Query 027685
Match_columns 220
No_of_seqs 272 out of 2469
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 1.5E-21 5.2E-26 176.9 18.2 86 35-130 100-185 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.3E-22 1.1E-26 145.9 11.2 81 36-126 18-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.9 3.9E-21 1.4E-25 142.9 12.1 84 35-128 4-87 (110)
4 2cq0_A Eukaryotic translation 99.9 8.3E-21 2.9E-25 138.5 12.2 87 33-129 11-97 (103)
5 1whw_A Hypothetical protein ri 99.8 8.7E-21 3E-25 137.3 12.1 87 33-129 4-90 (99)
6 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-20 4.3E-25 135.1 12.8 83 33-125 12-94 (94)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.2E-21 2.5E-25 138.5 11.2 87 34-130 9-95 (102)
8 2dgs_A DAZ-associated protein 99.8 1.5E-20 5.1E-25 136.2 12.6 87 33-130 6-92 (99)
9 2lxi_A RNA-binding protein 10; 99.8 1.3E-21 4.5E-26 140.4 6.9 85 37-131 1-87 (91)
10 1x5u_A Splicing factor 3B subu 99.8 1.3E-20 4.4E-25 137.8 12.0 87 33-129 11-97 (105)
11 1x4c_A Splicing factor, argini 99.8 2.3E-20 8E-25 137.6 13.3 77 34-127 12-93 (108)
12 2dnz_A Probable RNA-binding pr 99.8 1.6E-20 5.4E-25 134.8 11.8 85 35-129 3-87 (95)
13 2dnm_A SRP46 splicing factor; 99.8 1E-20 3.5E-25 138.0 10.9 86 34-129 10-95 (103)
14 3md1_A Nuclear and cytoplasmic 99.8 1.5E-20 5.3E-25 131.5 11.4 81 38-128 2-82 (83)
15 2lkz_A RNA-binding protein 5; 99.8 5.5E-21 1.9E-25 138.6 9.0 87 30-126 2-94 (95)
16 1x5s_A Cold-inducible RNA-bind 99.8 9.3E-21 3.2E-25 137.9 10.3 87 33-129 8-94 (102)
17 2dgo_A Cytotoxic granule-assoc 99.8 4.8E-20 1.7E-24 137.0 14.4 88 33-130 11-98 (115)
18 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-20 4.2E-25 133.1 10.6 83 35-127 4-86 (87)
19 2do4_A Squamous cell carcinoma 99.8 4.3E-20 1.5E-24 134.0 13.6 85 34-129 14-98 (100)
20 2cqc_A Arginine/serine-rich sp 99.8 1.9E-20 6.4E-25 134.3 11.5 83 34-126 12-94 (95)
21 2cpz_A CUG triplet repeat RNA- 99.8 3.2E-20 1.1E-24 138.1 13.1 86 34-129 22-107 (115)
22 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.3E-20 4.5E-25 132.4 10.3 82 34-125 4-85 (85)
23 1x4h_A RNA-binding protein 28; 99.8 3.6E-20 1.2E-24 136.6 13.0 87 33-129 11-103 (111)
24 1x5t_A Splicing factor 3B subu 99.8 1.5E-20 5.1E-25 135.2 10.2 85 35-129 3-88 (96)
25 2d9p_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 134.9 12.3 85 34-130 12-96 (103)
26 2cqd_A RNA-binding region cont 99.8 1.1E-19 3.6E-24 135.5 14.8 86 32-128 12-97 (116)
27 2x1f_A MRNA 3'-END-processing 99.8 3.3E-20 1.1E-24 133.7 11.6 85 36-130 1-85 (96)
28 2cph_A RNA binding motif prote 99.8 4.8E-20 1.6E-24 135.1 12.5 87 33-129 11-99 (107)
29 3beg_B Splicing factor, argini 99.8 1.1E-20 3.9E-25 141.1 9.2 73 31-120 10-82 (115)
30 3ex7_B RNA-binding protein 8A; 99.8 1.8E-20 6.1E-25 141.5 10.2 86 35-130 20-105 (126)
31 2fy1_A RNA-binding motif prote 99.8 3.4E-20 1.2E-24 138.8 11.6 85 34-129 4-88 (116)
32 2cpe_A RNA-binding protein EWS 99.8 3.6E-20 1.2E-24 137.3 11.5 87 33-129 11-105 (113)
33 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-20 1.2E-24 145.0 12.0 85 35-129 37-121 (156)
34 2cq3_A RNA-binding protein 9; 99.8 1.3E-19 4.3E-24 132.2 13.9 86 33-130 11-96 (103)
35 2dnh_A Bruno-like 5, RNA bindi 99.8 7.6E-20 2.6E-24 133.7 12.7 85 35-130 13-100 (105)
36 3ulh_A THO complex subunit 4; 99.8 4.2E-20 1.4E-24 135.5 11.4 84 31-125 23-106 (107)
37 1wi8_A EIF-4B, eukaryotic tran 99.8 7.5E-20 2.6E-24 133.7 12.3 84 35-130 13-97 (104)
38 2do0_A HnRNP M, heterogeneous 99.8 1.3E-19 4.3E-24 134.4 13.7 86 33-129 11-96 (114)
39 2cpf_A RNA binding motif prote 99.8 3.1E-20 1.1E-24 134.1 10.1 85 35-129 3-90 (98)
40 1p27_B RNA-binding protein 8A; 99.8 3E-20 1E-24 136.1 10.1 84 35-128 21-104 (106)
41 4a8x_A RNA-binding protein wit 99.8 3.7E-20 1.3E-24 130.8 9.9 83 36-128 3-86 (88)
42 2div_A TRNA selenocysteine ass 99.8 3.4E-20 1.2E-24 134.2 9.9 85 34-128 6-95 (99)
43 2kxn_B Transformer-2 protein h 99.8 3E-20 1E-24 141.7 10.1 86 33-128 42-127 (129)
44 1oo0_B CG8781-PA, drosophila Y 99.8 5.3E-20 1.8E-24 135.7 11.1 84 35-128 24-107 (110)
45 2dng_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 132.4 12.7 83 35-129 13-95 (103)
46 2dgv_A HnRNP M, heterogeneous 99.8 5.3E-20 1.8E-24 131.3 10.5 85 33-129 4-88 (92)
47 3ns6_A Eukaryotic translation 99.8 9E-21 3.1E-25 138.2 6.1 83 35-127 4-93 (100)
48 1wel_A RNA-binding protein 12; 99.8 1.9E-20 6.5E-25 141.4 7.9 82 35-127 23-104 (124)
49 4f25_A Polyadenylate-binding p 99.8 5.9E-20 2E-24 137.1 10.4 81 37-129 5-85 (115)
50 3p5t_L Cleavage and polyadenyl 99.8 7.8E-21 2.7E-25 135.7 5.3 83 38-130 2-86 (90)
51 1u6f_A Tcubp1, RNA-binding pro 99.8 7.8E-20 2.7E-24 140.2 11.3 88 33-130 38-125 (139)
52 2dgu_A Heterogeneous nuclear r 99.8 1.9E-19 6.3E-24 131.5 12.7 81 33-131 7-87 (103)
53 2cqp_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 133.4 9.2 85 33-127 11-95 (98)
54 2dgp_A Bruno-like 4, RNA bindi 99.8 5.2E-20 1.8E-24 134.8 9.8 86 34-129 10-98 (106)
55 2ywk_A Putative RNA-binding pr 99.8 5.1E-20 1.8E-24 132.1 9.5 83 33-126 12-94 (95)
56 2la6_A RNA-binding protein FUS 99.8 8.1E-20 2.8E-24 132.4 10.5 81 35-125 11-99 (99)
57 2ek1_A RNA-binding protein 12; 99.8 2E-20 6.8E-25 134.3 7.0 84 33-126 11-94 (95)
58 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.3E-19 7.9E-24 130.8 12.8 85 33-129 11-95 (103)
59 2dh8_A DAZ-associated protein 99.8 6E-20 2.1E-24 134.3 9.5 87 33-130 12-98 (105)
60 2khc_A Testis-specific RNP-typ 99.8 1.3E-19 4.3E-24 135.3 11.1 82 34-125 37-118 (118)
61 2jrs_A RNA-binding protein 39; 99.8 7.7E-20 2.6E-24 135.2 9.7 84 34-127 23-106 (108)
62 1x4a_A Splicing factor, argini 99.8 4.4E-19 1.5E-23 130.6 13.7 84 33-129 18-101 (109)
63 3ucg_A Polyadenylate-binding p 99.8 1.5E-19 5.1E-24 128.1 10.5 80 37-127 6-85 (89)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.4E-19 4.9E-24 143.1 11.1 85 35-129 70-154 (165)
65 2dhg_A TRNA selenocysteine ass 99.8 1.2E-19 4.2E-24 132.4 9.8 85 34-129 6-92 (104)
66 2cq4_A RNA binding motif prote 99.8 1.1E-19 3.7E-24 135.0 9.6 82 36-128 24-105 (114)
67 2dgx_A KIAA0430 protein; RRM d 99.8 2.4E-19 8.1E-24 129.5 11.1 82 35-129 7-92 (96)
68 2f3j_A RNA and export factor b 99.8 3E-19 1E-23 143.4 12.5 86 33-129 84-169 (177)
69 2kt5_A RNA and export factor-b 99.8 3.6E-19 1.2E-23 134.2 12.1 88 33-131 31-118 (124)
70 2dgw_A Probable RNA-binding pr 99.8 5.2E-19 1.8E-23 126.0 12.0 81 35-128 8-88 (91)
71 2cqg_A TDP-43, TAR DNA-binding 99.8 7E-19 2.4E-23 128.2 12.8 85 33-129 11-95 (103)
72 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.6E-19 1.2E-23 136.1 11.9 82 33-124 59-140 (140)
73 3s7r_A Heterogeneous nuclear r 99.8 4.5E-19 1.5E-23 125.3 11.2 80 34-124 8-87 (87)
74 3n9u_C Cleavage and polyadenyl 99.8 1.9E-19 6.5E-24 141.7 10.2 83 36-128 54-138 (156)
75 2cpi_A CCR4-NOT transcription 99.8 3.5E-19 1.2E-23 132.0 11.1 84 35-128 13-102 (111)
76 1why_A Hypothetical protein ri 99.8 6.4E-19 2.2E-23 127.2 12.1 80 33-128 13-94 (97)
77 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-19 5E-24 133.4 8.8 82 34-131 13-96 (105)
78 1p1t_A Cleavage stimulation fa 99.8 1.2E-19 4.3E-24 132.2 8.1 84 36-129 7-90 (104)
79 2m2b_A RNA-binding protein 10; 99.8 8.3E-20 2.9E-24 139.2 7.3 85 33-128 19-109 (131)
80 2rs2_A Musashi-1, RNA-binding 99.8 5.1E-19 1.7E-23 130.9 11.3 85 34-129 22-106 (109)
81 2dis_A Unnamed protein product 99.8 4.8E-19 1.7E-23 130.2 11.0 86 35-130 6-95 (109)
82 1wg5_A Heterogeneous nuclear r 99.8 7.7E-19 2.6E-23 128.7 11.6 83 34-128 12-95 (104)
83 2dgt_A RNA-binding protein 30; 99.8 8.2E-19 2.8E-23 125.4 11.3 79 34-130 7-85 (92)
84 1s79_A Lupus LA protein; RRM, 99.8 2.4E-19 8.1E-24 131.7 8.7 80 35-126 9-88 (103)
85 2err_A Ataxin-2-binding protei 99.8 4E-19 1.4E-23 131.3 10.0 87 29-127 21-107 (109)
86 2dnq_A RNA-binding protein 4B; 99.8 5.2E-19 1.8E-23 125.9 10.1 79 33-129 4-82 (90)
87 2fc9_A NCL protein; structure 99.8 1.4E-18 4.7E-23 126.2 12.6 81 34-128 12-92 (101)
88 2kn4_A Immunoglobulin G-bindin 99.8 5.1E-19 1.7E-23 138.4 10.9 86 35-130 68-153 (158)
89 1x4e_A RNA binding motif, sing 99.8 7E-20 2.4E-24 128.9 5.4 80 35-124 3-82 (85)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-19 6.2E-24 131.0 7.7 83 34-128 16-99 (100)
91 1x4b_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 131.7 10.3 84 35-129 25-108 (116)
92 2cq1_A PTB-like protein L; RRM 99.8 1E-18 3.5E-23 128.0 11.6 81 35-131 13-95 (101)
93 2cpy_A RNA-binding protein 12; 99.8 5.2E-19 1.8E-23 131.7 10.0 83 34-128 12-95 (114)
94 2jwn_A Embryonic polyadenylate 99.8 6.4E-19 2.2E-23 132.6 10.5 81 37-128 36-116 (124)
95 1x4d_A Matrin 3; structural ge 99.8 2.7E-19 9.2E-24 131.4 8.1 78 35-128 13-93 (102)
96 2mss_A Protein (musashi1); RNA 99.8 1.9E-19 6.5E-24 123.7 6.8 75 39-124 1-75 (75)
97 2lea_A Serine/arginine-rich sp 99.8 1.7E-19 5.8E-24 138.6 7.2 86 35-130 45-130 (135)
98 1x5o_A RNA binding motif, sing 99.8 1.4E-18 4.8E-23 128.8 11.9 84 33-127 21-112 (114)
99 1wez_A HnRNP H', FTP-3, hetero 99.8 7.7E-19 2.6E-23 128.6 10.1 82 34-128 12-93 (102)
100 1wex_A Hypothetical protein (r 99.8 1.2E-18 4.1E-23 128.3 10.8 81 34-130 12-94 (104)
101 2dnp_A RNA-binding protein 14; 99.8 1.3E-18 4.3E-23 123.9 10.5 78 34-129 6-83 (90)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2E-19 7E-24 124.0 6.1 76 38-124 1-76 (77)
103 3r27_A HnRNP L, heterogeneous 99.8 9.2E-19 3.2E-23 128.0 9.7 78 35-128 19-98 (100)
104 2ytc_A PRE-mRNA-splicing facto 99.8 1.9E-18 6.5E-23 121.4 10.9 76 34-125 9-85 (85)
105 2ad9_A Polypyrimidine tract-bi 99.8 8.4E-19 2.9E-23 132.2 9.6 81 35-131 29-111 (119)
106 2wbr_A GW182, gawky, LD47780P; 99.8 9.2E-19 3.2E-23 124.6 9.0 74 36-125 6-79 (89)
107 2ki2_A SS-DNA binding protein 99.8 1.1E-19 3.8E-24 129.2 4.2 82 38-130 2-83 (90)
108 2fc8_A NCL protein; structure 99.8 3E-18 1E-22 124.5 11.8 82 35-129 13-94 (102)
109 2e5j_A Methenyltetrahydrofolat 99.8 1.5E-18 5.2E-23 125.3 10.0 81 33-128 15-95 (97)
110 2db1_A Heterogeneous nuclear r 99.8 1.5E-18 5E-23 130.2 10.3 82 34-127 14-98 (118)
111 2cpj_A Non-POU domain-containi 99.8 1.9E-18 6.5E-23 125.1 10.4 78 35-128 13-90 (99)
112 3q2s_C Cleavage and polyadenyl 99.8 5.3E-19 1.8E-23 147.3 8.4 83 36-128 67-151 (229)
113 2jvr_A Nucleolar protein 3; RN 99.8 7.8E-19 2.7E-23 130.8 8.4 79 35-127 26-105 (111)
114 2nlw_A Eukaryotic translation 99.8 8.6E-19 2.9E-23 128.6 8.5 81 35-127 13-100 (105)
115 2cpd_A Apobec-1 stimulating pr 99.8 6.2E-18 2.1E-22 122.4 12.7 77 34-128 12-90 (99)
116 2hgl_A HNRPF protein, heteroge 99.8 1.2E-18 4.1E-23 134.3 8.6 84 32-127 39-125 (136)
117 2cpx_A Hypothetical protein FL 99.8 2.5E-19 8.4E-24 133.0 4.5 86 35-130 23-108 (115)
118 1x4g_A Nucleolysin TIAR; struc 99.8 2.6E-18 8.8E-23 126.6 9.9 79 35-129 23-101 (109)
119 2jvo_A Nucleolar protein 3; nu 99.8 2.8E-18 9.4E-23 126.8 9.8 78 34-129 28-105 (108)
120 2cqh_A IGF-II mRNA-binding pro 99.8 1.9E-18 6.6E-23 123.6 8.5 79 34-129 5-85 (93)
121 2xnq_A Nuclear polyadenylated 99.8 5.8E-18 2E-22 122.6 11.0 77 33-127 18-95 (97)
122 2hvz_A Splicing factor, argini 99.8 1.1E-18 3.7E-23 126.7 7.1 76 38-128 1-76 (101)
123 2kvi_A Nuclear polyadenylated 99.8 1.9E-18 6.5E-23 124.6 8.2 77 35-129 8-85 (96)
124 2krb_A Eukaryotic translation 99.8 1.1E-18 3.6E-23 122.0 6.5 73 37-121 1-80 (81)
125 2a3j_A U1 small nuclear ribonu 99.8 3.2E-18 1.1E-22 130.4 9.7 82 34-128 26-111 (127)
126 2e5g_A U6 snRNA-specific termi 99.8 5E-18 1.7E-22 121.8 10.1 78 35-128 6-83 (94)
127 1nu4_A U1A RNA binding domain; 99.8 1.8E-18 6E-23 124.5 7.6 83 34-129 5-91 (97)
128 2dnn_A RNA-binding protein 12; 99.8 3.7E-18 1.3E-22 126.7 9.4 78 37-127 16-93 (109)
129 1fj7_A Nucleolin RBD1, protein 99.8 2.2E-19 7.4E-24 130.5 2.6 83 35-129 15-97 (101)
130 2la4_A Nuclear and cytoplasmic 99.7 2.4E-18 8.2E-23 124.9 8.1 76 35-126 25-100 (101)
131 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-18 4.8E-23 127.9 6.5 82 34-127 8-92 (107)
132 1whx_A Hypothetical protein ri 99.7 4.2E-18 1.4E-22 126.4 8.7 76 37-128 10-85 (111)
133 3lqv_A PRE-mRNA branch site pr 99.7 6.9E-18 2.3E-22 125.3 9.8 80 35-127 6-85 (115)
134 2e44_A Insulin-like growth fac 99.7 8.5E-18 2.9E-22 120.8 9.9 79 35-127 13-92 (96)
135 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-18 3.6E-23 119.8 4.8 75 39-124 1-75 (75)
136 1fjc_A Nucleolin RBD2, protein 99.7 3.8E-18 1.3E-22 122.6 7.6 79 35-128 14-92 (96)
137 3egn_A RNA-binding protein 40; 99.7 1.4E-18 4.8E-23 134.0 5.2 86 35-130 43-133 (143)
138 1x5p_A Negative elongation fac 99.7 3.1E-17 1.1E-21 118.3 11.8 77 35-129 13-89 (97)
139 2lcw_A RNA-binding protein FUS 99.6 2E-19 6.8E-24 134.1 0.0 85 35-129 5-97 (116)
140 3md3_A Nuclear and cytoplasmic 99.7 2.1E-17 7.3E-22 128.3 11.5 81 35-125 85-165 (166)
141 4f02_A Polyadenylate-binding p 99.7 1.7E-17 6E-22 135.8 11.3 83 35-127 13-95 (213)
142 1fxl_A Paraneoplastic encephal 99.7 2.5E-17 8.5E-22 128.1 11.6 82 37-128 2-83 (167)
143 2hgn_A Heterogeneous nuclear r 99.7 2.5E-18 8.5E-23 133.0 5.3 82 35-129 44-125 (139)
144 2xs2_A Deleted in azoospermia- 99.7 4.3E-18 1.5E-22 123.7 6.0 81 35-128 7-87 (102)
145 2dha_A FLJ20171 protein; RRM d 99.7 9.5E-18 3.2E-22 127.1 8.0 81 35-127 21-105 (123)
146 1b7f_A Protein (SXL-lethal pro 99.7 2.3E-17 8E-22 128.7 10.5 83 36-128 2-84 (168)
147 1x4f_A Matrin 3; structural ge 99.7 1E-17 3.4E-22 125.0 7.9 80 34-129 22-104 (112)
148 1wg1_A KIAA1579 protein, homol 99.7 2.2E-17 7.7E-22 117.1 9.1 76 36-128 4-79 (88)
149 2qfj_A FBP-interacting repress 99.7 3.8E-17 1.3E-21 132.7 11.4 84 36-129 124-207 (216)
150 2i2y_A Fusion protein consists 99.7 2.2E-17 7.6E-22 128.2 9.6 81 33-128 69-149 (150)
151 2cq2_A Hypothetical protein LO 99.7 1.9E-17 6.4E-22 123.8 8.7 79 35-129 23-108 (114)
152 2dnl_A Cytoplasmic polyadenyla 99.7 3.6E-17 1.2E-21 121.6 9.5 80 34-126 5-87 (114)
153 1wf1_A RNA-binding protein RAL 99.7 1.3E-16 4.3E-21 117.7 12.1 77 35-128 25-101 (110)
154 2j8a_A Histone-lysine N-methyl 99.7 2.5E-17 8.4E-22 125.1 8.4 81 37-127 2-96 (136)
155 2yh0_A Splicing factor U2AF 65 99.7 5.1E-17 1.7E-21 130.2 10.4 85 35-129 112-196 (198)
156 2g4b_A Splicing factor U2AF 65 99.7 4.7E-17 1.6E-21 127.6 9.8 80 36-125 93-172 (172)
157 2hgm_A HNRPF protein, heteroge 99.7 2.2E-17 7.5E-22 125.6 7.6 79 35-126 40-120 (126)
158 1l3k_A Heterogeneous nuclear r 99.7 9.1E-17 3.1E-21 128.5 11.1 85 35-130 102-186 (196)
159 3zzy_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 121.7 11.3 77 38-129 29-108 (130)
160 2cjk_A Nuclear polyadenylated 99.7 3.5E-17 1.2E-21 127.7 8.0 80 37-127 87-166 (167)
161 3d2w_A TAR DNA-binding protein 99.7 1.6E-16 5.6E-21 113.2 10.2 77 33-128 7-85 (89)
162 4f02_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 133.7 7.7 80 37-128 103-182 (213)
163 3tyt_A Heterogeneous nuclear r 99.7 1.7E-16 5.9E-21 129.9 11.4 78 36-128 3-81 (205)
164 1sjr_A Polypyrimidine tract-bi 99.7 8.5E-17 2.9E-21 127.3 9.2 78 37-128 46-125 (164)
165 1l3k_A Heterogeneous nuclear r 99.7 1.3E-16 4.4E-21 127.6 10.3 83 35-128 11-93 (196)
166 2e5i_A Heterogeneous nuclear r 99.7 2.3E-16 7.8E-21 119.6 11.0 74 39-128 27-103 (124)
167 1b7f_A Protein (SXL-lethal pro 99.7 1.8E-16 6.3E-21 123.6 10.6 80 35-124 87-168 (168)
168 2qfj_A FBP-interacting repress 99.7 1.2E-16 4.2E-21 129.6 9.5 82 37-128 28-109 (216)
169 2bz2_A Negative elongation fac 99.7 1.7E-16 5.9E-21 119.6 9.3 77 35-129 37-113 (121)
170 2diu_A KIAA0430 protein; struc 99.7 1.8E-16 6.1E-21 114.0 8.8 74 36-129 7-86 (96)
171 3md3_A Nuclear and cytoplasmic 99.7 3.2E-16 1.1E-20 121.6 10.8 80 38-128 1-80 (166)
172 2hzc_A Splicing factor U2AF 65 99.7 1.6E-16 5.4E-21 111.8 7.9 72 35-123 4-86 (87)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 1.4E-16 4.7E-21 112.8 7.4 78 35-129 3-80 (88)
174 1fxl_A Paraneoplastic encephal 99.7 3.4E-16 1.2E-20 121.6 9.9 79 36-124 87-167 (167)
175 2pe8_A Splicing factor 45; RRM 99.7 7.6E-16 2.6E-20 113.4 10.7 87 35-126 6-93 (105)
176 3nmr_A Cugbp ELAV-like family 99.6 5.8E-16 2E-20 121.3 9.4 79 36-125 94-175 (175)
177 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-15 4.5E-20 129.0 12.0 83 33-128 5-91 (282)
178 3nmr_A Cugbp ELAV-like family 99.6 8.1E-16 2.8E-20 120.5 10.0 82 37-128 3-89 (175)
179 1fje_B Nucleolin RBD12, protei 99.6 9.1E-16 3.1E-20 120.8 9.8 78 35-127 97-174 (175)
180 3u1l_A PRE-mRNA-splicing facto 99.6 5.5E-16 1.9E-20 129.9 8.3 79 34-128 131-230 (240)
181 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.1E-20 122.8 10.7 79 37-127 109-187 (193)
182 2cjk_A Nuclear polyadenylated 99.6 8.6E-16 2.9E-20 119.8 8.4 78 37-126 3-80 (167)
183 2dit_A HIV TAT specific factor 99.6 7.5E-15 2.6E-19 108.7 11.6 90 35-128 13-103 (112)
184 3smz_A Protein raver-1, ribonu 99.6 5.1E-15 1.7E-19 125.5 11.8 83 36-128 94-176 (284)
185 2adc_A Polypyrimidine tract-bi 99.6 1.6E-15 5.6E-20 125.4 8.5 79 35-128 32-111 (229)
186 3smz_A Protein raver-1, ribonu 99.6 4.2E-15 1.4E-19 126.0 10.8 85 35-130 182-267 (284)
187 3pgw_A U1-A; protein-RNA compl 99.6 4.4E-15 1.5E-19 125.8 10.7 76 35-125 205-281 (282)
188 2ghp_A U4/U6 snRNA-associated 99.6 6.5E-15 2.2E-19 125.3 10.8 83 35-127 208-291 (292)
189 1qm9_A Polypyrimidine tract-bi 99.6 2.2E-15 7.7E-20 121.1 7.2 77 37-128 3-80 (198)
190 3tyt_A Heterogeneous nuclear r 99.6 6.1E-15 2.1E-19 120.6 8.1 78 35-124 121-204 (205)
191 3v4m_A Splicing factor U2AF 65 99.6 1.5E-14 5.2E-19 106.3 9.4 89 36-127 4-97 (105)
192 1qm9_A Polypyrimidine tract-bi 99.6 6.5E-15 2.2E-19 118.4 8.0 78 35-127 118-197 (198)
193 1fje_B Nucleolin RBD12, protei 99.6 1.1E-15 3.9E-20 120.2 3.4 84 33-128 9-92 (175)
194 2adc_A Polypyrimidine tract-bi 99.6 1.3E-14 4.4E-19 119.9 9.8 78 35-127 149-228 (229)
195 3sde_A Paraspeckle component 1 99.5 2E-14 7E-19 121.1 10.3 76 35-126 20-95 (261)
196 1jmt_A Splicing factor U2AF 35 99.5 4E-15 1.4E-19 109.3 4.9 66 59-125 27-104 (104)
197 2ghp_A U4/U6 snRNA-associated 99.5 1.7E-14 5.8E-19 122.7 9.0 83 36-129 116-199 (292)
198 3ue2_A Poly(U)-binding-splicin 99.5 4.5E-14 1.5E-18 106.0 9.1 86 36-126 19-108 (118)
199 2g4b_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 110.9 8.5 75 37-128 4-89 (172)
200 3sde_A Paraspeckle component 1 99.5 4.3E-14 1.5E-18 119.1 9.2 80 37-127 96-179 (261)
201 2yh0_A Splicing factor U2AF 65 99.5 4.3E-14 1.5E-18 113.0 8.7 76 36-128 3-89 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.7E-13 1.6E-17 97.6 10.9 65 58-129 28-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.7E-13 5.8E-18 120.3 9.5 75 35-125 16-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.8E-12 6.3E-17 96.6 10.5 87 36-126 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 1.6E-11 5.4E-16 87.4 9.1 75 35-127 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 3.2E-11 1.1E-15 90.7 10.8 82 30-126 11-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.6E-15 83.6 4.4 73 35-125 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 5.6E-10 1.9E-14 91.5 8.6 68 59-126 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 7E-08 2.4E-12 70.6 8.0 73 35-123 19-96 (117)
210 1wey_A Calcipressin 1; structu 98.3 2.3E-06 7.9E-11 62.0 7.6 82 35-127 3-84 (104)
211 1uw4_A UPF3X; nonsense mediate 98.2 1.6E-05 5.4E-10 56.5 9.9 80 38-127 2-88 (91)
212 2dhx_A Poly (ADP-ribose) polym 98.2 2.2E-05 7.4E-10 56.8 10.1 73 35-126 6-83 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.9 4.6E-05 1.6E-09 56.6 8.2 73 34-124 21-94 (119)
214 2l08_A Regulator of nonsense t 97.7 0.00025 8.6E-09 50.7 9.2 81 36-126 8-95 (97)
215 3p3d_A Nucleoporin 53; structu 97.5 0.00013 4.3E-09 55.0 5.5 78 36-125 6-97 (132)
216 1whv_A Poly(A)-specific ribonu 97.4 0.0007 2.4E-08 48.3 7.3 54 38-110 17-70 (100)
217 3ctr_A Poly(A)-specific ribonu 97.2 0.0005 1.7E-08 49.2 4.9 53 39-110 8-60 (101)
218 3pq1_A Poly(A) RNA polymerase; 96.4 0.0017 5.8E-08 58.8 3.2 56 37-108 53-108 (464)
219 2i2y_A Fusion protein consists 96.3 0.0017 5.7E-08 49.3 2.5 40 86-126 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.1 0.0051 1.7E-07 46.8 4.0 34 77-112 3-36 (158)
221 2g0c_A ATP-dependent RNA helic 92.2 0.32 1.1E-05 32.3 5.5 58 59-125 13-75 (76)
222 3d45_A Poly(A)-specific ribonu 90.7 0.67 2.3E-05 42.2 7.7 54 40-111 442-495 (507)
223 4eyt_A Telomerase associated p 89.4 2.1 7.2E-05 29.9 7.6 57 35-109 10-66 (129)
224 3pgw_S U1-70K; protein-RNA com 85.9 1.3 4.4E-05 39.5 6.2 9 100-108 152-160 (437)
225 4e8u_A Putative uncharacterize 73.5 14 0.00047 28.7 7.4 65 37-106 12-80 (172)
226 3fry_A Probable copper-exporti 72.5 9.6 0.00033 24.0 5.6 54 38-108 7-60 (73)
227 3lpe_A Putative transcription 63.2 18 0.00063 24.7 5.7 35 74-113 40-74 (92)
228 3dxs_X Copper-transporting ATP 61.9 25 0.00084 21.8 5.9 55 39-109 5-63 (74)
229 4a4j_A Pacszia, cation-transpo 53.7 17 0.00057 22.2 3.9 55 38-108 4-61 (69)
230 2cfx_A HTH-type transcriptiona 51.2 61 0.0021 23.3 7.3 48 60-111 77-124 (144)
231 1wj6_A KIAA0049 protein, RSGI 49.5 12 0.00041 26.4 2.8 89 29-125 6-94 (101)
232 1yg0_A COP associated protein; 49.5 37 0.0013 19.8 5.8 55 39-109 4-61 (66)
233 2xmw_A PACS-N, cation-transpor 47.5 42 0.0014 19.8 6.0 55 39-109 6-63 (71)
234 3ts2_A Protein LIN-28 homolog 46.7 4 0.00014 30.8 -0.1 28 62-97 2-29 (148)
235 2zbc_A 83AA long hypothetical 44.9 58 0.002 20.7 6.6 44 60-107 14-57 (83)
236 2cvi_A 75AA long hypothetical 43.9 63 0.0022 20.9 6.3 44 60-107 14-57 (83)
237 1q8l_A Copper-transporting ATP 43.7 59 0.002 20.5 7.3 57 37-109 10-70 (84)
238 2kt2_A Mercuric reductase; nme 43.6 49 0.0017 19.5 6.1 55 38-108 2-59 (69)
239 2lfv_A Protein DAMX; cell divi 49.3 5 0.00017 28.6 0.0 56 59-116 34-91 (106)
240 2g9o_A Copper-transporting ATP 42.7 45 0.0015 21.7 4.9 56 38-109 5-64 (90)
241 2l3m_A Copper-ION-binding prot 41.9 53 0.0018 19.4 5.6 54 39-108 8-65 (71)
242 1cpz_A Protein (COPZ); copper 40.6 54 0.0018 19.1 7.3 54 39-108 3-60 (68)
243 1y3j_A Copper-transporting ATP 40.5 59 0.002 19.8 5.1 55 39-109 6-64 (77)
244 2ofg_X Zinc-transporting ATPas 40.4 85 0.0029 21.3 7.2 56 38-109 10-69 (111)
245 2cyy_A Putative HTH-type trans 39.8 87 0.003 22.6 6.6 48 60-111 79-126 (151)
246 3cjk_B Copper-transporting ATP 38.5 64 0.0022 19.4 6.0 55 39-109 5-63 (75)
247 1osd_A MERP, hypothetical prot 38.1 62 0.0021 19.1 6.4 56 38-109 5-64 (72)
248 2e1c_A Putative HTH-type trans 38.0 90 0.0031 23.4 6.5 46 60-109 99-144 (171)
249 1kvi_A Copper-transporting ATP 36.6 72 0.0025 19.4 6.2 57 37-109 9-69 (79)
250 1p6t_A Potential copper-transp 36.4 97 0.0033 21.7 6.3 55 39-109 77-135 (151)
251 1aw0_A Menkes copper-transport 36.3 48 0.0017 19.7 4.0 55 39-109 6-64 (72)
252 1xn9_A 30S ribosomal protein S 36.3 64 0.0022 22.6 4.9 46 59-105 30-80 (101)
253 2v94_A RPS24, 30S ribosomal pr 34.9 77 0.0026 22.4 5.2 45 59-104 39-88 (107)
254 1yjr_A Copper-transporting ATP 34.7 73 0.0025 18.9 6.8 56 37-108 5-64 (75)
255 1fvq_A Copper-transporting ATP 34.3 73 0.0025 18.8 5.2 55 39-109 5-62 (72)
256 1ywx_A 30S ribosomal protein S 33.3 73 0.0025 22.3 4.8 45 59-104 30-79 (102)
257 1mwy_A ZNTA; open-faced beta-s 33.3 79 0.0027 18.9 7.2 55 39-109 6-62 (73)
258 3u5c_Y RP50, 40S ribosomal pro 33.1 1.1E+02 0.0037 22.6 5.9 46 58-104 34-84 (135)
259 2e7g_A Putative ribosome-bindi 31.5 1E+02 0.0035 22.2 5.6 36 71-110 43-79 (129)
260 2qif_A Copper chaperone COPZ; 31.1 77 0.0026 18.1 5.9 54 39-108 5-62 (69)
261 3lo3_A Uncharacterized conserv 30.8 89 0.003 21.1 4.9 20 88-107 52-71 (94)
262 2cu1_A Mitogen-activated prote 30.7 29 0.00099 24.4 2.3 46 59-112 28-74 (103)
263 1opz_A Potential copper-transp 30.5 87 0.003 18.5 7.2 56 38-109 8-67 (76)
264 2exu_A Transcription initiatio 29.7 1.1E+02 0.0037 24.1 5.8 28 87-114 147-174 (200)
265 1i1g_A Transcriptional regulat 28.7 1.1E+02 0.0038 21.5 5.5 48 60-111 76-124 (141)
266 2ew9_A Copper-transporting ATP 28.5 79 0.0027 22.1 4.6 56 38-109 82-141 (149)
267 2crl_A Copper chaperone for su 28.2 1.1E+02 0.0038 20.3 5.1 54 39-109 22-76 (98)
268 1vd2_A Protein kinase C, IOTA 28.2 79 0.0027 21.5 4.2 53 40-109 17-74 (89)
269 2npt_B Mitogen-activated prote 27.7 76 0.0026 22.1 3.9 45 59-111 40-85 (100)
270 2okq_A Hypothetical protein YB 27.2 1.1E+02 0.0037 22.8 5.0 47 62-108 48-109 (141)
271 2kyz_A Heavy metal binding pro 27.2 46 0.0016 19.8 2.7 53 39-108 4-56 (67)
272 2xzm_P RPS24E; ribosome, trans 26.3 1.2E+02 0.0041 22.8 5.2 45 59-104 33-82 (149)
273 2bkf_A Zinc-finger protein NBR 26.2 64 0.0022 22.0 3.3 58 58-123 27-84 (87)
274 2w25_A Probable transcriptiona 26.0 1.2E+02 0.004 21.8 5.2 44 62-109 82-125 (150)
275 3iwl_A Copper transport protei 25.9 1.1E+02 0.0039 18.3 4.5 52 39-108 5-57 (68)
276 2ldi_A Zinc-transporting ATPas 25.9 1E+02 0.0035 17.8 6.0 54 39-108 6-63 (71)
277 2rop_A Copper-transporting ATP 25.2 2.1E+02 0.0073 21.3 6.9 56 38-109 124-183 (202)
278 2djw_A Probable transcriptiona 24.6 79 0.0027 20.8 3.7 43 60-106 14-56 (92)
279 2dbb_A Putative HTH-type trans 24.4 1.1E+02 0.0037 22.0 4.8 46 61-110 82-129 (151)
280 2lea_A Serine/arginine-rich sp 24.3 16 0.00055 26.4 0.0 28 89-116 4-31 (135)
281 3h7h_B Transcription elongatio 24.2 84 0.0029 22.0 3.8 35 73-112 40-74 (106)
282 1jww_A Potential copper-transp 24.2 1.2E+02 0.0042 18.2 4.7 55 39-109 6-64 (80)
283 3i4p_A Transcriptional regulat 24.0 1.9E+02 0.0067 21.1 6.2 45 61-109 79-123 (162)
284 2jrh_A Mitogen-activated prote 24.0 84 0.0029 21.6 3.6 45 59-111 24-69 (94)
285 2e5p_A Protein PHF1, PHD finge 23.9 43 0.0015 21.7 2.0 10 89-98 37-46 (68)
286 4bby_A Alkyldihydroxyacetoneph 23.4 77 0.0026 29.4 4.5 50 59-109 355-408 (658)
287 2p5v_A Transcriptional regulat 23.1 2.2E+02 0.0074 20.6 7.0 46 61-110 85-131 (162)
288 2g1d_A 30S ribosomal protein S 22.2 69 0.0024 22.3 3.0 44 59-103 31-79 (98)
289 2ns6_A Mobilization protein A; 21.8 2E+02 0.0069 22.1 6.0 49 37-98 70-126 (185)
290 3mfb_A Uncharacterized protein 21.7 1.2E+02 0.0041 23.0 4.5 36 59-94 3-41 (157)
291 2kkh_A Putative heavy metal tr 21.7 1.7E+02 0.0057 18.8 7.5 56 38-109 18-77 (95)
292 2cg4_A Regulatory protein ASNC 21.5 2.3E+02 0.0077 20.2 7.4 47 60-110 81-128 (152)
293 3swz_A Steroid 17-alpha-hydrox 21.2 1E+02 0.0035 26.4 4.7 62 40-117 17-78 (494)
294 2c60_A Human mitogen-activated 21.1 83 0.0028 22.2 3.2 45 59-111 51-96 (111)
295 2pn6_A ST1022, 150AA long hypo 21.0 2.3E+02 0.0078 20.1 6.4 48 60-111 77-125 (150)
296 2f40_A Hypothetical protein PF 20.9 13 0.00044 25.6 -1.0 32 91-122 47-79 (96)
297 2dzr_A General transcription f 20.8 1.2E+02 0.0042 21.0 4.0 40 37-78 41-80 (99)
298 3p8b_B Transcription antitermi 20.4 78 0.0027 23.3 3.2 35 74-113 33-67 (152)
299 3fut_A Dimethyladenosine trans 20.4 68 0.0023 26.2 3.1 31 38-79 111-141 (271)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=1.5e-21 Score=176.92 Aligned_cols=86 Identities=29% Similarity=0.457 Sum_probs=80.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.+.++|||+|||+. ||+++|.++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.|||++|
T Consensus 100 ~~~~~lfV~nL~~~----------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 100 DAFKTLFVARVNYD----------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 44689999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCC
Q 027685 115 LGRELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~ 130 (220)
+|+.|.|+|+.+....
T Consensus 170 ~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 170 DGRRVLVDVERGRTVK 185 (437)
T ss_pred CCEEEEEEEeCCCCCC
Confidence 9999999999876543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=145.86 Aligned_cols=81 Identities=30% Similarity=0.533 Sum_probs=78.1
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||++ +|+++|+++|++||+|..|.|+.+..+|.++|||||+|.+.++|++||+.|||..|+
T Consensus 18 ~gt~lfV~nLp~~----------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 18 QGTNLIVNYLPQN----------MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CCSEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecc
Q 027685 116 GRELTVVFAEE 126 (220)
Q Consensus 116 g~~l~v~~a~~ 126 (220)
|+.|.|+||+|
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEeeC
Confidence 99999999975
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=142.85 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.+.++|||+|||+. +++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|
T Consensus 4 ~p~~~lfV~nL~~~----------~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 4 IPLKEVTFARLNDN----------VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp SCCCEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCC----------CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 55789999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|+++....
T Consensus 74 ~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 74 MGNIIHAQLDIKGQ 87 (110)
T ss_dssp TTEECEEEECSTTH
T ss_pred CCeEEEEEECCCCc
Confidence 99999999987543
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=138.48 Aligned_cols=87 Identities=32% Similarity=0.491 Sum_probs=81.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..+..++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 11 RADDNATIRVTNLSED----------TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp CCSSSEEEEEESCCTT----------CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3456889999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.++..
T Consensus 81 ~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 81 GYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EETTEECEEEESSCCCC
T ss_pred eeCCcEEEEEECCCCCC
Confidence 99999999999987654
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=137.30 Aligned_cols=87 Identities=33% Similarity=0.552 Sum_probs=81.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||.
T Consensus 4 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYT----------SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp CCCSCEEEEEECCCTT----------CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456789999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.++..
T Consensus 74 ~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 74 VFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp ESSSCEEEEEECCCCST
T ss_pred EECCcEEEEEEcCCCcc
Confidence 99999999999987654
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=135.06 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=78.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..+..++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+.
T Consensus 12 ~~~~~~~l~V~nlp~~----------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFS----------LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CCCCTTSEEEESCCTT----------SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEECCCCC----------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 3456789999999999 999999999999999999999999888999999999999999999999999999
Q ss_pred eecCeEEEEEEec
Q 027685 113 LLLGRELTVVFAE 125 (220)
Q Consensus 113 ~i~g~~l~v~~a~ 125 (220)
.|+|+.|.|+||+
T Consensus 82 ~~~g~~l~v~~ak 94 (94)
T 2e5h_A 82 QLFGRVIKASIAI 94 (94)
T ss_dssp EETTEEEEEEECC
T ss_pred eeCCcEEEEEecC
Confidence 9999999999974
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=138.48 Aligned_cols=87 Identities=34% Similarity=0.483 Sum_probs=81.8
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.||+..
T Consensus 9 ~~~~~~l~V~nLp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEE----------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp CCCCSCEEEESCCSS----------CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 356789999999999 9999999999999999999999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCCC
Q 027685 114 LLGRELTVVFAEENRKK 130 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~~ 130 (220)
|+|+.|.|+++.+....
T Consensus 79 ~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 79 LFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp ETTEEEEEEECCCCCCC
T ss_pred ECCcEEEEEeCCCCCCC
Confidence 99999999999876544
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=136.19 Aligned_cols=87 Identities=26% Similarity=0.480 Sum_probs=80.9
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+ ||+.
T Consensus 6 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~ 74 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHN----------CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH 74 (99)
T ss_dssp CCSSCCEEEEESCCSS----------CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC
Confidence 3456889999999999 9999999999999999999999998899999999999999999999998 9999
Q ss_pred eecCeEEEEEEeccCCCC
Q 027685 113 LLLGRELTVVFAEENRKK 130 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~ 130 (220)
.|+|+.|.|+++.++...
T Consensus 75 ~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 75 DIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp BSSSCBCEEEECCCCCCC
T ss_pred EECCeEEEEEECCCCccc
Confidence 999999999999876543
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=140.40 Aligned_cols=85 Identities=22% Similarity=0.460 Sum_probs=77.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC-Ccee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~-g~~i 114 (220)
+.+|||+|||++ +|+++|.++|++|| +|..|.|+.++.++.++|||||+|.+.++|++||+.|+ +..|
T Consensus 1 S~~i~v~nLp~~----------~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~ 70 (91)
T 2lxi_A 1 SNIVMLRMLPQA----------ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI 70 (91)
T ss_dssp CCEEEEETCCSS----------CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE
Confidence 368999999999 99999999999999 89999999999999999999999999999999999874 5679
Q ss_pred cCeEEEEEEeccCCCCC
Q 027685 115 LGRELTVVFAEENRKKP 131 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~~ 131 (220)
+|+.|.|+||.++.+..
T Consensus 71 ~gr~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 71 LGQKVSMHYSDPKPKIN 87 (91)
T ss_dssp TTEEEEEECCCSCCCCS
T ss_pred CCEEEEEEEcCCCCCCC
Confidence 99999999998766543
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=137.83 Aligned_cols=87 Identities=29% Similarity=0.404 Sum_probs=81.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..+..++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEK----------VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp CCCTTTEEEEECCCTT----------CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred cCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3456889999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.+...
T Consensus 81 ~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 81 KLYGKPIRVNKASAHNK 97 (105)
T ss_dssp BCSSCBCEEEETTTTSC
T ss_pred eECCeEEEEEECCCCCc
Confidence 99999999999987654
No 11
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=137.64 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||+|..|.|+.+ +||||+|.+.++|++||+.||++.
T Consensus 12 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~ 74 (108)
T 1x4c_A 12 RRSENRVVVSGLPPS----------GSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTK 74 (108)
T ss_dssp CSCCCEEEEESCCSS----------CCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCC
Confidence 355789999999999 999999999999999999999864 899999999999999999999999
Q ss_pred ecC-----eEEEEEEeccC
Q 027685 114 LLG-----RELTVVFAEEN 127 (220)
Q Consensus 114 i~g-----~~l~v~~a~~~ 127 (220)
|.| +.|.|++|.+.
T Consensus 75 ~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 75 FRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp EECTTSCEEEEEEEESSCC
T ss_pred ccCCcCcceEEEEEeCCCC
Confidence 999 99999999864
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=134.81 Aligned_cols=85 Identities=31% Similarity=0.537 Sum_probs=80.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
..+++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|
T Consensus 3 ~~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 3 SGSSGLYVGSLHFN----------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp SCCCEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 45789999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|+++.++..
T Consensus 73 ~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 73 AGRPMRVGHVTERLD 87 (95)
T ss_dssp SSSCCEEEESSCCCC
T ss_pred CCcEEEEEEcccccC
Confidence 999999999987653
No 13
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=137.98 Aligned_cols=86 Identities=44% Similarity=0.671 Sum_probs=80.9
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.|||..
T Consensus 10 ~~~~~~l~V~nLp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 10 VDGMITLKVDNLTYR----------TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp CSCCCEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred CCCCeEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 355789999999999 9999999999999999999999998889999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.....
T Consensus 80 ~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 80 LDGRELRVQVARYGRR 95 (103)
T ss_dssp BTTBCCEEEECSSCCS
T ss_pred ECCcEEEEEECCcCCC
Confidence 9999999999987654
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.5e-20 Score=131.47 Aligned_cols=81 Identities=32% Similarity=0.463 Sum_probs=77.7
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
++|||+|||.+ +++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|+|+
T Consensus 2 ~~l~V~nlp~~----------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 2 FNLFVGDLNVN----------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp EEEEEECCCTT----------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred eEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 68999999999 99999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEEEeccCC
Q 027685 118 ELTVVFAEENR 128 (220)
Q Consensus 118 ~l~v~~a~~~~ 128 (220)
.|.|+++.++.
T Consensus 72 ~l~v~~a~~~~ 82 (83)
T 3md1_A 72 PLRINWAAKLE 82 (83)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEecCcCC
Confidence 99999998754
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=138.62 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=79.3
Q ss_pred CCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc--eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH
Q 027685 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR--LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 30 ~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 107 (220)
|+.....-.||||+|||++ +|+++|.++|++||. |..|.|+.|+.+|.++|||||+|.+.++|++||+
T Consensus 2 g~~~~~~m~tlfV~nL~~~----------~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 2 GHHHHHHMDTIILRNIAPH----------TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCCSSCCCCEEEEESCCTT----------CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHH
T ss_pred CcccCCccCEEEEeCCCCc----------CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHH
Confidence 4445566789999999999 999999999999995 5689999999999999999999999999999999
Q ss_pred hhCCc----eecCeEEEEEEecc
Q 027685 108 HMDGY----LLLGRELTVVFAEE 126 (220)
Q Consensus 108 ~l~g~----~i~g~~l~v~~a~~ 126 (220)
.|||. .|+|++|.|+||+.
T Consensus 72 ~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 72 ILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHSSSSCEEETTEEEEEEECCC
T ss_pred HhcCCCCCceECCEEEEEEEccC
Confidence 99997 59999999999874
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.3e-21 Score=137.88 Aligned_cols=87 Identities=29% Similarity=0.456 Sum_probs=81.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||++ +++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+.
T Consensus 8 ~~~~~~~l~v~nLp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFD----------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CCCCCSEEEEESCCTT----------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCCCC----------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 4456889999999999 999999999999999999999999888999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.+...
T Consensus 78 ~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 78 SVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CTTSCCCEEEEEECCCC
T ss_pred EECCeEEEEEECCCCCC
Confidence 99999999999987653
No 17
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=4.8e-20 Score=136.99 Aligned_cols=88 Identities=28% Similarity=0.527 Sum_probs=81.9
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPE----------ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp CSTTCEEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3355789999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCCC
Q 027685 113 LLLGRELTVVFAEENRKK 130 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~ 130 (220)
.|+|+.|.|+|+.++...
T Consensus 81 ~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 81 WLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EETTEECEEEESSCCCCC
T ss_pred EECCEEEEEEEccCCCCC
Confidence 999999999999876544
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=133.12 Aligned_cols=83 Identities=28% Similarity=0.521 Sum_probs=76.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.+ +++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|
T Consensus 4 ~~~~~l~v~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 4 GSHFHVFVGDLSPE----------ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp --CEEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCceEEEEeCCCCC----------CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34679999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
+|+.|.|+++.++
T Consensus 74 ~g~~l~v~~a~~k 86 (87)
T 3bs9_A 74 GGRQIRTNWATRK 86 (87)
T ss_dssp TTEECEEEEEC--
T ss_pred CCeEEEEEecCCC
Confidence 9999999999864
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-20 Score=133.99 Aligned_cols=85 Identities=24% Similarity=0.446 Sum_probs=79.5
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..
T Consensus 14 ~~~~~~l~v~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 14 SLEKHKLFISGLPFS----------CTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT 82 (100)
T ss_dssp CCCCSCEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE
Confidence 355789999999999 9999999999999999999999987 88999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.++..
T Consensus 83 ~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 83 IKENIIKVAISNSGPS 98 (100)
T ss_dssp SSSCEEEEEECCCCSC
T ss_pred ECCEEEEEEECCCCCC
Confidence 9999999999987653
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=134.31 Aligned_cols=83 Identities=30% Similarity=0.401 Sum_probs=78.6
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..
T Consensus 12 ~~~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLY----------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp CCGGGCEEEESCCSS----------CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEECCCCC----------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 355789999999999 9999999999999999999999998889999999999999999999999999999
Q ss_pred ecCeEEEEEEecc
Q 027685 114 LLGRELTVVFAEE 126 (220)
Q Consensus 114 i~g~~l~v~~a~~ 126 (220)
|+|+.|.|++++.
T Consensus 82 ~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 82 LDGRRIRVSGPSS 94 (95)
T ss_dssp ETTEEEEEECCSC
T ss_pred ECCEEEEEEecCC
Confidence 9999999999864
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=3.2e-20 Score=138.07 Aligned_cols=86 Identities=24% Similarity=0.347 Sum_probs=80.9
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..++|||+|||++ +++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..
T Consensus 22 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 91 (115)
T 2cpz_A 22 GPEGANLFIYHLPQE----------FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 91 (115)
T ss_dssp CSTTCCEEEESCCSS----------CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE
Confidence 345789999999999 9999999999999999999999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.++..
T Consensus 92 ~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 92 IGMKRLKVQLKRSKND 107 (115)
T ss_dssp ETTEECEEECCCCSCC
T ss_pred ECCEEEEEEEcCCCCc
Confidence 9999999999987654
No 22
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.3e-20 Score=132.41 Aligned_cols=82 Identities=34% Similarity=0.500 Sum_probs=78.0
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.|||..
T Consensus 4 ~~~~~~l~V~nl~~~----------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEE----------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp CCCSSEEEEECCCTT----------CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCC----------CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 356789999999999 9999999999999999999999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEec
Q 027685 114 LLGRELTVVFAE 125 (220)
Q Consensus 114 i~g~~l~v~~a~ 125 (220)
|+|+.|.|++|+
T Consensus 74 ~~g~~l~v~~ak 85 (85)
T 3mdf_A 74 LFGRTIRVNLAK 85 (85)
T ss_dssp ETTEECEEEECC
T ss_pred ECCcEEEEEEcC
Confidence 999999999974
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=136.59 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=81.4
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC--
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-- 110 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~-- 110 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||
T Consensus 11 ~~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~ 80 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFD----------SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLE 80 (111)
T ss_dssp CCCCCCCEEEESCCTT----------CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTT
T ss_pred cCCCCCEEEEECCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccc
Confidence 3456789999999999 9999999999999999999999999899999999999999999999999999
Q ss_pred ----CceecCeEEEEEEeccCCC
Q 027685 111 ----GYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 111 ----g~~i~g~~l~v~~a~~~~~ 129 (220)
+..|+|+.|.|.++.++..
T Consensus 81 ~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 81 AEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp TTTCCEESSSCEEEEECCCCCCC
T ss_pred cccCCcEEcCEEEEEEECCCCcc
Confidence 9999999999999987644
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=135.20 Aligned_cols=85 Identities=24% Similarity=0.390 Sum_probs=80.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEE-EecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|||+|||+. +++++|.++|.+||.|..| .|+.+..++.++|||||+|.+.++|++||+.|||..
T Consensus 3 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 3 SGSSGIFIGNLDPE----------IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp SCCCEEEEECCCTT----------CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 35789999999999 9999999999999999999 999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.++..
T Consensus 73 ~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 73 LCNRPITVSYAFKKDS 88 (96)
T ss_dssp ETTEECEEEESCCCCC
T ss_pred ECCEEEEEEEecccCC
Confidence 9999999999987654
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=134.92 Aligned_cols=85 Identities=29% Similarity=0.531 Sum_probs=79.3
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||+. +++++|+++|.+||.|..|.|+.+ ++..++||||+|.+.++|++||+.||+..
T Consensus 12 ~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDG----------IDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp CSSCCCEEEECCCTT----------CCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 356889999999999 999999999999999999999987 78899999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCCC
Q 027685 114 LLGRELTVVFAEENRKK 130 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~~ 130 (220)
|.|+.|.|+++.++...
T Consensus 80 ~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 80 VATKPLYVALAQRKEER 96 (103)
T ss_dssp SSSSBCEEEECSSCCCC
T ss_pred eCCcEEEEEEecccccC
Confidence 99999999999876543
No 26
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=135.45 Aligned_cols=86 Identities=28% Similarity=0.366 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 32 RGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 32 ~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
......++|||+|||+. +++++|+++|.+||.|..|.|+.+..++..++||||+|.+.++|++||+.|++
T Consensus 12 ~~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYH----------TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp CCSCSSSEEEEECCCSS----------CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred cCCCCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 34456889999999999 99999999999999999999999988999999999999999999999999998
Q ss_pred ceecCeEEEEEEeccCC
Q 027685 112 YLLLGRELTVVFAEENR 128 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~~ 128 (220)
.|.|+.|.|+++....
T Consensus 82 -~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 82 -IIDGRKANVNLAYLGA 97 (116)
T ss_dssp -EETTEECEEEESTTTC
T ss_pred -cCCCEEEEEEEcccCC
Confidence 8999999999997653
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3.3e-20 Score=133.70 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=80.3
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
+.++|||+|||.. +++++|.++|++||.|..|.|+.+..+|..+|||||+|.+.++|++||+.|||..|+
T Consensus 1 P~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSIPYD----------QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCC----------CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3679999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCCC
Q 027685 116 GRELTVVFAEENRKK 130 (220)
Q Consensus 116 g~~l~v~~a~~~~~~ 130 (220)
|+.|.|+++.+....
T Consensus 71 g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 71 SRFLKCGYSSNSDIS 85 (96)
T ss_dssp TEECEEEECSCSSGG
T ss_pred CeEEEEEEcCCCCCC
Confidence 999999999876543
No 28
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=135.08 Aligned_cols=87 Identities=33% Similarity=0.595 Sum_probs=81.1
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEeccc-CCCCCcceEEEEEeCCHHHHHHHHHhh-C
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRD-YYTGEPRGFGFVQYIDPADAADAKYHM-D 110 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~a~~Al~~l-~ 110 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|++||..| |
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 80 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQ----------ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH 80 (107)
T ss_dssp CSSCCCCEEEESCCTT----------CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCc----------CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc
Confidence 3456789999999999 999999999999999999999998 788999999999999999999999999 9
Q ss_pred CceecCeEEEEEEeccCCC
Q 027685 111 GYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~~~ 129 (220)
+..|.|+.|.|+++.+...
T Consensus 81 ~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 81 STHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CCBSSSCBCEEEECCCCCC
T ss_pred CCeECCCEEEEEeCCCCCC
Confidence 9999999999999987654
No 29
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=1.1e-20 Score=141.08 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=62.6
Q ss_pred CCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 31 GRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 31 ~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
+......++|||+|||++ +++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.||
T Consensus 10 pp~~r~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 10 PPSRRSENRVVVSGLPPS----------GSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp -------CCEEEEECCSS----------CCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhC
Confidence 333345789999999999 999999999999999999999854 899999999999999999999
Q ss_pred CceecCeEEE
Q 027685 111 GYLLLGRELT 120 (220)
Q Consensus 111 g~~i~g~~l~ 120 (220)
|.+|+|+.|+
T Consensus 73 g~~~~gr~~~ 82 (115)
T 3beg_B 73 NTKFRSHEGE 82 (115)
T ss_dssp TCBCCCTTSC
T ss_pred CCEECCcEee
Confidence 9999999833
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.8e-20 Score=141.51 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=80.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|
T Consensus 20 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 20 VEGWILFVTGVHEE----------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp SSSEEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 44679999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCC
Q 027685 115 LGRELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~ 130 (220)
+|+.|.|+||.++...
T Consensus 90 ~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 90 MGQPISVDWCFVRGPP 105 (126)
T ss_dssp SSSBCEEEESEESSSC
T ss_pred CCeEEEEEEecCCCCC
Confidence 9999999999876543
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=138.77 Aligned_cols=85 Identities=31% Similarity=0.565 Sum_probs=79.7
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..++|||+|||++ +++++|+++|++||.|..|.|+.+. ++..+|||||+|.+.++|++||+.|||..
T Consensus 4 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 72 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRE----------TNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKS 72 (116)
T ss_dssp TCSCCEEEEECCTTT----------CCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCB
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 456889999999999 9999999999999999999999987 88999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++++...
T Consensus 73 ~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 73 LHGKAIKVEQAKKPSF 88 (116)
T ss_dssp CSSSBCEEEECCCSSC
T ss_pred ECCEEEEEEECCCCCC
Confidence 9999999999986543
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=137.29 Aligned_cols=87 Identities=30% Similarity=0.371 Sum_probs=81.0
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE--------EEEecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK--------DIYLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
.....++|||+|||+. +++++|+++|.+||.|. .|.|+.+..++.++|||||+|.+.++|++
T Consensus 11 ~~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 80 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDS----------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKA 80 (113)
T ss_dssp CCCCCCEEEEECCCTT----------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHH
T ss_pred cCCCCCEEEEcCCCCC----------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHH
Confidence 3456889999999999 99999999999999999 69999998899999999999999999999
Q ss_pred HHHhhCCceecCeEEEEEEeccCCC
Q 027685 105 AKYHMDGYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 105 Al~~l~g~~i~g~~l~v~~a~~~~~ 129 (220)
||+.|||..|.|+.|.|+++.++..
T Consensus 81 Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 81 AVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp HHHHHTTCEETTEECEEECSSCCCC
T ss_pred HHHHcCCCccCCCEEEEEECCCCCC
Confidence 9999999999999999999987654
No 33
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=3.6e-20 Score=145.00 Aligned_cols=85 Identities=26% Similarity=0.331 Sum_probs=80.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||+|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|
T Consensus 37 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 106 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFY----------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106 (156)
T ss_dssp TTCCEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45789999999999 99999999999999999999999998999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|+||.+...
T Consensus 107 ~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 107 DDRIIRTDWDAGFKE 121 (156)
T ss_dssp TTEECEEEEESCCCT
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999987543
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=132.18 Aligned_cols=86 Identities=33% Similarity=0.533 Sum_probs=78.4
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+.. .+++||||+|.+.++|++||..||+.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFR----------FRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CSCCCCEEEEESCCTT----------CCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3455789999999999 99999999999999999999998753 37899999999999999999999999
Q ss_pred eecCeEEEEEEeccCCCC
Q 027685 113 LLLGRELTVVFAEENRKK 130 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~ 130 (220)
.|+|+.|.|+++.++...
T Consensus 79 ~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 79 VVEGRKIEVNNATARVMT 96 (103)
T ss_dssp EETTEECEEEECCSSCCC
T ss_pred EECCEEEEEEEcccCCCC
Confidence 999999999999876544
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=7.6e-20 Score=133.68 Aligned_cols=85 Identities=24% Similarity=0.376 Sum_probs=79.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|
T Consensus 13 ~~~~~l~v~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQ----------QSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 45889999999999 9999999999999999999999887 788999999999999999999999999999
Q ss_pred cC---eEEEEEEeccCCCC
Q 027685 115 LG---RELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g---~~l~v~~a~~~~~~ 130 (220)
.| +.|.|+++.+....
T Consensus 82 ~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 82 MPGASSSLVVKFADTDKES 100 (105)
T ss_dssp CTTCSSCCEEEESCSSCCC
T ss_pred CCCCCccEEEEECccCccc
Confidence 98 99999999876543
No 36
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=4.2e-20 Score=135.52 Aligned_cols=84 Identities=30% Similarity=0.426 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 31 GRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 31 ~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
+......++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||
T Consensus 23 ~~~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFG----------VSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp -CCCCCSEEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 334566889999999999 9999999999999999999999988 89999999999999999999999999
Q ss_pred CceecCeEEEEEEec
Q 027685 111 GYLLLGRELTVVFAE 125 (220)
Q Consensus 111 g~~i~g~~l~v~~a~ 125 (220)
|..|+|+.|.|++|.
T Consensus 92 g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 92 GVPLDGRPMNIQLVT 106 (107)
T ss_dssp TCEETTEECEEEEEC
T ss_pred CCEeCCcEEEEEEeC
Confidence 999999999999986
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-20 Score=133.70 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=78.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCC-CCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|||+|||++ +++++|+++|.+|| |..|.|+.+..+ +.++|||||+|.+.++|++|| .||+..
T Consensus 13 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 13 SPPYTAFLGNLPYD----------VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 80 (104)
T ss_dssp SSCEEEEEESCCSS----------CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE
T ss_pred CCCCEEEEeCCCCc----------CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 45789999999999 99999999999999 999999999877 899999999999999999999 999999
Q ss_pred ecCeEEEEEEeccCCCC
Q 027685 114 LLGRELTVVFAEENRKK 130 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~~ 130 (220)
|+|+.|.|+++.++...
T Consensus 81 ~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 81 LGNKRIRVDVADQAQDK 97 (104)
T ss_dssp ETTEECEEEECCCCCCC
T ss_pred eCCcEEEEEEccCCCCC
Confidence 99999999999876543
No 38
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=134.39 Aligned_cols=86 Identities=24% Similarity=0.346 Sum_probs=79.2
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++..++||||+|.+.++|++||+.||+.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 11 AGRLGSTVFVANLDYK----------VGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCCCCSCEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456789999999999 9999999999999999999999887 5889999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.....
T Consensus 80 ~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 80 LLFDRPMHVKMDERALP 96 (114)
T ss_dssp EETTEECEEEECSCCCC
T ss_pred EeCCCEEEEEEcccCCC
Confidence 99999999999876543
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=134.12 Aligned_cols=85 Identities=28% Similarity=0.478 Sum_probs=78.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCC---CCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYY---TGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
...++|||+|||++ +++++|+++|++||.|..|.|+.+.. ++..++||||+|.+.++|++||+.|||
T Consensus 3 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g 72 (98)
T 2cpf_A 3 SGSSGLFIKNLNFS----------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG 72 (98)
T ss_dssp CCCCCEEEESCCTT----------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC
Confidence 45789999999999 99999999999999999999998765 558899999999999999999999999
Q ss_pred ceecCeEEEEEEeccCCC
Q 027685 112 YLLLGRELTVVFAEENRK 129 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~~~ 129 (220)
..|+|+.|.|+++.+...
T Consensus 73 ~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 73 HTVDGHKLEVRISERATK 90 (98)
T ss_dssp CEETTEECEEECSSCSSC
T ss_pred CeeCCeEEEEEEccCCCC
Confidence 999999999999987654
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=136.05 Aligned_cols=84 Identities=25% Similarity=0.387 Sum_probs=79.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|
T Consensus 21 ~~~~~l~V~nlp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 21 VEGWILFVTGVHEE----------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp TTBEEEEEECCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 44678999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|++|.++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 91 MGQPISVDWCFVRG 104 (106)
T ss_dssp SSSBCEEEESEESS
T ss_pred CCcEEEEEeecCCC
Confidence 99999999998754
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=130.78 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=77.3
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCC-cceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGE-PRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.+++|||+|||++ +++++|.++|.+||.|..|.|+.+..++. .+|||||+|.+.++|++||+.|||..|
T Consensus 3 ~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 3 KPTKVHIGRLTRN----------VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp CCCEEEEECCCTT----------CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 3689999999999 99999999999999999999998876655 899999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|+++.+..
T Consensus 73 ~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 73 DGQEITATAVLAPW 86 (88)
T ss_dssp TTEECEEEEECCCC
T ss_pred CCeEEEEEECCCCC
Confidence 99999999997654
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=134.16 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=80.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE-EEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK-DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
....++|||+|||++ +++++|+++|.+||.|. .|.|+.+..++.++|||||+|.+.++|++||+.|||.
T Consensus 6 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 6 SGMAASLWMGDLEPY----------MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp CSSSSEEEECSCCTT----------CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CCCccEEEEeCCCCC----------CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 356899999999999 99999999999999999 9999999889999999999999999999999999999
Q ss_pred eecCeE----EEEEEeccCC
Q 027685 113 LLLGRE----LTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~----l~v~~a~~~~ 128 (220)
.|.|.. |.|+||.+..
T Consensus 76 ~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 76 PLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EESSCSSCEECCEEETTCCS
T ss_pred ccCCCCcceeEEEeecCCCC
Confidence 999999 9999998654
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3e-20 Score=141.74 Aligned_cols=86 Identities=31% Similarity=0.440 Sum_probs=81.0
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..++.++|||+|||++ +++++|+++|.+||+|..|.|+.+..++..+|||||+|.+.++|++||+.|||.
T Consensus 42 ~~~~~~~l~V~nLp~~----------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLY----------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CCCCSSCBCEETCTTS----------CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456789999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|+|+.|.|+|+.++.
T Consensus 112 ~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 112 ELDGRRIRVDFSITKR 127 (129)
T ss_dssp CSSSSCCEESCCSSSS
T ss_pred EECCEEEEEEEecCCC
Confidence 9999999999998764
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=5.3e-20 Score=135.72 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|
T Consensus 24 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 24 VEGWILFVTSIHEE----------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp TTBEEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45689999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|+++.++.
T Consensus 94 ~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 94 MGQTIQVDWCFVKG 107 (110)
T ss_dssp TTEECEEEESEESS
T ss_pred CCcEEEEEEcccCC
Confidence 99999999998754
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=132.38 Aligned_cols=83 Identities=28% Similarity=0.415 Sum_probs=78.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+|| |..|.|+.+..++.++|||||+|.+.++|++|| .||+..|
T Consensus 13 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 80 (103)
T 2dng_A 13 EPPYTAYVGNLPFN----------TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL 80 (103)
T ss_dssp SSCEEEEEESCCTT----------CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCeEEEEeCCCCC----------CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE
Confidence 45789999999999 99999999999997 999999999989999999999999999999999 8999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|+.|.|+++.+...
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 81 GDRSLRVDIAEGRKQ 95 (103)
T ss_dssp TTEECEEEECCCCCC
T ss_pred CCeEEEEEEecCCCC
Confidence 999999999987543
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=5.3e-20 Score=131.29 Aligned_cols=85 Identities=27% Similarity=0.411 Sum_probs=78.5
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+ ++..++||||+|.+.++|++||+.||+.
T Consensus 4 ~~~~~~~l~V~nlp~~----------~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFD----------FTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp SSSSCCEEEECSCCTT----------CCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456889999999999 999999999999999999999874 7888999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.+...
T Consensus 72 ~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 72 KLSGREIDVRIDRNASG 88 (92)
T ss_dssp CBTTBCCCCEECSCCSS
T ss_pred EECCcEEEEEEcCCCCC
Confidence 99999999999987654
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=9e-21 Score=138.18 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCCCeEEEccCCC------CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 35 DLPTSLLVRNLRH------DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 35 ~~~~~l~V~~Lp~------~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
...++|||+|||+ + +++++|.++|++||.|..|.|+.+..||.++|||||+|.+.++|++||+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~----------~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVP----------VLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHH----------HHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CcCcEEEEeCCCcCChHHHH----------HHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4478999999999 9 99999999999999999999999999999999999999999999999999
Q ss_pred hCCceecC-eEEEEEEeccC
Q 027685 109 MDGYLLLG-RELTVVFAEEN 127 (220)
Q Consensus 109 l~g~~i~g-~~l~v~~a~~~ 127 (220)
|||..|.| +.|.|.+|.+.
T Consensus 74 lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 74 FHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HTTCBSSSSCBCEEEESHHH
T ss_pred hCCcccCCCeEEEEEECchh
Confidence 99999999 99999999764
No 48
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-20 Score=141.42 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=75.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|++||. ||+..|
T Consensus 23 ~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 91 (124)
T 1wel_A 23 EAGFCVYLKGLPFE----------AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM 91 (124)
T ss_dssp CCCCEEEEECCCTT----------CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 45789999999999 9999999999999999886666666789999999999999999999998 999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
+|+.|.|.++.++
T Consensus 92 ~gr~i~V~~a~~~ 104 (124)
T 1wel_A 92 GNRFIQVHPITKK 104 (124)
T ss_dssp TTSCBEEEEECHH
T ss_pred CCcEEEEEECCHH
Confidence 9999999999764
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=5.9e-20 Score=137.12 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=74.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|.++|.+||.|..|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|
T Consensus 5 ~~~lfV~nLp~~----------~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 5 SGNIFIKNLDKS----------IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CCEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCEEEECCCCCC----------CCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578999999999 9999999999999999999999874 3468999999999999999999999999999
Q ss_pred eEEEEEEeccCCC
Q 027685 117 RELTVVFAEENRK 129 (220)
Q Consensus 117 ~~l~v~~a~~~~~ 129 (220)
+.|.|+++.++..
T Consensus 73 ~~i~V~~a~~~~~ 85 (115)
T 4f25_A 73 RKVFVGRFKSRKE 85 (115)
T ss_dssp EECEEEESSCCCC
T ss_pred EEEEEEECCCccc
Confidence 9999999886544
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=7.8e-21 Score=135.66 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=72.7
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC--ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
.+|||+|||++ +++++|+++|++|| .|..|.|+.+..+|.++|||||+|.+.++|++||+.|||..|+
T Consensus 2 ~~l~V~nL~~~----------~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWW----------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTT----------CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCC----------CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 48999999999 99999999999999 9999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCCC
Q 027685 116 GRELTVVFAEENRKK 130 (220)
Q Consensus 116 g~~l~v~~a~~~~~~ 130 (220)
|+.|.|.++.+....
T Consensus 72 gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 72 GQNPVVTPSNKLEHH 86 (90)
T ss_dssp SCCCEECCC------
T ss_pred CEEEEEEECCCCccc
Confidence 999999999876543
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=7.8e-20 Score=140.24 Aligned_cols=88 Identities=24% Similarity=0.470 Sum_probs=81.8
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||.+ +++++|+++|..||+|..|.|+.+..++..+|||||+|.+.++|++||+.|||.
T Consensus 38 ~~~~~~~l~V~nLp~~----------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTT----------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp CTTTTSEEEEESCSTT----------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3455789999999999 999999999999999999999999888999999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCCC
Q 027685 113 LLLGRELTVVFAEENRKK 130 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~ 130 (220)
.|+|+.|.|+++.+....
T Consensus 108 ~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 108 NILNKRLKVALAASGHQR 125 (139)
T ss_dssp ECSSCEEEEEESSCCCCC
T ss_pred EECCeEEEEEECCCCCCC
Confidence 999999999999876543
No 52
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.9e-19 Score=131.49 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=73.9
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||++ +++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~~~l~V~nl~~~----------~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANT----------VTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCCCCCCEEEECCCTT----------CCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC
Confidence 3456789999999999 9999999999999999999987 459999999999999999999999
Q ss_pred eecCeEEEEEEeccCCCCC
Q 027685 113 LLLGRELTVVFAEENRKKP 131 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~~ 131 (220)
.|.|+.|.|+++.+.....
T Consensus 69 ~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 69 DLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp EETTEEEEEEECCCCCCCC
T ss_pred ccCCCEEEEEEcCCCcccc
Confidence 9999999999998765543
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=133.38 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=78.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..+..++|||+|||+. +++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+.|||.
T Consensus 11 ~~~~~~~l~v~nLp~~----------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFT----------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CCCSSEEEEEESCCTT----------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3455789999999999 999999999999999998888888888999999999999999999999999999
Q ss_pred eecCeEEEEEEeccC
Q 027685 113 LLLGRELTVVFAEEN 127 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~ 127 (220)
.|+|+.|.|+++...
T Consensus 81 ~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 81 PIGSRKVKLVLGSGP 95 (98)
T ss_dssp EETTEECEEEESSCS
T ss_pred eeCCeEEEEEEcCCC
Confidence 999999999998754
No 54
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=5.2e-20 Score=134.79 Aligned_cols=86 Identities=20% Similarity=0.405 Sum_probs=80.3
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||.. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..
T Consensus 10 ~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRN----------LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQK 79 (106)
T ss_dssp CTTCEEEEEESCCTT----------CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCc
Confidence 355789999999999 9999999999999999999999998899999999999999999999999999998
Q ss_pred e---cCeEEEEEEeccCCC
Q 027685 114 L---LGRELTVVFAEENRK 129 (220)
Q Consensus 114 i---~g~~l~v~~a~~~~~ 129 (220)
| .|+.|.|+++.+...
T Consensus 80 ~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 80 TLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCTTCSSCCEEEECCCCSC
T ss_pred ccCCCCceEEEEECCcccc
Confidence 7 899999999987653
No 55
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=132.11 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=77.3
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||+|..|.|+.+.. +.++|||||+|.+.++|++||+.||+.
T Consensus 12 ~~~~~~~l~v~nlp~~----------~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 12 QEEADRTVFVGNLEAR----------VREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp CTTGGGEEEEECCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCCCC----------CCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456789999999999 99999999999999999999998875 889999999999999999999999999
Q ss_pred eecCeEEEEEEecc
Q 027685 113 LLLGRELTVVFAEE 126 (220)
Q Consensus 113 ~i~g~~l~v~~a~~ 126 (220)
.|+|+.|.|+++..
T Consensus 81 ~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 81 RLYGRPINVSGPSS 94 (95)
T ss_dssp EETTEECEEECCCC
T ss_pred EECCCEEEEEEcCC
Confidence 99999999999863
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=132.37 Aligned_cols=81 Identities=30% Similarity=0.384 Sum_probs=77.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE--------EEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
...++|||+|||++ +++++|+++|.+||.|.. |.|+.+..+|..+|||||+|.+.++|++||
T Consensus 11 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 11 SDNNTIFVQGLGEN----------VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp CCCSEEEEECCCSS----------CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHH
Confidence 55789999999999 999999999999999999 999999889999999999999999999999
Q ss_pred HhhCCceecCeEEEEEEec
Q 027685 107 YHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 107 ~~l~g~~i~g~~l~v~~a~ 125 (220)
+.|||..|.|+.|.|++|+
T Consensus 81 ~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 81 DWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHTTCBSSSSBCEEEECC
T ss_pred HHhCCCEeCCcEEEEEecC
Confidence 9999999999999999974
No 57
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=2e-20 Score=134.28 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
+.+.+++|||+|||++ +++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+.||+.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFT----------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp ----CEEEEEECCCTT----------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3455789999999999 999999999999999998888888888999999999999999999999999999
Q ss_pred eecCeEEEEEEecc
Q 027685 113 LLLGRELTVVFAEE 126 (220)
Q Consensus 113 ~i~g~~l~v~~a~~ 126 (220)
.|+|+.|.|+++..
T Consensus 81 ~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 81 PIGSRKVKLSGPSS 94 (95)
T ss_dssp EETTEECEEECCC-
T ss_pred eECCcEEEEEeccC
Confidence 99999999998763
No 58
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=130.75 Aligned_cols=85 Identities=27% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+..+ .++||||+|.+.++|++||+.||+.
T Consensus 11 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRD----------VTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CSCCCCEEEEESCCTT----------CCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCcc----------CCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456889999999999 999999999999999999999987543 5899999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|.|+.|.|+++.+...
T Consensus 79 ~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 79 KILGKEVKVNWATTPSS 95 (103)
T ss_dssp EETTEEEEEEECCCTTC
T ss_pred CcCCCeEEEEECCCCcc
Confidence 99999999999987554
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6e-20 Score=134.34 Aligned_cols=87 Identities=29% Similarity=0.404 Sum_probs=80.9
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..+..++|||+|||+. +++++|+++|.+||+|..|.|+.+..++..+|||||+|.+.++|++||.. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWS----------TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH 80 (105)
T ss_dssp CSSSSSEECCBSCCTT----------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC
Confidence 4466889999999999 99999999999999999999999988999999999999999999999988 999
Q ss_pred eecCeEEEEEEeccCCCC
Q 027685 113 LLLGRELTVVFAEENRKK 130 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~ 130 (220)
.|+|+.|.|+++.++...
T Consensus 81 ~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 81 TLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EETTEEEBCCCSCCSSCC
T ss_pred eECCEEEEEEEccCCCCC
Confidence 999999999999876543
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.3e-19 Score=135.31 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=77.4
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.|||..
T Consensus 37 ~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 37 GPEGCNLFIYHLPQE----------FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCSEEEEEECSCTT----------CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 355789999999999 9999999999999999999999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEec
Q 027685 114 LLGRELTVVFAE 125 (220)
Q Consensus 114 i~g~~l~v~~a~ 125 (220)
|+|+.|+|+|++
T Consensus 107 ~~g~~l~V~~ak 118 (118)
T 2khc_A 107 VGTKRLKVQLKK 118 (118)
T ss_dssp ETTEECCEEEC-
T ss_pred ECCEEEEEEecC
Confidence 999999999974
No 61
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=135.17 Aligned_cols=84 Identities=33% Similarity=0.554 Sum_probs=79.6
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...+++|||+|||.. +++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..
T Consensus 23 ~~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFN----------ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp CSSCEEEEEECCCSS----------CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 355789999999999 9999999999999999999999998899999999999999999999999999999
Q ss_pred ecCeEEEEEEeccC
Q 027685 114 LLGRELTVVFAEEN 127 (220)
Q Consensus 114 i~g~~l~v~~a~~~ 127 (220)
|+|+.|.|+++.++
T Consensus 93 i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 93 LAGRPMKVGHVTER 106 (108)
T ss_dssp SSSSCCEEECSCSS
T ss_pred ECCEEEEEEEcccC
Confidence 99999999998865
No 62
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=130.64 Aligned_cols=84 Identities=35% Similarity=0.529 Sum_probs=76.2
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||++ +++++|+++|.+||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+.
T Consensus 18 ~~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPD----------IRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CCCCSSEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 3455789999999999 999999999999999999999753 467899999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++++...
T Consensus 85 ~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 85 DYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp EETTEECEEECCCCCCC
T ss_pred EECCeEEEEEEcccCCC
Confidence 99999999999987653
No 63
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.5e-19 Score=128.05 Aligned_cols=80 Identities=24% Similarity=0.502 Sum_probs=76.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .|||..|.|
T Consensus 6 ~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 6 ARSIYVGNVDYG----------ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HTEEEEESCCTT----------CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 579999999999 999999999999999999999999889999999999999999999999 999999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|+++.+.
T Consensus 75 ~~l~V~~a~~~ 85 (89)
T 3ucg_A 75 RQIKVIPKRTN 85 (89)
T ss_dssp EECEEEETTTT
T ss_pred cEEEEEEccCC
Confidence 99999998764
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.4e-19 Score=143.13 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=79.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||..|||..|
T Consensus 70 ~~~~~l~V~nLp~~----------~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 70 VEGWILFVTSIHEE----------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp C-CEEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 44678999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|+.|.|.|+.++..
T Consensus 140 ~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 140 MGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTEECEEEESEECC-
T ss_pred CCEEEEEEEecCCCC
Confidence 999999999987643
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=132.35 Aligned_cols=85 Identities=22% Similarity=0.281 Sum_probs=79.3
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC-CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
....++|||+|||++ +++++|+++|.+ ||.|..|.|+.+. ++..+|||||+|.+.++|++||+.||+.
T Consensus 6 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPD----------VDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp SSCCCCEEEECCCTT----------CCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCcEEEEeCCCCC----------CCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC
Confidence 355789999999999 999999999999 9999999999998 8999999999999999999999999999
Q ss_pred e-ecCeEEEEEEeccCCC
Q 027685 113 L-LLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~-i~g~~l~v~~a~~~~~ 129 (220)
. |+|+.|.|+++.+...
T Consensus 75 ~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 75 VGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp CSSSSSCCCCCBCCCCCS
T ss_pred cccCCEeEEEEEccCCCc
Confidence 9 9999999999976543
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=135.03 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=77.8
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||+. +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++|| .|||..|+
T Consensus 24 ~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 24 DARTVFCMQLAAR----------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp HHTEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 3689999999999 999999999999999999999999988999999999999999999999 99999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|+++.+..
T Consensus 93 g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 93 GVPIIVQASQAEK 105 (114)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CeEEEEEecCCCc
Confidence 9999999997643
No 67
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=129.50 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=75.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHH----HHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
...++|||+|||+. +++++|+ ++|.+||.|..|.|+.+..+ ++||||+|.+.++|++||+.||
T Consensus 7 ~~~~~l~V~nL~~~----------~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 7 GNGADVQVSNIDYR----------LSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp SSCEEEEEESCCTT----------SCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCC----------CCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhC
Confidence 34679999999999 9999999 99999999999999988655 7899999999999999999999
Q ss_pred CceecCeEEEEEEeccCCC
Q 027685 111 GYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~~~ 129 (220)
|..|+|+.|.|++|.+...
T Consensus 74 g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 74 RYKIGSKKILVSLATGASG 92 (96)
T ss_dssp TEEETTEEEEEEECCCSSC
T ss_pred CCEECCeEEEEEEcCCCCC
Confidence 9999999999999987653
No 68
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=3e-19 Score=143.36 Aligned_cols=86 Identities=28% Similarity=0.388 Sum_probs=79.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||.
T Consensus 84 ~~~~~~~l~V~nLp~~----------~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFG----------VSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp SCTTCEEEEEECCCSC----------CCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 3355789999999999 9999999999999999999999987 8899999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|+|+||.....
T Consensus 153 ~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 153 PLDGRPMDIQLVASQID 169 (177)
T ss_dssp BCSSSBCEEEEESSGGG
T ss_pred EECCEEEEEEEecCCCC
Confidence 99999999999986543
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=3.6e-19 Score=134.17 Aligned_cols=88 Identities=27% Similarity=0.370 Sum_probs=81.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++..+|||||+|.+.++|++||+.|||.
T Consensus 31 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFG----------VSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CCSSCEEEEEESCCSS----------CCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 4466789999999999 9999999999999999999999987 8899999999999999999999999999
Q ss_pred eecCeEEEEEEeccCCCCC
Q 027685 113 LLLGRELTVVFAEENRKKP 131 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~~ 131 (220)
.|+|+.|.|++|......+
T Consensus 100 ~~~g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 100 PLDGRPMDIQLVASQIDLE 118 (124)
T ss_dssp ESSSCEEEEEEECCTTCCC
T ss_pred EECCcEEEEEEeCCCCCCC
Confidence 9999999999998766543
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=126.05 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=76.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+| .|..|.|+.+ .+|.++|||||+|.+.++|++||. ||+..|
T Consensus 8 ~~~~~l~v~nLp~~----------~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~ 74 (91)
T 2dgw_A 8 TTCHTVKLRGAPFN----------VTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM 74 (91)
T ss_dssp CCCCEEEEECCCSS----------CCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE
T ss_pred CCccEEEEECCCCC----------CCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee
Confidence 45789999999999 9999999999999 9999999988 789999999999999999999999 999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|.++.++.
T Consensus 75 ~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 75 GGRYIEVFREKSGP 88 (91)
T ss_dssp TTEEEEEEEESSCC
T ss_pred CCcEEEEEECCcCC
Confidence 99999999998764
No 71
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-19 Score=128.20 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=78.3
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||. +++
T Consensus 11 ~~~~~~~l~v~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~ 78 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWK----------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRH 78 (103)
T ss_dssp CCCCCCCEEEESCCSS----------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCE
T ss_pred ccCCCCEEEEEcCCCc----------CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCC
Confidence 3456789999999999 9999999999999999999999998899999999999999999999997 478
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.++..
T Consensus 79 ~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 79 MIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EETTEEEEEECCCTTCC
T ss_pred eeCCeEEEEEecCCCCc
Confidence 99999999999987654
No 72
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=136.14 Aligned_cols=82 Identities=34% Similarity=0.496 Sum_probs=77.2
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||.. +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.|||.
T Consensus 59 ~~~~~~~l~v~nlp~~----------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEE----------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp SCSSCCEEEEECCCTT----------CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CCCCCcEEEEEeCCCC----------CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3456889999999999 999999999999999999999999889999999999999999999999999999
Q ss_pred eecCeEEEEEEe
Q 027685 113 LLLGRELTVVFA 124 (220)
Q Consensus 113 ~i~g~~l~v~~a 124 (220)
.|+|+.|.|++|
T Consensus 129 ~~~g~~l~v~~A 140 (140)
T 2ku7_A 129 ELFGRTIRVNLA 140 (140)
T ss_dssp EETTEEEEEEC-
T ss_pred EECCEEEEEEeC
Confidence 999999999986
No 73
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=4.5e-19 Score=125.28 Aligned_cols=80 Identities=29% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||+. +++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+. ++..
T Consensus 8 ~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~ 76 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWD----------TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR 76 (87)
T ss_dssp CSCTTEEEEECCCTT----------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE
Confidence 356789999999999 99999999999999999999999988999999999999999999999954 8889
Q ss_pred ecCeEEEEEEe
Q 027685 114 LLGRELTVVFA 124 (220)
Q Consensus 114 i~g~~l~v~~a 124 (220)
|+|+.|.|++|
T Consensus 77 ~~g~~i~v~~A 87 (87)
T 3s7r_A 77 LDGRVIDPKKA 87 (87)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEEeC
Confidence 99999999886
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=141.73 Aligned_cols=83 Identities=13% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC--ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
..++|||+|||++ +++++|.++|.+|| .|..|.|+.|..+|.++|||||+|.+.++|++||..|||..
T Consensus 54 ~~~~lfVgnLp~~----------~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 54 RRAAVYVGSFSWW----------TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV 123 (156)
T ss_dssp --CEEEEECCCTT----------CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 4689999999999 99999999999999 99999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|+|+.|.|.+|.++.
T Consensus 124 ~~Gr~l~V~~a~~~~ 138 (156)
T 3n9u_C 124 LNGEKVDVRPATRQN 138 (156)
T ss_dssp ETTEECEEEECCHHH
T ss_pred ECCeEeEEEEcCCCc
Confidence 999999999997654
No 75
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=131.97 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=76.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHH---HHhcCCCceEEEEecccCCCC---CcceEEEEEeCCHHHHHHHHHh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLR---GPFGQFGRLKDIYLPRDYYTG---EPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~---~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~Al~~ 108 (220)
...++|||+|||++ +++++|. ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.
T Consensus 13 ~~~~~l~V~nLp~~----------~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 13 VQKNLVFVVGLSQR----------LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CCSSCEEEEEECTT----------TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCC----------CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 44789999999999 9999999 999999999999999887644 4569999999999999999999
Q ss_pred hCCceecCeEEEEEEeccCC
Q 027685 109 MDGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 109 l~g~~i~g~~l~v~~a~~~~ 128 (220)
|||..|+|+.|.|++|.++.
T Consensus 83 lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 83 VNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HTTEEETTEEEEEESCCCCS
T ss_pred hCCCEECCEEEEEEeccccc
Confidence 99999999999999998765
No 76
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.4e-19 Score=127.16 Aligned_cols=80 Identities=28% Similarity=0.381 Sum_probs=73.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
..++.++|||+|||++ +++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++||+.||+.
T Consensus 13 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 13 KANPTTRLWVGGLGPN----------TSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp CCCCCSCEEEECCCSS----------CCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC
Confidence 3456789999999999 999999999999999999999854 789999999999999999999999
Q ss_pred eec--CeEEEEEEeccCC
Q 027685 113 LLL--GRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~--g~~l~v~~a~~~~ 128 (220)
.|. |+.|.|+++.++.
T Consensus 77 ~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 77 PLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp BCSSSSCBCEEEECCCCC
T ss_pred EeCCCCcEEEEEECCCCC
Confidence 999 9999999998754
No 77
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=133.40 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC--
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-- 111 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g-- 111 (220)
....++|||+|||++ +++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++||+.|++
T Consensus 13 ~~~~~~LfV~nLp~~----------vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~ 76 (105)
T 1sjq_A 13 GVPSRVIHIRKLPID----------VTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVT 76 (105)
T ss_dssp CCCCCEEEECSCCTT----------SCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSC
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCC
Confidence 456889999999999 999999999999999999999865 79999999999999999998864
Q ss_pred ceecCeEEEEEEeccCCCCC
Q 027685 112 YLLLGRELTVVFAEENRKKP 131 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~~~~~ 131 (220)
..|.|++|.|+||+.+....
T Consensus 77 ~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 77 PVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp CEETTEECCBCCCSSSSCCC
T ss_pred ceECCEEEEEEEcCCCCCCc
Confidence 78999999999998765543
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=132.19 Aligned_cols=84 Identities=30% Similarity=0.478 Sum_probs=79.4
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|+
T Consensus 7 ~~~~l~V~nlp~~----------~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 7 SLRSVFVGNIPYE----------ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHSCEEEESCCTT----------SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CccEEEEeCCCCc----------CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 4689999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCC
Q 027685 116 GRELTVVFAEENRK 129 (220)
Q Consensus 116 g~~l~v~~a~~~~~ 129 (220)
|+.|.|+++.+...
T Consensus 77 g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 77 GRALRVDNAASEKN 90 (104)
T ss_dssp SSCBEEEETTCTTH
T ss_pred CcEEEEEeCCCccc
Confidence 99999999987654
No 79
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=8.3e-20 Score=139.22 Aligned_cols=85 Identities=21% Similarity=0.393 Sum_probs=79.2
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE--EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD--IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.....++|||+|||++ +++++|+++|.+||.|.. |.|+.+..+|.++|||||+|.+. +|++||..||
T Consensus 19 ~~~~~~~lfV~nL~~~----------~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 19 SENANDTIILRNLNPH----------STMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp CSCCCCEEEECSCCTT----------CCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 3456789999999999 999999999999999966 99999999999999999999999 9999999999
Q ss_pred Cc----eecCeEEEEEEeccCC
Q 027685 111 GY----LLLGRELTVVFAEENR 128 (220)
Q Consensus 111 g~----~i~g~~l~v~~a~~~~ 128 (220)
|. .|+|+.|.|+++.+..
T Consensus 88 g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 88 ALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp TCCCSCCGGGCCCCCEECCCSC
T ss_pred CCCCCccCCCEEEEEEECCCCC
Confidence 99 9999999999998754
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=5.1e-19 Score=130.86 Aligned_cols=85 Identities=28% Similarity=0.408 Sum_probs=76.6
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||..| +..
T Consensus 22 ~~~~~~lfV~nLp~~----------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~ 90 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQ----------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE 90 (109)
T ss_dssp ----CCEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc
Confidence 355789999999999 999999999999999999999999889999999999999999999999886 599
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.+...
T Consensus 91 l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 91 LDSKTIDPKVAFPRRA 106 (109)
T ss_dssp ETTEEEEEEECCCCCC
T ss_pred CCCEEEEEEEccCCCC
Confidence 9999999999987654
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=130.22 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=78.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc-eEEEEec-ccCCCCCcceEEEEEeCCHHHHHHHHHhhC--
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR-LKDIYLP-RDYYTGEPRGFGFVQYIDPADAADAKYHMD-- 110 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~a~~Al~~l~-- 110 (220)
...++|||+|||+. +++++|.++|.+||. |..|.|+ .+..++..+|||||+|.+.++|++||+.|+
T Consensus 6 ~~~~~l~V~nLp~~----------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g 75 (109)
T 2dis_A 6 SGNCRLFIGGIPKM----------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG 75 (109)
T ss_dssp CCSEEEEEECCCTT----------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTC
T ss_pred cCCCEEEEeCCCCc----------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCC
Confidence 34789999999999 999999999999998 9999998 788888999999999999999999999996
Q ss_pred CceecCeEEEEEEeccCCCC
Q 027685 111 GYLLLGRELTVVFAEENRKK 130 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~~~~ 130 (220)
+..|+|+.|.|+||.+....
T Consensus 76 ~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 76 RIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp CSCBTTBCCEEEESCSSCST
T ss_pred CceecCCeEEEEEcCCCCCc
Confidence 58999999999999876543
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=128.66 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=76.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE-EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD-IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
....++|||+|||++ +++++|+++|.+||.|.. |.|+.+ .++.++|||||+|.+.++|++||.. |+.
T Consensus 12 ~~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~ 79 (104)
T 1wg5_A 12 TANDGFVRLRGLPFG----------CSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE 79 (104)
T ss_dssp CSCCCEEEEESCCTT----------CCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc
Confidence 355789999999999 999999999999999987 888888 7899999999999999999999987 999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|+|+.|.|.++..+.
T Consensus 80 ~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 80 RIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CSSSSCCEEEEECTTT
T ss_pred hhCCcEEEEEECCHHH
Confidence 9999999999987543
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=125.39 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=72.6
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||+. +++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..
T Consensus 7 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 7 GKASTKLHVGNISPT----------CTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTE 68 (92)
T ss_dssp CCSSEEEEEESCCSS----------CCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCe
Confidence 355789999999999 9999999999999999999998 3499999999999999999999999
Q ss_pred ecCeEEEEEEeccCCCC
Q 027685 114 LLGRELTVVFAEENRKK 130 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~~ 130 (220)
|.|+.|.|+++.++...
T Consensus 69 ~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 69 FQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp ETTEEEEEEESSCCCSC
T ss_pred eCCcEEEEEEccCCCCC
Confidence 99999999999876543
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=131.74 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
....+|||+|||++ +|+++|.++|++||.|..|.|+.+.. +.++|||||+|.+.++|++||. |++..|
T Consensus 9 ~~~~~lfV~~Lp~~----------~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 9 VKNRSVYIKGFPTD----------ATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY 76 (103)
T ss_dssp SGGGCEEEECCCTT----------CCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC
T ss_pred CCCCEEEEECCCCC----------CCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE
Confidence 44689999999999 99999999999999999999999876 8999999999999999999998 899999
Q ss_pred cCeEEEEEEecc
Q 027685 115 LGRELTVVFAEE 126 (220)
Q Consensus 115 ~g~~l~v~~a~~ 126 (220)
+|+.|.|.++..
T Consensus 77 ~gr~l~V~~~~~ 88 (103)
T 1s79_A 77 KETDLLILFKDD 88 (103)
T ss_dssp TTTTCEEEEHHH
T ss_pred CCEEEEEEEchH
Confidence 999999999764
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=131.34 Aligned_cols=87 Identities=32% Similarity=0.539 Sum_probs=78.3
Q ss_pred CCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 29 YGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 29 ~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
.........++|||+|||.+ +++++|+++|++||.|..|.|+.+. +..+|||||+|.+.++|++||+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFR----------FRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTT----------CCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHH
T ss_pred CCccCCCCCCEEEEECCCCc----------CCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHH
Confidence 33445567899999999999 9999999999999999999999874 34789999999999999999999
Q ss_pred hCCceecCeEEEEEEeccC
Q 027685 109 MDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 109 l~g~~i~g~~l~v~~a~~~ 127 (220)
|||..|+|+.|.|+++.++
T Consensus 89 l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 89 LHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HTTCEETTEECEEEECCCS
T ss_pred cCCCEECCEEEEEEECCCC
Confidence 9999999999999999865
No 86
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=125.90 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=73.2
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||++ +++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+.
T Consensus 4 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPRE----------ATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp CSSCCEEEEEESCCSS----------CCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC
Confidence 3456789999999999 9999999999999999999997 579999999999999999999999
Q ss_pred eecCeEEEEEEeccCCC
Q 027685 113 LLLGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~ 129 (220)
.|+|+.|.|+++.++..
T Consensus 66 ~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 66 KLHGVNINVEASKNKSK 82 (90)
T ss_dssp BCSSCBCEEECSSCCCC
T ss_pred ccCCcEEEEEECCCCCC
Confidence 99999999999987654
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=126.16 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=73.4
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||+.||+..
T Consensus 12 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (101)
T 2fc9_A 12 SGESKTLVLSNLSYS----------ATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKRE 77 (101)
T ss_dssp SCCCSEEEEESCCTT----------CCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 355789999999999 9999999999999987 45555 578899999999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|.|+.|.|+++.++.
T Consensus 78 ~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 78 IEGRAIRLELQGPRG 92 (101)
T ss_dssp ETTEEEEEEECSSCC
T ss_pred eCCeEEEEEEcCCCC
Confidence 999999999998764
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=5.1e-19 Score=138.36 Aligned_cols=86 Identities=48% Similarity=0.719 Sum_probs=81.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||+.|||..|
T Consensus 68 ~~~~~l~v~nl~~~----------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 68 EGMTSLKVDNLTYR----------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp CBCCEEEEESCCTT----------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45789999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCC
Q 027685 115 LGRELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~ 130 (220)
.|+.|.|.++.+....
T Consensus 138 ~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 138 DGRELRVQMARYGRPP 153 (158)
T ss_dssp SSSEEEEEEECCSSCC
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999999876543
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7e-20 Score=128.89 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=75.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|
T Consensus 3 ~~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (85)
T 1x4e_A 3 SGSSGLYIRGLQPG----------TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV 72 (85)
T ss_dssp CCCCEEEEESCCTT----------CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE
Confidence 45789999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEe
Q 027685 115 LGRELTVVFA 124 (220)
Q Consensus 115 ~g~~l~v~~a 124 (220)
.|+.|+|.++
T Consensus 73 ~g~~~~~~~~ 82 (85)
T 1x4e_A 73 QAQMAKQSGP 82 (85)
T ss_dssp CEESCCSSCC
T ss_pred eeEEEeecCC
Confidence 9999887654
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=131.05 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=75.3
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccC-CCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDY-YTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
....++|||+|||++ +++++|+++|.+|| |..|.|+.+. .+|.++|||||+|.+.++|++|| .|||.
T Consensus 16 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 16 KSPPYTAFLGNLPYD----------VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ----CEEEESCCSSC----------CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCcEEEEeCCCCC----------CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 355889999999999 99999999999999 9999999987 68999999999999999999999 89999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|+|+.|.|+++.+..
T Consensus 84 ~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 84 SLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CBTTBCCCCEECCCSC
T ss_pred EECCeEEEEEeccCCC
Confidence 9999999999998653
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=131.67 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|
T Consensus 25 ~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 25 EQFRKLFIGGLSFE----------TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp HHHTEEEEECCTTC----------CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 34689999999999 99999999999999999999999988999999999999999999999987 99999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|+++.++..
T Consensus 94 ~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 94 DGRVVEPKRAVAREE 108 (116)
T ss_dssp TTEEEEEECCSSCCC
T ss_pred CCEEEEEEECCCCcc
Confidence 999999999987654
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=127.99 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=73.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh--CCc
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM--DGY 112 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l--~g~ 112 (220)
++.++|||+|||+. +++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.| ++.
T Consensus 13 ~p~~~l~V~nLp~~----------~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 76 (101)
T 2cq1_A 13 APSRVLHIRKLPGE----------VTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTP 76 (101)
T ss_dssp SCCSEEEEESCCTT----------CCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 45789999999999 999999999999999999998854 799999999999999999977 467
Q ss_pred eecCeEEEEEEeccCCCCC
Q 027685 113 LLLGRELTVVFAEENRKKP 131 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~~ 131 (220)
.|.|++|.|+|++.+....
T Consensus 77 ~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 77 HLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp EETTEECEEEECSCSSCCC
T ss_pred eECCcEEEEEEcCcccCcC
Confidence 8999999999998766543
No 93
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=131.68 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=77.0
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCce-EEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRL-KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
....++|||+|||++ +++++|+++|.+||.| ..|.|+.+. ++.++|||||+|.+.++|++||+. |+.
T Consensus 12 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~ 79 (114)
T 2cpy_A 12 NSAKVCAHITNIPFS----------ITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK 79 (114)
T ss_dssp CSCCCEEEEESCCTT----------SCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE
T ss_pred CCCccEEEEeCcCCc----------CCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC
Confidence 345789999999999 9999999999999999 889999998 899999999999999999999977 999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|+|+.|.|.++.++.
T Consensus 80 ~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 80 KLNGREAFVHVVTLED 95 (114)
T ss_dssp EETTEEEEEEEECHHH
T ss_pred ccCCeEEEEEECCHHH
Confidence 9999999999997654
No 94
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=6.4e-19 Score=132.55 Aligned_cols=81 Identities=23% Similarity=0.477 Sum_probs=77.1
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .|||..|+|
T Consensus 36 ~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 36 KRSVYVGNVDYG----------STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HTEEEEEEECTT----------CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 589999999999 999999999999999999999999889999999999999999999999 899999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|+++....
T Consensus 105 ~~l~V~~a~~~~ 116 (124)
T 2jwn_A 105 RTIKVLPKRTNM 116 (124)
T ss_dssp EECEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999999988643
No 95
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=131.40 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC--
Q 027685 35 DLPTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG-- 111 (220)
Q Consensus 35 ~~~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g-- 111 (220)
++.++|||+|||+ + +++++|+++|++||.|..|.|+.+ ++||||+|++.++|++||+.||+
T Consensus 13 ~p~~~l~V~nLp~~~----------~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGK----------NLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSS----------SHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCc----------CCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCC
Confidence 4578999999999 9 999999999999999999999865 58999999999999999999886
Q ss_pred ceecCeEEEEEEeccCC
Q 027685 112 YLLLGRELTVVFAEENR 128 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~~ 128 (220)
..|.|++|.|++|+...
T Consensus 77 ~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 77 ALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp CEETTEECEEEEECCCT
T ss_pred ceECCcEEEEEECCCCC
Confidence 45999999999998643
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=1.9e-19 Score=123.72 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=71.9
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
+|||+|||++ +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 1 ~l~v~nlp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVN----------TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CEEEECCCSS----------CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CEEEecCCCC----------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 5899999999 9999999999999999999999998889999999999999999999997 8999999999
Q ss_pred EEEEEe
Q 027685 119 LTVVFA 124 (220)
Q Consensus 119 l~v~~a 124 (220)
|.|++|
T Consensus 70 l~v~~A 75 (75)
T 2mss_A 70 VECKKA 75 (75)
T ss_dssp CEEECC
T ss_pred EEEEeC
Confidence 999875
No 97
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.7e-19 Score=138.56 Aligned_cols=86 Identities=48% Similarity=0.719 Sum_probs=80.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|
T Consensus 45 ~~~~~l~V~nLp~~----------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 45 EGMTSLKVDNLTYR----------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp GGCCCEEEECCCSS----------CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45789999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCC
Q 027685 115 LGRELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~ 130 (220)
+|+.|.|+++.+....
T Consensus 115 ~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 115 DGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSCCEEEECCCCCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876543
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=128.84 Aligned_cols=84 Identities=23% Similarity=0.390 Sum_probs=77.8
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+. ++..+|||||+|.+.++|++||..|||.
T Consensus 21 ~~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLS----------MDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp CCCCTTEEEEESCCTT----------CCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred cCCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456789999999999 9999999999999999999999987 8899999999999999999999999999
Q ss_pred ee--------cCeEEEEEEeccC
Q 027685 113 LL--------LGRELTVVFAEEN 127 (220)
Q Consensus 113 ~i--------~g~~l~v~~a~~~ 127 (220)
.| .+++|.|.||.+.
T Consensus 90 ~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 90 FIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEcCCccccCCCCceeEEccCCC
Confidence 99 5788999999854
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-19 Score=128.58 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=74.8
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +|+++|+++|.+||.| .|.|+.+. ++.++|||||+|.+.++|++|| .||+..
T Consensus 12 ~~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~ 78 (102)
T 1wez_A 12 STTGHCVHMRGLPYR----------ATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKAN 78 (102)
T ss_dssp CSSSCEEEEESCCTT----------CCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCC
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCe
Confidence 345789999999999 9999999999999954 99999987 8999999999999999999999 579999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|+|+.|.|.++.+..
T Consensus 79 ~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 79 MQHRYVELFLNSTAG 93 (102)
T ss_dssp SSSSCCEEEEECCCC
T ss_pred ECCcEEEEEECCCCC
Confidence 999999999987654
No 100
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=128.26 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=72.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc-
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY- 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~- 112 (220)
..+.++|||+|||+. +++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|++.
T Consensus 12 ~~p~~~l~V~nLp~~----------~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 12 VSVSPVVHVRGLCES----------VVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCCCSEEEEESCCSS----------CCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCC
Confidence 355789999999999 999999999999999999998853 789999999999999999988654
Q ss_pred -eecCeEEEEEEeccCCCC
Q 027685 113 -LLLGRELTVVFAEENRKK 130 (220)
Q Consensus 113 -~i~g~~l~v~~a~~~~~~ 130 (220)
.|.|+.|.|+|++.+...
T Consensus 76 ~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 76 VYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp CBSSSSBCEEEECSSSSCC
T ss_pred ceECCEEEEEEEccCcccc
Confidence 599999999999876543
No 101
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=123.93 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=72.0
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.|||..
T Consensus 6 ~~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~ 67 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAA----------CTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKE 67 (90)
T ss_dssp SCCSCCEEEESCCTT----------CCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 355789999999999 9999999999999999999998 3499999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.+...
T Consensus 68 ~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 68 VKGKRINVELSTKGQK 83 (90)
T ss_dssp ETTEECEEEESCCCCC
T ss_pred ECCcEEEEEECCCCCC
Confidence 9999999999987643
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=123.95 Aligned_cols=76 Identities=30% Similarity=0.477 Sum_probs=73.2
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
++|||+|||++ +++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|+ ..|+|+
T Consensus 1 ~~l~v~nlp~~----------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~ 69 (77)
T 1uaw_A 1 CKMFIGGLSWQ----------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK 69 (77)
T ss_dssp CCEEEESCCSS----------CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC
T ss_pred CEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE
Confidence 58999999999 9999999999999999999999998889999999999999999999999999 999999
Q ss_pred EEEEEEe
Q 027685 118 ELTVVFA 124 (220)
Q Consensus 118 ~l~v~~a 124 (220)
.|.|++|
T Consensus 70 ~l~v~~a 76 (77)
T 1uaw_A 70 TIDPKVA 76 (77)
T ss_dssp CCEEEEC
T ss_pred EEEEEec
Confidence 9999987
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=9.2e-19 Score=127.98 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce-
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL- 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~- 113 (220)
++..+|||+|||.+ +|+++|.++|++||.|..|.|+.. +|||||+|++.++|++||+.|++..
T Consensus 19 ~ps~~l~V~NLp~~----------~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 19 PASPVVHIRGLIDG----------VVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp CCCSEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 45789999999999 999999999999999999999843 7899999999999999999999875
Q ss_pred -ecCeEEEEEEeccCC
Q 027685 114 -LLGRELTVVFAEENR 128 (220)
Q Consensus 114 -i~g~~l~v~~a~~~~ 128 (220)
|.|++|.|+|++.+.
T Consensus 83 ~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 83 YIAGHPAFVNYSTSQK 98 (100)
T ss_dssp EETTEEEEEEECSCSC
T ss_pred eeCCcEEEEEeccccc
Confidence 789999999998754
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=121.35 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=70.8
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh-CCc
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM-DGY 112 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l-~g~ 112 (220)
....++|||+|||.. +++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||..| ++.
T Consensus 9 ~~~~~~l~V~~l~~~----------~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~ 72 (85)
T 2ytc_A 9 DKTITTLYVGGLGDT----------ITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL 72 (85)
T ss_dssp CSSCCCEEEECCTTT----------SCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC
T ss_pred CCCccEEEEcCCCCC----------CCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe
Confidence 355789999999999 999999999999999999999864 789999999999999999999 999
Q ss_pred eecCeEEEEEEec
Q 027685 113 LLLGRELTVVFAE 125 (220)
Q Consensus 113 ~i~g~~l~v~~a~ 125 (220)
.|+|+.|.|+||+
T Consensus 73 ~~~g~~l~v~~ak 85 (85)
T 2ytc_A 73 IVNGRRLNVKWGR 85 (85)
T ss_dssp EETTEECCEEECC
T ss_pred eECCCEEEEEecC
Confidence 9999999999974
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=132.17 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC--c
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG--Y 112 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g--~ 112 (220)
++.++|||+|||++ +++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|++ .
T Consensus 29 ~ps~~LfVgNLp~~----------vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~ 92 (119)
T 2ad9_A 29 VPSRVIHIRKLPID----------VTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTP 92 (119)
T ss_dssp SCCSEEEEESCCTT----------CCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 45789999999999 999999999999999999999865 79999999999999999999874 6
Q ss_pred eecCeEEEEEEeccCCCCC
Q 027685 113 LLLGRELTVVFAEENRKKP 131 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~~~~ 131 (220)
.|.|++|.|+||+.+..+.
T Consensus 93 ~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 93 VLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp CBTTBCCEEEECSSSSCCC
T ss_pred eECCeEEEEEEccCCCCCc
Confidence 8999999999998776543
No 106
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=9.2e-19 Score=124.65 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
...-|+|+||++. +||++|+++|.+||+|..+.|+. ++|||||+|.+.++|++|++.||+..|.
T Consensus 6 ~~~wL~VgNL~~~----------~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~ 69 (89)
T 2wbr_A 6 GSSWLLLKNLTAQ----------IDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA 69 (89)
T ss_dssp CCCEEEEECCCTT----------CCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccceEEEeCCCcc----------CCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 4678999999999 99999999999999999999975 4899999999999999999999999999
Q ss_pred CeEEEEEEec
Q 027685 116 GRELTVVFAE 125 (220)
Q Consensus 116 g~~l~v~~a~ 125 (220)
|++|.|++|.
T Consensus 70 gr~I~V~~A~ 79 (89)
T 2wbr_A 70 NTTIFAESPS 79 (89)
T ss_dssp TEEEEEECCC
T ss_pred CcEEEEEECC
Confidence 9999999984
No 107
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.1e-19 Score=129.23 Aligned_cols=82 Identities=28% Similarity=0.480 Sum_probs=74.0
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
++|||+|||.+ +++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+ |++|+..|||..|+|+
T Consensus 2 ~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 2 RNIYVGNLVYS----------ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp EEEEEEEECTT----------SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred cEEEECCCCCC----------CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 58999999999 999999999999999999999999888999999999999999 9999999999999999
Q ss_pred EEEEEEeccCCCC
Q 027685 118 ELTVVFAEENRKK 130 (220)
Q Consensus 118 ~l~v~~a~~~~~~ 130 (220)
.|.|++|.+....
T Consensus 71 ~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 71 TIRVTEANPKKSL 83 (90)
T ss_dssp SCSEEEC------
T ss_pred EEEEEEcCCCCCC
Confidence 9999999876543
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=124.52 Aligned_cols=82 Identities=28% Similarity=0.414 Sum_probs=74.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+|+ .|.++.+..++.++|||||+|.+.++|++||+.||+..|
T Consensus 13 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 13 QPSKTLFVKGLSED----------TTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp CCCSSEEEECCCTT----------CCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCc----------cCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 55789999999999 99999999999884 566777777889999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|+.|.|++++++..
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 80 DGNKVTLDWAKPKGE 94 (102)
T ss_dssp TTEECEEEECCCCCS
T ss_pred CCeEEEEEEecCCCC
Confidence 999999999987543
No 109
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=125.27 Aligned_cols=81 Identities=31% Similarity=0.471 Sum_probs=72.8
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|. +.++.+ ..+|||||+|.+.++|++||+.|||.
T Consensus 15 ~~~~~~~l~V~nL~~~----------~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRD----------ARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp SSCCCCEEEEECCCTT----------CCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCc----------CcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3456889999999999 99999999999999996 666643 66899999999999999999999999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|+|+.|.|+++.++.
T Consensus 80 ~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 80 RLGTDTLRVALARQQR 95 (97)
T ss_dssp CSSSSCCEEEECCCCC
T ss_pred EECCcEEEEEEcCCCC
Confidence 9999999999998754
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=130.21 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=76.0
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc---eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
....++|||+|||++ +|+++|+++|.+||. |..|.|+.+.. |.++|||||+|.+.++|++||+ ||
T Consensus 14 ~~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~ 81 (118)
T 2db1_A 14 GGEGYVVKLRGLPWS----------CSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KD 81 (118)
T ss_dssp BCCCCEEEEESCCTT----------CCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GT
T ss_pred CCCCcEEEEeCCCCC----------CCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 355789999999999 999999999999999 89999998876 8999999999999999999998 99
Q ss_pred CceecCeEEEEEEeccC
Q 027685 111 GYLLLGRELTVVFAEEN 127 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~ 127 (220)
++.|+|+.|.|.++..+
T Consensus 82 g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 82 RESMGHRYIEVFKSHRT 98 (118)
T ss_dssp TEEETTEEEEEEEECHH
T ss_pred CCeECCeEEEEEECCHH
Confidence 99999999999998654
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=125.10 Aligned_cols=78 Identities=31% Similarity=0.546 Sum_probs=72.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++||+.|||..|
T Consensus 13 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 13 TQRSRLFVGNLPPD----------ITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCTTEEEEESCCTT----------CCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45789999999999 999999999999999999999854 78999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
.|+.|.|+++.++.
T Consensus 77 ~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 77 RGKQLRVRFACHSA 90 (99)
T ss_dssp TTBCCEEEESSCCS
T ss_pred CCceEEEEEcCCCC
Confidence 99999999998754
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=5.3e-19 Score=147.33 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC--ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG--RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
..++|||+||+++ +|+++|+++|.+|| .|..|.|+.+..++.++|||||+|.+.++|++||+.||++.
T Consensus 67 ~~~~lfVgnL~~~----------~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 67 KRIALYIGNLTWW----------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp --CEEEEESCCTT----------CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred CccEEEEeCCCCC----------CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 4678999999999 99999999999999 99999999999999999999999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|+|+.|+|++|++..
T Consensus 137 ~~Gr~l~V~~a~~~~ 151 (229)
T 3q2s_C 137 LHGQNPVVTPVNKQF 151 (229)
T ss_dssp BTTBCCEEEECCHHH
T ss_pred ECCEEeEEEECCCCc
Confidence 999999999997654
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=7.8e-19 Score=130.79 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=71.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|||+|||++ +++++|+++|.+|| +|..|.|+.+ .++|||||+|.+.++|++||+.|||.+
T Consensus 26 ~~~~~l~VgnLp~~----------~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 26 AKRYRITMKNLPEG----------CSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp CCCEEEEEECSSCC----------CCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCEEEEECCCCC----------CCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 34679999999999 99999999999999 8999998643 468999999999999999999999999
Q ss_pred ecCeEEEEEEeccC
Q 027685 114 LLGRELTVVFAEEN 127 (220)
Q Consensus 114 i~g~~l~v~~a~~~ 127 (220)
|+|+.|.|+++...
T Consensus 92 l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 92 FRGSVITVERDDNP 105 (111)
T ss_dssp ETTEEEEEEESCC-
T ss_pred ECCeEEEEEECCCC
Confidence 99999999998754
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=128.63 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=74.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCC------CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSIC------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~------te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
...++|||+|||+. + ++++|.++|.+||.|..|.|+ ..+|.++|||||+|.+.++|++||..
T Consensus 13 ~~~~~l~V~nLp~~----------~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 13 GIDSVIVVDNVPQV----------GPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SCCSEEEEESCCCC----------CTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCcc----------hhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 44789999999999 8 789999999999999999988 35788999999999999999999999
Q ss_pred hCCceecCe-EEEEEEeccC
Q 027685 109 MDGYLLLGR-ELTVVFAEEN 127 (220)
Q Consensus 109 l~g~~i~g~-~l~v~~a~~~ 127 (220)
|||..|+|+ .|.|+++...
T Consensus 81 l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 81 ADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CSSEECSTTCEEEEECSCCC
T ss_pred hCCcccCCCceEEEEEcchH
Confidence 999999998 9999998754
No 115
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-18 Score=122.38 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC--CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF--GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
....++|||+|||+. +++++|+++|.+| |.|..|.++ ++||||+|.+.++|++||..|||
T Consensus 12 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 12 MSSVKILYVRNLMLS----------TSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp SSCCCEEEEESCCTT----------CCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS
T ss_pred cCCcCEEEEeCCCCC----------CCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC
Confidence 345789999999999 9999999999999 999999876 57999999999999999999999
Q ss_pred ceecCeEEEEEEeccCC
Q 027685 112 YLLLGRELTVVFAEENR 128 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~~ 128 (220)
..|+|+.|.|+++.+..
T Consensus 74 ~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 74 KVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp EEETTEEEEEECCCCCC
T ss_pred CEeCCcEEEEEECCCCC
Confidence 99999999999998754
No 116
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.2e-18 Score=134.26 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc---eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 32 RGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 32 ~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
......++|||+|||++ +|+++|+++|.+||. |..|.|+.+.. |.++|||||+|.+.++|++||+
T Consensus 39 ~~~~~~~~lfVgnLp~~----------~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~- 106 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWS----------CSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK- 106 (136)
T ss_dssp SSCCTTCEEEEESCCTT----------CCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-
T ss_pred CCCCCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-
Confidence 34456889999999999 999999999999999 88999999876 8999999999999999999998
Q ss_pred hCCceecCeEEEEEEeccC
Q 027685 109 MDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 109 l~g~~i~g~~l~v~~a~~~ 127 (220)
||+..|+|+.|.|.++...
T Consensus 107 ~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 107 KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp TTEEESSSSEEEEEECCHH
T ss_pred cCCCEECCEEEEEEECChH
Confidence 9999999999999998643
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-19 Score=133.03 Aligned_cols=86 Identities=24% Similarity=0.386 Sum_probs=73.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.+.++|||+|||+. +++++|.++|.+||.|..|.+..+..++..+|||||+|.+.++|++||+.|||..|
T Consensus 23 ~~~~~l~V~nLp~~----------~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 23 EPNKVLYLKNLSPR----------VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp SCCSEEEEECCCTT----------CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45789999999999 99999999999999984332222222778899999999999999999999999999
Q ss_pred cCeEEEEEEeccCCCC
Q 027685 115 LGRELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~ 130 (220)
+|+.|.|+++.+....
T Consensus 93 ~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 93 YGKILVIEFGKNKKQR 108 (115)
T ss_dssp SSCBCEEEECCCCSCC
T ss_pred CCcEEEEEEccCCCCC
Confidence 9999999999876543
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=126.61 Aligned_cols=79 Identities=18% Similarity=0.369 Sum_probs=73.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.. +++++|+++|.+||.|..|.|+.+ ++||||+|.+.++|++||..|||..|
T Consensus 23 ~~~~~l~V~nl~~~----------~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 23 PKNCTVYCGGIASG----------LTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp SSCCEEEEECCSSC----------CCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45789999999999 999999999999999999999865 78999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|.|+.+...
T Consensus 87 ~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 87 EGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEECEEECCCCCCS
T ss_pred CCcEEEEEecCCCCC
Confidence 999999999987643
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.8e-18 Score=126.83 Aligned_cols=78 Identities=29% Similarity=0.485 Sum_probs=72.5
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....++|||+|||++ +++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+.|||..
T Consensus 28 ~~~~~~l~V~nLp~~----------~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~ 89 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLD----------VQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKS 89 (108)
T ss_dssp CCSCSEEEECSSCTT----------CCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCC----------CCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 456789999999999 9999999999999999999987 6899999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|+|+.|.|+++.+...
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 90 FANQPLEVVYSKLPAK 105 (108)
T ss_dssp ETTEECEEESCSCCC-
T ss_pred ECCeEEEEEEecCCCC
Confidence 9999999999987654
No 120
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=123.56 Aligned_cols=79 Identities=27% Similarity=0.335 Sum_probs=70.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc-eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC-
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR-LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG- 111 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g- 111 (220)
....++|||+|||++ +++++|+++|.+||. |..+.+. .++||||+|.+.++|++||+.|||
T Consensus 5 ~~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~ 67 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPA----------VTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGK 67 (93)
T ss_dssp CCCCCCEEEECCCTT----------CCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTT
T ss_pred CCCCcEEEEeCCCCC----------CCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCC
Confidence 355789999999999 999999999999999 5555553 378999999999999999999999
Q ss_pred ceecCeEEEEEEeccCCC
Q 027685 112 YLLLGRELTVVFAEENRK 129 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~~~ 129 (220)
..|+|+.|.|+++.++..
T Consensus 68 ~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 68 VELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp CEETTEECEEEECCCCCC
T ss_pred eeECCEEEEEEEccCccc
Confidence 999999999999987643
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=5.8e-18 Score=122.62 Aligned_cols=77 Identities=26% Similarity=0.487 Sum_probs=71.1
Q ss_pred CCCCCCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 33 GRDLPTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
..+..++|||+|||+ . +++++|.++|.+||.|..|.|. +|||||+|.+.++|++||+.|||
T Consensus 18 ~~~~~~~l~V~nLp~~~----------~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g 79 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKN----------VSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp -CCTTCEEEEESCCSSC----------CCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCccc----------CCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999998 9 9999999999999999999985 78999999999999999999999
Q ss_pred ceecCeEEEEEEeccC
Q 027685 112 YLLLGRELTVVFAEEN 127 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~~ 127 (220)
..|+|+.|.|+++...
T Consensus 80 ~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 80 EMNFGKKLILEVSSSN 95 (97)
T ss_dssp SEETTEECEEEECCCC
T ss_pred CEECCEEEEEEecCCC
Confidence 9999999999998764
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=126.73 Aligned_cols=76 Identities=30% Similarity=0.595 Sum_probs=71.9
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
++|||+|||++ +++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.|||..|+|+
T Consensus 1 ~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 1 MKVYVGNLGTG----------AGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp CEEEEECCCSS----------CSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred CEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 68999999999 999999999999999999999875 589999999999999999999999999999
Q ss_pred EEEEEEeccCC
Q 027685 118 ELTVVFAEENR 128 (220)
Q Consensus 118 ~l~v~~a~~~~ 128 (220)
.|.|+++.+..
T Consensus 66 ~l~V~~a~~~~ 76 (101)
T 2hvz_A 66 RVRVELSTGMP 76 (101)
T ss_dssp CCEEEESSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.9e-18 Score=124.61 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=71.3
Q ss_pred CCCCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
++.++|||+|||+ . +++++|.++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..
T Consensus 8 ~~~~~l~V~nlp~~~----------~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKN----------VSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEM 69 (96)
T ss_dssp -CCEEEEEESSTTSC----------CCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEeCCCccc----------CCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCe
Confidence 5578999999998 9 9999999999999999999985 6899999999999999999999999
Q ss_pred ecCeEEEEEEeccCCC
Q 027685 114 LLGRELTVVFAEENRK 129 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~ 129 (220)
|.|+.|.|+++.+...
T Consensus 70 ~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 70 NFGKKLILEVSSSNAR 85 (96)
T ss_dssp CBTTTBCEEEEECCCC
T ss_pred eCCcEEEEEEcCcCCC
Confidence 9999999999987643
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=122.02 Aligned_cols=73 Identities=27% Similarity=0.513 Sum_probs=67.7
Q ss_pred CCeEEEccCCCCCccccccCCCC------CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSIC------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~------te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.++|||+|||.. + ++++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|++||+.||
T Consensus 1 ~~~l~V~nLp~~----------~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 1 DSVIVVDNVPQV----------GPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CCEEEEESCCCC----------CTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred CCEEEEeCCCCC----------cHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhc
Confidence 368999999999 8 789999999999999999988 3578899999999999999999999999
Q ss_pred CceecCe-EEEE
Q 027685 111 GYLLLGR-ELTV 121 (220)
Q Consensus 111 g~~i~g~-~l~v 121 (220)
|..|+|+ .|.|
T Consensus 69 g~~~~g~~~l~V 80 (81)
T 2krb_A 69 GYKLDKQHTFRV 80 (81)
T ss_dssp SCCCSSSSCCCC
T ss_pred CcccCCceeEEe
Confidence 9999999 8876
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=130.37 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=73.9
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHH----HHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
..+.++|||+|||+. +++++|+ ++|++||.|..|.+.. ++..+|||||+|.+.++|+.||..|
T Consensus 26 ~~p~~~LfV~nL~~~----------~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~l 92 (127)
T 2a3j_A 26 TEPSQVVLITNINPE----------VPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAF 92 (127)
T ss_dssp CSCCSEEEEESCCTT----------SCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHH
Confidence 355789999999999 9999876 6999999999988863 5788999999999999999999999
Q ss_pred CCceecCeEEEEEEeccCC
Q 027685 110 DGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 110 ~g~~i~g~~l~v~~a~~~~ 128 (220)
||..|.|+.|.|+||..+.
T Consensus 93 ng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 93 QGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp TTCCCTTSCCEEEECCCCC
T ss_pred CCCEeCCCEEEEEEccCcc
Confidence 9999999999999998654
No 126
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=121.85 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=68.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||. |||..|
T Consensus 6 ~~~~~l~V~nl~~~----------~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~ 69 (94)
T 2e5g_A 6 SGLRSVFVSGFPRG----------VDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL 69 (94)
T ss_dssp TTCCEEEEECCCTT----------CCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE
T ss_pred CCCCEEEEECCCCC----------CCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE
Confidence 44679999999999 9999999999999999987 44444554 99999999999999999 999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|+++.+..
T Consensus 70 ~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 70 GGHRLRVRPREQKE 83 (94)
T ss_dssp TTEECCCBCSCCSC
T ss_pred CCEEEEEEECCcCC
Confidence 99999999887554
No 127
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.8e-18 Score=124.48 Aligned_cols=83 Identities=22% Similarity=0.486 Sum_probs=75.2
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHH----HHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
.++.++|||+|||+. +++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.|++.|
T Consensus 5 ~~~~~~l~V~nLp~~----------~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l 71 (97)
T 1nu4_A 5 TRPNHTIYINNLNEK----------IKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSM 71 (97)
T ss_dssp -CCCSEEEEESCCTT----------SCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 356789999999999 9999999 9999999999999873 4667899999999999999999999
Q ss_pred CCceecCeEEEEEEeccCCC
Q 027685 110 DGYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 110 ~g~~i~g~~l~v~~a~~~~~ 129 (220)
||..|+|+.|.|+++.+...
T Consensus 72 ~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 72 QGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp TTCEETTEECEEEECSSCCT
T ss_pred CCCEECCcEEEEEEccCCCc
Confidence 99999999999999987643
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=126.71 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=72.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|+++|.+| .|..|.|+.+.. |.++|||||+|.+.++|++|| .||+..|+|
T Consensus 16 ~~~v~V~nLp~~----------~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 16 DLYVSVHGMPFS----------AMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp HHEEEEECCCSS----------CCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 579999999999 9999999999999 899999999875 899999999999999999999 789999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|..+.+.
T Consensus 83 r~i~V~~a~~~ 93 (109)
T 2dnn_A 83 RYVEVSPATER 93 (109)
T ss_dssp EEEEEEECCHH
T ss_pred eEEEEEECCcc
Confidence 99999888643
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-19 Score=130.48 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=75.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ |||..|
T Consensus 15 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 15 TTPFNLFIGNLNPN----------KSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp SCSEEEEEECCCTT----------SCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 45789999999999 999999999999999887 666666778899999999999999999998 999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|+.|.|+++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 83 FGNEIKLEKPKGRDG 97 (101)
T ss_dssp TTBCCEEECCSCCCC
T ss_pred CCcEEEEEEcCCCCC
Confidence 999999999987543
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.4e-18 Score=124.89 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=71.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.+ +++++|+++|.+||.|..|.|+ ..+|||||+|.+.++|++||..|||..|
T Consensus 25 ~~~~~l~V~nlp~~----------~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 88 (101)
T 2la4_A 25 PRVTTAYIGNIPHF----------ATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF 88 (101)
T ss_dssp SSCCEEEEESCCTT----------CCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEcCCCcc----------cCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34689999999999 9999999999999999999998 3479999999999999999999999999
Q ss_pred cCeEEEEEEecc
Q 027685 115 LGRELTVVFAEE 126 (220)
Q Consensus 115 ~g~~l~v~~a~~ 126 (220)
+|+.|.|+|+++
T Consensus 89 ~g~~l~V~~a~~ 100 (101)
T 2la4_A 89 QGRNLRTGWGKE 100 (101)
T ss_dssp TTEECCCCBCCC
T ss_pred CCeEEEEEeccC
Confidence 999999999875
No 131
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=127.91 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCc---eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGR---LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
....++|||+|||++ +|+++|+++|.+||. |..|.|+.+.. |.++|||||+|.+.++|++||. ||
T Consensus 8 ~~~~~~l~V~nLp~~----------~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~ 75 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWS----------CTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KH 75 (107)
T ss_dssp CSSCCEEEEECCCSS----------CCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TT
T ss_pred CCCccEEEEeCCCCC----------CCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hC
Confidence 356889999999999 999999999999988 89999999876 8999999999999999999998 99
Q ss_pred CceecCeEEEEEEeccC
Q 027685 111 GYLLLGRELTVVFAEEN 127 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~ 127 (220)
+..|+|+.|.|.++.+.
T Consensus 76 ~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 76 RMYMGQRYVEVYEINNE 92 (107)
T ss_dssp TCCSSSSCCCCEECCHH
T ss_pred cceeCCeEEEEEECCHH
Confidence 99999999999998753
No 132
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=126.36 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=71.1
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||+. +++++|+++|.+||.|..|.|+. .++||||+|.+.++|++||+.|||..|+|
T Consensus 10 ~~~l~V~nLp~~----------~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 10 KTVILAKNLPAG----------TLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp EEEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 679999999999 99999999999999999999874 47899999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|+||....
T Consensus 74 ~~l~V~~a~~~~ 85 (111)
T 1whx_A 74 VPLYLEWAPIGV 85 (111)
T ss_dssp SBCEEEEEETTT
T ss_pred eEEEEEECCCCc
Confidence 999999998644
No 133
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=6.9e-18 Score=125.26 Aligned_cols=80 Identities=30% Similarity=0.520 Sum_probs=73.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+..++|||+|||+. +++++|.++|.+||.|..|.|+.+ +..+|||||+|.+.++|++||..|||..|
T Consensus 6 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 6 EVNRILYIRNLPYK----------ITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp TCCSEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45789999999999 999999999999999999999865 45589999999999999999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
+|+.|.|+++.+.
T Consensus 73 ~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 73 SNRYLVVLYYNAN 85 (115)
T ss_dssp SSCBCEEEECCHH
T ss_pred CCeEEEEEEecCC
Confidence 9999999999854
No 134
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=120.76 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEE-EecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|||+|||+. +++++|+++|.+||.|..| .|+.+..+ +.|||+|.+.++|++||+.|||..
T Consensus 13 ~~~~~l~V~nlp~~----------~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~ 78 (96)
T 2e44_A 13 QRIRKLQIRNIPPH----------LQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQ 78 (96)
T ss_dssp CSCCCEEEEEECSS----------SCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEEcCCCC----------CCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCE
Confidence 34789999999999 9999999999999999999 58876543 349999999999999999999999
Q ss_pred ecCeEEEEEEeccC
Q 027685 114 LLGRELTVVFAEEN 127 (220)
Q Consensus 114 i~g~~l~v~~a~~~ 127 (220)
|+|+.|.|+++.++
T Consensus 79 ~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 79 LENFTLKVAYIPDE 92 (96)
T ss_dssp CSSCBCEEEECCCC
T ss_pred ECCcEEEEEEcCcc
Confidence 99999999999876
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.1e-18 Score=119.85 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=71.4
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeE
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRE 118 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~ 118 (220)
+|||+|||++ +++++|+++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+. ++..|+|+.
T Consensus 1 ~l~v~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPD----------TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CEEESCCCSS----------CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred CEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 6999999999 99999999999999999999999988899999999999999999999975 899999999
Q ss_pred EEEEEe
Q 027685 119 LTVVFA 124 (220)
Q Consensus 119 l~v~~a 124 (220)
|.|.+|
T Consensus 70 l~v~~a 75 (75)
T 1iqt_A 70 CEIKVA 75 (75)
T ss_dssp CCEEEC
T ss_pred EEEEEC
Confidence 999875
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=122.58 Aligned_cols=79 Identities=19% Similarity=0.385 Sum_probs=71.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|+++|.+||.|..| ..++..+|||||+|.+.++|++||+.|||..|
T Consensus 14 ~~~~~l~V~nL~~~----------~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 14 RAARTLLAKNLSFN----------ITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp TGGGEEEEESCCSS----------CCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45789999999999 9999999999999988766 24678899999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|+++.++.
T Consensus 79 ~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 79 DGRSVSLYYTGEKG 92 (96)
T ss_dssp TTEEEEEEECSSSC
T ss_pred CCeEEEEEEcCCCC
Confidence 99999999998754
No 137
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=133.99 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=73.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEE--eccc---CCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIY--LPRD---YYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~--i~~~---~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
.+.++|||+|||+. +++++|.++|.+||.|..|. ++.+ ..++..+|||||+|.+.++|++||..|
T Consensus 43 ~~~~~l~V~nLp~~----------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 112 (143)
T 3egn_A 43 EPNCRIYVKNLAKH----------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEA 112 (143)
T ss_dssp SCCSEEEEEEECTT----------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHh
Confidence 45789999999999 99999999999999987641 1111 236788999999999999999999999
Q ss_pred CCceecCeEEEEEEeccCCCC
Q 027685 110 DGYLLLGRELTVVFAEENRKK 130 (220)
Q Consensus 110 ~g~~i~g~~l~v~~a~~~~~~ 130 (220)
||..|.|+.|.|++|.....+
T Consensus 113 ng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 113 NGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp TTBEETTEECEEEECCCSCC-
T ss_pred CCCEeCCcEEEEEECCCCCCc
Confidence 999999999999999876543
No 138
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=118.30 Aligned_cols=77 Identities=29% Similarity=0.422 Sum_probs=70.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|| + +++++|+++|.+||+|..|.|. ..+|||||+|.+.++|++||..|||..|
T Consensus 13 ~~~~~l~V~n~--~----------~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 13 RKGNTLYVYGE--D----------MTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp CCCSEEEEECS--S----------CCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEcCC--C----------CCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45789999996 7 9999999999999999999985 4588999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|+.|.|+++.++..
T Consensus 75 ~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 75 ESVQLKVNIARKQPM 89 (97)
T ss_dssp TTEEEEEECCSSCCC
T ss_pred CCeEEEEEECCCCCC
Confidence 999999999987654
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2e-19 Score=134.06 Aligned_cols=85 Identities=28% Similarity=0.369 Sum_probs=79.3
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE--------EEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD--------IYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
...++|||+|||+. +++++|+++|.+||.|.. |.|+.+..++.++|||||+|.+.++|++||
T Consensus 5 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (116)
T 2lcw_A 5 SDNNTIFVQGLGEN----------VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAI 74 (116)
Confidence 45789999999999 999999999999999998 889988888999999999999999999999
Q ss_pred HhhCCceecCeEEEEEEeccCCC
Q 027685 107 YHMDGYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 107 ~~l~g~~i~g~~l~v~~a~~~~~ 129 (220)
..|||..|.|+.|.|+++.++..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 75 DWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 99999999999999999987643
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-17 Score=128.31 Aligned_cols=81 Identities=33% Similarity=0.472 Sum_probs=77.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.. +++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|
T Consensus 85 ~~~~~l~v~nl~~~----------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 85 DDTFNLFVGDLNVN----------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp TTCEEEEEESCCTT----------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCceEEECCCCCC----------CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 45779999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEec
Q 027685 115 LGRELTVVFAE 125 (220)
Q Consensus 115 ~g~~l~v~~a~ 125 (220)
+|+.|.|.||+
T Consensus 155 ~g~~i~v~~a~ 165 (166)
T 3md3_A 155 NGRPLRINWAA 165 (166)
T ss_dssp TTEECEEEESC
T ss_pred CCcEEEEEecC
Confidence 99999999986
No 141
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.7e-17 Score=135.85 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=77.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.+.++|||+|||++ +|+++|.++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+.||+..+
T Consensus 13 ~p~~tlfVgnLp~~----------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~ 82 (213)
T 4f02_A 13 YPMASLYVGDLHPD----------VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 82 (213)
T ss_dssp --CCEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc
Confidence 34679999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
.|+.|.|.++...
T Consensus 83 ~g~~i~~~~~~~~ 95 (213)
T 4f02_A 83 KGKPVRIMWSQRD 95 (213)
T ss_dssp TTEECEEEECCCC
T ss_pred CCccccccccccc
Confidence 9999999988654
No 142
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.5e-17 Score=128.06 Aligned_cols=82 Identities=35% Similarity=0.631 Sum_probs=78.1
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||+.|+|..|.|
T Consensus 2 ~~~l~v~nlp~~----------~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 2 KTNLIVNYLPQN----------MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71 (167)
T ss_dssp CSEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cceEEEcCCCCC----------CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 579999999999 9999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
..|.|.++.+..
T Consensus 72 ~~l~v~~~~~~~ 83 (167)
T 1fxl_A 72 KTIKVSYARPSS 83 (167)
T ss_dssp EECEEEECCCCC
T ss_pred ceEEEEecCCCc
Confidence 999999987653
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.5e-18 Score=132.98 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +|+++|+++|.+|| |+.|.|+.+.. +.++|||||+|.+.++|++|| .||+..|
T Consensus 44 ~~~~~lfV~nLp~~----------~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l 110 (139)
T 2hgn_A 44 TTGHCVHMRGLPYK----------ATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM 110 (139)
T ss_dssp -CCCCEECCSCCTT----------CCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE
Confidence 45789999999999 99999999999999 67999999875 899999999999999999999 8899999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|.++.+...
T Consensus 111 ~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 111 QHRYIELFLNSTTGA 125 (139)
T ss_dssp SSCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999886543
No 144
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=4.3e-18 Score=123.75 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=75.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|.++|.+||.|..|.|+.+. ++..+|||||+|.+.++|++||. ++..|
T Consensus 7 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~ 73 (102)
T 2xs2_A 7 IMPNTVFVGGIDVR----------MDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF 73 (102)
T ss_dssp EEEEEEEEECCCTT----------CCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE
Confidence 34689999999999 9999999999999999999999998 89999999999999999999997 99999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|.++..+.
T Consensus 74 ~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 74 HGKKLKLGPAIRKQ 87 (102)
T ss_dssp TTEECEEEEEEECC
T ss_pred CCEEEEEEECCcCc
Confidence 99999999988654
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=127.10 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=73.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCce----EEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRL----KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
...++|||+|||++ +|+++|+++|.+||.| ..|.|+.+ .+|.++|||||+|.+.++|++||+. |
T Consensus 21 ~~~~~v~V~nLp~~----------~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~ 88 (123)
T 2dha_A 21 ENQVIVRMRGLPFT----------ATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-H 88 (123)
T ss_dssp CSCCEEEECSCCTT----------CCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-T
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-C
Confidence 45789999999999 9999999999999875 68889888 4899999999999999999999976 9
Q ss_pred CceecCeEEEEEEeccC
Q 027685 111 GYLLLGRELTVVFAEEN 127 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~ 127 (220)
++.|+|+.|.|..+.++
T Consensus 89 ~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 89 KDLLGKRYIELFRSTAA 105 (123)
T ss_dssp TEESSSCEECCEEECHH
T ss_pred CCeeCCeEEEEEECCHH
Confidence 99999999999988643
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.3e-17 Score=128.69 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=78.7
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||++ +++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|+|..|.
T Consensus 2 ~~~~l~v~nlp~~----------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 2 SNTNLIVNYLPQD----------MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR 71 (168)
T ss_dssp CCSEEEEECCCTT----------CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CccEEEEeCCCCC----------CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC
Confidence 3689999999999 999999999999999999999999888999999999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|.++.+..
T Consensus 72 g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 72 NKRLKVSYARPGG 84 (168)
T ss_dssp TEECEEEECCCCS
T ss_pred CcEEEEEecCCCc
Confidence 9999999988654
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=124.96 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCCCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC--
Q 027685 34 RDLPTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-- 110 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~-- 110 (220)
..+.++|||+|||+ . +++++|.++|.+||+|..|.|+. .+|||||+|.+.++|++||+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~----------~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~ 85 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSG----------YSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKK 85 (112)
T ss_dssp SCCCCEEEEESCCCSS----------CCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCcc----------CCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccC
Confidence 34578999999999 5 89999999999999999999974 37999999999999999999886
Q ss_pred CceecCeEEEEEEeccCCC
Q 027685 111 GYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~~~ 129 (220)
+..|.|+.|.|++|+....
T Consensus 86 ~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 86 ALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CCCSSSSCCEEEEECSCSS
T ss_pred CceECCEEEEEEECccccc
Confidence 4569999999999986543
No 148
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=2.2e-17 Score=117.07 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=70.3
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||++ +++++|+++|.+| .|..|.|. ..+|||||+|.+.++|++||+.|||..|+
T Consensus 4 ~~~~l~V~nLp~~----------~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 4 GSSGILVKNLPQD----------SNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCEEEESCCSS----------CCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCC----------CCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4689999999999 9999999999999 99999885 55899999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|+++....
T Consensus 67 g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 67 GKDLIVQLQPTDA 79 (88)
T ss_dssp TEEEEEEECCCCC
T ss_pred CcEEEEEEcCCCc
Confidence 9999999987643
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3.8e-17 Score=132.67 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=79.6
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||.. +++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|+
T Consensus 124 ~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 124 AFNRIYVASVHQD----------LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp TSCEEEEECCCTT----------CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCcEEEEeCCCCc----------CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 4589999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEeccCCC
Q 027685 116 GRELTVVFAEENRK 129 (220)
Q Consensus 116 g~~l~v~~a~~~~~ 129 (220)
|+.|.|.++.+...
T Consensus 194 g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 194 GQYLRVGKAVTPPM 207 (216)
T ss_dssp SSBCEEEECSSCSS
T ss_pred CcEEEEEEecCCCC
Confidence 99999999987643
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.2e-17 Score=128.24 Aligned_cols=81 Identities=33% Similarity=0.632 Sum_probs=74.6
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||+. +++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||..|||.
T Consensus 69 ~~~~~~~l~V~nl~~~----------~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNN----------GNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp SSTTSCEEEEESCCSC----------CSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 3455789999999999 999999999999999999999875 4899999999999999999999999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|+|+.|.|+++.++.
T Consensus 134 ~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 134 TLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSSSSCCEEEECCCCC
T ss_pred EECCeEEEEEEcCCCC
Confidence 9999999999998753
No 151
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=123.78 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=70.9
Q ss_pred CCCCeEEE--ccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 35 DLPTSLLV--RNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 35 ~~~~~l~V--~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
++..+||| +||++. +++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++|++.|||.
T Consensus 23 ~pt~~L~V~Ng~L~~~----------~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 23 YATQSLVVANGGLGNG----------VSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCCSEEEEETCTGGGT----------CCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCC----------CCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCC
Confidence 45678999 779999 999999999999999999988743 789999999999999999999999
Q ss_pred ee-----cCeEEEEEEeccCCC
Q 027685 113 LL-----LGRELTVVFAEENRK 129 (220)
Q Consensus 113 ~i-----~g~~l~v~~a~~~~~ 129 (220)
+| .|.+|.|.|+.....
T Consensus 87 ~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 87 EVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp EEECTTSCEEECEEEEESCCCC
T ss_pred EEccccCCCcEEEEEecccCcc
Confidence 98 689999999986543
No 152
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=121.61 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=69.7
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCC---CCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYT---GEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
....++|||+|||++ +++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++||+.|+
T Consensus 5 ~~~~~~lfVgnLp~~----------~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPD----------IDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSCCCCEEEECCCTT----------CCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCEEEEcCCCCC----------CCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 345789999999999 99999999999999999 888888766 7899999999999999999999984
Q ss_pred CceecCeEEEEEEecc
Q 027685 111 GYLLLGRELTVVFAEE 126 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~ 126 (220)
.|+|..|.|..+..
T Consensus 74 --~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 74 --EEDGKLYLCVSSPT 87 (114)
T ss_dssp --EETTEEEEEECCSS
T ss_pred --hcCCcEEEeccCCC
Confidence 47787777765543
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=1.3e-16 Score=117.68 Aligned_cols=77 Identities=25% Similarity=0.487 Sum_probs=70.0
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+.. +++++|+++|.+||.|..|.| .++||||+|.+.++|++||+.||+..|
T Consensus 25 ~~~~~l~V~nl~~~~---------~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 87 (110)
T 1wf1_A 25 SINSRVFIGNLNTAL---------VKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL 87 (110)
T ss_dssp TCSSEEEECSCCCSS---------CCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEeCCCccc---------CCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 346899999999963 699999999999999999998 378999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
+|+.|.|+++....
T Consensus 88 ~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 88 AGQTLDINMAGEPK 101 (110)
T ss_dssp TTEECCEEESCCCC
T ss_pred CCeEEEEEECCCCC
Confidence 99999999997543
No 154
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-17 Score=125.06 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCeEEEccC----CCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHH----HHH
Q 027685 37 PTSLLVRNL----RHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PAD----AAD 104 (220)
Q Consensus 37 ~~~l~V~~L----p~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~----a~~ 104 (220)
+++|||+|| |+. +++++|+++|.+||+|..|.++.|+.||.++|||||+|.+ .++ |.+
T Consensus 2 p~kI~VgnL~~~~~~~----------tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~k 71 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTN----------IQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFS 71 (136)
T ss_dssp CCEEEEEESSSSCCCC----------CCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHH
T ss_pred CcEEEEeCCCCCCCCC----------CCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHH
Confidence 589999999 999 9999999999999999999999999999999999999996 333 788
Q ss_pred HHH--hhCCceecCeEEEEEEeccC
Q 027685 105 AKY--HMDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 105 Al~--~l~g~~i~g~~l~v~~a~~~ 127 (220)
|+. .|||..|+|+.|.|++....
T Consensus 72 Ai~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 72 AVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHhhhcCCeecCcEEEEEECccc
Confidence 988 78999999999999986543
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=5.1e-17 Score=130.20 Aligned_cols=85 Identities=26% Similarity=0.386 Sum_probs=80.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.. +++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|
T Consensus 112 ~~~~~l~v~nl~~~----------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 181 (198)
T 2yh0_A 112 DSAHKLFIGGLPNY----------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 181 (198)
T ss_dssp CCCCEEEEECCCTT----------CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 55789999999999 99999999999999999999999988999999999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|.++.+...
T Consensus 182 ~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 182 GDKKLLVQRASVGAK 196 (198)
T ss_dssp TTEECEEEESCCCCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987643
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=4.7e-17 Score=127.58 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=76.7
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||.. +++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++|++.|||..|+
T Consensus 93 ~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 93 GAHKLFIGGLPNY----------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp TTTCEEEECCCTT----------CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred CCCEEEEEcCCCc----------CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 3789999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEec
Q 027685 116 GRELTVVFAE 125 (220)
Q Consensus 116 g~~l~v~~a~ 125 (220)
|+.|.|++|.
T Consensus 163 g~~l~V~~As 172 (172)
T 2g4b_A 163 DKKLLVQRAS 172 (172)
T ss_dssp TEECEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999973
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=2.2e-17 Score=125.61 Aligned_cols=79 Identities=23% Similarity=0.239 Sum_probs=72.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceE--EEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLK--DIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
...++|||+|||++ +|+++|+++|++| .|. .|.|+.+.. |.++|||||+|.+.++|++||+. ++.
T Consensus 40 ~~~~~lfVgnLp~~----------~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~ 106 (126)
T 2hgm_A 40 ANDGFVRLRGLPFG----------CTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKE 106 (126)
T ss_dssp SSCCEEEEECCCTT----------CCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTC
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCC
Confidence 45789999999999 9999999999999 576 899999876 89999999999999999999975 779
Q ss_pred eecCeEEEEEEecc
Q 027685 113 LLLGRELTVVFAEE 126 (220)
Q Consensus 113 ~i~g~~l~v~~a~~ 126 (220)
.|+|+.|.|..+..
T Consensus 107 ~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 107 RIGHRYIEVFKSSQ 120 (126)
T ss_dssp CBTTBCCCCEEECH
T ss_pred EECCEEEEEEECCH
Confidence 99999999998864
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=9.1e-17 Score=128.50 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=75.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||+. +++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|
T Consensus 102 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~ 170 (196)
T 1l3k_A 102 LTVKKIFVGGIKED----------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV 170 (196)
T ss_dssp -CCSEEEEECCTTT----------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE
T ss_pred CCcceEEEeCCCCC----------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE
Confidence 34689999999999 99999999999999999999999988999999999999999999999976 79999
Q ss_pred cCeEEEEEEeccCCCC
Q 027685 115 LGRELTVVFAEENRKK 130 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~~ 130 (220)
+|+.|.|.+|.++...
T Consensus 171 ~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 171 NGHNCEVRKALSKQEM 186 (196)
T ss_dssp TTEECEEEECC-----
T ss_pred CCEEEEEEecCChhHh
Confidence 9999999999876543
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.4e-16 Score=121.70 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=69.6
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceE-EEEEeCCHHHHHHHHHhhCCceecC
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..|||+||++. +|+++|.++|++||+|..|.|+.. .++| |||+|.+.++|++|++.|||..|.|
T Consensus 29 L~I~V~NL~~~----------vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 29 LRIIVENLFYP----------VTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEEESCCSC----------CCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEEECCCCCC----------CCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 45779999999 999999999999999999988753 2677 9999999999999999999999998
Q ss_pred --eEEEEEEeccCCC
Q 027685 117 --RELTVVFAEENRK 129 (220)
Q Consensus 117 --~~l~v~~a~~~~~ 129 (220)
..|.|+|++....
T Consensus 94 ~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 94 ACCTLRIDFSKLTSL 108 (130)
T ss_dssp TEEEEEEEECSCSSC
T ss_pred CCcEEEEEecCCCce
Confidence 8999999987643
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.5e-17 Score=127.73 Aligned_cols=80 Identities=28% Similarity=0.397 Sum_probs=76.2
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||.. +++++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|++||+ |++..|+|
T Consensus 87 ~~~l~V~nlp~~----------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 87 TGKIFVGGIGPD----------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CEEEEEEEECTT----------CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred CCeEEECCCCCC----------CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 568999999999 9999999999999999999999998899999999999999999999997 89999999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|.+|.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999999864
No 161
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=1.6e-16 Score=113.24 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=62.9
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
...++++|||+|||++ +|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.
T Consensus 7 ~~~~~~~l~V~~Lp~~----------~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~ 67 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTED----------MTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE 67 (89)
T ss_dssp ----CCEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC
Confidence 3456899999999999 999999999999999999999864 58999999999999984 3555
Q ss_pred e--ecCeEEEEEEeccCC
Q 027685 113 L--LLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~--i~g~~l~v~~a~~~~ 128 (220)
. +.|..|.|.+|.++.
T Consensus 68 ~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 68 DLIIKGISVHISNAEPKH 85 (89)
T ss_dssp EEEETTEEEEEEECC---
T ss_pred CcccCCEEEEEEEcCCCC
Confidence 4 569999999988654
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=4e-17 Score=133.68 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=74.3
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||+. +++++|.++|.+||.|..|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|
T Consensus 103 ~~~l~v~nl~~~----------~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 103 VGNIFIKNLDKS----------IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp TTEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccceECCcccc----------cHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 568999999999 9999999999999999999999874 3468999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|++|.++.
T Consensus 171 ~~i~V~~a~~~~ 182 (213)
T 4f02_A 171 RKVFVGRFKSRK 182 (213)
T ss_dssp EECEEEECCCHH
T ss_pred EEEEEEEcCCCc
Confidence 999999998654
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.7e-16 Score=129.86 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCCeEEEccCC-CCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 36 LPTSLLVRNLR-HDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 36 ~~~~l~V~~Lp-~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
..++|||+||| +. +++++|.++|.+||.|..|.|+.+ .+|||||+|.+.++|+.||+.|||..|
T Consensus 3 ~~~~l~V~nL~~~~----------~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 3 DSPVLMVYGLDQSK----------MNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFM 67 (205)
T ss_dssp CCSEEEEECCCTTT----------CCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCccc----------CCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 37899999999 78 999999999999999999999865 279999999999999999999999999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
.|+.|.|.+++.+.
T Consensus 68 ~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 68 FGQKMNVCVSKQPA 81 (205)
T ss_dssp TTEECEEEECSCSC
T ss_pred CCceEEEEEccCCc
Confidence 99999999997554
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=8.5e-17 Score=127.32 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=70.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
-.+|||+||++. +++++|.++|++||+|..|.|+.. ..++||||+|.+.++|++|++.|||..|.|
T Consensus 46 vl~l~VgNL~~~----------vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 46 VLRIIVENLFYP----------VTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp EEEEEECSCCSC----------CCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred eEEEEEeCcCCC----------CCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 356889999999 999999999999999999998643 357899999999999999999999999966
Q ss_pred --eEEEEEEeccCC
Q 027685 117 --RELTVVFAEENR 128 (220)
Q Consensus 117 --~~l~v~~a~~~~ 128 (220)
+.|+|+|+++..
T Consensus 112 ~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 112 ACCTLRIDFSKLTS 125 (164)
T ss_dssp SCSCEEEEECSSSS
T ss_pred CCcEEEEEEecCCc
Confidence 999999998764
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.3e-16 Score=127.60 Aligned_cols=83 Identities=29% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +|+++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+. ++..|
T Consensus 11 ~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~ 79 (196)
T 1l3k_A 11 EQLRKLFIGGLSFE----------TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV 79 (196)
T ss_dssp GGGGEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE
Confidence 45789999999999 99999999999999999999999988999999999999999999999966 99999
Q ss_pred cCeEEEEEEeccCC
Q 027685 115 LGRELTVVFAEENR 128 (220)
Q Consensus 115 ~g~~l~v~~a~~~~ 128 (220)
.|+.|.|.++....
T Consensus 80 ~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 80 DGRVVEPKRAVSRE 93 (196)
T ss_dssp TTEECEEEECCC--
T ss_pred CCEEeeeecccCcc
Confidence 99999999987643
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.3e-16 Score=119.63 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceE-EEEEeCCHHHHHHHHHhhCCceecC-
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGF-GFVQYIDPADAADAKYHMDGYLLLG- 116 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Al~~l~g~~i~g- 116 (220)
.|||+||++. +++++|.++|++||+|..|.|+.. .|| |||+|.+.++|+.||+.|||..|.|
T Consensus 27 ~l~V~NL~~~----------vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 27 LLSIQNPLYP----------ITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp EEEEESCCSC----------CCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred EEEEcCcCCC----------CCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 3679999999 999999999999999999998642 376 9999999999999999999999988
Q ss_pred -eEEEEEEeccCC
Q 027685 117 -RELTVVFAEENR 128 (220)
Q Consensus 117 -~~l~v~~a~~~~ 128 (220)
..|.|++|++..
T Consensus 91 ~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 91 CCTLKIEYARPTR 103 (124)
T ss_dssp BSEEEEECCSCSC
T ss_pred CeEEEEEEecCCc
Confidence 699999998765
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.8e-16 Score=123.56 Aligned_cols=80 Identities=31% Similarity=0.491 Sum_probs=75.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.. +++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++|+..|||..|
T Consensus 87 ~~~~~l~v~nl~~~----------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 87 IKDTNLYVTNLPRT----------ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTTCEEEEESCCTT----------CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCCEEEeCCCCC----------CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 44689999999999 99999999999999999999999988899999999999999999999999999999
Q ss_pred cC--eEEEEEEe
Q 027685 115 LG--RELTVVFA 124 (220)
Q Consensus 115 ~g--~~l~v~~a 124 (220)
.| .+|.|.||
T Consensus 157 ~g~~~~l~V~~A 168 (168)
T 1b7f_A 157 EGGSQPLSVRLA 168 (168)
T ss_dssp TTCSSCCEEEEC
T ss_pred cCCCeEEEEEeC
Confidence 88 99999986
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.2e-16 Score=129.62 Aligned_cols=82 Identities=27% Similarity=0.389 Sum_probs=74.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|++||+.||+..|.|
T Consensus 28 ~~~l~V~nLp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 28 MSRVYVGSIYYE----------LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HTEEEEECCCTT----------CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred CCEEEEECCCCC----------CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 579999999999 9999999999999999999999998889999999999999999999999999999999
Q ss_pred eEEEEEEeccCC
Q 027685 117 RELTVVFAEENR 128 (220)
Q Consensus 117 ~~l~v~~a~~~~ 128 (220)
+.|.|.++....
T Consensus 98 ~~l~v~~~~~~~ 109 (216)
T 2qfj_A 98 RNIKVGRPSNIG 109 (216)
T ss_dssp CCCEEECCSCCG
T ss_pred eeEEEecCCCcc
Confidence 999998876543
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=1.7e-16 Score=119.57 Aligned_cols=77 Identities=29% Similarity=0.422 Sum_probs=70.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|| + +++++|+++|++||.|..|.|. ..+|||||+|.+.++|++||+.|||..|
T Consensus 37 ~~~~~lfVgnl--~----------~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 98 (121)
T 2bz2_A 37 RKGNTLYVYGE--D----------MTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV 98 (121)
T ss_dssp CCCCEEEEECS--S----------CCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEcCC--C----------CCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45789999995 7 8999999999999999999986 4589999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
+|+.|.|+++.+...
T Consensus 99 ~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 99 ESVQLKVNIARKQPM 113 (121)
T ss_dssp SSCBCEEEECCSSCC
T ss_pred CCeEEEEEEeCCCCC
Confidence 999999999987643
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=114.03 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=65.5
Q ss_pred CCCe-EEEccCCCCCccccccCCCCCHHH----HHHHhcCC-CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 36 LPTS-LLVRNLRHDSFSTKTYKSICRPED----LRGPFGQF-GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 36 ~~~~-l~V~~Lp~~~~~~~~~~~~~te~~----L~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
+..| |||.|||+. +++++ |.++|.+| |+|..| ++ |+|||+|.+.++|++|++.|
T Consensus 7 p~~T~lYV~NL~~~----------~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 7 GCHTLLYVYNLPAN----------KDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRM 66 (96)
T ss_dssp CSSEEEEEESCCTT----------SCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHH
T ss_pred CcceEEEEeCCCCc----------CCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHh
Confidence 3445 999999999 99988 55899999 599887 23 99999999999999999999
Q ss_pred CCceecCeEEEEEEeccCCC
Q 027685 110 DGYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 110 ~g~~i~g~~l~v~~a~~~~~ 129 (220)
||..|.|++|.|.||+....
T Consensus 67 ~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 67 ENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TTCCSSSSCCEEESSCCSCC
T ss_pred cCCccCCceEEEEecCCCcc
Confidence 99999999999999987654
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.2e-16 Score=121.62 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=74.0
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
.+|||+|||.+ +++++|.++|++||.|..|.|+.+. ++..+|||||+|.+.++|++||..|||..|.|.
T Consensus 1 R~l~V~nlp~~----------~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (166)
T 3md3_A 1 RVLYVGNLDKA----------ITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENN 69 (166)
T ss_dssp CEEEEEEEETT----------CCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEECCCCCc----------CCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC
Confidence 48999999999 9999999999999999999999886 467899999999999999999999999999999
Q ss_pred EEEEEEeccCC
Q 027685 118 ELTVVFAEENR 128 (220)
Q Consensus 118 ~l~v~~a~~~~ 128 (220)
.|.|.++....
T Consensus 70 ~i~v~~~~~~~ 80 (166)
T 3md3_A 70 IVKINWAFQSQ 80 (166)
T ss_dssp ECEEEECCCCC
T ss_pred eeEEEEcCCCC
Confidence 99999987654
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.6e-16 Score=111.81 Aligned_cols=72 Identities=19% Similarity=0.376 Sum_probs=66.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC----C-------ceEEEEecccCCCCCcceEEEEEeCCHHHHH
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAA 103 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 103 (220)
...++|||+|||++ +++++|+++|.+| | .|..|.++.+ +|||||+|.+.++|+
T Consensus 4 ~~~~~l~V~nLp~~----------~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~ 67 (87)
T 2hzc_A 4 GSARRLYVGNIPFG----------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETT 67 (87)
T ss_dssp GGGGEEEEESCCTT----------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHH
Confidence 34789999999999 9999999999999 8 8999999854 799999999999999
Q ss_pred HHHHhhCCceecCeEEEEEE
Q 027685 104 DAKYHMDGYLLLGRELTVVF 123 (220)
Q Consensus 104 ~Al~~l~g~~i~g~~l~v~~ 123 (220)
+|| .|||..|+|+.|.|+.
T Consensus 68 ~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 68 QAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHG-GGTTCEETTEECEEEC
T ss_pred HHH-hcCCCEECCeEEEEeC
Confidence 999 9999999999999873
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=112.78 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=66.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+
T Consensus 3 ~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~ 65 (88)
T 1wf0_A 3 SGSSGVFVGRCTGD----------MTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLII 65 (88)
T ss_dssp SCCCEEEEESCCSS----------SCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEE
T ss_pred CCCcEEEEeCCCCC----------CCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--Ccee
Confidence 34789999999999 999999999999999999999864 589999999999999865322 3456
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|..|.|.++.++..
T Consensus 66 ~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 66 KGISVHISNAEPKHN 80 (88)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred CCEEEEEEecCCCCC
Confidence 999999999887543
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.4e-16 Score=121.58 Aligned_cols=79 Identities=29% Similarity=0.445 Sum_probs=74.2
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||.. +++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++|++.|||..|.
T Consensus 87 ~~~~l~v~nl~~~----------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 87 RDANLYVSGLPKT----------MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp TTCEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEECCCCCc----------CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4678999999999 999999999999999999999999888999999999999999999999999999999
Q ss_pred CeE--EEEEEe
Q 027685 116 GRE--LTVVFA 124 (220)
Q Consensus 116 g~~--l~v~~a 124 (220)
|+. |.|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 965 888876
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=7.6e-16 Score=113.38 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=72.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCC-CCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYT-GEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+..+|+|.||.... .+...++++|+++|++||.|..|.|+.++.+ +..+|||||+|.+.++|++|++.|||..
T Consensus 6 ~~s~~l~l~Nm~~~~-----~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAG-----EVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp SCCSEEEEESSSCSC-----CC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEcCCChH-----HhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 457799999996310 0011378999999999999999999987543 6789999999999999999999999999
Q ss_pred ecCeEEEEEEecc
Q 027685 114 LLGRELTVVFAEE 126 (220)
Q Consensus 114 i~g~~l~v~~a~~ 126 (220)
|+|+.|.|+++..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999875
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=5.8e-16 Score=121.31 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=73.0
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||.. +++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|++||+.|||..+.
T Consensus 94 ~~~~l~v~nl~~~----------~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 94 EDRKLFIGMISKK----------CTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp GGSEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred CCCeEEEcCCCCc----------CCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 4679999999999 9999999999999999999999885 5889999999999999999999999998766
Q ss_pred ---CeEEEEEEec
Q 027685 116 ---GRELTVVFAE 125 (220)
Q Consensus 116 ---g~~l~v~~a~ 125 (220)
+++|.|.||.
T Consensus 163 ~g~~~~l~V~~ad 175 (175)
T 3nmr_A 163 EGCSSPMVVKFAD 175 (175)
T ss_dssp TTCSSCCEEEECC
T ss_pred CCCCCCeEEEecC
Confidence 4899999974
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1.3e-15 Score=129.03 Aligned_cols=83 Identities=23% Similarity=0.486 Sum_probs=75.7
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHH----HHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLR----GPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
+..+.++|||+|||++ +++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|++||+.
T Consensus 5 ~~~~~~~l~V~nlp~~----------~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEK----------IKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred CCCCCCEEEEeCCCCC----------CCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHH
Confidence 3456889999999999 9999966 8999999999999885 678899999999999999999999
Q ss_pred hCCceecCeEEEEEEeccCC
Q 027685 109 MDGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 109 l~g~~i~g~~l~v~~a~~~~ 128 (220)
|||..|.|+.|.|+|+....
T Consensus 72 l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 72 MQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred hcCCeeCCcEEEEEEeccCc
Confidence 99999999999999997644
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=8.1e-16 Score=120.49 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=74.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCC--CcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTG--EPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
.++|||+|||++ +++++|.++|.+||+|..|.|+.+..++ ..+|||||+|.+.++|++||+.|++..+
T Consensus 3 ~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 3 AIKMFVGQVPRT----------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp CEEEEEESCCTT----------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 679999999999 9999999999999999999999988776 7899999999999999999999999887
Q ss_pred c---CeEEEEEEeccCC
Q 027685 115 L---GRELTVVFAEENR 128 (220)
Q Consensus 115 ~---g~~l~v~~a~~~~ 128 (220)
. +..|.|.++....
T Consensus 73 ~~~~~~~~~~~~~~~~~ 89 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEK 89 (175)
T ss_dssp CTTCSSCCEEEECGGGC
T ss_pred ccCCccceEEccccccc
Confidence 6 6778888876544
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=9.1e-16 Score=120.81 Aligned_cols=78 Identities=19% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.. +++++|.++|.+||.|..+ ..++.++|||||+|.+.++|++||..|||..|
T Consensus 97 ~~~~~l~v~nlp~~----------~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 97 RAARTLLAKNLSFN----------ITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp GGGGEEEEESCCSS----------CCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ccCCEEEEeCCCCC----------CCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34689999999999 9999999999999998766 35778899999999999999999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
+|+.|.|.||.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999999864
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=5.5e-16 Score=129.89 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=70.9
Q ss_pred CCCCCeEEEccCCCCCccccccCCCC---------CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSIC---------RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~---------te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
....++|||+||+.. + ++++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.
T Consensus 131 ~~~~rtLfVgnL~~~----------~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~ 194 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGA----------LNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEF 194 (240)
T ss_dssp CCCCCEEEEECTTGG----------GTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHH
T ss_pred ccCCceeecCCCChh----------hhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHH
Confidence 345789999999998 7 79999999999999999999853 8999999999999999
Q ss_pred HHHhhCCcee------------cCeEEEEEEeccCC
Q 027685 105 AKYHMDGYLL------------LGRELTVVFAEENR 128 (220)
Q Consensus 105 Al~~l~g~~i------------~g~~l~v~~a~~~~ 128 (220)
||+.|+|..| .|..|.|.||+...
T Consensus 195 A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 195 AKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999999 89999999998654
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.8e-15 Score=122.81 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=72.0
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..++ ..|+|
T Consensus 109 ~~~l~V~nLp~~----------~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G 176 (193)
T 2voo_A 109 NRSVYIKGFPTD----------ATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKE 176 (193)
T ss_dssp HTEEEEECCCTT----------CCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETT
T ss_pred cCEEEecCCCCc----------CCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECC
Confidence 478999999999 9999999999999999999999875 48899999999999999999997654 59999
Q ss_pred eEEEEEEeccC
Q 027685 117 RELTVVFAEEN 127 (220)
Q Consensus 117 ~~l~v~~a~~~ 127 (220)
+.|.|.++..-
T Consensus 177 r~l~V~~~~~y 187 (193)
T 2voo_A 177 TDLLILFKDDY 187 (193)
T ss_dssp EECEEEETTTC
T ss_pred EEEEEEEhHHH
Confidence 99999987653
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=8.6e-16 Score=119.76 Aligned_cols=78 Identities=26% Similarity=0.501 Sum_probs=72.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
.++|||+|||++ +|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|++||+. +..|+|
T Consensus 3 ~~~l~v~nLp~~----------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g 70 (167)
T 2cjk_A 3 SCKMFIGGLNWD----------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG 70 (167)
T ss_dssp GGEEEECSCCTT----------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC
Confidence 679999999999 99999999999999999999999988999999999999999999999974 678999
Q ss_pred eEEEEEEecc
Q 027685 117 RELTVVFAEE 126 (220)
Q Consensus 117 ~~l~v~~a~~ 126 (220)
+.|.|.++.+
T Consensus 71 ~~i~v~~~~~ 80 (167)
T 2cjk_A 71 KVIDPKRAIP 80 (167)
T ss_dssp EECCCEECCC
T ss_pred eEcccccccc
Confidence 9999988764
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.5e-15 Score=108.72 Aligned_cols=90 Identities=24% Similarity=0.377 Sum_probs=68.9
Q ss_pred CCCCeEEEccCCCCC-ccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDS-FSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~-~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
.+.++|+|.||.... |......-..++++|+++|.+||.|..|.|+ +. .++|||||+|.+.++|++||+.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 447899999995440 0000000001258999999999999999663 32 478999999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|+|+.|.|+++.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999998754
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=5.1e-15 Score=125.51 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=78.8
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
..++|||+|||+. +++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||..|+|..|+
T Consensus 94 ~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 94 TDALLCVANLPPS----------LTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp CSCEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCCc----------CCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4679999999999 999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|.++.+..
T Consensus 164 g~~i~v~~a~~~~ 176 (284)
T 3smz_A 164 PRTLYVHWTDAGQ 176 (284)
T ss_dssp TEECEEEECCGGG
T ss_pred CcEEEEEECCCCC
Confidence 9999999998654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=1.6e-15 Score=125.37 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=73.3
Q ss_pred CCCCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
+..++|||+|||+ + +++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|++||+.|||..
T Consensus 32 ~~~~~l~V~nLp~~~----------~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 32 AGNSVLLVSNLNPER----------VTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHK 96 (229)
T ss_dssp CCCSEEEEESCCTTT----------CCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEeCCCccc----------CCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCe
Confidence 4578999999999 9 9999999999999999999999764 7899999999999999999999999
Q ss_pred ecCeEEEEEEeccCC
Q 027685 114 LLGRELTVVFAEENR 128 (220)
Q Consensus 114 i~g~~l~v~~a~~~~ 128 (220)
|.|+.|.|.++....
T Consensus 97 ~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 97 LHGKPIRITLSKHQN 111 (229)
T ss_dssp CSSSBCEEECCSCCC
T ss_pred ECCeEEEEEEecCcc
Confidence 999999999997653
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4.2e-15 Score=125.99 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=78.5
Q ss_pred CCCCeEEEccCCCCCccccccCCCC-CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSIC-RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~-te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|||+|||.. + ++++|.++|.+||.|..|.|+.+. +|.++|||||+|.+.++|++||..|||..
T Consensus 182 ~~~~~l~v~nlp~~----------~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 182 LHSRCLCVDRLPPG----------FNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp TSCSEEEEECCCTT----------CCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCccEEEEecCCcc----------cCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 45789999999999 7 899999999999999999998876 78899999999999999999999999999
Q ss_pred ecCeEEEEEEeccCCCC
Q 027685 114 LLGRELTVVFAEENRKK 130 (220)
Q Consensus 114 i~g~~l~v~~a~~~~~~ 130 (220)
|+|+.|.|.|+.++...
T Consensus 251 ~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 251 LGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp ETTEECEEEECCSSSCH
T ss_pred cCCeEEEEEEecCCCcc
Confidence 99999999999876543
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=4.4e-15 Score=125.77 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=70.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||.. +++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|
T Consensus 205 ~~~~~l~v~nl~~~----------~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 205 PPNHILFLTNLPEE----------TNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred CCCCEEEEeCCCCc----------CCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEe
Confidence 34688999999999 9999999999999999999998643 58999999999999999999999999
Q ss_pred c-CeEEEEEEec
Q 027685 115 L-GRELTVVFAE 125 (220)
Q Consensus 115 ~-g~~l~v~~a~ 125 (220)
. |+.|+|+|++
T Consensus 270 ~~g~~l~v~~ak 281 (282)
T 3pgw_A 270 TQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEEEec
Confidence 9 9999999986
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=6.5e-15 Score=125.32 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCC-CCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYY-TGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
...++|||+|||... +++++|.++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|++|| .|||..
T Consensus 208 ~~~~~l~v~nlp~~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 208 LEGREIMIRNLSTEL---------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp CTTTEEEEEEECTTT---------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred CCCceEEEECCCccc---------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 457899999999873 69999999999999999999998875 5899999999999999999999 999999
Q ss_pred ecCeEEEEEEeccC
Q 027685 114 LLGRELTVVFAEEN 127 (220)
Q Consensus 114 i~g~~l~v~~a~~~ 127 (220)
|+|+.|.|.||.++
T Consensus 278 ~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 278 LGNREISVSLADKK 291 (292)
T ss_dssp ETTEEEEEEECCCC
T ss_pred ECCcEEEEEEecCC
Confidence 99999999999865
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=121.08 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=72.1
Q ss_pred CCeEEEccCCC-CCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 37 PTSLLVRNLRH-DSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~-~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
.++|||+|||+ . +++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|++||..|||..|.
T Consensus 3 ~~~l~v~nlp~~~----------~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (198)
T 1qm9_A 3 NSVLLVSNLNPER----------VTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH 67 (198)
T ss_dssp CCEEEEECCCSSS----------CCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCS
T ss_pred CcEEEEeCCCccc----------CCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeec
Confidence 57999999999 9 9999999999999999999999764 789999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 027685 116 GRELTVVFAEENR 128 (220)
Q Consensus 116 g~~l~v~~a~~~~ 128 (220)
|+.|.|.++....
T Consensus 68 g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 68 GKPIRITLSKHQN 80 (198)
T ss_dssp SCCCEEEECCCCS
T ss_pred CeEEEEEEecCCC
Confidence 9999999998654
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=6.1e-15 Score=120.62 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCce--EEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRL--KDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
++..+|||+|||++ +++++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|++||..|||.
T Consensus 121 ~p~~~l~v~NLp~~----------~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 121 HPSNVLHFFNAPLE----------VTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp CCCSEEEEEEECTT----------CCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcceEEEeCCCCC----------CCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 34678999999999 9999999999999999 889888764 455799999999999999999999999
Q ss_pred eecCe----EEEEEEe
Q 027685 113 LLLGR----ELTVVFA 124 (220)
Q Consensus 113 ~i~g~----~l~v~~a 124 (220)
+|.|. ++.|++|
T Consensus 189 ~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 189 QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECCSSSSSCEECEEE
T ss_pred CccCCCCCcceEEEec
Confidence 99886 5777765
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.5e-14 Score=106.34 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCCeEEEccC--CCCCccccccC-CCCCHHHHHHHhcCCCceEEEEecccCCC--CCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 36 LPTSLLVRNL--RHDSFSTKTYK-SICRPEDLRGPFGQFGRLKDIYLPRDYYT--GEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 36 ~~~~l~V~~L--p~~~~~~~~~~-~~~te~~L~~~f~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
+...|.|.|+ |.+. .... -...+++|+++|++||.|..|.|+.+..+ +..+|||||+|.+.++|++|++.||
T Consensus 4 ps~vl~L~Nm~~~~~l---~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEEL---LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSEEEEESSCCGGGS---SSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCHHHc---cChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 4668889987 3330 0000 01134789999999999999999987654 3578999999999999999999999
Q ss_pred CceecCeEEEEEEeccC
Q 027685 111 GYLLLGRELTVVFAEEN 127 (220)
Q Consensus 111 g~~i~g~~l~v~~a~~~ 127 (220)
|..|+|+.|.|.++...
T Consensus 81 G~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDPD 97 (105)
T ss_dssp TCEETTEECEEEEECHH
T ss_pred CCEeCCCEEEEEEeCHH
Confidence 99999999999998753
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=118.37 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
++.++|||+|||.. +++++|.++|.+|| .|..|.|+.+ .+|||||+|.+.++|++||..|||..
T Consensus 118 ~~~~~l~v~nl~~~----------~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~ 182 (198)
T 1qm9_A 118 PPSATLHLSNIPPS----------VSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD 182 (198)
T ss_dssp CCCCEEEECCCCTT----------CCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSC
T ss_pred CCccEEEEeCCCCC----------CCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCc
Confidence 45789999999999 99999999999999 9999999753 27899999999999999999999999
Q ss_pred ec-CeEEEEEEeccC
Q 027685 114 LL-GRELTVVFAEEN 127 (220)
Q Consensus 114 i~-g~~l~v~~a~~~ 127 (220)
|+ |+.|.|.|++++
T Consensus 183 ~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 183 LGENHHLRVSFSKST 197 (198)
T ss_dssp CSSCCSCCEEEECCC
T ss_pred cCCCCeEEEEeeccc
Confidence 99 999999999864
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.1e-15 Score=120.24 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=72.8
Q ss_pred CCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 33 GRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 33 ~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.....++|||+|||++ +++++|+++|.+||.|.. .++.+..++..+|||||+|.+.++|++|| .|||.
T Consensus 9 ~~~~~~~l~V~nLp~~----------~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 76 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPN----------KSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGL 76 (175)
T ss_dssp SCSSSEEEEEECCCTT----------SCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGE
T ss_pred CCCCCcEEEEeCCCCC----------CCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCC
Confidence 3456889999999999 999999999999998766 33444456788999999999999999999 59999
Q ss_pred eecCeEEEEEEeccCC
Q 027685 113 LLLGRELTVVFAEENR 128 (220)
Q Consensus 113 ~i~g~~l~v~~a~~~~ 128 (220)
.|.|+.|.|.++.+..
T Consensus 77 ~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 77 KVFGNEIKLEKPKGRD 92 (175)
T ss_dssp EETTEEEEEECCCCSS
T ss_pred EeCCeEEEEecCCCcc
Confidence 9999999999988654
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.3e-14 Score=119.95 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
++.++|||+|||.. +++++|.++|.+|| .|..|.|+.+ .+|||||+|.+.++|++||..|||..
T Consensus 149 ~~~~~l~V~nlp~~----------~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~ 213 (229)
T 2adc_A 149 PPSATLHLSNIPPS----------VSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD 213 (229)
T ss_dssp CSCSEEEEECCCTT----------CCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEeCCCcc----------CCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCc
Confidence 44789999999999 99999999999999 9999999642 27899999999999999999999999
Q ss_pred ec-CeEEEEEEeccC
Q 027685 114 LL-GRELTVVFAEEN 127 (220)
Q Consensus 114 i~-g~~l~v~~a~~~ 127 (220)
|. |+.|.|.|+++.
T Consensus 214 ~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 214 LGENHHLRVSFSKST 228 (229)
T ss_dssp SSSSCBCEEEECSSC
T ss_pred cCCCCeEEEEEecCC
Confidence 99 999999999864
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2e-14 Score=121.07 Aligned_cols=76 Identities=34% Similarity=0.583 Sum_probs=70.8
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
...++|||+|||++ +|+++|.++|.+||.|..|.|..+ +|||||+|.+.++|+.||..|||..|
T Consensus 20 ~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 20 TQRCRLFVGNLPTD----------ITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp CGGGEEEEESCCTT----------CCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCC----------CCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 44679999999999 999999999999999999999744 79999999999999999999999999
Q ss_pred cCeEEEEEEecc
Q 027685 115 LGRELTVVFAEE 126 (220)
Q Consensus 115 ~g~~l~v~~a~~ 126 (220)
.|+.|.|.++.+
T Consensus 84 ~g~~l~v~~a~~ 95 (261)
T 3sde_A 84 KSRPLRIRFATH 95 (261)
T ss_dssp TTEECEEEECCC
T ss_pred CCceeEeeeccc
Confidence 999999999864
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4e-15 Score=109.26 Aligned_cols=66 Identities=11% Similarity=0.282 Sum_probs=58.8
Q ss_pred CCHHHHHHHh------------cCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 59 CRPEDLRGPF------------GQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 59 ~te~~L~~~f------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
+++++|.++| ++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|+|+.
T Consensus 27 ~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 27 VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 6777666555 999999999999875 36889999999999999999999999999999999999863
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=1.7e-14 Score=122.72 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=71.0
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCC-ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFG-RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
..++|||+|||+. +++++|.++|.+|| .|..|.|+.+.. +..+|||||+|.+.++|++||..|||..|
T Consensus 116 ~~~~l~v~nlp~~----------~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 116 TECTLWMTNFPPS----------YTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp CSCEEEEECCCTT----------CCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCC----------CCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3789999999999 99999999999999 999999998764 67899999999999999999999999999
Q ss_pred cCeEEEEEEeccCCC
Q 027685 115 LGRELTVVFAEENRK 129 (220)
Q Consensus 115 ~g~~l~v~~a~~~~~ 129 (220)
.|+.|.|.++.+...
T Consensus 185 ~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEK 199 (292)
T ss_dssp TTEECEEEECCCC--
T ss_pred CCcEEEEEECCCCcc
Confidence 999999999986543
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=4.5e-14 Score=106.03 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCC----CCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYY----TGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
+..+|+|.|+-.. .-+..-.+++|+++|++||.|..|.|+.+.. ++..+|||||+|.+.++|++|++.|||
T Consensus 19 ps~vl~L~Nm~~~-----~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDP-----KDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEESCSCG-----GGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCH-----HHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 4678999998321 0000124689999999999999999998754 345679999999999999999999999
Q ss_pred ceecCeEEEEEEecc
Q 027685 112 YLLLGRELTVVFAEE 126 (220)
Q Consensus 112 ~~i~g~~l~v~~a~~ 126 (220)
..|+|+.|.|.|+..
T Consensus 94 r~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCcEEEEEEcCh
Confidence 999999999999865
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=3.7e-14 Score=110.89 Aligned_cols=75 Identities=17% Similarity=0.362 Sum_probs=67.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC----C-------ceEEEEecccCCCCCcceEEEEEeCCHHHHHHH
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADA 105 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 105 (220)
.++|||+|||++ +|+++|.++|.+| | .|..+.+.. .+|||||+|.+.++|++|
T Consensus 4 ~~~l~V~nLp~~----------~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A 67 (172)
T 2g4b_A 4 ARRLYVGNIPFG----------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQA 67 (172)
T ss_dssp GGEEEEESCCTT----------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHH
T ss_pred ccEEEEcCCCcc----------cCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHH
Confidence 579999999999 9999999999999 6 777777764 389999999999999999
Q ss_pred HHhhCCceecCeEEEEEEeccCC
Q 027685 106 KYHMDGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 106 l~~l~g~~i~g~~l~v~~a~~~~ 128 (220)
| .|||..|.|+.|.|.++....
T Consensus 68 ~-~~~~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 68 M-AFDGIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp G-GGTTCEETTEECEEECCSSCC
T ss_pred H-HhCCcEecCceeeecCCcccC
Confidence 9 899999999999999876543
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=4.3e-14 Score=119.08 Aligned_cols=80 Identities=30% Similarity=0.368 Sum_probs=73.0
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC-Cceec
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD-GYLLL 115 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~-g~~i~ 115 (220)
.++|||+|||.. +|+++|.++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|| +..+.
T Consensus 96 ~~~l~v~nl~~~----------~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 96 GAALTVKNLSPV----------VSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp SSEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred CCcccccCCCCC----------CCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 679999999999 999999999999999999999988 588999999999999999999999995 45554
Q ss_pred ---CeEEEEEEeccC
Q 027685 116 ---GRELTVVFAEEN 127 (220)
Q Consensus 116 ---g~~l~v~~a~~~ 127 (220)
+++|.|.++...
T Consensus 165 ~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 165 TTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSCCBCEEEECCCE
T ss_pred cCCCceEEEeecccc
Confidence 999999998764
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=4.3e-14 Score=112.97 Aligned_cols=76 Identities=17% Similarity=0.370 Sum_probs=67.1
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC----C-------ceEEEEecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF----G-------RLKDIYLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
..++|||+|||++ +++++|.++|.+| | .|..+.+. ..+|||||+|.+.++|++
T Consensus 3 ~~~~l~V~nLp~~----------~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~ 66 (198)
T 2yh0_A 3 MARRLYVGNIPFG----------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQ 66 (198)
T ss_dssp -CCEEEEESCCTT----------CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHH
T ss_pred ceeEEEEcCCCCC----------CCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHH
Confidence 3689999999999 9999999999999 5 56666664 448999999999999999
Q ss_pred HHHhhCCceecCeEEEEEEeccCC
Q 027685 105 AKYHMDGYLLLGRELTVVFAEENR 128 (220)
Q Consensus 105 Al~~l~g~~i~g~~l~v~~a~~~~ 128 (220)
|| .|||..|.|+.|.|.++....
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCCC
T ss_pred HH-HhcCCEEcCceEEEeCCCCCC
Confidence 99 899999999999999987653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.7e-13 Score=97.59 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=57.4
Q ss_pred CCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEeccCCC
Q 027685 58 ICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEENRK 129 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~~~~ 129 (220)
.+++++|+++|.+||+|..|.|+. ..+|||||+|.+.++|+.||+.+++ +.|+.|.|+|+.+...
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 489999999999999999999982 6689999999999999999988554 6799999999887653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.7e-13 Score=120.33 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=65.1
Q ss_pred CCCCeEEEcc--CCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 35 DLPTSLLVRN--LRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 35 ~~~~~l~V~~--Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.+..+|||+| |++. +|+++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||.
T Consensus 16 ~ps~~l~VgN~gl~~~----------~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 16 YATQSLVVANGGLGNG----------VSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SCCSEEEEETCSGGGT----------CCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCCCCC----------CCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 5577999999 5788 99999999999999999988864 3799999999999999999999999
Q ss_pred eec---Ce--EEEEEEec
Q 027685 113 LLL---GR--ELTVVFAE 125 (220)
Q Consensus 113 ~i~---g~--~l~v~~a~ 125 (220)
++. |. .|.|.|+.
T Consensus 80 ~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 80 EVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EEECTTSCEEECEEEECS
T ss_pred ccccccCCceEEEEEEee
Confidence 873 34 67777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=1.8e-12 Score=96.62 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
+...|.|.|+=...-.+......-.+++|+++|++||.|..|.|+.+. .+|||||+|.+.++|++|++.|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 355788888743200000000012246899999999999999997652 4899999999999999999999999999
Q ss_pred CeEEEEEEecc
Q 027685 116 GRELTVVFAEE 126 (220)
Q Consensus 116 g~~l~v~~a~~ 126 (220)
|+.|.|+|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=87.40 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=62.9
Q ss_pred CCCCeEEEccCCC----CCccccccCCCCCH---HHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH
Q 027685 35 DLPTSLLVRNLRH----DSFSTKTYKSICRP---EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 35 ~~~~~l~V~~Lp~----~~~~~~~~~~~~te---~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 107 (220)
++..||+|.-++. ++ ..+ .+|.+.|.+||+|..+.|+.+ .+||+|.+.+.|.+||+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~---------fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNF---------FDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS 67 (91)
T ss_dssp CSSCEEEEEEECSSTTTCS---------CCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG
T ss_pred CCCCeEEEEeccCcccccc---------CCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh
Confidence 3467888887762 31 232 579999999999999999976 38999999999999997
Q ss_pred hhCCceecCeEEEEEEeccC
Q 027685 108 HMDGYLLLGRELTVVFAEEN 127 (220)
Q Consensus 108 ~l~g~~i~g~~l~v~~a~~~ 127 (220)
|||..|+|+.|+|+++.+.
T Consensus 68 -mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 68 -LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp -GTTCEETTEEEEEEECCCS
T ss_pred -cCCeEeCCeEEEEEeCCCC
Confidence 9999999999999998864
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.2e-11 Score=90.69 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=70.7
Q ss_pred CCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC-HHHHHHHHHh
Q 027685 30 GGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID-PADAADAKYH 108 (220)
Q Consensus 30 ~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Al~~ 108 (220)
|.-.-..++.|+|+||+... +++++|+++|.+||+|.+|.|+.+. ..|||.|.+ ..+|+.|+..
T Consensus 11 ~~~~~~~G~il~v~~l~~~~---------~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ 75 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQ---------TCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKD 75 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSS---------CCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHH
T ss_pred CcccccCCeEEEEecCCCCc---------CCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHH
Confidence 34445678999999999985 7899999999999999999999774 369999999 8999999999
Q ss_pred hC--CceecCeEEEEEEecc
Q 027685 109 MD--GYLLLGRELTVVFAEE 126 (220)
Q Consensus 109 l~--g~~i~g~~l~v~~a~~ 126 (220)
|| +.+|.|..+++++...
T Consensus 76 ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 76 ANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp TTTSCBCTTSSSEEEEECCH
T ss_pred hhcCCcEEeCcEEEEEECCC
Confidence 95 7789999999987653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.1e-10 Score=83.61 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCCCeEEEccCCCC-----CccccccCCCCCH---HHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 35 DLPTSLLVRNLRHD-----SFSTKTYKSICRP---EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~-----~~~~~~~~~~~te---~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
++..||+|.-++.. + ..+ .+|.+.|.+||+|..|.|+.+. +||+|.+.+.|.+||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~---------fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI 75 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNE---------FPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVL 75 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHS---------CCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHH
T ss_pred CCCCeEEEEecCCccccccc---------CCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHH
Confidence 44679999888632 1 232 5689999999999999999762 999999999999999
Q ss_pred HhhCCceecCeEEEEEEec
Q 027685 107 YHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 107 ~~l~g~~i~g~~l~v~~a~ 125 (220)
+ |||.+|+|+.|+|++..
T Consensus 76 ~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 76 D-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp H-GGGSEETTEEEEEECCC
T ss_pred h-cCCeeeCCeEEEEeccC
Confidence 8 99999999999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=5.6e-10 Score=91.48 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=60.8
Q ss_pred CCHHHHHHHhcCCCceEEEEeccc----CCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEecc
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRD----YYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAEE 126 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~~ 126 (220)
-.+++|.+.|.+||.|..|.|+.+ ..++..+|++||+|.+.++|++|+..|||..|+|+.|.|.|+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 456789999999999999999854 34558899999999999999999999999999999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=7e-08 Score=70.58 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCC-----CceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQF-----GRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
+...+|-|-|||-. ++...|..+++++ |.|..|.++.| -+-|+|+|.+...|-+|.-.|
T Consensus 19 ~~~rtiaL~~ipDt----------vndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL 82 (117)
T 2l9w_A 19 ELETLICLFPLSDK----------VSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMIL 82 (117)
T ss_dssp TTTSCEEEECCCTT----------CCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCC----------CCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhc
Confidence 45789999999999 9999999999999 99999999977 467999999999999999999
Q ss_pred CCceecCeEEEEEE
Q 027685 110 DGYLLLGRELTVVF 123 (220)
Q Consensus 110 ~g~~i~g~~l~v~~ 123 (220)
+|.+|.|++|.|.-
T Consensus 83 ~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 83 NGSQFQGKVIRSGT 96 (117)
T ss_dssp SSEEETTEEEEEEC
T ss_pred CCeeecCeEEEecC
Confidence 99999999999864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=2.3e-06 Score=62.03 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=65.4
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
+.+++|+|.||+.+-| ...--.+.++++|..|+++....+... -.=..|.|.+.++|.+|-..||+..|
T Consensus 3 ~~pntLiitnl~~~vF-----~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f 71 (104)
T 1wey_A 3 SGSSGLIACVANDDVF-----SESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEF 71 (104)
T ss_dssp SCCCEEEEECCCGGGG-----STTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred CCCceEEEecCCHHHc-----CCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhcccee
Confidence 5789999999988721 111112567899999998887776643 23568999999999999999999999
Q ss_pred cCeEEEEEEeccC
Q 027685 115 LGRELTVVFAEEN 127 (220)
Q Consensus 115 ~g~~l~v~~a~~~ 127 (220)
.|..|+|.++.+.
T Consensus 72 ~g~~~r~YFgq~~ 84 (104)
T 1wey_A 72 LGKEMKLYFAQTL 84 (104)
T ss_dssp TTEECEEECCCCS
T ss_pred cCceeEEEecCCC
Confidence 9999999998844
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.19 E-value=1.6e-05 Score=56.47 Aligned_cols=80 Identities=15% Similarity=0.180 Sum_probs=64.2
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCC--cceEEEEEeCCHHHHHHHHHhhCCceec
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGE--PRGFGFVQYIDPADAADAKYHMDGYLLL 115 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~a~~Al~~l~g~~i~ 115 (220)
++|.|.+||+. +||+++++.+..+.++....++....+.. ...-|||.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~----------LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPT----------LTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTT----------CCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCC----------CCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 68999999999 99999999999998887777765544433 3456899999999999999999999864
Q ss_pred C-----eEEEEEEeccC
Q 027685 116 G-----RELTVVFAEEN 127 (220)
Q Consensus 116 g-----~~l~v~~a~~~ 127 (220)
+ ....|++|.-+
T Consensus 72 D~kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 72 DNKGQEYPAIVEFAPFQ 88 (91)
T ss_dssp CTTCCEEECEEEECSSC
T ss_pred cCCCCEeeeEEEEcCCC
Confidence 3 24467777644
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.2e-05 Score=56.77 Aligned_cols=73 Identities=22% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcC-----CCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-----FGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
...++|.|.|||.. +.++.|.-+|+. -|+|..|+... +-|+|+|.+.+.|+.+|+.
T Consensus 6 ~~~~~I~V~~lPp~----------~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k- 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPA----------VPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ- 66 (104)
T ss_dssp CCCCEEEEESCCTT----------SCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-
T ss_pred cCccEEEEECCCCC----------CChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-
Confidence 45789999999999 999999999987 26888888762 5789999999999999854
Q ss_pred CCceecCeEEEEEEecc
Q 027685 110 DGYLLLGRELTVVFAEE 126 (220)
Q Consensus 110 ~g~~i~g~~l~v~~a~~ 126 (220)
..+.|++..|.|....+
T Consensus 67 ~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 67 ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp SCCBSSSSBCEEEECCC
T ss_pred CcceecCeEEEEEcCCC
Confidence 46789999999866443
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=4.6e-05 Score=56.59 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 34 RDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 34 ~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
....+.|.|.++|+. ....|..+|++||+|...... ....+-.|.|.+..+|++||.. ||+.
T Consensus 21 ~~~~~wVtVFGFp~~-----------~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~i 82 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQA-----------SASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRI 82 (119)
T ss_dssp CGGGGEEEEECCCGG-----------GHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCE
T ss_pred CCCCCEEEEECCCHH-----------HHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeE
Confidence 344778999999998 567788999999999988773 2256899999999999999955 9999
Q ss_pred ecC-eEEEEEEe
Q 027685 114 LLG-RELTVVFA 124 (220)
Q Consensus 114 i~g-~~l~v~~a 124 (220)
|+| ..|-|...
T Consensus 83 i~g~~mIGV~p~ 94 (119)
T 1wwh_A 83 FGESIMIGVKPC 94 (119)
T ss_dssp ETTTEECEEEEC
T ss_pred ecCCEEEEEEEC
Confidence 985 66666664
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.73 E-value=0.00025 Score=50.70 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=60.3
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCc--ceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEP--RGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
-.-+|.|..||+. +||+++.+.+..+-++....++....+.++ ..-|||.|.+.+++....+.++|..
T Consensus 8 ~~~KvVIRrLPP~----------Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 8 HSHMVVIRRLPPG----------LTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCCEEEECCCSC----------SCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred cceeEEEeCCCCC----------CCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 3568999999999 999999988887656554444443333332 2458999999999999999999998
Q ss_pred ecC-----eEEEEEEecc
Q 027685 114 LLG-----RELTVVFAEE 126 (220)
Q Consensus 114 i~g-----~~l~v~~a~~ 126 (220)
+.+ .+..|++|.-
T Consensus 78 F~D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 78 FLDSKGLEYPAVVEFAPF 95 (97)
T ss_dssp EECTTCCEEEEEEEECCC
T ss_pred EEeCCCCEeeeEEEecCC
Confidence 643 2456777753
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.53 E-value=0.00013 Score=55.01 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=56.8
Q ss_pred CCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEE-EEeccc------------CCCC-CcceEEEEEeCCHHH
Q 027685 36 LPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKD-IYLPRD------------YYTG-EPRGFGFVQYIDPAD 101 (220)
Q Consensus 36 ~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~-v~i~~~------------~~~g-~~~g~afV~f~~~~~ 101 (220)
..+.|.|.++|+. ....+.+.|++||.|.+ +.+... .... ....+..|+|++..+
T Consensus 6 ~e~~VtVFGFp~~-----------~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~ 74 (132)
T 3p3d_A 6 GELAILVFGYPET-----------MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPAS 74 (132)
T ss_dssp --CEEEEECCCGG-----------GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHH
T ss_pred CceEEEEEecCHH-----------HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHH
Confidence 3567899999887 66678888999999875 222210 0000 124678999999999
Q ss_pred HHHHHHhhCCceecCeEEEEEEec
Q 027685 102 AADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 102 a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
|++||.. ||..|+|..|=|....
T Consensus 75 A~rAL~~-NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 75 AVDALLE-NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHTT-TTCEETTEECEEEECC
T ss_pred HHHHHHh-CCeEeCcEEEEEEECC
Confidence 9999955 9999999988887764
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.35 E-value=0.0007 Score=48.33 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=44.3
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
..++| ++|++ +...||.++|..||.| .|.++.| ..|||.|.+.+.|..||+.+.
T Consensus 17 HVf~l-~FP~e----------wKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKE----------WKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTT----------CCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChh----------hhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 99999 9999999999999954 3666644 479999999999999998763
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.0005 Score=49.24 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=44.0
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhC
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMD 110 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~ 110 (220)
.++| ++|++ +...||.++|..||. ..|.++.| ..|||.|.+.+.|..||..+.
T Consensus 8 V~~l-~FP~e----------wKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKE----------WKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTT----------CCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChh----------hhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3455 99999 999999999999994 44666644 479999999999999998775
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=58.82 Aligned_cols=56 Identities=9% Similarity=0.261 Sum_probs=41.9
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
..+|+|. .|.. +++.+|.++|++||.|..+.+-.+. ..||+|||.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~----------~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEK----------ISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC-------------CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCC----------CCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 3679996 7888 9999999999999999999887542 47999999999999877644
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.34 E-value=0.0017 Score=49.26 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=36.4
Q ss_pred CCcceEEEEEeCCHHHHHHHHHhh-CCceecCeEEEEEEecc
Q 027685 86 GEPRGFGFVQYIDPADAADAKYHM-DGYLLLGRELTVVFAEE 126 (220)
Q Consensus 86 g~~~g~afV~f~~~~~a~~Al~~l-~g~~i~g~~l~v~~a~~ 126 (220)
...+|+++|+|.+.++|++|++.| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 466899999999999999999999 9999999 999988764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.06 E-value=0.0051 Score=46.76 Aligned_cols=34 Identities=15% Similarity=-0.016 Sum_probs=27.2
Q ss_pred EEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 77 IYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 77 v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
+.|+.+.. ..+|||||+|.+.++|++||..+++.
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhhccc
Confidence 45555532 57999999999999999999888754
No 221
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.16 E-value=0.32 Score=32.25 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=39.9
Q ss_pred CCHHHHHHHhcCCC-----ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEEec
Q 027685 59 CRPEDLRGPFGQFG-----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVFAE 125 (220)
Q Consensus 59 ~te~~L~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~a~ 125 (220)
+...+|..++..-+ .|-.|.|. ..|.||+... +.|+.++..|++..+.|+.|.|+.+.
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 67777777776543 45677776 3488998875 55778889999999999999988764
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.71 E-value=0.67 Score=42.25 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=43.1
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
|++-.+|.. +...+|.++|+.||.| .|.++. ...|||.|.+.+.|..++++++.
T Consensus 442 vl~v~f~~~----------~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVTFPKE----------WKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEECCTT----------CCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCC----------CCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 444458888 8899999999999964 455543 34799999999999999998864
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=89.37 E-value=2.1 Score=29.91 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=46.1
Q ss_pred CCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 35 DLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 35 ~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
...|-|.|-|+|.. +-..++.-.....|---.|.++ .|-|.|.|.+.++..-||..|
T Consensus 10 kqnclikiinipqg----------tlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQG----------TLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTT----------CCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCC----------ceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 45788999999999 8888777667777766667766 456999999999999898776
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=85.93 E-value=1.3 Score=39.49 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 027685 100 ADAADAKYH 108 (220)
Q Consensus 100 ~~a~~Al~~ 108 (220)
++.+.|..+
T Consensus 152 ~~~e~A~~A 160 (437)
T 3pgw_S 152 EHERDMHSA 160 (437)
T ss_pred ccHHHHHHH
Confidence 333333333
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=73.46 E-value=14 Score=28.70 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=39.9
Q ss_pred CCeEEEccCCCCCccccccC-CCCCHHHHHHHh--cCCCceEEEEecccCCCCCcceEEEEEeC-CHHHHHHHH
Q 027685 37 PTSLLVRNLRHDSFSTKTYK-SICRPEDLRGPF--GQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAK 106 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~-~~~te~~L~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al 106 (220)
|-++.|.|+|... .+... .+....+|.+.| ..|..+....+... ....|+|+|+|. +..-...|+
T Consensus 12 PwmgIl~N~~t~~--~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 12 PWKGIVVNIPTTK--AQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp SCEEEEECCCCEE--CTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSSHHHHHHHH
T ss_pred CCEEEEEeccccc--cCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCChHHHHHHH
Confidence 4567777888731 11111 245668899977 89988764444422 245789999997 444445555
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=72.52 E-value=9.6 Score=24.00 Aligned_cols=54 Identities=9% Similarity=-0.082 Sum_probs=41.5
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
.++.|.++... .-...|+..+.. ..|..+.+-.. .+-+.|+|.+.++...+|..
T Consensus 7 ~~~~v~gm~C~----------~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCH----------HCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCG----------GGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCH----------HHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 46889999998 788889999988 77877776532 56778888866666777765
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=63.15 E-value=18 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=27.7
Q ss_pred eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 74 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 74 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
|..|.++. ..+||.||++...++...+|..+.|..
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCce
Confidence 66666654 369999999999999988988777753
No 228
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=61.93 E-value=25 Score=21.75 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=40.4
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
++.|.++... .-...|+..+.....|..+.+... .+-+.|+|. +.++...+|..+
T Consensus 5 ~~~v~gm~C~----------~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 5 QVGVTGMTCA----------ACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEECCCSH----------HHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCH----------HHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5778888887 677889999998877777766533 456788884 566777777653
No 229
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=53.71 E-value=17 Score=22.21 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=38.6
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC---CHHHHHHHHHh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYH 108 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~ 108 (220)
.++.|.++... .-...|...+.....|..+.+... .+-+.|+|. +.++...+|..
T Consensus 4 ~~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCT----------SCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSH----------HHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecH----------HHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888887 677889999998877877766543 446778774 44556666654
No 230
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=51.22 E-value=61 Score=23.32 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=39.1
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
..+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+..|.+
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 77 DYERFKSYIQTLPNIEFCYRI----AGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp CHHHHHHHHHTCTTEEEEEEE----ESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhcChhhheeeee----eCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 356788888899999999876 345567888999999999999988765
No 231
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=49.51 E-value=12 Score=26.39 Aligned_cols=89 Identities=13% Similarity=-0.040 Sum_probs=44.5
Q ss_pred CCCCCCCCCCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 29 YGGRGRDLPTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 29 ~~~~~~~~~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
.|...-++..+|.|.--....-|...+...+++++|..++...-.+..+.|.+-...+. -|...+..+.+.||+.
T Consensus 6 ~~~~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD-----~V~i~Sq~E~eEAlkv 80 (101)
T 1wj6_A 6 SGPHSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKM 80 (101)
T ss_dssp CCCCSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSC-----EECCCSHHHHHHHHHH
T ss_pred CCccccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-----EEEEecHHHHHHHHHH
Confidence 34445555666654322111001111223599999999987522233333322111221 3556678888888863
Q ss_pred hCCceecCeEEEEEEec
Q 027685 109 MDGYLLLGRELTVVFAE 125 (220)
Q Consensus 109 l~g~~i~g~~l~v~~a~ 125 (220)
. .-.|..|.+.+.+
T Consensus 81 a---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 81 A---VKQGNQLQMQVHE 94 (101)
T ss_dssp H---HHHTSEEEEECCB
T ss_pred h---ccCCCEEEEEEee
Confidence 1 2235557776654
No 232
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=49.49 E-value=37 Score=19.76 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=36.3
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC---CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~l 109 (220)
++.|.++... .-...|+..+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 4 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCN----------HCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCS----------HHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccH----------HHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4566777776 567788898988866777766532 456777875 345555666543
No 233
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=47.49 E-value=42 Score=19.83 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.7
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC---HHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Al~~l 109 (220)
++.|.++... .....|...+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCA----------ACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSH----------HHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccH----------HHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 5678888776 567778888988877877776533 4567788863 34445555543
No 234
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.70 E-value=4 Score=30.82 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC
Q 027685 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI 97 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 97 (220)
+|+.++|...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677777777654332 2789999865
No 235
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=44.94 E-value=58 Score=20.74 Aligned_cols=44 Identities=7% Similarity=-0.052 Sum_probs=36.6
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 107 (220)
..+++.+.+..+-+|..|..+ +|...-.+.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVV----YGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEEC----SSSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEE----eccCCEEEEEEECCHHHHHHHHH
Confidence 457888899999999999887 55666778899999999988874
No 236
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=43.92 E-value=63 Score=20.86 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=36.8
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~ 107 (220)
..+++.+.+..+-+|..|..+ +|...-.+.|.+.+.++.+..+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~v----tG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVV----YGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEEC----BSSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEE----cccCCEEEEEEECCHHHHHHHHH
Confidence 457888889999999999887 55666788899999999998875
No 237
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=43.67 E-value=59 Score=20.47 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=40.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
..++.|.++... .....|...+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 10 ~~~~~v~gm~C~----------~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCH----------SCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTC----------SSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccH----------HHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346888899888 677778999988877887776533 456788885 345566666553
No 238
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=43.63 E-value=49 Score=19.53 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=37.4
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC---HHHHHHHHHh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID---PADAADAKYH 108 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~a~~Al~~ 108 (220)
.++.|.++... .-...|...+.....|..+.+... .+.+.|+|.. .++...+|..
T Consensus 2 ~~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 2 THLKITGMTCD----------SCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CCEEEESSCST----------HHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCcccH----------HHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888877 667788888888777777766533 4567777763 4555566654
No 239
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=49.33 E-value=5 Score=28.59 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCHHHHHHHhcCCCceEEEEecccCCCCCcceEE--EEEeCCHHHHHHHHHhhCCceecC
Q 027685 59 CRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFG--FVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..+++|..|..+.+ +..+.+.....+|+ ..|. +-.|.+.++|..|+..|....-..
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk-~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 45677788777776 44455543322232 2333 347899999999998886544333
No 240
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=42.68 E-value=45 Score=21.71 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=39.5
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
.+|.|.++.+. .....|...+...-.|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 5 ~~l~v~Gm~C~----------~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCK----------SCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHH----------HHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCH----------HHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888777 667789999998877877776543 456788885 345566666554
No 241
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=41.90 E-value=53 Score=19.44 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=36.6
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~ 108 (220)
++.|.++... .....|...+...-.|..+.+-.. .+.+.|+|. +.++...+|..
T Consensus 8 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 8 TLQVEGMSCG----------HCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEECCCSH----------HHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEECCccCH----------HHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888776 566778888888766777766532 456777775 34555666655
No 242
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.58 E-value=54 Score=19.10 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=37.7
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~ 108 (220)
++.|.++... .....|...+.....|..+.+-.. .+.+.|+|. +.++...++..
T Consensus 3 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCN----------HCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSS----------SHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCH----------HHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888887 677888898988867777766532 456778885 34555566654
No 243
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=40.51 E-value=59 Score=19.84 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=37.5
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
++.|.++... .....|...+.....|..+.+-.. .+.+.|+|. +.++...+|..+
T Consensus 6 ~~~v~gm~C~----------~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCA----------SCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGC----------SHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCH----------HHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778888887 677889999988877776655422 456778885 345556666554
No 244
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=40.45 E-value=85 Score=21.33 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=40.4
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 109 (220)
.+|.|.++... .....|...+...-.|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 10 ~~l~v~Gm~C~----------~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCT----------SCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGG----------GTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCH----------HHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778899888 788889999998877877776533 4567888863 45556666553
No 245
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=39.85 E-value=87 Score=22.63 Aligned_cols=48 Identities=6% Similarity=0.155 Sum_probs=38.7
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
..+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....++.|..
T Consensus 79 ~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 79 KYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp CHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 567888999999999999886 456667888999999999888765543
No 246
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=38.53 E-value=64 Score=19.40 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=37.3
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
++.|.++... .....|...+...-.|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 5 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCN----------SCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSH----------HHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCH----------HHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5667777776 566778888888777777766533 456778885 345556666553
No 247
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=38.09 E-value=62 Score=19.11 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=38.4
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
.++.|.++... .....|...+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 5 ~~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCS----------ACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCST----------THHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcH----------HHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35777888877 677788898988877777766532 456777875 345556666553
No 248
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.96 E-value=90 Score=23.41 Aligned_cols=46 Identities=7% Similarity=0.158 Sum_probs=37.5
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
..+++.+.+..+-+|..|..+ +|...-++.|.+.+.++.+..++.|
T Consensus 99 ~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 99 KYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp CHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 567888889999999999886 4566678889999999998887554
No 249
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=36.56 E-value=72 Score=19.43 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=39.0
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHhh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 109 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 109 (220)
..++.|.++... .....|...+.....|..+.+-.. .+.+.|+|.. .++...+|..+
T Consensus 9 ~~~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCN----------SCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCST----------TTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCH----------HHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 346888899888 778888888887766665555432 4567788853 45556666554
No 250
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=36.45 E-value=97 Score=21.73 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=32.4
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
++.|.++... .-...|...+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 77 ~~~v~gm~C~----------~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCA----------ACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSS----------SHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCH----------HHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4566666666 566667777776655655544322 345667775 345555666554
No 251
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=36.31 E-value=48 Score=19.66 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=35.8
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
++.|.++... .....|...+.....|..+.+-.. .+.+.|+|. +.++...+|..+
T Consensus 6 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCN----------SCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHH----------HHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecH----------HHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5677777776 556778888887766666655432 456778885 345556666554
No 252
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=36.27 E-value=64 Score=22.57 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=26.8
Q ss_pred CCHHHHHHHhcC-CC---ceEEE-EecccCCCCCcceEEEEEeCCHHHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAADA 105 (220)
Q Consensus 59 ~te~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~A 105 (220)
++..+|++.+.+ |+ ++..| .|......|...|||+| |.+.+.|.+.
T Consensus 30 psk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 30 PSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp CCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 667777766654 33 33333 33334445667778765 7777766554
No 253
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=34.92 E-value=77 Score=22.41 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=26.5
Q ss_pred CCHHHHHHHhcC-CC---ceEEE-EecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 59 ~te~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
++..+|++.+.+ |+ ++..| .|......|...|||.| |.+.+.|.+
T Consensus 39 psk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 39 PSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 666776666654 33 33333 34444445667788866 777777664
No 254
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=34.65 E-value=73 Score=18.94 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=38.7
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHh
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 108 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 108 (220)
..++.|.++... .....|...+.....|..+.+-.. .+.+.|+|.. .++...+|..
T Consensus 5 ~~~~~v~gm~C~----------~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCA----------SCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTT----------THHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccH----------HHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346888999888 777889999988877877776533 4567788863 2334455544
No 255
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=34.26 E-value=73 Score=18.77 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=36.0
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC---CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI---DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~a~~Al~~l 109 (220)
++.|.++... .....|...+.....|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 5 ~~~v~gm~C~----------~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCS----------ACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSH----------HHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecH----------HHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5677777776 566778888888777776665432 456777775 345556666554
No 256
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=33.35 E-value=73 Score=22.34 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=26.2
Q ss_pred CCHHHHHHHhcC-CC---ceEEE-EecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 59 ~te~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
++..+|++.+.+ |+ ++..| .|......|...|||.| |.+.+.|.+
T Consensus 30 psk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 30 PSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 667776666654 33 33333 34444445667788866 777776653
No 257
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=33.34 E-value=79 Score=18.92 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=38.1
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC--HHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID--PADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~--~~~a~~Al~~l 109 (220)
++.|.++... .....|...+.....|..+.+... .+.+.|+|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~----------~C~~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGMDCA----------ACARKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESCCST----------THHHHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCcCCH----------HHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 5778888887 677888899988877877766533 4567788864 34445555553
No 258
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=33.15 E-value=1.1e+02 Score=22.61 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=28.2
Q ss_pred CCCHHHHHHHhcC-CCc---eEEE-EecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 58 ICRPEDLRGPFGQ-FGR---LKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 58 ~~te~~L~~~f~~-~G~---i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
.++..+|++.+.. |+. +..| .|......|...|||.| |.+.+.|..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 3778888888865 552 2333 33334445567778776 777776653
No 259
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=31.52 E-value=1e+02 Score=22.21 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=20.2
Q ss_pred CCceEEEEecccCCCCCcceEEEEE-eCCHHHHHHHHHhhC
Q 027685 71 FGRLKDIYLPRDYYTGEPRGFGFVQ-YIDPADAADAKYHMD 110 (220)
Q Consensus 71 ~G~i~~v~i~~~~~~g~~~g~afV~-f~~~~~a~~Al~~l~ 110 (220)
+=.|..|.|..|. ....+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl----~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF----SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS----CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC----cEEEEEEEecCChhhHHHHHHHHH
Confidence 3468888888762 23445666 555554444444443
No 260
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=31.09 E-value=77 Score=18.09 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=35.4
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 108 (220)
++.|.++... .....|...+...-.|..+.+... .+.+.|+|.. .++...+|..
T Consensus 5 ~~~v~gm~C~----------~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQ----------HCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSH----------HHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccH----------HHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777776 556678888888766776665432 4567788763 4555566654
No 261
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=30.78 E-value=89 Score=21.12 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=16.5
Q ss_pred cceEEEEEeCCHHHHHHHHH
Q 027685 88 PRGFGFVQYIDPADAADAKY 107 (220)
Q Consensus 88 ~~g~afV~f~~~~~a~~Al~ 107 (220)
.....+|+|.+.+.|.++.+
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 46678999999999987764
No 262
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=30.75 E-value=29 Score=24.44 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCHHHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 59 CRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 59 ~te~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
+.-++|+.... .||.-.++.+..+ -..|-..+.+|..+||+.|+-.
T Consensus 28 v~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 28 VKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp CCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC
Confidence 77777766654 5787777766522 3678899999999999987644
No 263
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=30.48 E-value=87 Score=18.52 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=38.1
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
.++.|.++... .....|...+...-.|..+.+... .+.+.|+|. +.++...+|..+
T Consensus 8 ~~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCA----------ACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCST----------THHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccH----------HHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35788888887 667778888888766776665432 456778875 345555666553
No 264
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=29.69 E-value=1.1e+02 Score=24.09 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=23.6
Q ss_pred CcceEEEEEeCCHHHHHHHHHhhCCcee
Q 027685 87 EPRGFGFVQYIDPADAADAKYHMDGYLL 114 (220)
Q Consensus 87 ~~~g~afV~f~~~~~a~~Al~~l~g~~i 114 (220)
..+||-|||=....++..||+.|.+...
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 3589999999999999999988777543
No 265
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=28.66 E-value=1.1e+02 Score=21.52 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.9
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH-HhhCC
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMDG 111 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al-~~l~g 111 (220)
..+++.+.+..+.+|..|..+ +|...-++.|.+.+.++.+..+ +.|..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 456777888889999988765 4565677889999999999888 55543
No 266
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=28.51 E-value=79 Score=22.07 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=33.3
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
.++.|.++... .-...|+..+.....|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~----------~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCA----------SCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSH----------HHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCH----------HHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 35667777666 556667777776655655555432 345667775 345555666554
No 267
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.18 E-value=1.1e+02 Score=20.29 Aligned_cols=54 Identities=7% Similarity=0.104 Sum_probs=36.3
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC-CHHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~l 109 (220)
+|.|. +... .-...|+..+...-.|..+.+-.. .+.+.|+|. +.++...+|+.+
T Consensus 22 ~l~V~-m~C~----------~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 22 EFAVQ-MTCQ----------SCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEC-CCSH----------HHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECH----------HHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHh
Confidence 46676 7666 566789999998877777776543 345667774 556666676553
No 268
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.17 E-value=79 Score=21.54 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=33.5
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcC-CC----ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQ-FG----RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~-~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
|.+..+|.. ++-++|.+.+.. |+ ..-.++++-+ .| -+|++.+.++.+.||..+
T Consensus 17 i~~~~v~~~----------i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPS----------ISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTT----------CCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCC----------CCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHH
Confidence 556667777 888877665543 22 2223444422 23 368999999999999743
No 269
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.69 E-value=76 Score=22.07 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCHHHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 59 CRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 59 ~te~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
+.-++|+.... .||...++.++.+ --.|-..+.+|..+||+.|+-
T Consensus 40 v~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 40 VKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp CCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 77777777665 5888888877632 357888999999999988753
No 270
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=27.21 E-value=1.1e+02 Score=22.80 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCceEEEEeccc-----C----------CCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 62 EDLRGPFGQFGRLKDIYLPRD-----Y----------YTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~-----~----------~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
+...++|..||.+..|.-..+ . ..+..--|.+|+|.+.+...++..+
T Consensus 48 ~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 48 AKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 345678999998765543322 1 1223345799999999988887743
No 271
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=27.16 E-value=46 Score=19.80 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=32.4
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~ 108 (220)
++.|.++... .-...|...+... .|..+.+-.. .+.+.|+|...++...+|..
T Consensus 4 ~~~v~gm~C~----------~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCN----------HCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSH----------HHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcH----------HHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 4666677666 5566677777766 5665655432 45677888765444455544
No 272
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.32 E-value=1.2e+02 Score=22.80 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=26.7
Q ss_pred CCHHHHHHHhcC-CC---ceEEE-EecccCCCCCcceEEEEEeCCHHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG---RLKDI-YLPRDYYTGEPRGFGFVQYIDPADAAD 104 (220)
Q Consensus 59 ~te~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~a~~ 104 (220)
++..+|.+.+.. |+ ++..| .|......|...|||+| |.+.+.|..
T Consensus 33 pSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 33 ASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 667777777665 43 23333 33334444567788876 777777654
No 273
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=26.21 E-value=64 Score=22.02 Aligned_cols=58 Identities=14% Similarity=-0.021 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCeEEEEEE
Q 027685 58 ICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGRELTVVF 123 (220)
Q Consensus 58 ~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~~l~v~~ 123 (220)
.+++++|..++...-.+..+.|..-...+. -|...+..+.+.|++.. .-.|..|.+.+
T Consensus 27 ~~tweel~~mvk~~f~L~~~~ikY~DEenD-----~v~i~Sq~E~eEAlkva---~k~~n~L~m~v 84 (87)
T 2bkf_A 27 NTTWADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKMA---VKQGNQLQMQV 84 (87)
T ss_dssp GCCHHHHHHHHHHHHTCSSEEEEEECTTSC-----EEEECSHHHHHHHHHHH---HHTTTEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCceEEEEEcCCCC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEE
Confidence 489999999987522233333333222222 35666788888887632 12244455554
No 274
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=26.04 E-value=1.2e+02 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 62 EDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 62 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
+.+.+.+..+-+|..|..+ +|...-++.|.+.+.++....+..+
T Consensus 82 ~~~~~~l~~~p~V~~~~~~----~G~~d~~~~v~~~~~~~l~~~l~~l 125 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSV----AGEASYVLLVRVASARALEDLLQRI 125 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEE----SSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEe----ECCCCEEEEEEECCHHHHHHHHHHH
Confidence 6788888899999998876 4455667889999999998887655
No 275
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=25.94 E-value=1.1e+02 Score=18.33 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=34.4
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC-CHHHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI-DPADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~a~~Al~~ 108 (220)
++.| ++... .-...|+..+.....| .+.+-.. .+-+.|++. +.++...+|..
T Consensus 5 ~~~v-gm~C~----------~C~~~i~~~l~~~~gV-~v~v~~~------~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 5 EFSV-DMTCG----------GCAEAVSRVLNKLGGV-KYDIDLP------NKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEE-CCCSH----------HHHHHHHHHHHHHCSE-EEEEETT------TTEEEEEESSCHHHHHHHHHT
T ss_pred EEEE-CcCcH----------HHHHHHHHHHHcCCCe-EEEEEcC------CCEEEEEecCCHHHHHHHHHH
Confidence 5667 77777 6677788888876666 7666543 334566664 56666777765
No 276
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=25.88 E-value=1e+02 Score=17.77 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=36.3
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYH 108 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~ 108 (220)
++.|.++... .....|...+...-.|..+.+... .+.+.|+|.. .++...++..
T Consensus 6 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 6 QMQVGGMRCA----------ACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEETCTTS----------GGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEECCccCH----------HHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5778888887 667778888888766776665432 4567777753 3445555654
No 277
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=25.22 E-value=2.1e+02 Score=21.32 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=40.8
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeC----CHHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYI----DPADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~a~~Al~~l 109 (220)
.+|.|.++... .-...|...+...-.|..+.+-.. .+.+.|+|. +.++...+|..+
T Consensus 124 ~~l~v~Gm~C~----------~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCA----------SCVHSIEGMISQLEGVQQISVSLA------EGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCST----------HHHHHHHHHGGGSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCH----------HHHHHHHHHHHcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46888898888 777889999998877877776533 456788885 345566666654
No 278
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=24.58 E-value=79 Score=20.79 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=35.5
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK 106 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al 106 (220)
..+++.+.+..+-+|..|..+ +|...-.+.|.+.+.++.+..+
T Consensus 14 ~~~~~~~~l~~~peV~~~~~v----tG~~D~ll~v~~~d~~~l~~~l 56 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSV----TGPYDLVALVRLKDVEELDDVV 56 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEE----SSSSSEEEEEEESSGGGHHHHC
T ss_pred CHHHHHHHHhcCCCeEEEEEe----ecCCCEEEEEEECCHHHHHHHH
Confidence 457788889999999999887 5566678889999999888776
No 279
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.41 E-value=1.1e+02 Score=21.99 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEe-CCHHHHHHHH-HhhC
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQY-IDPADAADAK-YHMD 110 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f-~~~~~a~~Al-~~l~ 110 (220)
.+++.+.+..+-+|..|..+ +|...-++.|.+ .+.++.+..+ +.|.
T Consensus 82 ~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~~d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 82 ADKVISEISDIEYVKSVEKG----VGRYNIIVRLLLPKDIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHHTTCTTEEEEEEE----ESSCSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeEe----cCCCCEEEEEEEcCCHHHHHHHHHHHhh
Confidence 45778888889899999887 455567788999 9999998877 4443
No 280
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=24.31 E-value=16 Score=26.42 Aligned_cols=28 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred ceEEEEEeCCHHHHHHHHHhhCCceecC
Q 027685 89 RGFGFVQYIDPADAADAKYHMDGYLLLG 116 (220)
Q Consensus 89 ~g~afV~f~~~~~a~~Al~~l~g~~i~g 116 (220)
..++|++|.+...+..||..|+|....|
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ----------------------------
T ss_pred cccccccccCCCchhhhhhhccCCCCCC
Confidence 3467888899999999999888876544
No 281
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.22 E-value=84 Score=22.03 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=25.9
Q ss_pred ceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCc
Q 027685 73 RLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGY 112 (220)
Q Consensus 73 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~ 112 (220)
.|..|..+. ..+||-|||=....++..||+.+.+.
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 355555542 35899999999999999998765443
No 282
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=24.20 E-value=1.2e+02 Score=18.16 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=35.0
Q ss_pred eEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHhh
Q 027685 39 SLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 109 (220)
Q Consensus 39 ~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 109 (220)
++.|.++... .....|...+...-.|..+.+.. ..+.+.|.|.. .++...+|..+
T Consensus 6 ~~~v~gm~C~----------~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 6 EFDIEGMTCA----------ACANRIEKRLNKIEGVANAPVNF------ALETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEESCCCH----------HHHHHHHHHHHTSTTEEECCCCS------SSSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCH----------HHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5677777776 56677888888776666555432 24567778753 44555666543
No 283
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.02 E-value=1.9e+02 Score=21.05 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
.+++.+.+..+-+|..|..+ +|...-+++|.+.+.++....+..+
T Consensus 79 ~~~~~~~l~~~peV~~~~~v----tG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRM----SGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEEC----CSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeeec----CCCCCEEEEEEECCHHHHHHHHHHH
Confidence 45677778888899999886 5566778899999999998887543
No 284
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=23.96 E-value=84 Score=21.56 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCHHHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 59 CRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 59 ~te~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
+.-++|+.-.. .||...++.++.+ --.|-..+.+|..+||+.|+-
T Consensus 24 vkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 24 VKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhcc
Confidence 77777776664 5888888877633 257888999999999988753
No 285
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.95 E-value=43 Score=21.71 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=8.4
Q ss_pred ceEEEEEeCC
Q 027685 89 RGFGFVQYID 98 (220)
Q Consensus 89 ~g~afV~f~~ 98 (220)
++.|||.|++
T Consensus 37 ~~~ClV~FeD 46 (68)
T 2e5p_A 37 REVCLVQFED 46 (68)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5689999986
No 286
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.41 E-value=77 Score=29.39 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=35.3
Q ss_pred CCHHHHHHHhc----CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhh
Q 027685 59 CRPEDLRGPFG----QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHM 109 (220)
Q Consensus 59 ~te~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l 109 (220)
.+--||..+|- .+|-|+.+.|..-+.. ....+++|.|.+.++|..|+..+
T Consensus 355 ~aGyDL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 355 STGPDIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSSCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcCHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHH
Confidence 44457778773 4788888877654321 23567889999999999888765
No 287
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.08 E-value=2.2e+02 Score=20.63 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH-hhC
Q 027685 61 PEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY-HMD 110 (220)
Q Consensus 61 e~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~-~l~ 110 (220)
.+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+. .|.
T Consensus 85 ~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 131 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFAL----TGETDYLLQAFFTDMNAFSHFVLDTLL 131 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEE----SSSCSEEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcChhhhEeeee----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 56778888889999999876 45556678899999999998873 444
No 288
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.15 E-value=69 Score=22.26 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=21.3
Q ss_pred CCHHHHHHHhcC-CC---ceEEEE-ecccCCCCCcceEEEEEeCCHHHHH
Q 027685 59 CRPEDLRGPFGQ-FG---RLKDIY-LPRDYYTGEPRGFGFVQYIDPADAA 103 (220)
Q Consensus 59 ~te~~L~~~f~~-~G---~i~~v~-i~~~~~~g~~~g~afV~f~~~~~a~ 103 (220)
++..+|++.+.+ |+ ++..|. |......|...|||+| |.+.+.|.
T Consensus 31 psk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 31 PSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 666676666654 32 222221 2222233455667755 55555444
No 289
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=21.81 E-value=2e+02 Score=22.08 Aligned_cols=49 Identities=4% Similarity=-0.161 Sum_probs=33.4
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHH--------HHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPED--------LRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID 98 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~--------L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 98 (220)
.+.=|+-.||.+ ++.++ ++++|..+|.|..+.|..+. ...-+|.|.|.+
T Consensus 70 lare~~iALP~E----------L~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~ 126 (185)
T 2ns6_A 70 LFKEVEFALPVE----------LTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISE 126 (185)
T ss_dssp CEEEEEEECCTT----------SCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECC
T ss_pred EEEEEEEECCcc----------CCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEee
Confidence 344567789999 77654 55566778888888887632 234578887764
No 290
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.72 E-value=1.2e+02 Score=22.95 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCHHHHHHHhcCCCceE---EEEecccCCCCCcceEEEE
Q 027685 59 CRPEDLRGPFGQFGRLK---DIYLPRDYYTGEPRGFGFV 94 (220)
Q Consensus 59 ~te~~L~~~f~~~G~i~---~v~i~~~~~~g~~~g~afV 94 (220)
+++++|.++-.+.|.+. .+.|..+..+|....+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 78999999999999874 5566656447888888775
No 291
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=21.71 E-value=1.7e+02 Score=18.77 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=38.8
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCC----HHHHHHHHHhh
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYID----PADAADAKYHM 109 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~a~~Al~~l 109 (220)
.++.|.++... .....|...+.....|..+.+... .+.+.|+|.. .+....+|..+
T Consensus 18 ~~~~v~gm~C~----------~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCT----------SEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTT----------TTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCH----------HHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45788899888 778888888888766776665432 4567788853 45555666554
No 292
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.50 E-value=2.3e+02 Score=20.23 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=38.0
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHH-hhC
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKY-HMD 110 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~-~l~ 110 (220)
..+++.+.+..+-+|..|..+ +|...-++.|.+.+.++....+. .+.
T Consensus 81 ~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 81 DYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp GHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred CHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 457788889999999999887 56666788899999999998873 444
No 293
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.20 E-value=1e+02 Score=26.42 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=38.4
Q ss_pred EEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCceecCe
Q 027685 40 LLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYLLLGR 117 (220)
Q Consensus 40 l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~i~g~ 117 (220)
-+||||..-. ........+.++..+||.|..+.+.. .-+|...+.+.++.++.. ++..+.++
T Consensus 17 PliGnl~~l~------~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLP------RHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CEEEEESSCT------TSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CeEcchHHhC------CCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 3588876430 00012456778888999998887742 346667788888888744 44444433
No 294
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.11 E-value=83 Score=22.18 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=33.3
Q ss_pred CCHHHHHHHhc-CCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCC
Q 027685 59 CRPEDLRGPFG-QFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDG 111 (220)
Q Consensus 59 ~te~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g 111 (220)
+.-++|+.... .||...++.++.+ --.|-..+.+|..+||+.|+-
T Consensus 51 vkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 51 VKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp CCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 77777776654 5888777777633 246788899999999988753
No 295
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=21.04 E-value=2.3e+02 Score=20.09 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=38.0
Q ss_pred CHHHHHHHhcCCCceEEEEecccCCCCCcceEEEEEeCCHHHHHHHH-HhhCC
Q 027685 60 RPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYIDPADAADAK-YHMDG 111 (220)
Q Consensus 60 te~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al-~~l~g 111 (220)
..+++.+.+..+-+|..|..+ +|...-++.|...+.++....+ +.|..
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 77 YHVELGNKLAQIPGVWGVYFV----LGDNDFIVMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp HHHHHHHHHHTSTTEEEEEEC----SSSCSEEEEEEESSHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHhcCchhhhhhhh----cCcCCEEEEEEECCHHHHHHHHHHHhcc
Confidence 456788888899999999876 4566678899999999998887 55543
No 296
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=20.93 E-value=13 Score=25.59 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred EEEEEeCC-HHHHHHHHHhhCCceecCeEEEEE
Q 027685 91 FGFVQYID-PADAADAKYHMDGYLLLGRELTVV 122 (220)
Q Consensus 91 ~afV~f~~-~~~a~~Al~~l~g~~i~g~~l~v~ 122 (220)
.|||.|.. .-.-++.|+.|+...+....|+|+
T Consensus 47 ~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~ 79 (96)
T 2f40_A 47 VAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQ 79 (96)
T ss_dssp CCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCS
T ss_pred cceEEECcccCCHHHHHHHcChhhcccccccHH
Confidence 57899963 334456667888888888777764
No 297
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.83 E-value=1.2e+02 Score=21.00 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEE
Q 027685 37 PTSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIY 78 (220)
Q Consensus 37 ~~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~ 78 (220)
+..|+|.+||.. +.-.++....-..|+.++..--.|.++.
T Consensus 41 p~av~V~GLPeg--IpFr~P~~ygi~~Le~IL~~~~~I~F~I 80 (99)
T 2dzr_A 41 PGSVIIEGLPPG--IPFRKPCTFGSQNLERILAVADKIKFTV 80 (99)
T ss_dssp SSSEEEESCCTT--CCSSCGGGSCHHHHHHHHHHTTTCEEEE
T ss_pred CCeEEEecCCCC--CcccCCCcccHHHHHHHHHhccCcEEEE
Confidence 678999999998 2333445667788999998877777654
No 298
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.38 E-value=78 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=27.4
Q ss_pred eEEEEecccCCCCCcceEEEEEeCCHHHHHHHHHhhCCce
Q 027685 74 LKDIYLPRDYYTGEPRGFGFVQYIDPADAADAKYHMDGYL 113 (220)
Q Consensus 74 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Al~~l~g~~ 113 (220)
|..|.++. ..+||.||++...++...+|..+.|..
T Consensus 33 i~~v~vp~-----~fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPS-----RVKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeec-----CCCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 55666653 369999999999999988988777763
No 299
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.37 E-value=68 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=24.0
Q ss_pred CeEEEccCCCCCccccccCCCCCHHHHHHHhcCCCceEEEEe
Q 027685 38 TSLLVRNLRHDSFSTKTYKSICRPEDLRGPFGQFGRLKDIYL 79 (220)
Q Consensus 38 ~~l~V~~Lp~~~~~~~~~~~~~te~~L~~~f~~~G~i~~v~i 79 (220)
.-+.|+|||+. ++...|..++.. ..+..+.+
T Consensus 111 ~~~iv~NlPy~----------iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYH----------IATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSS----------CCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCccc----------ccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999 999999999876 55554433
Done!