BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027686
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1
Length = 323
Score = 253 bits (646), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 156/223 (69%), Gaps = 22/223 (9%)
Query: 1 MATGNRTGVYRKKRDSLKSARAPLSSSASGS-AGPVIEMVSGSLLRSNRSSYAPLSTEDP 59
MAT NRT VYRK RD+ KSARAPLS SAS S GPVIEMVSGS RSN SSYAPL++ DP
Sbjct: 1 MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDP 60
Query: 60 GPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQHMIE 99
GPSSSDAF++G+PPAWVDD+EEI A + +FGD K +E
Sbjct: 61 GPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVE 120
Query: 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159
+LT+EITDLLR SEKRL LS G SE+SNLRKNVQ SLATDLQN SM+LR+ STYLK
Sbjct: 121 MLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKR 180
Query: 160 LQQQKEGCDGVDLEMNFNEDKYRL-EDDGFSDGGFDAHQMMKL 201
LQQQKEG D VDLE N N RL E+D GFD HQ +KL
Sbjct: 181 LQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKL 223
>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1
Length = 322
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/233 (57%), Positives = 160/233 (68%), Gaps = 29/233 (12%)
Query: 1 MATGNRTGVYRKKRDSLKSARAPLSSSA-----SGSAGPVIEMVSGSLLRSNRSSYAPLS 55
MAT NRT ++RK R+SL+S RAPLSSS+ SG GPVIEM S SLL NRS YAP+S
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGTRSGGVGPVIEMASTSLLNPNRS-YAPIS 59
Query: 56 TEDPGPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSSFGDGKQDQ 95
TEDPG SS A +VGLPPAWVD +EEI A + SFGDGK+DQ
Sbjct: 60 TEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDGKEDQ 119
Query: 96 HMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHST 155
H IE LT EIT LL+ SEK+L +LSA+G SEDSN+RKNVQ SLATDLQ SM+LRK ST
Sbjct: 120 HNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKKQST 179
Query: 156 YLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSS 208
YLK L+QQKE DG+DLEMN + ++YR E+D F D + HQM K+ + S
Sbjct: 180 YLKRLRQQKE--DGMDLEMNLSRNRYRPEEDDFGD-MLNEHQMSKIKKSEEVS 229
>sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2
Length = 331
Score = 234 bits (596), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/241 (54%), Positives = 155/241 (64%), Gaps = 36/241 (14%)
Query: 1 MATGNRTGVYRKKRDSLKSARAPLSSSASGSA-------------GPVIEMVSGSLLRSN 47
MAT NRT ++RK R+SL+S RAP+ SS+S + GPVIEM S SLL N
Sbjct: 1 MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60
Query: 48 RSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEI--------------------ANLSS 87
RS YAP+STEDPG SS +VGLPP WVD +EEI A + S
Sbjct: 61 RS-YAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPS 119
Query: 88 FGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSM 147
FGDGK+DQH IE LT E+T LL+ SEK+L +LSAAG SEDSN+RKNVQ SLATDLQN SM
Sbjct: 120 FGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSM 179
Query: 148 DLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKS 207
+LRK STYLK L+ QKE DG DLEMN N +Y+ EDD F D F HQM K+ +
Sbjct: 180 ELRKKQSTYLKRLRLQKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSEEI 237
Query: 208 S 208
S
Sbjct: 238 S 238
>sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3
Length = 326
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 61 PSSSDAFSVGLPPAWVDDAEEIA---------------------NLSSFGDGKQDQHMIE 99
P ++ + PP WVD +EI N + D +++H IE
Sbjct: 64 PEAAIGVTKRSPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIE 123
Query: 100 ILTYEITDLLRGSEKRLDKLSA----AGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHST 155
I T E+T L ++ + L + A S ++ L +NV SLA LQ S R S
Sbjct: 124 ITTQEVTQLFHRCQRAVQALPSRARRACSEQEERLLRNVVASLAQALQELSTSFRHAQSD 183
Query: 156 YLKHLQQQKE 165
YLK ++ ++E
Sbjct: 184 YLKRMKNREE 193
>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3
Length = 325
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 61 PSSSDAFSVGLPPAWVDDAEEIA---------------------NLSSFGDGKQDQHMIE 99
P ++ + PP WVD +EI N + D +++H IE
Sbjct: 64 PEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIE 123
Query: 100 ILTYEITDLLRGSEKRLDKL---SAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTY 156
I T EIT L ++ + L + A S ++ L NV SLA LQ S R S Y
Sbjct: 124 ITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGY 183
Query: 157 LKHLQQQKE 165
LK ++ ++E
Sbjct: 184 LKRMKNREE 192
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tlg2 PE=3 SV=1
Length = 301
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 85 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSS---EDSNLRKNVQHSLATD 141
L SF D + ++ I+ LT +IT + +K L A +S ++ + KN +LA+
Sbjct: 88 LPSFSDKTEQENEIQRLTIQITQDFQRCQKLLQVTKAQTNSATGSEALMAKNFLSNLASR 147
Query: 142 LQNHSMDLRKNHSTYLKHLQ 161
+Q S RK STYLK L+
Sbjct: 148 IQTESAQFRKKQSTYLKKLR 167
>sp|F4IV66|RNE_ARATH Ribonuclease E/G-like protein, chloroplastic OS=Arabidopsis
thaliana GN=RNE PE=1 SV=1
Length = 1001
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 74 AWVDDAEEIANLSSFGDGKQD----QHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSN 129
+W+DDA N + + + IE+ + D G+E L AA SSE+SN
Sbjct: 200 SWIDDAYLFPNCVTPAQSEDECTSADSAIEVPRTHLNDKQVGAESFLCDELAAFSSENSN 259
Query: 130 LRK----NVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGVDLEMNFNEDKYRLED 185
L N Q L S+ L+ + +Q E CD + +N +E ++L +
Sbjct: 260 LSALFSDNYQPIEEPWLIQESITLQHERNMQTDS-EQDVESCDDNENNLNTDEQNHQLTE 318
Query: 186 DGFSDGGF 193
DGGF
Sbjct: 319 TLLPDGGF 326
>sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TLG2 PE=1 SV=1
Length = 397
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 39/191 (20%)
Query: 9 VYRKKRDSLKSARAPLSSSASGSAGPV-------IEMVSGSLLRSNRSSYAPLSTEDPGP 61
++R + + S R + + S+G IEM + ++ + A L+ D
Sbjct: 1 MFRDRTNLFLSYRRTFPHNITFSSGKAPLGDDQDIEMGTYPMMNMSHDISARLT--DERK 58
Query: 62 SSSDAFSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEIL 101
+ + S LPP ++D A+++ + L F D D+ +IE L
Sbjct: 59 NKHENHSDALPPIFIDIAQDVDDYLLEVRRLSEQLAKVYRKNSLPGFEDKSHDEALIEDL 118
Query: 102 TYEITDLLRGSEKRLDKLSAAGSS----------EDSNLRKNVQHSLATDLQNHSMDLRK 151
++++ +L+ + +L +S E+ + N+Q A +Q S R
Sbjct: 119 SFKVIQMLQKCYAVMKRLKTIYNSQFVDGKQLSREELIILDNLQKIYAEKIQTESNKFRV 178
Query: 152 NHSTYLKHLQQ 162
+ YLK L +
Sbjct: 179 LQNNYLKFLNK 189
>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
Length = 4303
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 24 LSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDP--GPSSSDAFSVGLPPAWVDDAEE 81
LS +AS V + ++ R NR +ST P+++ A + G+ VD A E
Sbjct: 994 LSLTASNHVSNVTVNYNVTVERMNRMQGLQVSTVPAVLSPNATLALTAGV---LVDSAVE 1050
Query: 82 IANLSSFGDGKQDQHMIE 99
+A L +FGDG+Q H +
Sbjct: 1051 VAFLWTFGDGEQALHQFQ 1068
>sp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana
GN=At2g26730 PE=1 SV=1
Length = 658
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 56 TEDPGPSSSDAFSVGLPPAWVDDAEEIANLSSFGDGKQDQHMIE-----ILTYEITDLLR 110
T+ P P+ +V LPP EE+ SS G+ +++ + + ++++ DLLR
Sbjct: 292 TKQPKPAGVATRNVDLPPGASSSKEEVTGTSSGMGGETERNKLVFTEGGVYSFDLEDLLR 351
Query: 111 GSEKRLDKLSAAGS 124
S + L K S S
Sbjct: 352 ASAEVLGKGSVGTS 365
>sp|B9LUD2|AROA_HALLT Probable 3-phosphoshikimate 1-carboxyvinyltransferase OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 /
ACAM 34) GN=aroA PE=3 SV=1
Length = 453
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 82 IANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATD 141
IA L + DG E + Y+ TD + + L+KL A + E L H +D
Sbjct: 335 IAALGAVADGDTRIMNCEHVRYKETDRVSAMAEELEKLGAKTTEEPDTL---TVHGSESD 391
Query: 142 LQNHSMDLRKNHSTYL 157
L+ S+D R +H +
Sbjct: 392 LRGASVDGRADHRIVM 407
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,156,503
Number of Sequences: 539616
Number of extensions: 3495661
Number of successful extensions: 7822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7774
Number of HSP's gapped (non-prelim): 69
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)