Query 027687
Match_columns 220
No_of_seqs 12 out of 14
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 23:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zt2_B DNA primase large subun 58.1 22 0.00075 29.0 6.0 74 126-208 10-91 (212)
2 3k53_A Ferrous iron transport 52.4 36 0.0012 26.4 6.3 99 112-212 142-242 (271)
3 3h9p_A Putative triphosphoribo 32.3 70 0.0024 26.9 5.3 52 126-192 174-225 (249)
4 3gyx_A Adenylylsulfate reducta 30.9 1.3E+02 0.0046 27.6 7.3 58 118-182 530-595 (662)
5 2dpo_A L-gulonate 3-dehydrogen 28.2 65 0.0022 26.9 4.4 17 120-136 245-261 (319)
6 1m1j_C Fibrinogen gamma chain; 27.1 2.4E+02 0.0081 25.4 8.1 24 117-140 19-42 (409)
7 2rae_A Transcriptional regulat 24.1 1.8E+02 0.0062 20.0 6.0 42 132-173 52-94 (207)
8 3mzy_A RNA polymerase sigma-H 21.4 1.1E+02 0.0037 20.7 3.8 39 176-215 117-157 (164)
9 2qyw_A Vesicle transport throu 20.1 1.6E+02 0.0056 21.2 4.7 42 170-212 55-96 (102)
10 2qwt_A Transcriptional regulat 20.0 2.3E+02 0.008 19.8 8.1 63 131-193 46-109 (196)
No 1
>1zt2_B DNA primase large subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: a.262.1.1
Probab=58.08 E-value=22 Score=28.97 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcccch----hhHHHhhhhHHHHHHHHHHHHHhhcchhhHHHH---HH-HHHHHHHHHHhHHHHHHHhhhh
Q 027687 126 FLEKLQGLMERDYGS----TALLAKVGELVAERAREEAEVLRDEGKVEERMV---TE-LSRVLRLMEMDMAMVKAAVKEE 197 (220)
Q Consensus 126 flekle~Lm~r~fGS----~~Llak~geiVaERAreEaEvLrdegkVeermv---tE-lfRVLrLmeMDlamVkAavKEe 197 (220)
|+.....++.+ ||. ..+|+. .+.+.+||.|=.+.....+.++.... .| +|=+.++ +-+++++.
T Consensus 10 Fl~~a~~~v~~-~g~g~~L~~ll~~-~~~~ve~a~eRV~~ai~~~~~~~~~~~~~~el~~y~all-------ivs~~~d~ 80 (212)
T 1zt2_B 10 FIKSLDDELKK-YGGGITLTDLLLN-STTLIDQAKDRIQKTKSGDELPHYVSYNEPVLVFYTTLL-------SLAILNDV 80 (212)
T ss_dssp GGSCHHHHHHT-TCSSCCHHHHHHH-CSHHHHHHHHHHHHHHHTCCCCCGGGSSSHHHHHHHHHH-------HHHHHTCH
T ss_pred CchHHHHHHHh-ccCCCcHHHHHhC-cHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH-------HHHHcCCh
Confidence 67777777766 898 455555 67778999988877664444421100 11 2211122 33446677
Q ss_pred HHHHHHHHHHH
Q 027687 198 TLSERLEQAKA 208 (220)
Q Consensus 198 Tl~ERle~Ara 208 (220)
.+.+|.-.|.|
T Consensus 81 ~l~~r~a~~EA 91 (212)
T 1zt2_B 81 KLIRRYAYAEA 91 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766665
No 2
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=52.42 E-value=36 Score=26.39 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=54.6
Q ss_pred cccccCCcchhHHHHHHHHHHhhhcccchhhHHHhhhhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhHHHHH
Q 027687 112 EISLEKPIGFVIMDFLEKLQGLMERDYGSTALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVK 191 (220)
Q Consensus 112 ei~Lekp~G~vI~dflekle~Lm~r~fGS~~Llak~geiVaERAreEaEvLrdegkVeermvtElfRVLrLmeMDlamVk 191 (220)
-++..-..|.=|-++++.+..+......+..+-...++ -+|++.+++..+.++...-++.-.. +-.++|+|-|-...+
T Consensus 142 ~~~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l~~~~~~~~~~~~~~~~-~~a~~~le~d~~~~~ 219 (271)
T 3k53_A 142 VIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHISELLRGTPLAEKYPIR-WLALKLLQRDEEVIK 219 (271)
T ss_dssp EEECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHHHHHHHSSSSTTTSCHH-HHHHHHHTTCHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHHHHHHhhcccccccChh-HHHHHHHCCCHHHHH
Confidence 34566667777888888888877654433222222222 2455555555555443222222222 345789999977655
Q ss_pred HHhhhh--HHHHHHHHHHHHHHH
Q 027687 192 AAVKEE--TLSERLEQAKARCRQ 212 (220)
Q Consensus 192 AavKEe--Tl~ERle~ArarCrq 212 (220)
..-... ...+.++++++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~ 242 (271)
T 3k53_A 220 LVLKYLGQEKMDEILKHISELEE 242 (271)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHhhccchhhHHHHHHHHHHHHH
Confidence 432221 246677777777754
No 3
>3h9p_A Putative triphosphoribosyl-dephospho-COA synthase; putative triphosphoribosyl-dephospho synthase, structural genomics, PSI-2; HET: PG4; 2.30A {Archaeoglobus fulgidus dsm 4304}
Probab=32.31 E-value=70 Score=26.86 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=42.0
Q ss_pred HHHHHHHhhhcccchhhHHHhhhhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhHHHHHH
Q 027687 126 FLEKLQGLMERDYGSTALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKA 192 (220)
Q Consensus 126 flekle~Lm~r~fGS~~Llak~geiVaERAreEaEvLrdegkVeermvtElfRVLrLmeMDlamVkA 192 (220)
.+.-|-.||.. +..|-++.+.|.-+++.++++|..+.+.| .|.++|-.+++.
T Consensus 174 ~l~alL~lma~-~~DT~I~~R~G~~~l~~vq~~A~~~l~~g--------------~l~~lD~~l~~r 225 (249)
T 3h9p_A 174 VVELYYHLLSK-FPDPLVIAKMGREYAEKITEWAEKARTEE--------------ERKELDEKLLKD 225 (249)
T ss_dssp HHHHHHHHHTT-SCCHHHHHHHCHHHHHHHHHHHHHCCSHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCcccccCCHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHC
Confidence 45667778876 88999999999999999999999887765 577777777654
No 4
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=30.88 E-value=1.3e+02 Score=27.56 Aligned_cols=58 Identities=22% Similarity=0.156 Sum_probs=37.6
Q ss_pred CcchhHHHHHHHHHHhhhcccc-------hhh-HHHhhhhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 027687 118 PIGFVIMDFLEKLQGLMERDYG-------STA-LLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRL 182 (220)
Q Consensus 118 p~G~vI~dflekle~Lm~r~fG-------S~~-Llak~geiVaERAreEaEvLrdegkVeermvtElfRVLrL 182 (220)
|.+..+.++...|+.+|.+-.| +.+ .|..+-+.+ +..+++.+.+...+. +||.+.+.|
T Consensus 530 ~~~~~~~~~~~~lq~~M~~~~g~~~~v~R~~~~~L~~al~~l-~~l~~~~~~~~~~~~------~~l~~~~E~ 595 (662)
T 3gyx_A 530 PEYISPKNFMMRLIKCTDEYGGGVGTYYNTSKALLDTGFWLM-EMLEEDSLKLAARDL------HELLRCWEN 595 (662)
T ss_dssp SSSBCHHHHHHHHHHHHHHHTTCTTTTTEECHHHHHHHHHHH-HHHHHHGGGBCCSSH------HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHhcCCCccEEEcCHHHHHHHHHHH-HHHHHHHhcCcCCCh------HHHHHHHHH
Confidence 4467888999999999999888 454 665554444 335565555554443 566555544
No 5
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=28.20 E-value=65 Score=26.85 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHhhhc
Q 027687 120 GFVIMDFLEKLQGLMER 136 (220)
Q Consensus 120 G~vI~dflekle~Lm~r 136 (220)
|-.+.+|++.|..-|.+
T Consensus 245 g~g~~~~~~~~~~~~~~ 261 (319)
T 2dpo_A 245 AEGMLSYSDRYSEGMKR 261 (319)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhHHHHH
Confidence 33566777776654443
No 6
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.08 E-value=2.4e+02 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.4
Q ss_pred CCcchhHHHHHHHHHHhhhcccch
Q 027687 117 KPIGFVIMDFLEKLQGLMERDYGS 140 (220)
Q Consensus 117 kp~G~vI~dflekle~Lm~r~fGS 140 (220)
=|.|--|+|||-|.+.=+++.+..
T Consensus 19 CPT~C~i~d~L~k~e~~V~~~l~~ 42 (409)
T 1m1j_C 19 CPTTCGIADFFNKYRLTTDGELLE 42 (409)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHhcchhHHHH
Confidence 489999999999999988876654
No 7
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=24.08 E-value=1.8e+02 Score=20.04 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=24.1
Q ss_pred Hhhhcccchhh-HHHhhhhHHHHHHHHHHHHHhhcchhhHHHH
Q 027687 132 GLMERDYGSTA-LLAKVGELVAERAREEAEVLRDEGKVEERMV 173 (220)
Q Consensus 132 ~Lm~r~fGS~~-Llak~geiVaERAreEaEvLrdegkVeermv 173 (220)
+.+-+.|||.+ |+..+-+-+.++..+..+.+.+.+...+++.
T Consensus 52 ~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (207)
T 2rae_A 52 RTLFRYFPSKNAIPWGDFDAHLAEMRAQLAAQPDDIPIVDGLT 94 (207)
T ss_dssp HHHHHHCSSTTTGGGCSHHHHHHHHHHHHHHSCTTSCHHHHHH
T ss_pred chHhhhCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 45566777764 5555555566666665555544445555543
No 8
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.36 E-value=1.1e+02 Score=20.69 Aligned_cols=39 Identities=3% Similarity=0.115 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHHHH--HhhhhHHHHHHHHHHHHHHHHhH
Q 027687 176 LSRVLRLMEMDMAMVKA--AVKEETLSERLEQAKARCRQAIL 215 (220)
Q Consensus 176 lfRVLrLmeMDlamVkA--avKEeTl~ERle~ArarCrqAIl 215 (220)
+|. +.+-+|..+-|-. -+.+.|++.++..|+++.|+.+.
T Consensus 117 v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 117 VLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344 4555666665544 36789999999999999998764
No 9
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.14 E-value=1.6e+02 Score=21.20 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 027687 170 ERMVTELSRVLRLMEMDMAMVKAAVKEETLSERLEQAKARCRQ 212 (220)
Q Consensus 170 ermvtElfRVLrLmeMDlamVkAavKEeTl~ERle~ArarCrq 212 (220)
|+-+.|.-.+|+-||+-+.-+-.+++- .++.||...|..+..
T Consensus 55 e~~ldEA~eLl~qMelE~r~~p~s~R~-~~~~klr~Yk~dL~~ 96 (102)
T 2qyw_A 55 DEKQQEANETLAEMEEELRYAPLTFRN-PMMSKLRNYRKDLAK 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHH
Confidence 455667778888888888777766664 788999998888743
No 10
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=19.95 E-value=2.3e+02 Score=19.77 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHhhhcccchhh-HHHhhhhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 027687 131 QGLMERDYGSTA-LLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAMVKAA 193 (220)
Q Consensus 131 e~Lm~r~fGS~~-Llak~geiVaERAreEaEvLrdegkVeermvtElfRVLrLmeMDlamVkAa 193 (220)
.+.+-+.|||.+ |+..+-.-+.++..+.++...+.+...+++..=+...+..+.-+-.++...
T Consensus 46 ~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (196)
T 2qwt_A 46 AGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLAAEGPGEALFVFMRDMVRSAAADYGLVDAL 109 (196)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 466677888875 555555555566555555444455566665544444555555554444443
Done!