BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027687
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99LQ1|MBIP1_MOUSE MAP3K12-binding inhibitory protein 1 OS=Mus musculus GN=Mbip PE=2
SV=1
Length = 341
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 105 VGWKRTKEISLEKPIGFV---------IMDFLEKLQGLMERDYGSTALLAKVGELVAE-R 154
+ W R + +S +P + + FL KLQ LM+ + +T + E +E R
Sbjct: 55 IDWNRLQSLSASQPALLLTALEQHVLYLQPFLAKLQSLMKENSTATEIRQTEAETKSELR 114
Query: 155 AREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAVKE 196
A E L+DEGK ++ V ++ + L + ++ +KA E
Sbjct: 115 AIHPTEDLQDEGKPKDCDVGDVKKTQNLFDPEVVQIKAGKAE 156
>sp|Q4K843|SYA_PSEF5 Alanine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=alaS PE=3 SV=1
Length = 874
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++GE E ++A + R EE+ L + L+++E D+A +K +V
Sbjct: 335 ALVAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLKILEQDLAELKGSV 387
>sp|B1JCG9|SYA_PSEPW Alanine--tRNA ligase OS=Pseudomonas putida (strain W619) GN=alaS
PE=3 SV=2
Length = 874
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL A++GE E ++A + R EE+ L + LR++E D+A +K V
Sbjct: 335 ALAAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLRILEQDLAQLKGDV 387
>sp|Q88EI8|SYA_PSEPK Alanine--tRNA ligase OS=Pseudomonas putida (strain KT2440) GN=alaS
PE=3 SV=1
Length = 874
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL A++GE E ++A + R EE+ L + LR++E D+A +K V
Sbjct: 335 ALAAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLRILEQDLAQLKGDV 387
>sp|B0KR43|SYA_PSEPG Alanine--tRNA ligase OS=Pseudomonas putida (strain GB-1) GN=alaS
PE=3 SV=2
Length = 874
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL A++GE E ++A + R EE+ L + LR++E D+A +K V
Sbjct: 335 ALAAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLRILEQDLAQLKGDV 387
>sp|A5W0D9|SYA_PSEP1 Alanine--tRNA ligase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=alaS PE=3 SV=2
Length = 874
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL A++GE E ++A + R EE+ L + LR++E D+A +K V
Sbjct: 335 ALAAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLRILEQDLAQLKGDV 387
>sp|Q9M354|AGD6_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD6
OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1
Length = 459
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 21 TSKNQTSRNPSQRSYNSIKCSNTSNNSTPVPAQPEDESFPSPYPNSIATESSDTFPIEKR 80
TS NQ S N Y + N + NS+ +P+ S Y NS + S D++ +
Sbjct: 338 TSWNQQSENEGNGYYQNFGNGNKAANSSVGGGRPQSSSTSGHYNNSQNSNSWDSWGENEN 397
Query: 81 RKSEIL 86
+K+E +
Sbjct: 398 KKTEAV 403
>sp|Q5ALX5|SSN2_CANAL Mediator of RNA polymerase II transcription subunit 13 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SSN2 PE=3
SV=1
Length = 1665
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 30 PSQRSYNSIKC----SNTSNNSTPVPAQPEDESFPSPYPNSIATES 71
P Q +YN + SNT+NN T E F +P+PN I+ S
Sbjct: 739 PQQSNYNPVNITDSGSNTTNNITDKQGYENTEGFGTPFPNQISKYS 784
>sp|Q3K892|SYA_PSEPF Alanine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=alaS PE=3 SV=1
Length = 874
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++GE E ++A + R EE+ L + L+++E D+A +K V
Sbjct: 335 ALVAEMGEAFPELKSQQAHIERVLKAEEEQFAKTLEQGLKILEQDLAELKGDV 387
>sp|A4XWE2|SYA_PSEMY Alanine--tRNA ligase OS=Pseudomonas mendocina (strain ymp) GN=alaS
PE=3 SV=2
Length = 874
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++GE E +++A + R EE+ L + L+++E D+A ++ +V
Sbjct: 335 ALVAEMGEAFPELKQQQAHIERVLKTEEEQFAKTLEQGLKILEQDLAGLQGSV 387
>sp|Q174I2|PRIC1_AEDAE Protein prickle OS=Aedes aegypti GN=pk PE=3 SV=1
Length = 916
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 2 AATFFPFLSQPNSPLFNHFTSKNQTSRNPSQRSYNSIKCSNTSNNSTPVPAQPEDESFPS 61
+A + P L + PL + + ++ +P++ S+ + ++N S+PVP + D+++
Sbjct: 491 SAEYVPNLPKSPEPLQSPISERSTPHSSPAKHSHTEM----STNISSPVPTEFNDQTYSV 546
Query: 62 PYPNSIATE--SSDTFPIEKR 80
N + T S T PI R
Sbjct: 547 SADNDVQTYTGSGATSPISSR 567
>sp|A5EW88|SYA_DICNV Alanine--tRNA ligase OS=Dichelobacter nodosus (strain VCS1703A)
GN=alaS PE=3 SV=1
Length = 873
Score = 31.2 bits (69), Expect = 5.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++GE E E+A + K E R L+ ++++E D+A +K +
Sbjct: 337 ALVAEMGEAYPEIIAEQARITETIRKEELRFAQTLTAGMQILEQDLATLKGTI 389
>sp|A6VA71|SYA_PSEA7 Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=alaS
PE=3 SV=1
Length = 874
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++G+ E +++A + R EE+ L + L+++E D+A ++ +V
Sbjct: 335 ALVAEMGDAFPELKQQQAHIERVLKTEEEQFAKTLEQGLKILEQDLAELQGSV 387
>sp|Q9I553|SYA_PSEAE Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=alaS PE=3 SV=1
Length = 874
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++G+ E +++A + R EE+ L + L+++E D+A ++ +V
Sbjct: 335 ALVAEMGDAFPELKQQQAHIERVLKTEEEQFAKTLEQGLKILEQDLAELQGSV 387
>sp|Q02I63|SYA_PSEAB Alanine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=alaS PE=3 SV=1
Length = 874
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+A++G+ E +++A + R EE+ L + L+++E D+A ++ +V
Sbjct: 335 ALVAEMGDAFPELKQQQAHIERVLKTEEEQFAKTLEQGLKILEQDLAELQGSV 387
>sp|Q1I6Z8|SYA_PSEE4 Alanine--tRNA ligase OS=Pseudomonas entomophila (strain L48)
GN=alaS PE=3 SV=1
Length = 874
Score = 30.8 bits (68), Expect = 8.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 142 ALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAAV 194
AL+ ++GE E ++A + R EE+ L + LR++E D+A ++ V
Sbjct: 335 ALVTEMGEAFPELKGQQAHIERVLKTEEEQFAKTLEQGLRILEQDLAQLQGKV 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,645,224
Number of Sequences: 539616
Number of extensions: 3071325
Number of successful extensions: 12667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 12482
Number of HSP's gapped (non-prelim): 295
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)