Query 027686
Match_columns 220
No_of_seqs 154 out of 216
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0809 SNARE protein TLG2/Syn 100.0 7.2E-44 1.6E-48 315.5 13.3 193 2-212 1-217 (305)
2 PF00804 Syntaxin: Syntaxin; 98.9 7.7E-09 1.7E-13 77.3 7.5 73 72-145 2-102 (103)
3 COG5325 t-SNARE complex subuni 98.7 3.8E-08 8.3E-13 87.7 8.5 104 67-170 28-155 (283)
4 smart00503 SynN Syntaxin N-ter 98.1 3.1E-05 6.8E-10 59.4 9.6 90 72-161 3-117 (117)
5 cd00179 SynN Syntaxin N-termin 96.2 0.082 1.8E-06 42.2 10.9 77 91-167 39-122 (151)
6 PF14523 Syntaxin_2: Syntaxin- 94.9 0.63 1.4E-05 34.8 10.7 78 85-162 22-100 (102)
7 KOG0812 SNARE protein SED5/Syn 93.5 2.4 5.3E-05 38.7 13.1 65 85-152 71-142 (311)
8 cd07633 BAR_OPHN1 The Bin/Amph 72.6 16 0.00034 31.9 6.9 70 93-162 6-100 (207)
9 cd07602 BAR_RhoGAP_OPHN1-like 69.6 21 0.00045 31.1 7.1 68 93-161 6-99 (207)
10 cd07636 BAR_GRAF The Bin/Amphi 59.3 40 0.00086 29.4 6.9 70 93-162 6-100 (207)
11 PF14738 PaaSYMP: Solute carri 50.0 1.5E+02 0.0032 24.6 9.8 78 85-162 65-154 (154)
12 cd07639 BAR_ACAP1 The Bin/Amph 47.0 1.9E+02 0.0041 25.0 9.2 68 93-160 6-92 (200)
13 cd07635 BAR_GRAF2 The Bin/Amph 46.7 82 0.0018 27.4 6.8 28 93-120 6-33 (207)
14 PF05524 PEP-utilisers_N: PEP- 45.8 84 0.0018 24.1 6.2 66 93-158 32-120 (123)
15 cd07634 BAR_GAP10-like The Bin 42.8 1E+02 0.0022 26.9 6.8 56 93-148 6-82 (207)
16 cd07603 BAR_ACAPs The Bin/Amph 42.1 68 0.0015 27.5 5.6 55 93-148 6-76 (200)
17 KOG4460 Nuclear pore complex, 41.7 2E+02 0.0043 29.1 9.2 39 125-164 661-699 (741)
18 cd07637 BAR_ACAP3 The Bin/Amph 38.4 1.4E+02 0.0031 25.6 7.0 26 93-118 6-31 (200)
19 KOG0811 SNARE protein PEP12/VA 36.0 3.3E+02 0.0072 24.6 11.9 77 85-161 47-123 (269)
20 PF05227 CHASE3: CHASE3 domain 34.0 2E+02 0.0044 21.6 8.3 75 85-159 59-134 (138)
21 PF08655 DASH_Ask1: DASH compl 29.4 98 0.0021 22.2 3.8 25 93-117 3-27 (66)
22 PF14728 PHTB1_C: PTHB1 C-term 29.2 79 0.0017 29.9 4.2 39 133-171 214-253 (377)
23 cd07601 BAR_APPL The Bin/Amphi 29.0 2.4E+02 0.0052 24.6 6.9 68 93-160 6-96 (215)
24 COG2825 HlpA Outer membrane pr 29.0 3.3E+02 0.0071 22.7 7.5 34 132-165 84-118 (170)
25 PF06112 Herpes_capsid: Gammah 27.8 60 0.0013 26.9 2.8 28 138-165 24-57 (147)
26 cd07638 BAR_ACAP2 The Bin/Amph 25.8 2E+02 0.0042 24.9 5.7 68 93-160 6-92 (200)
27 cd09236 V_AnPalA_UmRIM20_like 25.1 1.1E+02 0.0024 28.2 4.4 49 69-117 54-102 (353)
28 KOG1222 Kinesin associated pro 22.6 3.3E+02 0.0072 27.4 7.2 65 98-162 255-333 (791)
29 KOG1842 FYVE finger-containing 22.5 4.5E+02 0.0097 25.9 7.9 80 67-146 265-366 (505)
30 PF07526 POX: Associated with 22.3 2.7E+02 0.0058 22.6 5.6 53 97-152 81-134 (140)
31 KOG0810 SNARE protein Syntaxin 21.0 6.5E+02 0.014 23.1 11.6 76 91-166 73-156 (297)
32 PF04803 Cor1: Cor1/Xlr/Xmr co 20.3 4.6E+02 0.01 21.1 8.1 57 100-165 43-99 (130)
No 1
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-44 Score=315.53 Aligned_cols=193 Identities=39% Similarity=0.528 Sum_probs=167.8
Q ss_pred CCCCcchHHHHHHhhhhccCCCCCCCCCCCCCcchhhhhccccccCCCCCCCCCCCCCCCCCCCCccCCCCchhHhhHHH
Q 027686 2 ATGNRTGVYRKKRDSLKSARAPLSSSASGSAGPVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEE 81 (220)
Q Consensus 2 atRnrT~~Fl~yR~~~~~~R~~~~~~~~~~~g~~ie~~~~~ll~~~~~~~~~l~~~d~~~~~~~~~~~~lpP~Wvd~~ee 81 (220)
||||||++|++||++++|||.+++...+ -+|++++. ++++.++.. |.+++.+| ++||.|||..+|
T Consensus 1 atRnrT~lF~~~Rn~~~~~r~~~~~~~~--~d~~~e~~-~~lv~~~~~-~~~~~~~d-----------~lpP~wvd~~~e 65 (305)
T KOG0809|consen 1 ATRNRTELFLLYRNNASHNRQPLGDRSG--DDPVIEMA-TSLVNEAEE-GKTVSDED-----------GLPPAWVDVAEE 65 (305)
T ss_pred CcchHHHHHHHHHhhhhhhccccccccC--cchhHHhH-hccccchhc-CCcccccc-----------CCCCcccchHHH
Confidence 7999999999999999999988743221 57888888 677765544 55555333 599999999999
Q ss_pred hhh--------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---CcchHHHHHHHHHHH
Q 027686 82 IAN--------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---SSEDSNLRKNVQHSL 138 (220)
Q Consensus 82 i~~--------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~---~~~e~~i~kNvq~sL 138 (220)
|++ +|+|+|++++|++||.+|++||++|++||+.|+.+.+.. ++.|..+++|++++|
T Consensus 66 v~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~l 145 (305)
T KOG0809|consen 66 VDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYL 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999998854 689999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhccC-CccccccccCcccCCcccCCCCCCCCCHHHHHHHHhhccccCCCc
Q 027686 139 ATDLQNHSMDLRKNHSTYLKHLQQQKEGC-DGVDLEMNFNEDKYRLEDDGFSDGGFDAHQMMKLNNCRKSSSFPE 212 (220)
Q Consensus 139 A~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~-~~~d~~~~~~~~~~~~~~~~~~d~gft~~Ql~~l~~n~~~~~e~~ 212 (220)
|.+||.+|..||++|++|||+|+++++++ .+++.. .+..+..+++++.+.+|+++|+++++.|+.++.|||
T Consensus 146 a~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~---~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE 217 (305)
T KOG0809|consen 146 ALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSL---DNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVRERE 217 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhc---cccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999998 666533 333455667788999999999999999999999997
No 2
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.88 E-value=7.7e-09 Score=77.26 Aligned_cols=73 Identities=30% Similarity=0.412 Sum_probs=62.8
Q ss_pred CchhHhhHHHhhh--------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686 72 PPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G 123 (220)
Q Consensus 72 pP~Wvd~~eei~~--------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~ 123 (220)
||.|++.+++|.+ .+.+ +++..+.+|+.+|.+|+++|+.|+..|+.|... .
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~-~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~ 80 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD-QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEP 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 7999999999999 3344 447899999999999999999999999999875 2
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 027686 124 SSEDSNLRKNVQHSLATDLQNH 145 (220)
Q Consensus 124 ~~~e~~i~kNvq~sLA~~LQ~L 145 (220)
+..+.++++|...+|+.+++++
T Consensus 81 ~~~~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 81 SSNEVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998875
No 3
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.74 E-value=3.8e-08 Score=87.69 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=88.6
Q ss_pred ccCCCCchhHhhHHHhhh--------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---
Q 027686 67 FSVGLPPAWVDDAEEIAN--------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG--- 123 (220)
Q Consensus 67 ~~~~lpP~Wvd~~eei~~--------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~--- 123 (220)
....+||.||+..-+|+. +|+|.|+++.+.+|+.|+..|++.|.+|++.++.--..-
T Consensus 28 e~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~ 107 (283)
T COG5325 28 EDDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSS 107 (283)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999988877 999999999999999999999999999999998664321
Q ss_pred -CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCcc
Q 027686 124 -SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGCDGV 170 (220)
Q Consensus 124 -~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~~~~ 170 (220)
...+.....|...+++..+|..+..||+.|..|+|++....+..+..
T Consensus 108 ~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l 155 (283)
T COG5325 108 FLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPL 155 (283)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCch
Confidence 23678888999999999999999999999999999996633332333
No 4
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=98.10 E-value=3.1e-05 Score=59.42 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=70.7
Q ss_pred CchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC------Ccc
Q 027686 72 PPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG------SSE 126 (220)
Q Consensus 72 pP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~------~~~ 126 (220)
+|.|++.+++|.. +..-+.....-..++.+..+|..+++.|...|+.+.... +..
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~ 82 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSA 82 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCH
Confidence 6789999999888 222112234556778888888888888888888887532 245
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 027686 127 DSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQ 161 (220)
Q Consensus 127 e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk 161 (220)
+.++++|...+|+.+++++...|++.|+.|..+.|
T Consensus 83 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 83 SDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999999999999999999999987653
No 5
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=96.25 E-value=0.082 Score=42.24 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=67.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC-------CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686 91 GKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG-------SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ 163 (220)
Q Consensus 91 ~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~-------~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~ 163 (220)
....-..++.+..+|.++++.+...|+.|.... ...+.++++|...+|..+++++=..|...|..|-.+.|.+
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~ 118 (151)
T cd00179 39 DPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKER 118 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999998632 2357889999999999999999999999999999998887
Q ss_pred hccC
Q 027686 164 KEGC 167 (220)
Q Consensus 164 ~~~~ 167 (220)
=.+.
T Consensus 119 i~Rq 122 (151)
T cd00179 119 IQRQ 122 (151)
T ss_pred HHHH
Confidence 7664
No 6
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=94.90 E-value=0.63 Score=34.82 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=63.0
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-CCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 027686 85 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA-GSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQ 162 (220)
Q Consensus 85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~ 162 (220)
+=+-.|..+.-..|..+..++..+++.....|+.+... .......-.+-..-.|+...+.+...|-+.|+.|..+.+.
T Consensus 22 lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 22 LGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp H-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44667788888999999999999999999999999876 4455666777888899999999999999999999988764
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=2.4 Score=38.71 Aligned_cols=65 Identities=28% Similarity=0.289 Sum_probs=44.9
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHH---HHHHHhHhh-cCC--c-chHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027686 85 LSSFGDGKQDQHMIEILTYEITDLLRGS---EKRLDKLSA-AGS--S-EDSNLRKNVQHSLATDLQNHSMDLRKN 152 (220)
Q Consensus 85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c---~~~I~~i~~-~~~--~-~e~~i~kNvq~sLA~~LQ~LS~~FRk~ 152 (220)
.+-|+|.. .+|..||.-|.+.+... ...++.|.. .|+ . .=...-+||+-.|-++|-++|..|..-
T Consensus 71 ks~f~Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~V 142 (311)
T KOG0812|consen 71 KSLFDDRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDV 142 (311)
T ss_pred cccccCcc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHH
Confidence 78888876 36888888777764444 344444443 232 1 124567899999999999999999753
No 8
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.61 E-value=16 Score=31.92 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-------------------CC--cchHHHHHHHHHHHHHHHHHHh----H
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA-------------------GS--SEDSNLRKNVQHSLATDLQNHS----M 147 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-------------------~~--~~e~~i~kNvq~sLA~~LQ~LS----~ 147 (220)
.-|.+++.+...|-++++.|..+|.....- |. -.|.+...|.-+..+.-||++- .
T Consensus 6 ~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~ 85 (207)
T cd07633 6 CYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMM 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999876430 11 1233444466677777887775 4
Q ss_pred HHHHHHHHHHHHHhh
Q 027686 148 DLRKNHSTYLKHLQQ 162 (220)
Q Consensus 148 ~FRk~Q~~YLk~Lk~ 162 (220)
-|...|...++.|++
T Consensus 86 l~d~aq~s~~~~L~~ 100 (207)
T cd07633 86 MVQNASDLLIKPLEN 100 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788887776544
No 9
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=69.60 E-value=21 Score=31.07 Aligned_cols=68 Identities=9% Similarity=0.235 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-------------------C---CcchHHHHHHHHHHHHHHHHHHhHH--
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA-------------------G---SSEDSNLRKNVQHSLATDLQNHSMD-- 148 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-------------------~---~~~e~~i~kNvq~sLA~~LQ~LS~~-- 148 (220)
..|.+++.+...|-++.+.|...|...... | +..|..| .+.-..++.-|+++...
T Consensus 6 ~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i-~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 6 EHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEI-AESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999877531 1 1223333 47888888888888654
Q ss_pred --HHHHHHHHHHHHh
Q 027686 149 --LRKNHSTYLKHLQ 161 (220)
Q Consensus 149 --FRk~Q~~YLk~Lk 161 (220)
+-..|...+..|.
T Consensus 85 ~L~~q~~~~l~~pL~ 99 (207)
T cd07602 85 RMLENAEEQLIEPLE 99 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3345555554443
No 10
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=59.30 E-value=40 Score=29.36 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-------------------C-C-cchHHHHHHHHHHHHHHHHHHhHH---
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA-------------------G-S-SEDSNLRKNVQHSLATDLQNHSMD--- 148 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-------------------~-~-~~e~~i~kNvq~sLA~~LQ~LS~~--- 148 (220)
..|.++|.+..-|.++++.|...|...... | + -.+..+..++-..++..||++...
T Consensus 6 ~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~ 85 (207)
T cd07636 6 SHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999865420 1 1 233444558889999999998754
Q ss_pred -HHHHHHHHHHHHhh
Q 027686 149 -LRKNHSTYLKHLQQ 162 (220)
Q Consensus 149 -FRk~Q~~YLk~Lk~ 162 (220)
|-..|...++.|.+
T Consensus 86 L~~qa~~~l~~~L~~ 100 (207)
T cd07636 86 MIENASEVLITPLEK 100 (207)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44557766665543
No 11
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=49.99 E-value=1.5e+02 Score=24.60 Aligned_cols=78 Identities=8% Similarity=0.105 Sum_probs=49.1
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhh------------cCCcchHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027686 85 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA------------AGSSEDSNLRKNVQHSLATDLQNHSMDLRKN 152 (220)
Q Consensus 85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~------------~~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~ 152 (220)
+|.++|....+..--.|..-=.+-+...+.-|+.|.. .....+.....-+-+.........-..+.+.
T Consensus 65 Lpp~~d~~~~~kRr~mme~~E~~EW~~RE~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki 144 (154)
T PF14738_consen 65 LPPLDDEASLEKRRKMMEEMEWKEWAFREEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKI 144 (154)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986655444333333333444445555554432 1123444445556677778888889999999
Q ss_pred HHHHHHHHhh
Q 027686 153 HSTYLKHLQQ 162 (220)
Q Consensus 153 Q~~YLk~Lk~ 162 (220)
|..|++.|++
T Consensus 145 ~~~~~r~lRK 154 (154)
T PF14738_consen 145 EKERIRALRK 154 (154)
T ss_pred HHHHHHHhcC
Confidence 9999998874
No 12
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.00 E-value=1.9e+02 Score=24.98 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc---------------CCcchHHHHHHHHHHHHHHHHHHhHHH----HHHH
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA---------------GSSEDSNLRKNVQHSLATDLQNHSMDL----RKNH 153 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~---------------~~~~e~~i~kNvq~sLA~~LQ~LS~~F----Rk~Q 153 (220)
+.|.+|+.|...|-++.+.|...+...... ....+..+..++-..++.-|+++...| +..|
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQ 85 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999888776431 001222235577777788888875443 3455
Q ss_pred HHHHHHH
Q 027686 154 STYLKHL 160 (220)
Q Consensus 154 ~~YLk~L 160 (220)
...+..|
T Consensus 86 ~~l~~~L 92 (200)
T cd07639 86 FSFKQQL 92 (200)
T ss_pred HHHHHHH
Confidence 5444443
No 13
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=46.71 E-value=82 Score=27.43 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLS 120 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~ 120 (220)
..|.+.|.+.+-|.++.+.|...|....
T Consensus 6 ~~e~~le~~~k~i~kLiK~c~~~i~a~k 33 (207)
T cd07635 6 AHEAELERTNRFIKELLKDGKNLIAATK 33 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999988765
No 14
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=45.83 E-value=84 Score=24.09 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC---------------------cchHHHH--HHHHHHHHHHHHHHhHHH
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAAGS---------------------SEDSNLR--KNVQHSLATDLQNHSMDL 149 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~~---------------------~~e~~i~--kNvq~sLA~~LQ~LS~~F 149 (220)
+-+.+|+.+..-|...-+..+.+.+.+....+ .....|. .|+..++...++.+...|
T Consensus 32 ~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~~~~~Ae~Av~~~~~~~~~~f 111 (123)
T PF05524_consen 32 DIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIREGKNAEYAVQEVIEEYIEQF 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45567777777777666666666666443210 1122222 167788888888888888
Q ss_pred HHHHHHHHH
Q 027686 150 RKNHSTYLK 158 (220)
Q Consensus 150 Rk~Q~~YLk 158 (220)
+.+...||+
T Consensus 112 ~~~~d~ylr 120 (123)
T PF05524_consen 112 EAMDDPYLR 120 (123)
T ss_dssp HTSS-HHHH
T ss_pred HhCCCHHHH
Confidence 888888886
No 15
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=42.80 E-value=1e+02 Score=26.88 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-------------------CC--cchHHHHHHHHHHHHHHHHHHhHH
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA-------------------GS--SEDSNLRKNVQHSLATDLQNHSMD 148 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~-------------------~~--~~e~~i~kNvq~sLA~~LQ~LS~~ 148 (220)
.-|.+.|...+-|-++.+.|...|...... |. -.+.....+.-..++.-|++|...
T Consensus 6 ~~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~ 82 (207)
T cd07634 6 CHEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877541 11 133334456666677777777763
No 16
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.05 E-value=68 Score=27.47 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc----------------CCcchHHHHHHHHHHHHHHHHHHhHH
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA----------------GSSEDSNLRKNVQHSLATDLQNHSMD 148 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~----------------~~~~e~~i~kNvq~sLA~~LQ~LS~~ 148 (220)
..|.+|+.|...|.++.+.|...+...... +...|.. ..++-..++.-|+++...
T Consensus 6 ~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~-i~~~l~kF~~~l~el~~~ 76 (200)
T cd07603 6 QVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSL-VQNCLNKFIQALQEMNNF 76 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHH-HHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999988754421 1123333 335555566667766544
No 17
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=2e+02 Score=29.12 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 027686 125 SEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQK 164 (220)
Q Consensus 125 ~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~ 164 (220)
+.|.....-+.++|++.|..+.+.|.| |+..+.+....-
T Consensus 661 k~Elq~~~~~~~~L~~~iET~~~~~~K-Q~~H~~~v~~al 699 (741)
T KOG4460|consen 661 KKELQLIPDQLRHLGNAIETVTMKKDK-QQQHMEKVLSAL 699 (741)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Confidence 456655555778999999999999999 555555554433
No 18
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.40 E-value=1.4e+02 Score=25.56 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDK 118 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~ 118 (220)
+.|..|+.|..++-++.+.|...|..
T Consensus 6 ~~E~~~~~le~~l~kl~K~~~~~~d~ 31 (200)
T cd07637 6 EVETDVVEIEAKLDKLVKLCSGMIEA 31 (200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888876
No 19
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.00 E-value=3.3e+02 Score=24.63 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=67.6
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 027686 85 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQ 161 (220)
Q Consensus 85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk 161 (220)
+-++.|..++-..++.....+.++.+.....|+.+.......+.+..+.....|+.....--..|-+.|+.--...|
T Consensus 47 lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek 123 (269)
T KOG0811|consen 47 LGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRLESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK 123 (269)
T ss_pred cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 66777878888889999999999999999999999886667778999999999999999999999999998777776
No 20
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=34.01 E-value=2e+02 Score=21.58 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=51.5
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC-CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027686 85 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG-SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKH 159 (220)
Q Consensus 85 ~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~-~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~ 159 (220)
..-+.|+......|+.+..-|..-+.-.+..|......+ ......+.....+.+...|..+...|+..+..+|+.
T Consensus 59 ~~l~~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~l~~ 134 (138)
T PF05227_consen 59 RQLVQDNPEQQERLDQLEELIDQWRELLEPQIALRKSGGMEAARALVNSGEGKQLMDQIRQLLEQIQAEEQRLLKQ 134 (138)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334457778888899999888888866777766665522 233444555566678889999999999888887765
No 21
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.41 E-value=98 Score=22.22 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLD 117 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~ 117 (220)
..|++|-.+=++|..-|.+|++.|.
T Consensus 3 ~ldQ~iTl~LQeID~N~s~~~~iit 27 (66)
T PF08655_consen 3 QLDQEITLLLQEIDSNFSRCHRIIT 27 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888999999999999887
No 22
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=29.23 E-value=79 Score=29.87 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC-Cccc
Q 027686 133 NVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGC-DGVD 171 (220)
Q Consensus 133 Nvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~-~~~d 171 (220)
.-...+...|...+.+||-.|+.-|.++|...-++ +.+|
T Consensus 214 ~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~ 253 (377)
T PF14728_consen 214 QELKELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLD 253 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHH
Confidence 33456889999999999999999999999988776 5443
No 23
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.99 E-value=2.4e+02 Score=24.59 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhh-----------------c--CCcchHHHHHHHHHHHHHHHHHHhHHHH---
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSA-----------------A--GSSEDSNLRKNVQHSLATDLQNHSMDLR--- 150 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~-----------------~--~~~~e~~i~kNvq~sLA~~LQ~LS~~FR--- 150 (220)
..|..+..|..-|.++++.|...+..... . +...+..+..++-...+..|++|+..+-
T Consensus 6 ~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~ 85 (215)
T cd07601 6 VFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLS 85 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999998876542 1 1122333333788889999999886543
Q ss_pred -HHHHHHHHHH
Q 027686 151 -KNHSTYLKHL 160 (220)
Q Consensus 151 -k~Q~~YLk~L 160 (220)
..|...+..|
T Consensus 86 ~q~~~~l~~pL 96 (215)
T cd07601 86 SQLADTVLHPI 96 (215)
T ss_pred HHHHHHHHHHH
Confidence 3444444433
No 24
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=28.95 E-value=3.3e+02 Score=22.73 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhhhc
Q 027686 132 KNVQHSLATDLQ-NHSMDLRKNHSTYLKHLQQQKE 165 (220)
Q Consensus 132 kNvq~sLA~~LQ-~LS~~FRk~Q~~YLk~Lk~~~~ 165 (220)
.+..+.-+...+ .+...|++.|+.|=+.+..++.
T Consensus 84 ~d~~k~e~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 118 (170)
T COG2825 84 SDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRREA 118 (170)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566 8999999999999888776654
No 25
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=27.81 E-value=60 Score=26.92 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred HHHHHHHH------hHHHHHHHHHHHHHHhhhhc
Q 027686 138 LATDLQNH------SMDLRKNHSTYLKHLQQQKE 165 (220)
Q Consensus 138 LA~~LQ~L------S~~FRk~Q~~YLk~Lk~~~~ 165 (220)
|+.+++.| ..+|+..|++||-+|-.+..
T Consensus 24 lv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~ 57 (147)
T PF06112_consen 24 LVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHC 57 (147)
T ss_pred HHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHH
Confidence 45555555 46899999999999887753
No 26
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.76 E-value=2e+02 Score=24.88 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C-------CcchHHHHHHHHHHHHHHHHHHhHHHH----HHH
Q 027686 93 QDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G-------SSEDSNLRKNVQHSLATDLQNHSMDLR----KNH 153 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~-------~~~e~~i~kNvq~sLA~~LQ~LS~~FR----k~Q 153 (220)
..|..++.|...+.++.+.|.+.+...... + ...+..+-.++-..++..|+++..... ..|
T Consensus 6 ~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~ 85 (200)
T cd07638 6 DVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQ 85 (200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999988754321 0 111222666788888888888875433 334
Q ss_pred HHHHHHH
Q 027686 154 STYLKHL 160 (220)
Q Consensus 154 ~~YLk~L 160 (220)
...+..|
T Consensus 86 ~~l~~~L 92 (200)
T cd07638 86 RSIKAQL 92 (200)
T ss_pred HHHHHHH
Confidence 4444443
No 27
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=25.09 E-value=1.1e+02 Score=28.22 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCCCchhHhhHHHhhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027686 69 VGLPPAWVDDAEEIANLSSFGDGKQDQHMIEILTYEITDLLRGSEKRLD 117 (220)
Q Consensus 69 ~~lpP~Wvd~~eei~~~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~ 117 (220)
.+|||.++..+++|..--+++.=...=..+..+...+...+..|...|.
T Consensus 54 ~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~~l~~~~~~~L~e~~~~L~ 102 (353)
T cd09236 54 LGLPPSLLRHAEEIRQEDGLERIRASLDDVARLAASDRAILEEAMDILD 102 (353)
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999995222211112223444555555555555555554
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.62 E-value=3.3e+02 Score=27.44 Aligned_cols=65 Identities=26% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh-------------cC-CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 027686 98 IEILTYEITDLLRGSEKRLDKLSA-------------AG-SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQ 162 (220)
Q Consensus 98 IE~lT~eIT~lF~~c~~~I~~i~~-------------~~-~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~ 162 (220)
=|.|..+|.++|++-...|++=.. .. +-++...++|++.-|+..|+--+...=-.=..||++|--
T Consensus 255 netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI 333 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence 456677777777777766665432 11 234455689999999999988777777777777777643
No 29
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=22.51 E-value=4.5e+02 Score=25.89 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=51.2
Q ss_pred ccCCCC-chhHhhHHHhhh--------hcCCCCc---------hhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc----CC
Q 027686 67 FSVGLP-PAWVDDAEEIAN--------LSSFGDG---------KQDQHMIEILTYEITDLLRGSEKRLDKLSAA----GS 124 (220)
Q Consensus 67 ~~~~lp-P~Wvd~~eei~~--------~p~F~D~---------~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~----~~ 124 (220)
.++..| |..|..+|-++. +|.|-|. .-.-+..+.|-..+-++.....-.-++|... .+
T Consensus 265 ~d~r~~~p~ivq~Ye~mq~~~k~v~~~~p~Y~~~l~SL~~get~~tlk~~~dLR~k~~el~~s~D~~sKkI~~l~~~p~~ 344 (505)
T KOG1842|consen 265 QDEREPSPGIVQHYEHLQVFRKEVDNLLPLYEDSLNSLKEGETTYTLKHAKDLRKKFLELCESIDGTSKKIANLPSSPPS 344 (505)
T ss_pred hhhccCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 356677 999988887776 4444331 1122334455555555554444445555443 25
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 027686 125 SEDSNLRKNVQHSLATDLQNHS 146 (220)
Q Consensus 125 ~~e~~i~kNvq~sLA~~LQ~LS 146 (220)
..|..+++||.-.-+.-||+.=
T Consensus 345 ~~E~qLkk~Irl~a~~~lqEki 366 (505)
T KOG1842|consen 345 DAEEQLKKNIRLEAKQYLQEKI 366 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999863
No 30
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=22.32 E-value=2.7e+02 Score=22.63 Aligned_cols=53 Identities=13% Similarity=0.015 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcCCcchHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 027686 97 MIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNL-RKNVQHSLATDLQNHSMDLRKN 152 (220)
Q Consensus 97 ~IE~lT~eIT~lF~~c~~~I~~i~~~~~~~e~~i-~kNvq~sLA~~LQ~LS~~FRk~ 152 (220)
..-.|-+|+.+-+++|+..|+.+...- |... .-+++---|..||.+|..||-.
T Consensus 81 KLl~mL~eVd~RY~qY~~Qmq~VvssF---e~vaG~gaA~~YtalAlqamSrhFR~L 134 (140)
T PF07526_consen 81 KLLSMLDEVDRRYRQYYDQMQAVVSSF---EAVAGLGAAAPYTALALQAMSRHFRCL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcchhhHHHHHHHHHHHHHHH
Confidence 344567889999999999999886520 0000 1144555678899999999964
No 31
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.99 E-value=6.5e+02 Score=23.05 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=59.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------CCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 027686 91 GKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------GSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQ 162 (220)
Q Consensus 91 ~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~ 162 (220)
....-++++.+..+|-+.=+..+..|+.+... +......++++=-..+..+|.++=..|+..|.+|=.+-+.
T Consensus 73 ~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~ 152 (297)
T KOG0810|consen 73 DKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKE 152 (297)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888877888888877652 2467888888888888899999999999999999877666
Q ss_pred hhcc
Q 027686 163 QKEG 166 (220)
Q Consensus 163 ~~~~ 166 (220)
+=.+
T Consensus 153 ~i~R 156 (297)
T KOG0810|consen 153 RIQR 156 (297)
T ss_pred HHHH
Confidence 5443
No 32
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=20.35 E-value=4.6e+02 Score=21.05 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 027686 100 ILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKE 165 (220)
Q Consensus 100 ~lT~eIT~lF~~c~~~I~~i~~~~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~ 165 (220)
..+..+..+|...+.-++++.. .|.++. .+..+-|.+...+|-.|+.+|+.+|.--+
T Consensus 43 ~ys~q~~~l~~qw~~D~qk~ke----~eEkl~-----n~~~qqQK~~qq~r~~q~Qrlk~iK~l~e 99 (130)
T PF04803_consen 43 EYSQQFSTLFQQWEADVQKFKE----QEEKLS-----NIFQQQQKLFQQARIVQNQRLKAIKELHE 99 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543 344443 46667788999999999999999988765
Done!