLDSK----------LTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhcCcccc----------hhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccc
Confidence 3678999999999 9999999999999999999887643 2233568999999999999999888888776
Q ss_pred CeEEEEEEe
Q 027685 116 GRELTVVFA 124 (220)
Q Consensus 116 g~~l~v~~a 124 (220)
...+.+.+.
T Consensus 440 ~g~~r~glG 448 (975)
T KOG0112|consen 440 NGTHRIGLG 448 (975)
T ss_pred cCccccccc
Confidence 544444443
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.53 E-value=0.0082 Score=58.22 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce--ecCeEEEEEEeccCC
Q 027685 58 ICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL--LLGRELTVVFAEENR 128 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~--i~g~~l~v~~a~~~~ 128 (220)
+++...|..+|.+||.|..+++..+ -.+|.|+|...+.|..|+++|+|++ +-|.+.+|.+|+...
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4677789999999999999998865 4689999999999999999999987 468889999987654
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.45 E-value=0.008 Score=56.82 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.++..+|||+||... +..+.+..++..+|.|..+..+. |||++|..+.-...|+..|+...
T Consensus 37 ~~~~~~vfv~~~~~~----------~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~ 97 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYL----------VSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELN 97 (668)
T ss_pred CCCCceeEecchhhh----------hhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccC
Confidence 456789999999999 99999999999999887766552 99999999999999999999999
Q ss_pred ecCeEEEEEE
Q 027685 114 LLGRELTVVF 123 (220)
Q Consensus 114 i~g~~l~v~~ 123 (220)
++|..|.+..
T Consensus 98 ~~~~kl~~~~ 107 (668)
T KOG2253|consen 98 IDDQKLIENV 107 (668)
T ss_pred CCcchhhccc
Confidence 9998887765
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.29 E-value=0.2 Score=37.39 Aligned_cols=69 Identities=14% Similarity=0.072 Sum_probs=48.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC-CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
.++|.|-.+|+.. ++.++|..+...+ ..|..+.|+.+.. .++-.+++.|.+.+.|....+.+||+.|+
T Consensus 12 ~~~~~~l~vp~~~---------~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYM---------TPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCccc---------ccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3455554555551 5566676665555 3567888887632 34567899999999999999999999875
Q ss_pred C
Q 027685 116 G 116 (220)
Q Consensus 116 g 116 (220)
.
T Consensus 81 s 81 (110)
T PF07576_consen 81 S 81 (110)
T ss_pred C
Confidence 4
No 144
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.05 E-value=0.033 Score=51.93 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC--CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..-|.|+|.-||.+ +-+|+|+.+|.. +-++..|.+..+. -=||+|++..||+.|.+.|...
T Consensus 173 ~kRcIvilREIpet----------tp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylree 235 (684)
T KOG2591|consen 173 HKRCIVILREIPET----------TPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREE 235 (684)
T ss_pred cceeEEEEeecCCC----------ChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHH
Confidence 34678899999999 999999999975 5677888887541 2389999999999999888643
Q ss_pred --eecCeEEEEE
Q 027685 113 --LLLGRELTVV 122 (220)
Q Consensus 113 --~i~g~~l~v~ 122 (220)
+|.|++|...
T Consensus 236 vk~fqgKpImAR 247 (684)
T KOG2591|consen 236 VKTFQGKPIMAR 247 (684)
T ss_pred HHhhcCcchhhh
Confidence 4777766543
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.47 E-value=0.042 Score=47.81 Aligned_cols=81 Identities=11% Similarity=-0.018 Sum_probs=63.2
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..+++||+++.+. +.+.++..++..+|.+..+.+.........+++++|.|+..+.+..||.......+.
T Consensus 87 ~~~~~f~g~~s~~----------~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 87 SSSTFFVGELSEN----------IEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred ccccccccccccc----------hhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc
Confidence 4678999999998 888888889999998777666655556778999999999999999999664445666
Q ss_pred CeEEEEEEecc
Q 027685 116 GRELTVVFAEE 126 (220)
Q Consensus 116 g~~l~v~~a~~ 126 (220)
+..+...+.+.
T Consensus 157 ~~~~~~dl~~~ 167 (285)
T KOG4210|consen 157 GNKGEKDLNTR 167 (285)
T ss_pred cccccCccccc
Confidence 66666555443
No 146
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.37 E-value=0.072 Score=43.04 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=59.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
++++++++.+|...-| +..........+|-+|.+.....+.. ..++.-|.|.+.+.|..|...+++..|
T Consensus 8 dlp~~~~~c~i~~~VF-----~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f 76 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVF-----VNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSF 76 (193)
T ss_pred cccceeeeecccHHhh-----ccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhccc
Confidence 7788899998888722 11122334556666776666655652 355677899999999999999999999
Q ss_pred cCe-EEEEEEeccC
Q 027685 115 LGR-ELTVVFAEEN 127 (220)
Q Consensus 115 ~g~-~l~v~~a~~~ 127 (220)
.|. .|++-++...
T Consensus 77 ~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 77 NGKNELKLYFAQPG 90 (193)
T ss_pred CCCceEEEEEccCC
Confidence 998 7888777654
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.33 E-value=0.21 Score=45.65 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=57.1
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
.+.|+|-.+|.. ++-.||..|+..+- .|..|.|+.|.. .+.-.++|.|.+.++|....+.+||..|.
T Consensus 74 ~~mLcilaVP~~----------mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAY----------MTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEecccc----------ccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 678999999999 99999999998764 578899998532 23456899999999999999999999876
Q ss_pred C
Q 027685 116 G 116 (220)
Q Consensus 116 g 116 (220)
.
T Consensus 142 ~ 142 (493)
T KOG0804|consen 142 S 142 (493)
T ss_pred C
Confidence 4
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.38 E-value=0.0091 Score=53.94 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..++.|.|+|+. ..|+-|..++.+||.|.+|..+.- ..-....-|+|...+.+..||..|+|..|..
T Consensus 80 srk~Qirnippq----------l~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 80 SRKIQIRNIPPQ----------LQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred hhhhhHhcCCHH----------HHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 446889999999 999999999999999998866431 1112344578999999999999999999999
Q ss_pred eEEEEEEecc
Q 027685 117 RELTVVFAEE 126 (220)
Q Consensus 117 ~~l~v~~a~~ 126 (220)
..++|.|-..
T Consensus 147 ~~~k~~YiPd 156 (584)
T KOG2193|consen 147 QHLKVGYIPD 156 (584)
T ss_pred hhhhcccCch
Confidence 9999988653
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=1.4 Score=41.60 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=59.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC----CceEEEEecccC----------CCCC-------------
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF----GRLKDIYLPRDY----------YTGE------------- 87 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~----G~i~~v~i~~~~----------~~g~------------- 87 (220)
.....|-|.||.|+. +..++|..+|..| |.|..|.|.... ..|.
T Consensus 172 ~~T~RLAVvNMDWd~---------v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~ 242 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDR---------VKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKE 242 (650)
T ss_pred cccceeeEecccccc---------ccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcc
Confidence 345679999999986 8889999888765 578888775311 1111
Q ss_pred ------------------------cceEEEEEeCCHHHHHHHHHhhCCceecCeE--EEEEEec
Q 027685 88 ------------------------PRGFGFVQYIDPADAADAKYHMDGYLLLGRE--LTVVFAE 125 (220)
Q Consensus 88 ------------------------~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~--l~v~~a~ 125 (220)
---||+|+|.+.+.|.++...++|.+|.... |-+.|..
T Consensus 243 s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 243 SESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred cccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1237999999999999999999999987544 4444443
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.65 E-value=1 Score=39.13 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE-EEEecccCCCCCcceEEEEEeCCH-------HH
Q 027685 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDP-------AD 101 (220)
Q Consensus 30 ~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~-------~~ 101 (220)
.|.++.+.+-|+|+||+.+ +...||+..+.+.+.+- .|.+. .+.+-||+.|.+. .+
T Consensus 323 ~g~~a~~~~di~~~nl~rd----------~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~~~~~~~ 386 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRD----------IRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGVPSTQDD 386 (396)
T ss_pred CcccCccccceeeccCccc----------cchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCCCCCchH
Confidence 3445666778999999999 99999999998876532 33333 3467899999654 44
Q ss_pred HHHHHHhhC
Q 027685 102 AADAKYHMD 110 (220)
Q Consensus 102 a~~Al~~l~ 110 (220)
+.++++.||
T Consensus 387 ~~~~~~s~~ 395 (396)
T KOG4410|consen 387 MDKVLKSLN 395 (396)
T ss_pred HHHHhccCC
Confidence 555555543
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=88.81 E-value=0.88 Score=30.91 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 027685 62 EDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 126 (220)
Q Consensus 62 ~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 126 (220)
++|.+.|...| .|.+|.-+....++.+...-||+.+...+. .+.|+-..|++..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCC
Confidence 45677777766 677777777766777778889988765553 334566778899998886543
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=88.48 E-value=0.57 Score=31.93 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=44.1
Q ss_pred HHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 62 EDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 62 ~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
++|++.|+.+| ++.+|.-+....++.+..+-||+.....+... .|+-+.|+|+.|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35777888877 67788777777777777888888876544333 456677899998887543
No 153
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.14 E-value=16 Score=30.49 Aligned_cols=56 Identities=20% Similarity=0.058 Sum_probs=36.7
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH--hhCCceec
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY--HMDGYLLL 115 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~--~l~g~~i~ 115 (220)
+---|.+-+...|+|-=..=....+...+...-|-.=.+.++|++||+ .|+|.+|.
T Consensus 29 ~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 29 DLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred HHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 455667778888877532222222233445566777788999999996 58998874
No 154
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.96 E-value=15 Score=35.52 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCCHHHHHHHhcCCCce-----EEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 027685 58 ICRPEDLRGPFGQFGRL-----KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i-----~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 127 (220)
+++..+|..++..-+.| -.|.|. ..|.||+... ..|...+..|++..+.|+.|.|+.+...
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 38888888888766544 356665 4589999864 5688899999999999999999988643
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=83.07 E-value=0.18 Score=47.20 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..|+|||.|++++ ++-++|..+|..+--+..+.+-.+..-.+..-+++|+|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pn----------is~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPN----------ISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCc----------ccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3688999999999 999999999998865555555443333455678899998777777888888887765
Q ss_pred CeEE
Q 027685 116 GREL 119 (220)
Q Consensus 116 g~~l 119 (220)
...+
T Consensus 300 s~~~ 303 (648)
T KOG2295|consen 300 SNFL 303 (648)
T ss_pred cccc
Confidence 5443
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=81.07 E-value=2.9 Score=31.48 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=30.4
Q ss_pred CCeEEEccCCCCCccccccC---CCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC-CHHHHHHHH
Q 027685 37 PTSLLVRNLRHDSFSTKTYK---SICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAK 106 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~---~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al 106 (220)
|-++.|.|++... ... .+++.+.|.+.|..|..+. |..+.+.. ...++++|+|. +..-...|+
T Consensus 8 PwmgIi~N~~~~~----~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 8 PWMGIIVNIPTEK----DDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp S-EEEEE----EE-----TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred CCEEEEEcCcccc----CCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 3466777876650 001 2356688999999998775 44444422 45789999997 444445555
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.98 E-value=2.9 Score=37.97 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=47.0
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCce-EEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
..+.+..|-|.++|.. ...+||...|..|+.- -.|+++-+ .+||..|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~e----------fkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDE----------FKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchh----------hccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 3456788999999999 7888899999998643 45666644 4899999999999999844
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=78.53 E-value=2.8 Score=34.01 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=44.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
......+++.+++.. ++..++..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 222 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLK----------TAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccc----------cchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 345778999999999 999999999999999987777665433334444444444444444443
No 159
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=77.72 E-value=0.53 Score=39.35 Aligned_cols=59 Identities=29% Similarity=0.407 Sum_probs=48.0
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
++++.+.++|.+-|.|..+.+..+.. |.+..++|+++.-.+..-.|+...+++.+.-.+
T Consensus 96 ~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 96 VTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred cchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 78888889999999999888887753 778899999999988888888887776544333
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=76.41 E-value=4 Score=36.76 Aligned_cols=71 Identities=17% Similarity=0.377 Sum_probs=50.5
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc-eEEEEecccCCC--CCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR-LKDIYLPRDYYT--GEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~-i~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
.+.+.|.|.+||+. +++++|.+.+..|-. |....+...... ..--+.|||.|...+++......++|
T Consensus 5 ~~~~Kvv~rrlpp~----------l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPK----------LTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred ccceeeeeecCCCc----------ccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 45788999999999 999988888777632 333333321111 12245689999999999988889999
Q ss_pred ceec
Q 027685 112 YLLL 115 (220)
Q Consensus 112 ~~i~ 115 (220)
++|.
T Consensus 75 ~ifl 78 (376)
T KOG1295|consen 75 YIFL 78 (376)
T ss_pred eEEe
Confidence 8753
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.68 E-value=0.67 Score=42.39 Aligned_cols=77 Identities=3% Similarity=-0.194 Sum_probs=57.1
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
..|+..||.. +++.+|.-+|+.||-|..+.+......+.....+||+..+ .+++.+|+.|.-..+.|..
T Consensus 5 ~~~l~d~~~~----------~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~ 73 (572)
T KOG4365|consen 5 KKSLKDSVAS----------NNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQ 73 (572)
T ss_pred hhhHhhcccc----------cccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhh
Confidence 4455666666 9999999999999999988877665566666677877654 4566677666666677888
Q ss_pred EEEEEecc
Q 027685 119 LTVVFAEE 126 (220)
Q Consensus 119 l~v~~a~~ 126 (220)
+.|.++..
T Consensus 74 ~r~~~~~~ 81 (572)
T KOG4365|consen 74 DRKAVSPS 81 (572)
T ss_pred hhhhcCch
Confidence 88877764
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.09 E-value=7.8 Score=33.81 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=57.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccC-------CCCCcceEEEEEeCCHHHHHHHH---
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDY-------YTGEPRGFGFVQYIDPADAADAK--- 106 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~-------~~g~~~g~afV~f~~~~~a~~Al--- 106 (220)
...|.+.||..+ ++--.+...|-+||.|+.|.++.+. ...+......+-|-+.+.|....
T Consensus 15 TRSLLfeNv~~s----------idLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnv 84 (309)
T PF10567_consen 15 TRSLLFENVNNS----------IDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNV 84 (309)
T ss_pred eHHHHHhhcccc----------ccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHH
Confidence 456889999988 8888888899999999999998764 12233466789999988876543
Q ss_pred -HhhCC--ceecCeEEEEEEec
Q 027685 107 -YHMDG--YLLLGRELTVVFAE 125 (220)
Q Consensus 107 -~~l~g--~~i~g~~l~v~~a~ 125 (220)
+.|.. ..|....|+|.|..
T Consensus 85 LQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 85 LQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHHHhcCCcceeEEEEE
Confidence 22322 23667778877765
No 163
>PRK11901 hypothetical protein; Reviewed
Probab=69.57 E-value=8.8 Score=33.97 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=35.6
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEE--EeCCHHHHHHHHHhhCCce
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFV--QYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV--~f~~~~~a~~Al~~l~g~~ 113 (220)
..++.|..|..+++ +..++|..-..+|+ ..|.+| .|.+.++|..||..|-...
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 57788888888775 44455544333333 455543 7899999999999886543
No 164
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=68.93 E-value=20 Score=22.91 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=40.2
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCH----HHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDP----ADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~----~~a~~Al~~ 108 (220)
||.|.||... -....|.+.+...-.|..+.+-.. .+-+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~----------~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCE----------GCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSH----------HHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccH----------HHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888 788899999999877888877643 45678888633 556666654
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=68.06 E-value=21 Score=32.69 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC----CceEEEEec
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF----GRLKDIYLP 80 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~----G~i~~v~i~ 80 (220)
++...|-|-||.|+. +...+|..+|..| |+|..|.|.
T Consensus 144 ~~tkrLAvVnmDWd~---------v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 144 NPTKRLAVVNMDWDR---------VDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CcccceeEeeccccc---------chHHHHHHHHHhhCCCCCccceeEec
Confidence 456789999999986 8888998888765 567767654
No 166
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=61.60 E-value=8.7 Score=32.52 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEE
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDI 77 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v 77 (220)
....++|+-|||.. +|++.|..+..+.|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~----------~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLL----------STEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeeccccc----------ccHHHHHHHHHHhhhhhhe
Confidence 33678999999999 9999999999998865543
No 167
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=60.73 E-value=24 Score=23.78 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=41.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 108 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 108 (220)
..+++|.++... --...+...+.....|..+.+-.+ .+-++|+|.+ .++...||+.
T Consensus 3 ~~~l~v~~MtC~----------~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 3 KTTLKVEGMTCG----------HCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred eEEEEECCcCcH----------HHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcCCcCCHHHHHHHHHH
Confidence 357888899888 788889999999887888877654 4568999987 3444444433
No 168
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=56.81 E-value=52 Score=21.40 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
.+++.+.+...-.|..|..+ +|...-.+.|.+.+.++.+..+..
T Consensus 12 ~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 12 YDEFAEALAEIPEVVECYSV----TGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEE----SSSSSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEE----eCCCCEEEEEEECCHHHHHHHHHH
Confidence 67788889999999999887 566677889999999999998554
No 169
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=55.72 E-value=19 Score=25.44 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=21.6
Q ss_pred HHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhhCCceecCeEEEEE
Q 027685 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHMDGYLLLGRELTVV 122 (220)
Q Consensus 63 ~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l~g~~i~g~~l~v~ 122 (220)
+++-.+..-..|-.|.|... ...|||.|. ..++...+++.|....+.-+.|+|+
T Consensus 15 ~~QYeLsk~~~vyRvFiNgY------ar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 15 VKQYELSKNEAVYRVFINGY------ARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp HHHHTTTTTTTB------TT------SS--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred HHHHHhhcccceeeeeeccc------ccceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 44555666666666665422 236899997 4477888888888888888887764
No 170
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.00 E-value=18 Score=31.42 Aligned_cols=34 Identities=21% Similarity=0.043 Sum_probs=24.9
Q ss_pred EEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccC
Q 027685 92 GFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 92 afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~ 127 (220)
|||+|.+..+|+.|++.+..... ..+.|+.|.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 79999999999999987655443 44466666543
No 171
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.67 E-value=28 Score=23.23 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCceEEEEec
Q 027685 61 PEDLRGPFGQFGRLKDIYLP 80 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~ 80 (220)
.++|+++|+..|+|.-+.+.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36799999999999876654
No 172
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=46.17 E-value=12 Score=34.18 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHhcC--CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH
Q 027685 61 PEDLRGPFGQ--FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 61 e~~L~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 107 (220)
.++|..+|.. .+.+..|.+..+....++.|..|++|....+|++++.
T Consensus 196 ~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 196 QEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4589999988 6777888888777677889999999999999998874
No 173
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=46.06 E-value=15 Score=35.46 Aligned_cols=15 Identities=13% Similarity=-0.223 Sum_probs=7.4
Q ss_pred EEEccCCCCCcccccc
Q 027685 40 LLVRNLRHDSFSTKTY 55 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~ 55 (220)
+.+.++|.. |+|.++
T Consensus 547 ~k~t~~p~S-~st~A~ 561 (878)
T KOG1847|consen 547 AKSTGQPLS-GSTAAS 561 (878)
T ss_pred ccccccccc-cccccc
Confidence 344455554 555555
No 174
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=45.56 E-value=6.9 Score=34.90 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 58 ICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.++...|.+++++.|.|..-.|..- -+-|.+||.+-..++++++++.|.+.
T Consensus 272 ~~~~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 272 SWPPPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCCcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3445778888899998876555532 23577899999999999999998865
No 175
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=45.08 E-value=69 Score=21.44 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.+|.+.+.++| +..+.|..- ..-++.|+.+.+.++++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs----G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS----GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT----SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC----CCCCeEEEEECCHHHHHHHHHHHH
Confidence 46777778888 444555421 124577788888888888887763
No 176
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=44.77 E-value=1e+02 Score=21.83 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHhcCC-CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 61 PEDLRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 61 e~~L~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
.+.+.++++++ |+|..+.+... ..-....+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 45577777776 47888877743 44567889999999888776444
No 177
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.99 E-value=77 Score=22.38 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=31.6
Q ss_pred CCHHHHHHHhcC-CC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 59 CRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 59 ~te~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
++..+|++.++. || +|..|..+.-+ ....-|||.+...++|......|
T Consensus 32 anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 32 ATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 888888888876 55 45555443322 22346999999888887775543
No 178
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=40.99 E-value=57 Score=26.64 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=33.5
Q ss_pred CCHHHHHHHhcC-CCceEEEEecccCCCC--CcceEEEEEeCCHHHHHHHHHh
Q 027685 59 CRPEDLRGPFGQ-FGRLKDIYLPRDYYTG--EPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 59 ~te~~L~~~f~~-~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~Al~~ 108 (220)
+|+++|.++.+- -|++.+|.+-... .+ ..+|-.||+|.+.++|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555554432 2688888776532 23 4678899999999999987755
No 179
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=40.23 E-value=16 Score=35.29 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=50.7
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
+||+.+--.. -+...+..++..++++....++.....+...+-++++|.....++.|. .|.+..+....
T Consensus 513 ~i~~~~~~~~----------s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~ 581 (681)
T KOG3702|consen 513 TIFVANGHGG----------SNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKC 581 (681)
T ss_pred ceeccccccc----------CCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccc
Confidence 6777776666 677778888888888887776665445555567899999888776664 66666665554
Q ss_pred EE
Q 027685 119 LT 120 (220)
Q Consensus 119 l~ 120 (220)
|+
T Consensus 582 ~k 583 (681)
T KOG3702|consen 582 LK 583 (681)
T ss_pred ee
Confidence 44
No 180
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=39.50 E-value=96 Score=24.17 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=26.9
Q ss_pred eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 74 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 74 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
|..|.++. ..+||.||+....+++..+|..+.+..
T Consensus 36 i~~i~vp~-----~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPP-----ELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccC-----CCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 55666554 369999999998889999988777653
No 181
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=39.45 E-value=26 Score=34.02 Aligned_cols=9 Identities=44% Similarity=0.637 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 027685 164 YSRSPDYYS 172 (220)
Q Consensus 164 Rsrs~~r~~ 172 (220)
+++++-.|.
T Consensus 735 rSrs~~~~~ 743 (878)
T KOG1847|consen 735 RSRSHELYD 743 (878)
T ss_pred ccccccccc
Confidence 344443333
No 182
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=39.14 E-value=39 Score=28.82 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=36.3
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEe-CCHHHHHHHHHhhCCcee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQY-IDPADAADAKYHMDGYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f-~~~~~a~~Al~~l~g~~i 114 (220)
..-|||++|-...++ . .-.+.|...+-+.+ .|..+.+-. ...|||.... .+.++..++|+++.+..+
T Consensus 37 ~~vvfiGGLgdgLl~-~-----~y~~~L~~~lde~~wslVq~q~~S-----sy~G~Gt~slk~D~edl~~l~~Hi~~~~f 105 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLI-C-----LYTTMLNRYLDENSWSLVQPQLRS-----SYNGYGTFSLKDDVEDLKCLLEHIQLCGF 105 (299)
T ss_pred EEEEEEcccCCCccc-c-----ccHHHHHHHHhhccceeeeeeccc-----cccccccccccccHHHHHHHHHHhhccCc
Confidence 346899988766210 0 11223333333322 233333322 2345553333 477788888887666554
Q ss_pred cCeEEEEE
Q 027685 115 LGRELTVV 122 (220)
Q Consensus 115 ~g~~l~v~ 122 (220)
.-..+-|-
T Consensus 106 St~vVL~G 113 (299)
T KOG4840|consen 106 STDVVLVG 113 (299)
T ss_pred ccceEEEe
Confidence 43333343
No 183
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.07 E-value=96 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=22.3
Q ss_pred CcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 87 EPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 87 ~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
..+||-|||=.+..++..|+..+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 458999999999999999998776654
No 184
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=40 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.4
Q ss_pred CcceEEEEEeCCHHHHHHHHHhh
Q 027685 87 EPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 87 ~~~g~afV~f~~~~~a~~Al~~l 109 (220)
..--|.+++|.+.+...+|...+
T Consensus 64 E~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 64 EEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred cEEEEEEEEcCchhHHHHHHHHh
Confidence 33458999999998888777553
No 185
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.69 E-value=1.1e+02 Score=21.16 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=35.9
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcC-CC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
-|+..++.. ++..+|+..++. || +|..|....-+ ....-|||++..-+.|..+-..
T Consensus 16 ~y~F~V~~~----------anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRK----------ATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCC----------CCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 455566777 898899888876 44 45555433221 1234599999887777766544
No 186
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=38.16 E-value=65 Score=23.24 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCceEEEEecccCC-CCCcceEEEEEeCC--HHHHHHHHHhhCCcee-cCeEEEEEEec
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYID--PADAADAKYHMDGYLL-LGRELTVVFAE 125 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~--~~~a~~Al~~l~g~~i-~g~~l~v~~a~ 125 (220)
.+.|.++|.+.+.|..+.+..-.. .+.+.-+-.|+|.. .+.+..+|..+....+ ++..|.+-...
T Consensus 21 ~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~ 89 (108)
T PF14581_consen 21 LAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVDFVLLD 89 (108)
T ss_pred HHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEEEEEcc
Confidence 467899999999988766554333 33444444567766 3333333333333333 33666555444
No 187
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=37.65 E-value=1.1e+02 Score=23.24 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=42.2
Q ss_pred CCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 59 CRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 59 ~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
.+...|.+.+.+-| .++.+..- .+-..|.|.+.++-.+|.+.|....-++..|.++.+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 35567777777766 33444433 2367899999999999999888777667777777665
No 188
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=37.62 E-value=78 Score=23.37 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
+.+|..++++.| |.+..|..+.. .+.-||++++.+.+...++|
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHH
Confidence 356778888887 55555555532 24679999999655544444
No 189
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=36.81 E-value=1.5e+02 Score=21.85 Aligned_cols=11 Identities=9% Similarity=0.150 Sum_probs=9.1
Q ss_pred CeEEEccCCCC
Q 027685 38 TSLLVRNLRHD 48 (220)
Q Consensus 38 ~~l~V~~Lp~~ 48 (220)
..|||+++|..
T Consensus 6 ~~l~~G~~~~~ 16 (138)
T smart00195 6 PHLYLGSYSSA 16 (138)
T ss_pred CCeEECChhHc
Confidence 35999999887
No 190
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=36.16 E-value=24 Score=31.47 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.2
Q ss_pred HHHHhc
Q 027685 64 LRGPFG 69 (220)
Q Consensus 64 L~~~f~ 69 (220)
|+.-|+
T Consensus 174 Lw~WyE 179 (453)
T KOG2888|consen 174 LWDWYE 179 (453)
T ss_pred HHHHhh
Confidence 333333
No 191
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=36.01 E-value=11 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
++|++.|..+.....+ + +-.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~--v--------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--V--------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhh--h--------hhhhccCCCCHHHHHHHHHHh
Confidence 6788888776544332 1 225899999999998887664
No 192
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=34.82 E-value=88 Score=23.72 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhcC-CC---ceEEE-EecccCCCCCcceEEEEEeCCHHHHH
Q 027685 58 ICRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAA 103 (220)
Q Consensus 58 ~~te~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~ 103 (220)
++..++|.+-+.+ |- ++..| .+-....+|...|||+| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 4677777776655 22 22222 33334456778889977 66666554
No 193
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=34.66 E-value=1.4e+02 Score=19.95 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=35.2
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcC-CCce-EEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
++.-.|+.. ++-++|...+.+ |+.. ..+.|......| -+|...+.++.+.|+..+.
T Consensus 12 ~~~~~~~~~----------~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRD----------ISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCC----------CCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 444556777 888887777654 4431 233333322222 2889999999999997754
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=34.38 E-value=24 Score=25.23 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.3
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPF 68 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f 68 (220)
..+|.|.|||.. +.+++|++.+
T Consensus 52 ~rtVlvsgip~~----------l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDV----------LDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCC----------CChhhheeeE
Confidence 568999999998 9999998764
No 195
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.56 E-value=53 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.0
Q ss_pred EEEEEeCCHHHHHHHHHhhCCcee
Q 027685 91 FGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 91 ~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+.+|.|.+..+|.+|-+.|....|
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999888776544
No 196
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=33.39 E-value=1.2e+02 Score=25.75 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEE-EecccC---CCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDI-YLPRDY---YTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v-~i~~~~---~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
..+-+|.|.-||.. -.++-+..+|+..|--+.+ .+..|. ..|.+ .|..|+.....-...||..|
T Consensus 116 ~~pL~v~~p~lp~r----------Gg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S-~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 116 PIPLEVRLPALPCR----------GGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDS-RYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred CCceEEEeeeeecC----------CcHHHHHHhhcCcCceEEeEeccCCccCccccCC-cceEEEEeeeEEHHHHHhhh
Confidence 55778999999999 8999999999999943333 344443 22333 36667776666666666554
No 197
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.05 E-value=78 Score=22.47 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 97 (220)
+...-|||++++.. +.|. |++...++-.--.+.|+... .+..||+|-++-
T Consensus 23 Ei~~GVyVg~~s~r----------VRe~-lW~~v~~~~~~G~a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSAR----------VRER-LWERVTEWIGDGSAVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHH----------HHHH-HHHHHHhhCCCccEEEEEcc--CCCCCEEEEEeC
Confidence 34567999999887 5554 55554443222233333322 236889998774
No 198
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=32.98 E-value=1.5e+02 Score=19.73 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=35.0
Q ss_pred CCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 59 CRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 59 ~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
-.-.+|...+...| .|..+.+......+.....--|+..+.++....|..|...
T Consensus 18 GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 18 GLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp THHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred CHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 34567888887765 5777776653223333444456678999999988887654
No 199
>PF15063 TC1: Thyroid cancer protein 1
Probab=32.18 E-value=12 Score=25.94 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=32.4
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE---EEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK---DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~---~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
--+.||-.+ ++.+.|..+|+.-|+.. .+.|+.. ...+.++...||..|
T Consensus 28 kasaNIFe~----------vn~~qlqrLF~~sGD~kAEeRA~iI~~------------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 28 KASANIFEN----------VNLDQLQRLFQKSGDKKAEERARIIWE------------CAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhc----------cCHHHHHHHHHHccchhHHHHHHHHHh------------hCCCHHHHHHHHHhc
Confidence 346778788 99999999999999754 2333321 234667666676554
No 200
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.71 E-value=24 Score=26.87 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=36.7
Q ss_pred CCHHHHHHHhcC----CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 59 CRPEDLRGPFGQ----FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 59 ~te~~L~~~f~~----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
++...|...+.. .|.+.-..+- .++.+++|.+.+++..++.. ....+++..|.++.-.
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l~--------~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDLG--------DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeC--------CCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 455555555543 4444433332 56889999999999988853 4456777766665443
No 201
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=31.66 E-value=11 Score=24.40 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=17.9
Q ss_pred cceEEEEEeCC-HHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 88 PRGFGFVQYID-PADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 88 ~~g~afV~f~~-~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
.+|||||...+ .++.--.-..|++ -++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 47899999886 2211112223332 2356667776655
No 202
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.29 E-value=2e+02 Score=20.33 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=32.7
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhc----CCCc-eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFG----QFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~----~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
-|+|..++.. ++-++|.+.+. -.-. .-.++++- ..|. .|+|.+.++.+.|+..+.
T Consensus 10 di~it~~d~~----------~s~e~L~~~v~~~c~~~~~q~ft~kw~D--EEGD-----p~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 10 DIMITSIDPS----------ISLEELCNEVRDMCRFHNDQPFTLKWID--EEGD-----PCTISSQMELEEAFRLYE 69 (83)
T ss_pred cEEEEEcCCC----------cCHHHHHHHHHHHhCCCCCCcEEEEEEC--CCCC-----ceeecCHHHHHHHHHHHH
Confidence 4777788887 77665554443 2211 12233332 2333 478899999999987643
No 203
>PRK10905 cell division protein DamX; Validated
Probab=29.84 E-value=96 Score=27.55 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=32.8
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCCCCCcceEE--EEEeCCHHHHHHHHHhhCCc
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~a~~Al~~l~g~ 112 (220)
.+++.|.+|..++|- ....+.....+|+ ..|. +-.|.+.++|+.||..|-..
T Consensus 256 Ss~~~l~~fakKlgL-~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 256 SNYDNLNGWAKKENL-KNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCHHHHHHHHHHcCC-CceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 567788888887753 3333333222333 2443 34789999999999988643
No 204
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=29.32 E-value=1.4e+02 Score=21.95 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCceEEEEeccc-----C----------CCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 62 EDLRGPFGQFGRLKDIYLPRD-----Y----------YTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~-----~----------~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
+...++|..||.+..+.-..+ . ..+..--|.+|+|.+.+...++...+
T Consensus 23 ~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 23 EKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 456778999997765543221 1 22344457999999999888887654
No 205
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=28.45 E-value=3.3e+02 Score=22.25 Aligned_cols=7 Identities=43% Similarity=0.249 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 027685 178 GRDSRSI 184 (220)
Q Consensus 178 r~~srs~ 184 (220)
++++++.
T Consensus 140 rs~SRs~ 146 (195)
T KOG0107|consen 140 RSRSRSR 146 (195)
T ss_pred ccccccC
Confidence 3344444
No 206
>PF14893 PNMA: PNMA
Probab=27.82 E-value=53 Score=29.29 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC----CCceEEEEecccCCCCCcceEEEEEeCC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ----FGRLKDIYLPRDYYTGEPRGFGFVQYID 98 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~----~G~i~~v~i~~~~~~g~~~g~afV~f~~ 98 (220)
++-..|.|.+||.+ +++++|++.+.. .|...-+.-+... ......|+|+|..
T Consensus 16 ~~~r~lLv~giP~d----------c~~~ei~e~l~~~l~plg~yrvl~~~f~~--~~~~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPED----------CEEAEIEEALQAALSPLGRYRVLGKMFRR--EENAKAALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCC----------CCHHHHHHHHHHhhcccccceehhhHhhh--hcccceeeeeccc
Confidence 55678999999999 999998887654 4432211111011 1224568888874
No 207
>PHA01632 hypothetical protein
Probab=27.70 E-value=59 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=16.3
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcC
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ 70 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~ 70 (220)
|.|..+|.. .||++|+.++.+
T Consensus 19 ilieqvp~k----------pteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQK----------PTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCC----------CCHHHHHHHHHH
Confidence 345688888 999999887654
No 208
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=27.66 E-value=1.3e+02 Score=26.10 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=34.1
Q ss_pred CCCCHHHHHHH-----hcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEe
Q 027685 57 SICRPEDLRGP-----FGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFA 124 (220)
Q Consensus 57 ~~~te~~L~~~-----f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a 124 (220)
.-+..++++.+ |..||.|..|+.-.....+..+-.-|++.. +.+...+++....+.+-...|..+|+
T Consensus 37 ArI~~EH~r~~~p~~~f~~~GdV~alkaEe~~d~~~gkl~L~A~i~-P~~~Lv~~nk~gQKlftSiEi~pnFa 108 (276)
T PF05929_consen 37 ARIWPEHIRSYWPDSPFGNYGDVLALKAEEIDDGGKGKLALFAQID-PNDELVELNKAGQKLFTSIEIDPNFA 108 (276)
T ss_pred eeecHHHhcccCCccccccccceEEEEEEEcccCCCCeEEEEEEeC-CCHHHHHHHHcCCEEEEEEEeccccc
Confidence 34555666654 788999988876554332222222344443 33444444453334444444444444
No 209
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.44 E-value=93 Score=26.47 Aligned_cols=63 Identities=16% Similarity=-0.017 Sum_probs=38.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC---CHHHHHHHHHhhC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHMD 110 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~l~ 110 (220)
..+|.|.|++.. .+.-..+.++|..++..++....+.++.| .+.+|+.-. +.+....+++.|.
T Consensus 137 ~v~l~lEN~~~~-----~~~l~~~~~el~~ll~~~~~~~~lg~~lD------t~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQ-----GSELGRSFEELAYIIKVIVDKRRIGVCLD------TCHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCC-----CCccCCCHHHHHHHHHhcCCCCceEEEEE------hhhHHhcCCCcCCHHHHHHHHHHHH
Confidence 478999999754 11122588999999988875456777766 233443322 3455555655543
No 210
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=27.39 E-value=1e+02 Score=23.48 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=31.0
Q ss_pred eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 74 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 74 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
+.++.++... ....+-++.+.+.. ...+|..|.+..+.|++|.|..-.
T Consensus 14 ~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 14 AKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 3445555432 22345666666554 556788888999999999987643
No 211
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=27.21 E-value=83 Score=29.40 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=28.3
Q ss_pred ccCCCCCHHHHHHHhcCC--CceEEEEecc-cCCCCCcceEEEEEeCCH
Q 027685 54 TYKSICRPEDLRGPFGQF--GRLKDIYLPR-DYYTGEPRGFGFVQYIDP 99 (220)
Q Consensus 54 ~~~~~~te~~L~~~f~~~--G~i~~v~i~~-~~~~g~~~g~afV~f~~~ 99 (220)
..+.......|.++|..| |.|.++.+-. |..+ ....|.||.+.-.
T Consensus 41 ~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~D~~s-~l~KfvLI~W~GE 88 (484)
T KOG3655|consen 41 LKVAGSGEGGLEEFLGDFDSGKVMYGFCRVKDPMS-GLPKFVLINWIGE 88 (484)
T ss_pred eeeeccccccHHHHhhhcccCceeEEEEEecCccc-CCcceEEEEecCC
Confidence 344456667788888776 5666665533 3333 4466999998643
No 212
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=26.97 E-value=1.2e+02 Score=28.21 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=39.8
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC----ceEEEEecccCCCC--------CcceEEEEEeCCHHHHHHH
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG----RLKDIYLPRDYYTG--------EPRGFGFVQYIDPADAADA 105 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G----~i~~v~i~~~~~~g--------~~~g~afV~f~~~~~a~~A 105 (220)
..|.+.+=-+- ++.+.|++++.... .+.-+.+..+.-+| ...-.++||..+..++++.
T Consensus 98 ~vLVl~GD~PL----------it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~ 167 (460)
T COG1207 98 DVLVLYGDVPL----------ITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQ 167 (460)
T ss_pred cEEEEeCCccc----------CCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhc
Confidence 35555555555 79999998876652 33333333322222 1233588999999999988
Q ss_pred HHhhCCc
Q 027685 106 KYHMDGY 112 (220)
Q Consensus 106 l~~l~g~ 112 (220)
|+.+|.-
T Consensus 168 I~eiNtG 174 (460)
T COG1207 168 IKEINTG 174 (460)
T ss_pred CcEEeee
Confidence 8777653
No 213
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=26.56 E-value=1.4e+02 Score=24.05 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=35.6
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCC-CCcceEEEEEeCCHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
-=||+|.+.. .+-..|-+.|...|- .|.++..+.. ..+.++-+|.|.+.++...++..+
T Consensus 20 VR~ItN~SSG----------~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSG----------KMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--S----------HHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcC----------HHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 3466777666 677778888877764 3333333222 225688899999999998888754
No 214
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.18 E-value=1.2e+02 Score=20.70 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=27.0
Q ss_pred HhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 67 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 67 ~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..||.|..+-=. -.|+ |.|.+.++++..++.|....
T Consensus 16 ~L~kfG~i~Y~Skk--------~kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK--------MKYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEECC--------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 46789998776422 2354 45789999999998887654
No 215
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.96 E-value=56 Score=19.34 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=9.8
Q ss_pred CCCHHHHHHHhcCCCc
Q 027685 58 ICRPEDLRGPFGQFGR 73 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~ 73 (220)
-+++++|+++|.+.+.
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 3889999999987653
No 216
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.81 E-value=2.1e+02 Score=19.05 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=28.6
Q ss_pred CHHHHHHHhcCCC-ceEEEEecccCCCCCcce-EEEEEeC-CHHHHHHHHHhhCC
Q 027685 60 RPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRG-FGFVQYI-DPADAADAKYHMDG 111 (220)
Q Consensus 60 te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g-~afV~f~-~~~~a~~Al~~l~g 111 (220)
.-.++.+.|+.+| .+..|.- -+..+..-. +-||+++ ..+..++||+.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeS--RP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIES--RPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEEC--CCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3567788888886 3444432 222223223 3467776 55566778877754
No 217
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=25.60 E-value=1.8e+02 Score=20.81 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred eEEEccCCCCCccccccCCCCCHH---HHHHHhcCCCceEEEEe--cccCCCCCcceEEEEEeC
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPE---DLRGPFGQFGRLKDIYL--PRDYYTGEPRGFGFVQYI 97 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~---~L~~~f~~~G~i~~v~i--~~~~~~g~~~g~afV~f~ 97 (220)
..|+.+||.. +-+. .++..|..+..-..|.+ ......+..+|++++.+.
T Consensus 12 ~a~~a~lp~~----------va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSS----------VAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CH----------HHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHH----------HHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4688899888 7664 45666777764444443 222344566777765553
No 218
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=25.52 E-value=2.3e+02 Score=20.58 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCHHHHHHHhcC-CCceEEEEe----cccCCCCCcceEEEEEeCCHHHHHH
Q 027685 59 CRPEDLRGPFGQ-FGRLKDIYL----PRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 59 ~te~~L~~~f~~-~G~i~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
++-.+|++-+.+ |+.=.++.+ ......+...|||.| |.+.+.|.+
T Consensus 31 psr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 31 PSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 566777666654 542222222 223333556667665 666665543
No 219
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=25.41 E-value=1.7e+02 Score=20.50 Aligned_cols=44 Identities=11% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCHHHHHHHhcC-CC---c-eEEEEecccCCCCCcceEEEEEeCCHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG---R-LKDIYLPRDYYTGEPRGFGFVQYIDPADAA 103 (220)
Q Consensus 59 ~te~~L~~~f~~-~G---~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 103 (220)
.+..+|++.+.+ |+ + |.-..|......+...|||+| |.+.+.++
T Consensus 13 psr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~k 61 (84)
T PF01282_consen 13 PSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALK 61 (84)
T ss_dssp --HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHH
Confidence 556677766654 33 1 222233334334555677766 66666654
No 220
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.38 E-value=2.1e+02 Score=20.57 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCCHHHHHHHhcCCCceE-EEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 58 ICRPEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.++...|...|.--|.-. -..+-.|.. +.+|.|+|.+.+.+..|...|.
T Consensus 23 ~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 23 NLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHHHH
Confidence 467777777676555321 223333422 5689999999999998887664
No 221
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=25.34 E-value=2e+02 Score=22.14 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCHHHHHHHhcC-CC--ceEEEE---ecccCCCCCcceEEEEEeCCHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG--RLKDIY---LPRDYYTGEPRGFGFVQYIDPADAA 103 (220)
Q Consensus 59 ~te~~L~~~f~~-~G--~i~~v~---i~~~~~~g~~~g~afV~f~~~~~a~ 103 (220)
++-.+|.+.+.+ |+ +...|. |......|...|||.| |.+.+.|.
T Consensus 36 pSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 36 VSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 667777777764 54 112222 2223334556677765 66655544
No 222
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.07 E-value=1.9e+02 Score=18.45 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 61 PEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 61 e~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
-.+|.++|.+.| .|..+.+... +. +++..+.+.+.+.|.++|.. +|..
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~---~~-~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADT---SE-FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEec---CC-CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 456777777765 5666655332 12 35555667777777777755 4443
No 223
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=24.83 E-value=1.6e+02 Score=20.49 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=23.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEE
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDI 77 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v 77 (220)
+..|+|.|||.. +.=-++.......|+.+++.-..|.++
T Consensus 34 p~~v~V~GLPeg--i~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 34 PEAVYVQGLPEG--IPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTTEEEES--TT----SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CCcEEEEeCCCC--CcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 567999999988 222233456677888888877776654
No 224
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.73 E-value=1.2e+02 Score=28.46 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=43.5
Q ss_pred EEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEE
Q 027685 41 LVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGREL 119 (220)
Q Consensus 41 ~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l 119 (220)
+||||+.-.. . .....|.++-++||.|-.+.|-. .-.|...+.+.|++|+.. ++..+.+++.
T Consensus 36 iIGnl~~l~~-----~--~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGS-----L--PPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCC-----C--chhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4788877510 0 13355666667899998777642 236777889999999966 7888888875
No 225
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.69 E-value=1.6e+02 Score=23.84 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=39.7
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEe-CCHHH---HHHHHHhhCCcee
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-IDPAD---AADAKYHMDGYLL 114 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f-~~~~~---a~~Al~~l~g~~i 114 (220)
.|.|.-=|.. ++-++|.++|-+.-+... +...- +-....|--+.| .+.++ |++.+..|....+
T Consensus 59 ~V~V~yDp~~----------isy~~LL~~ff~ihDPT~--~nrQG-nD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~ 125 (174)
T COG0225 59 AVEVTYDPKV----------ISYEELLEVFFEIHDPTS--LNRQG-NDRGTQYRSAIYYTNEEQKAIAEASIEELQASGY 125 (174)
T ss_pred EEEEEeCCcc----------ccHHHHHHHHheecCCCC--CCccC-CcccccceeEEEEcCHHHHHHHHHHHHHHHHhcc
Confidence 4666666666 888888888865422221 11110 001122332333 34444 4444555555456
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
.+.+|.+++.....
T Consensus 126 ~~~~IvteI~p~~~ 139 (174)
T COG0225 126 FKKPIVTEIEPAKN 139 (174)
T ss_pred CCCCeEEEeecccc
Confidence 67788877765443
No 226
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=24.66 E-value=1.2e+02 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=21.9
Q ss_pred CcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 87 EPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 87 ~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
..+||-||++....+...++..+.|..
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv~ 62 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHVR 62 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCEE
Confidence 479999999998888888887777643
No 227
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=24.45 E-value=3e+02 Score=25.83 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=33.9
Q ss_pred HHHHHHHhc----CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 61 PEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 61 e~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.-+|..+|. .+|-|+.+.|...+.. ......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHHH
Confidence 346667665 5778888777655432 224567889999999999887753
No 228
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.23 E-value=58 Score=27.22 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=10.7
Q ss_pred CcceEEEEEeCCHH
Q 027685 87 EPRGFGFVQYIDPA 100 (220)
Q Consensus 87 ~~~g~afV~f~~~~ 100 (220)
..+.|+||+|.+..
T Consensus 107 ~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 107 ASRPYAFIEFDTFI 120 (216)
T ss_pred cCCCeeEEehhHHH
Confidence 34679999998654
No 229
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.78 E-value=1.4e+02 Score=21.06 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC--CHHHHHHHHHhhCCc
Q 027685 63 DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI--DPADAADAKYHMDGY 112 (220)
Q Consensus 63 ~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~a~~Al~~l~g~ 112 (220)
.|+.|+...+...+|.......++...+.+||-|+ +.++.+..++.|+..
T Consensus 23 al~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 23 ALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp HCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46677777665554544433344555677776664 445556666666643
No 230
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=23.36 E-value=1.3e+02 Score=21.13 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=18.8
Q ss_pred cceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 88 PRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 88 ~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.+||.||++.-.+++..+|..+.|.
T Consensus 58 fpGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 58 FPGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCCEEEEEEEeCCcHHHHHhcCCCc
Confidence 4599999998666667777776664
No 231
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.94 E-value=55 Score=24.80 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=29.0
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecc
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPR 81 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~ 81 (220)
+.-|.|.|||... .+++.|..+...+|++..++...
T Consensus 104 ~vWVri~glP~~~---------~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 104 PVWVRIYGLPLHL---------WSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred chhhhhccCCHHH---------hhhHHHHHHHHhcCCeEEEEcCC
Confidence 3447788999984 67888999999999998887764
No 232
>PRK02886 hypothetical protein; Provisional
Probab=22.76 E-value=1.4e+02 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=26.9
Q ss_pred HhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 67 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 67 ~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..||.|..+-=. -.|+ |.|.+.++|+..++.|....
T Consensus 20 ~LrkyG~I~Y~Skr--------~kYv-vlYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 20 QLRKFGNVHYVSKR--------LKYA-VLYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HHhhcCcEEEEecc--------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 35689998766422 2354 55789999999998887654
No 233
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.67 E-value=1.4e+02 Score=28.17 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=36.0
Q ss_pred EEEccCCCCCccccccC----CCCCHHHHHHHhcCCCceEEE-EecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 40 LLVRNLRHDSFSTKTYK----SICRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~----~~~te~~L~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
++|..+....+|++++- ..+.+++|-.-|.-+-.-.++ .|..+ .+++=+.|.+++||++.++.+...
T Consensus 67 ~lVkD~~~rsyFlrl~di~~~rliWdqELY~nf~y~q~r~ffhtFegd------dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 67 CLVKDNAQRSYFLRLVDIVNNRLIWDQELYQNFEYRQPRTFFHTFEGD------DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred EEeeccccceeeeEEeeecCceeeehHHhhhhceeccCccceeeeccc------cceeeecccCHHHHHHHHHHHHHH
Confidence 34444444444444433 134445555555444322222 22222 346667889999999988776543
No 234
>PRK02302 hypothetical protein; Provisional
Probab=21.62 E-value=1.5e+02 Score=21.17 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=26.8
Q ss_pred HhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 67 PFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 67 ~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+.+||.|..+-=. -.|+ |-|.+.++|+..++.|....
T Consensus 22 ~LrkfG~I~Y~Skk--------~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKR--------SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEecc--------ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 35689998766322 2354 55789999999998887654
No 235
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.56 E-value=1.4e+02 Score=21.78 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC-CCceEEEEecccCCCCCcceEEEEEeCC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYID 98 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~ 98 (220)
+...-|||++++.. +.+ .|++.+.+ +++- .+.|+.. +....||+|-++.+
T Consensus 25 Ev~~GVyVg~~S~r----------VRd-~lW~~v~~~~~~G-~avmv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRR----------IRE-MIWQQVTQLAEEG-NVVMAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHH----------HHH-HHHHHHHHhCCCC-cEEEEEc--CCCCCCcEEEecCC
Confidence 34567899988887 554 44544443 3332 2333322 12335999988865
No 236
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=21.17 E-value=3.1e+02 Score=19.35 Aligned_cols=28 Identities=7% Similarity=-0.175 Sum_probs=20.8
Q ss_pred EEEeCCHHHHHHHHHhhCCceecCeEEEE
Q 027685 93 FVQYIDPADAADAKYHMDGYLLLGRELTV 121 (220)
Q Consensus 93 fV~f~~~~~a~~Al~~l~g~~i~g~~l~v 121 (220)
.|.|.+.++.+.+|+. |...|....|+.
T Consensus 44 ~vvfGd~~~i~~~Le~-~~~~I~~y~iE~ 71 (83)
T PF08503_consen 44 GVVFGDWDEIKPFLEA-NKDKIEDYRIEN 71 (83)
T ss_dssp EEEEEEHHHHHHHHHH-TTTTEEEEEEEE
T ss_pred EEEEecHHHHHHHHHh-chhhCcEEEEEe
Confidence 3789999999999976 556666666554
No 237
>COG5584 Predicted small secreted protein [Function unknown]
Probab=20.65 E-value=1.5e+02 Score=21.68 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=20.2
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCC
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYY 84 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~ 84 (220)
..-+-+++.|+++|.|..-+|...++
T Consensus 34 ~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 34 NALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred HHHHHHHHHhcccCCcceeEEEEecc
Confidence 44567889999999999888776553
No 238
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.52 E-value=2.8e+02 Score=25.06 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=33.6
Q ss_pred CCHHHHHHHhcCCC-ceE----EEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 59 CRPEDLRGPFGQFG-RLK----DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 59 ~te~~L~~~f~~~G-~i~----~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
+|..+++++|..-- .|. .+.|. | ++.-+..+-||+..+.+++..||+.|
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~l-D-q~~lP~~~~~~~~~~~~~v~~aI~~M 56 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLL-D-QSLLPFETVYVDLKTVEEVALAIRNM 56 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEE-e-cCCCCCeEEEEEeCCHHHHHHHHHhC
Confidence 57788899987531 111 12222 2 34566778999999999999999775
No 239
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=70 Score=30.33 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=32.3
Q ss_pred ceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 027685 89 RGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 126 (220)
Q Consensus 89 ~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 126 (220)
..+++++|++...+.+|+..++|....+..+.+..+..
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 57999999999999999999999988887776665543
No 240
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.39 E-value=2.2e+02 Score=17.29 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=20.7
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR 73 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~ 73 (220)
+.++|.+.... ...++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~----------~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPS----------EERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCC----------cCHHHHHHHHHHcCC
Confidence 46777777655 788999999999886
No 241
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=20.16 E-value=1.4e+02 Score=20.05 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCHHHHHHHhcC-CCc---eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 59 CRPEDLRGPFGQ-FGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 59 ~te~~L~~~f~~-~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
++.++|...... |+. ...+.+.-+ -| -+|...+.++.+.|+..++.
T Consensus 22 ~s~~~L~~~i~~~~~~~~~~~~l~Y~D~------dg-D~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 22 VSFDDLRSKIREKFGLLDEDFQLKYKDE------DG-DLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp SHHHHHHHHHHHHHTTSTSSEEEEEEET------TS-SEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCccEEEEeeCC------CC-CEEEeCCHHHHHHHHHHHHh
Confidence 777776666543 443 223333311 12 48999999999999987653
No 242
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=20.07 E-value=2.6e+02 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCCHH--HHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 58 ICRPE--DLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 58 ~~te~--~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
+++|+ -|++.|+++|.-. +..+ .|...|.-|+-+...++|+..++.|.
T Consensus 37 ~ised~~i~~~~~~~~~~g~-~~t~----~ga~ggv~~~p~~~~~~~~~~~~~l~ 86 (268)
T TIGR01743 37 SISEDIVIIKETFEKFGIGK-LLTV----PGAAGGVKYIPKMSQAEAEEFVEELC 86 (268)
T ss_pred hhhhhHHHHHHHHHhcCCce-EEEe----CCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence 44543 4788898875322 2222 45667888999999999988887663
Done!