Query 027686
Match_columns 220
No_of_seqs 154 out of 216
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 99.3 1.7E-12 5.9E-17 114.0 8.4 99 69-167 40-172 (279)
2 1fio_A SSO1 protein; four heli 99.3 2.7E-12 9.4E-17 106.5 8.5 94 72-167 4-118 (196)
3 1dn1_B Syntaxin 1A, syntaxin b 98.9 1.2E-08 4.3E-13 89.3 12.3 96 69-166 27-151 (267)
4 1ez3_A Syntaxin-1A; three heli 98.9 1.8E-08 6.1E-13 78.1 11.2 93 71-163 6-125 (127)
5 1s94_A S-syntaxin; three helix 98.5 2E-07 6.9E-12 76.7 7.1 96 71-166 37-159 (180)
6 3c98_B Syntaxin-1A; protein co 96.2 0.074 2.5E-06 44.4 12.1 93 71-163 41-160 (279)
7 2dnx_A Syntaxin-12; snare, HAB 94.7 0.75 2.6E-05 35.6 12.4 93 71-163 8-121 (130)
8 1hs7_A Syntaxin VAM3; UP-and-D 73.1 25 0.00087 25.9 9.1 27 136-162 67-93 (97)
9 1jek_B ENV polyprotein; envelo 56.9 14 0.00048 22.7 3.6 24 94-117 5-28 (36)
10 1g4y_B Calcium-activated potas 40.5 49 0.0017 24.7 5.0 49 109-162 7-69 (101)
11 2z2t_D Fusion inhibitor peptid 35.5 47 0.0016 19.7 3.6 20 95-114 6-25 (36)
12 1mqs_B SED5P, integral membran 31.3 6.7 0.00023 25.8 -0.9 20 1-20 6-25 (50)
13 3vh7_B CP32M; 6-helix bundle, 31.1 53 0.0018 19.2 3.2 21 93-113 12-32 (34)
14 3vgx_D Envelope glycoprotein G 30.0 57 0.002 18.7 3.2 21 93-113 10-30 (32)
15 2v71_A Nuclear distribution pr 27.8 1.3E+02 0.0045 24.6 6.2 92 72-165 2-116 (189)
16 2x7r_B Transmembrane protein G 27.2 66 0.0023 21.8 3.6 21 94-114 11-31 (63)
17 3vie_B Sifuvirtide; 6-helix bu 22.7 1.1E+02 0.0037 18.2 3.6 21 94-114 6-26 (37)
18 3o3y_A Chimeric alpha+alpha/be 20.8 1.2E+02 0.0041 18.3 3.6 21 94-114 7-27 (40)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.34 E-value=1.7e-12 Score=114.02 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=87.5
Q ss_pred CCCCchhHhhHHHhhh---------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc-----
Q 027686 69 VGLPPAWVDDAEEIAN---------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA----- 122 (220)
Q Consensus 69 ~~lpP~Wvd~~eei~~---------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~----- 122 (220)
...+|.|++.+++|.. .|.|++.+....+|+.++.+|+++|+.|+..|+.|...
T Consensus 40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~ 119 (279)
T 2xhe_B 40 EPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ 119 (279)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999998 27777777889999999999999999999999999751
Q ss_pred -------CCcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 027686 123 -------GSSE-DSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGC 167 (220)
Q Consensus 123 -------~~~~-e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~ 167 (220)
++.. +.++++|++.+|+.+|++++..||+.|+.|++++|.+..+.
T Consensus 120 ~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~ 172 (279)
T 2xhe_B 120 QEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ 172 (279)
T ss_dssp HHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred hcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 77999999999999999999999999999999999887653
No 2
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.33 E-value=2.7e-12 Score=106.50 Aligned_cols=94 Identities=12% Similarity=0.111 Sum_probs=83.7
Q ss_pred CchhHhhHHHhhh---------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcchHHH
Q 027686 72 PPAWVDDAEEIAN---------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNL 130 (220)
Q Consensus 72 pP~Wvd~~eei~~---------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~~~~e~~i 130 (220)
||.|++.+++|.. .|.+++......+|+.++.+|+++|+.|+..|+.|.... .+.++
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~--~~~r~ 81 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG--IHDTN 81 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhhH
Confidence 8999999999988 345545567899999999999999999999999998754 24689
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 027686 131 RKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEGC 167 (220)
Q Consensus 131 ~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~~ 167 (220)
++|++.+|+.++++++..||+.|+.|++++|.+-.+.
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq 118 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ 118 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987754
No 3
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.90 E-value=1.2e-08 Score=89.28 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=83.2
Q ss_pred CCCCchhHhhHHHhhh---------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhh------
Q 027686 69 VGLPPAWVDDAEEIAN---------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSA------ 121 (220)
Q Consensus 69 ~~lpP~Wvd~~eei~~---------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~------ 121 (220)
....|.|++.+++|.. -|.++ .....+|+.++.+|+++|+.|...|+.|..
T Consensus 27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~--~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~ 104 (267)
T 1dn1_B 27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEE 104 (267)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3468999999999998 24443 367789999999999999999999999965
Q ss_pred --cCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 027686 122 --AGSSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEG 166 (220)
Q Consensus 122 --~~~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~ 166 (220)
.+++.|.++++|+..+|+.+++++...|++.|+.|.+++|.+-.|
T Consensus 105 ~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R 151 (267)
T 1dn1_B 105 GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151 (267)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235678899999999999999999999999999999999987655
No 4
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=98.88 E-value=1.8e-08 Score=78.11 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=80.9
Q ss_pred CCchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686 71 LPPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G 123 (220)
Q Consensus 71 lpP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~ 123 (220)
.+|.|++.+++|+. +..-+.......+++.++.+|+++++.|+..|+.|... +
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~ 85 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 85 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 57899999999998 43333455688899999999999999999999999752 3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686 124 SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ 163 (220)
Q Consensus 124 ~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~ 163 (220)
+..+.++++|...+|..+|+++...|+..|..|..+++.+
T Consensus 86 ~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 86 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999865
No 5
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=98.50 E-value=2e-07 Score=76.68 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=76.9
Q ss_pred CCchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686 71 LPPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G 123 (220)
Q Consensus 71 lpP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~ 123 (220)
..|.|++.+++|.. +.++.+......+|+.++.+|+++++.|...|+.|... +
T Consensus 37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~ 116 (180)
T 1s94_A 37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNK 116 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 35679999999988 66666777788999999999999999999999999852 2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 027686 124 SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKEG 166 (220)
Q Consensus 124 ~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~~ 166 (220)
++.+.++++|...+|..+++++...|+..|..|.++.|.+=.|
T Consensus 117 ~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~R 159 (180)
T 1s94_A 117 SSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKR 159 (180)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999999999988655
No 6
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=96.15 E-value=0.074 Score=44.35 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=76.4
Q ss_pred CCchhHhhHHHhhh-------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------C
Q 027686 71 LPPAWVDDAEEIAN-------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAA--------G 123 (220)
Q Consensus 71 lpP~Wvd~~eei~~-------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~--------~ 123 (220)
.-+.|...+++|.. +....+......+|+.++.+|.+++..|...++.|... .
T Consensus 41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~ 120 (279)
T 3c98_B 41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 120 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44678888888776 45556666778899999999999999999998888641 2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686 124 SSEDSNLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ 163 (220)
Q Consensus 124 ~~~e~~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~ 163 (220)
...+...+.|....||..+..+...|...|+.|...++..
T Consensus 121 ~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~e 160 (279)
T 3c98_B 121 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 160 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999776654
No 7
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.73 E-value=0.75 Score=35.62 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=75.9
Q ss_pred CCchhHhhHHHhhh------------------hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhcC---CcchHH
Q 027686 71 LPPAWVDDAEEIAN------------------LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAG---SSEDSN 129 (220)
Q Consensus 71 lpP~Wvd~~eei~~------------------~p~F~D~~~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~---~~~e~~ 129 (220)
-||.|-.....|.. +=+=.|..+.-..|-.+...++++++.+-..|+.+.... ...+.+
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r 87 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQR 87 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 47888888888866 444456778899999999999999999999999998743 334445
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 027686 130 LRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQ 163 (220)
Q Consensus 130 i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~ 163 (220)
-.+=.+-.|+...+..-..|-+.|+.|..+-|.-
T Consensus 88 ~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~ 121 (130)
T 2dnx_A 88 QQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES 121 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555688899999999999999999999887653
No 8
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=73.12 E-value=25 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 027686 136 HSLATDLQNHSMDLRKNHSTYLKHLQQ 162 (220)
Q Consensus 136 ~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~ 162 (220)
-.|+.....|...|.+.|+.|-.+-+.
T Consensus 67 eRL~~dF~~l~~~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 67 GKLSADFKNLKTKYQSLQQSYNQRKSL 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346667778888899999999877653
No 9
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=56.93 E-value=14 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 027686 94 DQHMIEILTYEITDLLRGSEKRLD 117 (220)
Q Consensus 94 eE~~IE~lT~eIT~lF~~c~~~I~ 117 (220)
=|++|+.+|..|+.++..++..-+
T Consensus 5 WereI~~~t~nIy~LLeeAq~Qq~ 28 (36)
T 1jek_B 5 WEEEIEQHEGNLSLLLREAALQVH 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999998887533
No 10
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=40.48 E-value=49 Score=24.68 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=29.9
Q ss_pred HHHHHHHHHhHhhcCCcchHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHhh
Q 027686 109 LRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQN--------------HSMDLRKNHSTYLKHLQQ 162 (220)
Q Consensus 109 F~~c~~~I~~i~~~~~~~e~~i~kNvq~sLA~~LQ~--------------LS~~FRk~Q~~YLk~Lk~ 162 (220)
|.+||+.+..+. .|.+|.+-++.+-|.-||+ .+...|+.|+.+|..+..
T Consensus 7 LtkaEKhVhnFM-----mD~qltk~~K~aAAnVLrEtWliyK~tkl~~k~d~~r~R~HQRkfL~AI~~ 69 (101)
T 1g4y_B 7 LTKAEKHVHNFM-----MDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQ 69 (101)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-----HHhHHhHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 345555555443 5789999999999999997 356789999999976543
No 11
>2z2t_D Fusion inhibitor peptide SC34EK; coiled-coil, viral protein/inhibitor complex; 2.10A {Synthetic}
Probab=35.46 E-value=47 Score=19.75 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027686 95 QHMIEILTYEITDLLRGSEK 114 (220)
Q Consensus 95 E~~IE~lT~eIT~lF~~c~~ 114 (220)
+++|..+|..|..++.+++.
T Consensus 6 ekei~n~t~~Iy~lle~sq~ 25 (36)
T 2z2t_D 6 DRKIEEYTKKIEELIKKSQE 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999988764
No 12
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=31.31 E-value=6.7 Score=25.79 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.1
Q ss_pred CCCCCcchHHHHHHhhhhcc
Q 027686 1 MATGNRTGVYRKKRDSLKSA 20 (220)
Q Consensus 1 MatRnrT~~Fl~yR~~~~~~ 20 (220)
|..||||.+|...=..+...
T Consensus 6 ~SiqDRT~EF~siv~~lqkr 25 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKR 25 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHhc
Confidence 35799999999877666543
No 13
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_D
Probab=31.13 E-value=53 Score=19.20 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 027686 93 QDQHMIEILTYEITDLLRGSE 113 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~ 113 (220)
+=+++|..+|..|..++.+++
T Consensus 12 qWekei~n~t~~Iy~lle~sq 32 (34)
T 3vh7_B 12 EWEREIENYTKLIYKILEESQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 347899999999999988765
No 14
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1}
Probab=30.02 E-value=57 Score=18.71 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 027686 93 QDQHMIEILTYEITDLLRGSE 113 (220)
Q Consensus 93 ~eE~~IE~lT~eIT~lF~~c~ 113 (220)
+=+++|..+|..|..++.+++
T Consensus 10 qw~kei~n~t~~Iy~lle~sq 30 (32)
T 3vgx_D 10 EWDREINNYTSLIHSLIEESQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 347899999999999988765
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.83 E-value=1.3e+02 Score=24.64 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=50.3
Q ss_pred CchhHhhHHHhhh------------------hcCCCCch-----hhHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCcchH
Q 027686 72 PPAWVDDAEEIAN------------------LSSFGDGK-----QDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDS 128 (220)
Q Consensus 72 pP~Wvd~~eei~~------------------~p~F~D~~-----~eE~~IE~lT~eIT~lF~~c~~~I~~i~~~~~~~e~ 128 (220)
||.|-..-+||.| +--|-..| +.|.+|+.+...+..+-.++.++-..+.....+-+
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~- 80 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE- 80 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5666666666666 44454433 46777778877777777777665554433111100
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 027686 129 NLRKNVQHSLATDLQNHSMDLRKNHSTYLKHLQQQKE 165 (220)
Q Consensus 129 ~i~kNvq~sLA~~LQ~LS~~FRk~Q~~YLk~Lk~~~~ 165 (220)
-..+=..+..+.||.--..+|..-..+-++|+.-+.
T Consensus 81 -~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 81 -HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111223555666666677777777777666554
No 16
>2x7r_B Transmembrane protein GP41; envelope glycoprotein, membrane anchored fusion protein, viral protein; 2.00A {Human immunodeficiency virus type 1LW12}
Probab=27.20 E-value=66 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 027686 94 DQHMIEILTYEITDLLRGSEK 114 (220)
Q Consensus 94 eE~~IE~lT~eIT~lF~~c~~ 114 (220)
=|++|...|..|+.++..++.
T Consensus 11 WekeI~nyt~~Iy~LLe~sq~ 31 (63)
T 2x7r_B 11 WDREINNYTSLIHSLIEESQN 31 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHh
Confidence 368999999999999988765
No 17
>3vie_B Sifuvirtide; 6-helix bundle, membrane fusion inhibition, HIV, viral prote antiviral protein complex; 1.80A {Human immunodeficiency virus 1}
Probab=22.66 E-value=1.1e+02 Score=18.22 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 027686 94 DQHMIEILTYEITDLLRGSEK 114 (220)
Q Consensus 94 eE~~IE~lT~eIT~lF~~c~~ 114 (220)
=+++|..+|.-|..++.+++.
T Consensus 6 Wekei~n~t~~Iy~lle~sq~ 26 (37)
T 3vie_B 6 WEREIENYTRQIYRILEESQE 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999887765
No 18
>3o3y_A Chimeric alpha+alpha/beta peptide based on the CH sequence of GP41; HIV fusion inhibitor, HIV GP41, mixed alpha-residue / beta-R backbone; HET: XPC B3E XCP; 1.35A {Synthetic} PDB: 3f4y_D 3g7a_B* 4dzu_B 4dzv_B* 3o42_B* 3o3z_B* 3f4z_A* 3f50_B* 3o43_B* 3o40_B*
Probab=20.75 E-value=1.2e+02 Score=18.35 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 027686 94 DQHMIEILTYEITDLLRGSEK 114 (220)
Q Consensus 94 eE~~IE~lT~eIT~lF~~c~~ 114 (220)
=+++|..+|..|..++.+++.
T Consensus 7 WekeI~n~t~~Iy~lle~sq~ 27 (40)
T 3o3y_A 7 WDXAIAXYAXRIEXLIXAAQX 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 368999999999999887765
Done!