BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027688
MAVSSSSLSVLSPNSVPRISPKQSEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAG
GKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAV
ECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEI
YNMERGARDKLINDYNTMSIWEFNEKYGHLWDFTVQRDMN

High Scoring Gene Products

Symbol, full name Information P value
PnsB5
AT5G43750 		protein from Arabidopsis thaliana 6.2e-62

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027688
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2170827 - symbol:PnsB5 "AT5G43750" species:370...   633  6.2e-62   1


>TAIR|locus:2170827 [details] [associations]
            symbol:PnsB5 "AT5G43750" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0006979 "response to oxidative stress"
            evidence=IMP] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0030003
            "cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
            metal ion transport" evidence=RCA] EMBL:CP002688 GO:GO:0006979
            EMBL:AB026651 GO:GO:0009535 EMBL:BT004156 EMBL:BT005490
            IPI:IPI00533642 RefSeq:NP_568629.1 UniGene:At.30103 IntAct:Q9FG89
            STRING:Q9FG89 PRIDE:Q9FG89 EnsemblPlants:AT5G43750.1 GeneID:834396
            KEGG:ath:AT5G43750 TAIR:At5g43750 InParanoid:Q9FG89 OMA:IEMDKPD
            PhylomeDB:Q9FG89 ProtClustDB:CLSN2689925 ArrayExpress:Q9FG89
            Genevestigator:Q9FG89 Uniprot:Q9FG89
        Length = 212

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 117/202 (57%), Positives = 148/202 (73%)

Query:    19 ISPKQ--SEINAKLSNTQDSASVHVKLFGKSSSRSGSVTKLNAGGKLALIEPDLNEDPKD 76
             +SPK      ++K         V+V   GKS  R   + KL +   L+ IEPD+NEDP  
Sbjct:     7 LSPKSIPKVTDSKFGARVSDQIVNVVKCGKSGRRL-KLAKLVSAAGLSQIEPDINEDPIG 65

Query:    77 RWATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLP 136
             ++ TN ++ EDF YG YDGAHTY+EG V  G+FWGAIADDI AV+   GFQG I  +FLP
Sbjct:    66 QFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNGFQGLISCMFLP 125

Query:   137 AVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYN 196
             A+A  MYF+ PGEYLFIGAA+F  +F +IE+DKPD+PHNFEP+IY +ERGARDKLINDYN
Sbjct:   126 AIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLERGARDKLINDYN 185

Query:   197 TMSIWEFNEKYGHLWDFTVQRD 218
             TMSIW+FN+KYG +WDFT+++D
Sbjct:   186 TMSIWDFNDKYGDVWDFTIEKD 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       205   0.00096  111 3  11 22  0.38    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  189 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.14u 0.07s 17.21t   Elapsed:  00:00:01
  Total cpu time:  17.14u 0.07s 17.21t   Elapsed:  00:00:01
  Start:  Sat May 11 04:53:31 2013   End:  Sat May 11 04:53:32 2013

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