BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027688
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8JZR6|S4A8_MOUSE Electroneutral sodium bicarbonate exchanger 1 OS=Mus musculus
GN=Slc4a8 PE=2 SV=1
Length = 1089
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 78 WATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPA 137
WA V ++GE+ G+ H G D+ C F FI L
Sbjct: 662 WANLTVSECQEMHGEFMGSACGHHG---------PYTPDVLFWSCILFFATFIVSSTLKT 712
Query: 138 VATAMYFNVPGEYLFIGAAVFVTIFTVIELD--------KPDKPHNFEP 178
T+ YF + AVF+TIFT++ LD K P+ F+P
Sbjct: 713 FKTSRYFPTRVRSMVSDFAVFLTIFTMVVLDFLIGVPSPKLQVPNVFKP 761
>sp|Q98LX5|GLMS_RHILO Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Rhizobium loti (strain MAFF303099) GN=glmS PE=3 SV=3
Length = 607
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 45 GKSSSRSGSVTKLNAGGKLALIEPDLNEDPKD--------RWATNGVDPEDFLYGEY-DG 95
G ++ G + + A GKL +E L E+P D RWAT+GV E + + DG
Sbjct: 33 GVATIEHGELARRRAEGKLINLERRLKEEPLDGTIGIGHTRWATHGVPNETNAHPHFSDG 92
Query: 96 AHTYHEG 102
H G
Sbjct: 93 VAIVHNG 99
>sp|Q817E2|Y4613_BACCR UPF0173 metal-dependent hydrolase BC_4613 OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=BC_4613 PE=3 SV=1
Length = 227
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 46 KSSSRSGSVTKLNAGGKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAH 97
K S SV K+ A GK+ LI+P L +PK T V + L G H
Sbjct: 2 KVSYHGHSVVKIEANGKVILIDPFLTGNPKTDLKTEDVKVDAILLSHGHGDH 53
>sp|Q2Y0W8|S4A8_HUMAN Electroneutral sodium bicarbonate exchanger 1 OS=Homo sapiens
GN=SLC4A8 PE=1 SV=1
Length = 1093
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 78 WATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPA 137
WA V ++GE+ G+ H G D+ C F FI L
Sbjct: 664 WANLTVSECQEMHGEFMGSACGHHG---------PYTPDVLFWSCILFFTTFILSSTLKT 714
Query: 138 VATAMYFNVPGEYLFIGAAVFVTIFTVIELD---KPDKPHNFEPEIYNMERGARDKLIN 193
T+ YF + AVF+TIFT++ +D P P ++ R R +IN
Sbjct: 715 FKTSRYFPTRVRSMVSDFAVFLTIFTMVIIDFLIGVPSPKLQVPSVFKPTRDDRGWIIN 773
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 4 SSSSLSVLSPNSVPRISPKQSEINAKL--SNTQDSASVHVKLFGKSSSRSGSVTKLNAGG 61
SS + +L+ + + K +++K SNT+D K+FGK+ R S+ L+
Sbjct: 425 SSEKIDLLASDPHEALICKSERVHSKSVESNTED------KIFGKTYRRKASLPNLSHVT 478
Query: 62 KLALI-----EPDL-------NEDPKDRWATNGVDPEDFL 89
+ +I EP + N+ + R AT+G+ PEDF+
Sbjct: 479 ENLIIGAFVTEPQIIQERPLTNKLKRKRRATSGLHPEDFI 518
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 26/107 (24%)
Query: 9 SVLSPNSVPRISPKQSEINAKLSNTQD-----SASVHVK---------LFGKSSSRSGSV 54
+V PN V S +I+ S+ QD S VH K +FGK+ R S+
Sbjct: 409 AVEVPNEVGEYSGSSEKIDLMASDPQDAFICESERVHTKPVGGNIEDKIFGKTYRRKASL 468
Query: 55 TKLNAGGKLALI------------EPDLNEDPKDRWATNGVDPEDFL 89
K++ ++ I P +N+ R T+ + PEDF+
Sbjct: 469 PKVSHTTEVLTIGACAIEPQTMQTHPFMNKAEHKRRTTSSLHPEDFI 515
>sp|Q6RVG2|S4A8_RAT Electroneutral sodium bicarbonate exchanger 1 OS=Rattus norvegicus
GN=Slc4a8 PE=1 SV=1
Length = 1067
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 78 WATNGVDPEDFLYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWLFLPA 137
WA V ++GE+ G+ H G D+ C F FI L
Sbjct: 639 WANLTVSECQEMHGEFIGSACGHHG---------PYTPDVLFWSCILFFATFIVSSTLKT 689
Query: 138 VATAMYFNVPGEYLFIGAAVFVTIFTVIELD 168
T+ YF AVF+TIFT++ LD
Sbjct: 690 FKTSRYFPTRVRSTVSDFAVFLTIFTMVILD 720
>sp|P05465|DHGA_ACICA Quinoprotein glucose dehydrogenase A OS=Acinetobacter calcoaceticus
GN=gdhA PE=3 SV=1
Length = 801
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 24/176 (13%)
Query: 61 GKLALIEPDLNEDPKDRWATNGVDPEDFLYGEYDGAHTYHEGGVVTGS---FWGAIADDI 117
G+L + D + D V+ ++F+ Y G + G+VTGS G++ D+
Sbjct: 302 GRLVAVNADTGKACTDFGQNGQVNLQEFMPYAYPGGYNPTSPGIVTGSTVVIAGSVTDNY 361
Query: 118 KAVECPTGF-------QGFIGWLF---------LPAVATAMYFNVPGEYLFIGA-AVFVT 160
E P+G G + W+F +P T N P + + A
Sbjct: 362 SNKE-PSGVIRGYDVNTGKLLWVFDTGAADPNAMPGEGTTFVHNSPNAWAPLAYDAKLDI 420
Query: 161 IFTVIELDKPDKPHNFEPEIYNMERGARDKL-INDYNTMSIWEFNEKYGHLWDFTV 215
++ + PD E+ ER A L IN +W F + LWD V
Sbjct: 421 VYVPTGVGTPDIWGGDRTEL--KERYANSMLAINASTGKLVWNFQTTHHDLWDMDV 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,892,615
Number of Sequences: 539616
Number of extensions: 3856666
Number of successful extensions: 9396
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9391
Number of HSP's gapped (non-prelim): 14
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)