Query 027687
Match_columns 220
No_of_seqs 12 out of 14
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 23:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027687.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027687hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rp3a2 a.4.13.2 (A:164-234) S 30.8 27 0.002 20.7 3.7 41 174-214 27-69 (71)
2 d1ziva1 d.3.1.3 (A:28-337) Cal 30.0 8.3 0.0006 29.9 1.3 33 55-88 17-49 (310)
3 d1fgja_ a.138.1.3 (A:) Hydroxy 27.2 19 0.0014 29.3 3.0 30 138-172 469-498 (499)
4 d1nvpb_ a.32.1.1 (B:) Large ch 25.9 46 0.0034 20.6 4.1 34 147-180 5-38 (43)
5 d1or7a1 a.4.13.2 (A:120-187) S 24.6 44 0.0032 20.0 3.8 40 175-214 25-66 (68)
6 d1x38a1 c.1.8.7 (A:1-388) Beta 22.2 36 0.0026 26.7 3.8 31 154-184 323-354 (388)
7 d1w7ba_ a.65.1.1 (A:) Annexin 20.7 1.7E+02 0.012 22.5 7.6 53 150-205 242-301 (319)
8 d2gm6a1 b.82.1.19 (A:11-202) C 19.7 57 0.0042 23.8 4.3 34 122-155 4-37 (192)
9 d1okkd1 a.24.13.1 (D:21-78) Si 18.8 99 0.0072 19.4 4.8 23 118-140 3-26 (58)
10 d1chua1 a.7.3.1 (A:423-533) L- 18.2 1.3E+02 0.0094 19.9 8.1 76 114-194 4-83 (111)
No 1
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=30.83 E-value=27 Score=20.71 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHH--hhhhHHHHHHHHHHHHHHHHh
Q 027687 174 TELSRVLRLMEMDMAMVKAA--VKEETLSERLEQAKARCRQAI 214 (220)
Q Consensus 174 tElfRVLrLmeMDlamVkAa--vKEeTl~ERle~ArarCrqAI 214 (220)
.++|.....-+|+.+-|-.. +.+.|++.|+..|++++|+.+
T Consensus 27 r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~L 69 (71)
T d1rp3a2 27 KLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREML 69 (71)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc
Confidence 34455555667777777664 579999999999999999865
No 2
>d1ziva1 d.3.1.3 (A:28-337) Calpain large subunit, catalytic domain (domain II) {Human (Homo sapiens), calpain 9 [TaxId: 9606]}
Probab=30.04 E-value=8.3 Score=29.94 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCcccCCCCcccchhhchhhhhhh
Q 027687 55 EDESFPSPYPNSIATESSDTFPIEKRRKSEILRE 88 (220)
Q Consensus 55 ~~~~f~~P~P~s~t~n~~~~f~iekrr~s~i~r~ 88 (220)
+|++|| |...|...+.....+++-+|+++|..+
T Consensus 17 ~D~~Fp-p~~~sl~~~~~~~~~~~W~Rp~~~~~~ 49 (310)
T d1ziva1 17 EDADFP-ASNSSLFYSERPQIPFVWKRPGEIVKN 49 (310)
T ss_dssp CCSSSC-SSGGGTCCC--CCCSCEEECGGGTSSS
T ss_pred ECcCcC-CCccccccCCCCCCCceEeChHHhcCC
Confidence 467775 444454455556677777888877654
No 3
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {Nitrosomonas europaea [TaxId: 915]}
Probab=27.23 E-value=19 Score=29.31 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=23.7
Q ss_pred cchhhHHHhhhhHHHHHHHHHHHHHhhcchhhHHH
Q 027687 138 YGSTALLAKVGELVAERAREEAEVLRDEGKVEERM 172 (220)
Q Consensus 138 fGS~~Llak~geiVaERAreEaEvLrdegkVeerm 172 (220)
||..+|.--+.+| ++||+.||.++++|.+|
T Consensus 469 ~g~~~~~~~~~~i-----~~~a~~~~~~~~~~~~~ 498 (499)
T d1fgja_ 469 EGWGPMNRAYVEI-----QDEYTKMQELSALQARV 498 (499)
T ss_dssp STHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH-----HHHHHHHHHHHHHHhhc
Confidence 6777777666555 78899999999988876
No 4
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.88 E-value=46 Score=20.55 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 027687 147 VGELVAERAREEAEVLRDEGKVEERMVTELSRVL 180 (220)
Q Consensus 147 ~geiVaERAreEaEvLrdegkVeermvtElfRVL 180 (220)
+=.-|+|-.-+.....-.+.+|+|+.+.||-++-
T Consensus 5 vY~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~W 38 (43)
T d1nvpb_ 5 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLW 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3333444433333334445679999999998764
No 5
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=24.56 E-value=44 Score=20.02 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHHHHHHH--hhhhHHHHHHHHHHHHHHHHh
Q 027687 175 ELSRVLRLMEMDMAMVKAA--VKEETLSERLEQAKARCRQAI 214 (220)
Q Consensus 175 ElfRVLrLmeMDlamVkAa--vKEeTl~ERle~ArarCrqAI 214 (220)
|+|+.-.+-+|..+-|... +.+.|++-|+-.|+.+.|..+
T Consensus 25 ~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 25 MAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 66 (68)
T ss_dssp HHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 3444444556777776654 689999999999999998765
No 6
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=22.24 E-value=36 Score=26.69 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcchhhH-HHHHHHHHHHHHHH
Q 027687 154 RAREEAEVLRDEGKVEE-RMVTELSRVLRLME 184 (220)
Q Consensus 154 RAreEaEvLrdegkVee-rmvtElfRVLrLme 184 (220)
..-+.++..+++|.|.+ |+=.=+.|||+++.
T Consensus 323 ~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~ 354 (388)
T d1x38a1 323 QFISILTGHVNGGVIPMSRIDDAVTRILRVKF 354 (388)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34455666788999854 44455788888764
No 7
>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.68 E-value=1.7e+02 Score=22.55 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhh---cchhhHHHHHHHHHHHH-HHHHhHHHHHHHhhh---hHHHHHHHH
Q 027687 150 LVAERAREEAEVLRD---EGKVEERMVTELSRVLR-LMEMDMAMVKAAVKE---ETLSERLEQ 205 (220)
Q Consensus 150 iVaERAreEaEvLrd---egkVeermvtElfRVLr-LmeMDlamVkAavKE---eTl~ERle~ 205 (220)
.+..+++--|+.|.. .-+.+|..++ |++- --|.||.-||++.++ .||.++++.
T Consensus 242 ~~~~~~~~~A~~L~~Am~G~gtdd~~Li---riiv~R~e~dl~~Ik~~y~~~yg~~L~~~I~~ 301 (319)
T d1w7ba_ 242 CIQNKPLYFADRLYDSMKGKGTRDKVLI---RIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQ 301 (319)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCCHHHHH---HHHHHHTTTTHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhcchHHHHHHHHHHhcCCCCChhhhe---eeeeecCHHHHHHHHHHHHHHhCCcHHHHHHh
Confidence 345677777888764 2344666554 4443 468899999999987 578887754
No 8
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}
Probab=19.74 E-value=57 Score=23.77 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhhhcccchhhHHHhhhhHHHHHH
Q 027687 122 VIMDFLEKLQGLMERDYGSTALLAKVGELVAERA 155 (220)
Q Consensus 122 vI~dflekle~Lm~r~fGS~~Llak~geiVaERA 155 (220)
.+.+|++.+..++++.=+..+.|+.++..+.+-+
T Consensus 4 ~L~~fi~~i~~ll~~~~~~~~~l~~v~~ll~~l~ 37 (192)
T d2gm6a1 4 PLREFITGLSALLDEQPGEARILREGGALLARLV 37 (192)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 4779999999999987777888777776665544
No 9
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}
Probab=18.77 E-value=99 Score=19.41 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=16.6
Q ss_pred CcchhHHHHHHHHHHhhhc-ccch
Q 027687 118 PIGFVIMDFLEKLQGLMER-DYGS 140 (220)
Q Consensus 118 p~G~vI~dflekle~Lm~r-~fGS 140 (220)
|-|-..=||+|.||++|=- .+|-
T Consensus 3 ~~g~~~d~~leeLEe~Li~ADvGv 26 (58)
T d1okkd1 3 PWGGNLEEVLEELEMALLAADVGL 26 (58)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCH
T ss_pred CCCCCcHHHHHHHHHHHHHcccCH
Confidence 4567788999999987733 5553
No 10
>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=18.21 E-value=1.3e+02 Score=19.90 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=44.4
Q ss_pred cccCCcchhHHH-HHHHHHHhhhcccc---hhhHHHhhhhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhHHH
Q 027687 114 SLEKPIGFVIMD-FLEKLQGLMERDYG---STALLAKVGELVAERAREEAEVLRDEGKVEERMVTELSRVLRLMEMDMAM 189 (220)
Q Consensus 114 ~Lekp~G~vI~d-flekle~Lm~r~fG---S~~Llak~geiVaERAreEaEvLrdegkVeermvtElfRVLrLmeMDlam 189 (220)
.+..|.+.+... ..+.|..+|.+-.| +.+.|..+-+. .+..++++..+...+++. .+++.+-.++..=..|
T Consensus 4 ~~~~~~e~~~~~~~~~~L~~~M~~~~GivR~~~~L~~al~~-l~~l~~~~~~~~~~~~~~----~~~~el~nml~~A~~i 78 (111)
T d1chua1 4 RVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRR-ITMLQQEIDEYYAHFRVS----NNLLELRNLVQVAELI 78 (111)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHSSSSBCHHHHHHHHHH-HHHHHHHHHHHHTTBCCC----HHHHHHHHHHHHHHHH
T ss_pred cccCCCCceehHHHHHHHHHHHHHhCCeeecCHHHHHHHHH-HHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHH
Confidence 456677776555 57899999999655 55556544333 244455554444444432 3455555555555566
Q ss_pred HHHHh
Q 027687 190 VKAAV 194 (220)
Q Consensus 190 VkAav 194 (220)
++||.
T Consensus 79 ~~aAl 83 (111)
T d1chua1 79 VRCAM 83 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
Done!