Query 027688
Match_columns 220
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 13:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11297 DUF3098: Protein of u 78.8 0.95 2.1E-05 34.1 0.9 35 151-185 11-45 (69)
2 PF11808 DUF3329: Domain of un 74.1 1.6 3.5E-05 32.8 1.0 32 129-160 11-42 (90)
3 PF12650 DUF3784: Domain of un 61.3 3.6 7.8E-05 30.5 0.7 17 183-199 14-30 (97)
4 PF04478 Mid2: Mid2 like cell 51.7 3.6 7.8E-05 35.2 -0.8 26 138-164 50-75 (154)
5 PF10003 DUF2244: Integral mem 48.7 5.7 0.00012 31.8 -0.1 40 121-167 7-46 (140)
6 PRK09917 hypothetical protein; 42.3 18 0.00039 30.0 2.0 26 131-156 15-40 (157)
7 TIGR02230 ATPase_gene1 F0F1-AT 36.7 15 0.00032 29.2 0.6 39 125-163 43-87 (100)
8 PF08122 NDUF_B12: NADH-ubiqui 32.5 13 0.00029 26.5 -0.3 21 151-172 31-51 (57)
9 PRK13899 type IV secretion sys 31.7 18 0.00038 28.1 0.3 21 141-161 18-38 (97)
10 KOG1725 Protein involved in me 31.4 17 0.00037 31.7 0.2 23 142-164 31-53 (186)
11 PF08765 Mor: Mor transcriptio 30.0 8.9 0.00019 29.3 -1.6 28 181-208 55-83 (108)
12 COG2361 Uncharacterized conser 28.8 20 0.00043 29.5 0.1 23 177-199 64-87 (117)
13 COG2738 Predicted Zn-dependent 26.1 39 0.00084 30.7 1.5 53 98-158 100-153 (226)
14 PRK13499 rhamnose-proton sympo 24.4 33 0.00071 32.0 0.8 42 128-169 183-239 (345)
15 PF06692 MNSV_P7B: Melon necro 24.1 29 0.00063 26.0 0.3 33 145-177 8-44 (61)
16 PF10517 DM13: Electron transf 23.8 25 0.00054 26.6 -0.1 18 192-209 85-104 (108)
17 COG1356 tfx Transcriptional re 23.6 13 0.00029 31.6 -1.8 24 179-202 39-62 (143)
18 PF14023 DUF4239: Protein of u 23.2 56 0.0012 26.8 1.8 13 159-171 182-194 (209)
19 KOG4363 Putative growth respon 22.5 54 0.0012 30.5 1.7 36 130-181 125-162 (270)
20 PF06245 DUF1015: Protein of u 21.8 30 0.00065 32.2 -0.0 41 89-133 203-243 (416)
21 KOG0074 GTP-binding ADP-ribosy 21.5 46 0.001 29.4 1.0 39 56-94 24-68 (185)
22 COG5170 CDC55 Serine/threonine 20.1 41 0.00088 32.9 0.5 21 186-206 291-311 (460)
No 1
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=78.75 E-value=0.95 Score=34.09 Aligned_cols=35 Identities=34% Similarity=0.650 Sum_probs=29.2
Q ss_pred hhhhhhhhhheeeeeeeCCCCCCCCCChhhhhhhh
Q 027688 151 LFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMER 185 (220)
Q Consensus 151 Lfiga~lFi~vFciIEMdKPDKPHnFEPeIY~meR 185 (220)
|.||.++=++-|+++=-++-+.|..|+||||.-.|
T Consensus 11 l~iG~~vIilGfilMsg~~s~dp~~fn~~Ifs~~r 45 (69)
T PF11297_consen 11 LAIGIAVIILGFILMSGGGSDDPNVFNPDIFSFRR 45 (69)
T ss_pred HHHHHHHHHHHHHheeCCCCCCccccCccccceee
Confidence 34666777778999999999999999999997654
No 2
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=74.13 E-value=1.6 Score=32.75 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHHHhhcCCCccchhhhhhhhhh
Q 027688 129 FIGWLFLPAVATAMYFNVPGEYLFIGAAVFVT 160 (220)
Q Consensus 129 ~ISWlFlPai~aGm~FnvPgEYLfiga~lFi~ 160 (220)
.+.+++++++++|++||.+..-|+++++++++
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~ 42 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLLYLF 42 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46678899999999999998777777666554
No 3
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=61.34 E-value=3.6 Score=30.52 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.0
Q ss_pred hhhcccccccccCCccc
Q 027688 183 MERGARDKLINDYNTMS 199 (220)
Q Consensus 183 meRgardkli~dyntm~ 199 (220)
.-.+....||+.|||||
T Consensus 14 i~~~k~~~LIaGyntms 30 (97)
T PF12650_consen 14 ILKGKGYFLIAGYNTMS 30 (97)
T ss_pred HHhcCcccchhhcccCC
Confidence 34577789999999997
No 4
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=51.71 E-value=3.6 Score=35.17 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=20.8
Q ss_pred HHHHhhcCCCccchhhhhhhhhheeee
Q 027688 138 VATAMYFNVPGEYLFIGAAVFVTIFTV 164 (220)
Q Consensus 138 i~aGm~FnvPgEYLfiga~lFi~vFci 164 (220)
|+.|+..||.|- |.|++++.+|.||+
T Consensus 50 IVIGvVVGVGg~-ill~il~lvf~~c~ 75 (154)
T PF04478_consen 50 IVIGVVVGVGGP-ILLGILALVFIFCI 75 (154)
T ss_pred EEEEEEecccHH-HHHHHHHhheeEEE
Confidence 568999999884 45777788889997
No 5
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=48.68 E-value=5.7 Score=31.80 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=28.3
Q ss_pred cCCCchhhhhhhhhhHHHHHHhhcCCCccchhhhhhhhhheeeeeee
Q 027688 121 ECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIEL 167 (220)
Q Consensus 121 epp~GfQg~ISWlFlPai~aGm~FnvPgEYLfiga~lFi~vFciIEM 167 (220)
-+|.||.-+|.=+.+..++.|++|- ..|| -.++.|+++|+
T Consensus 7 Ls~~g~~~~~~~~~~~~~~~a~~f~------~~Ga-W~Vl~F~glev 46 (140)
T PF10003_consen 7 LSPRGFLIFIAILAAVSLIIAIAFL------LMGA-WPVLPFAGLEV 46 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH------Hhch-HHHHHHHHHHH
Confidence 3578888888888888888887774 4444 55666666665
No 6
>PRK09917 hypothetical protein; Provisional
Probab=42.30 E-value=18 Score=29.99 Aligned_cols=26 Identities=42% Similarity=0.339 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHhhcCCCccchhhhhh
Q 027688 131 GWLFLPAVATAMYFNVPGEYLFIGAA 156 (220)
Q Consensus 131 SWlFlPai~aGm~FnvPgEYLfiga~ 156 (220)
-+.|..++..|+.||+|...|...+.
T Consensus 15 ~~a~ia~~gFailfn~P~r~l~~~~i 40 (157)
T PRK09917 15 ILAAIPAVGFAMVFNVPVRALRWCAL 40 (157)
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 46788999999999999999986643
No 7
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.70 E-value=15 Score=29.19 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=29.0
Q ss_pred chhhhhhhhhhHHHHHHhhcCC------Cccchhhhhhhhhheee
Q 027688 125 GFQGFIGWLFLPAVATAMYFNV------PGEYLFIGAAVFVTIFT 163 (220)
Q Consensus 125 GfQg~ISWlFlPai~aGm~Fnv------PgEYLfiga~lFi~vFc 163 (220)
|.=+.|+|.+.=.+++|+++|. |+.+.|..+.|++=|+.
T Consensus 43 ~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 43 GMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 3457799999999999999874 77777766666654443
No 8
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=32.54 E-value=13 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=14.4
Q ss_pred hhhhhhhhhheeeeeeeCCCCC
Q 027688 151 LFIGAAVFVTIFTVIELDKPDK 172 (220)
Q Consensus 151 Lfiga~lFi~vFciIEMdKPDK 172 (220)
|=||.++|+ +.|++|+-..++
T Consensus 31 ~~~G~aaf~-~~v~~E~~~~~~ 51 (57)
T PF08122_consen 31 FGIGFAAFA-VYVAVEYFLKSD 51 (57)
T ss_pred cHHHHHHHH-HHHHHHHhccCC
Confidence 457777777 889999544433
No 9
>PRK13899 type IV secretion system protein VirB3; Provisional
Probab=31.72 E-value=18 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=12.6
Q ss_pred HhhcCCCccchhhhhhhhhhe
Q 027688 141 AMYFNVPGEYLFIGAAVFVTI 161 (220)
Q Consensus 141 Gm~FnvPgEYLfiga~lFi~v 161 (220)
.|.+|||-+|+.+-+++.+++
T Consensus 18 am~~GVP~~~~~i~~~~~~l~ 38 (97)
T PRK13899 18 PMIFGVSYKFAALNMIISMMV 38 (97)
T ss_pred HHHhcccHHHHHHHHHHHHHH
Confidence 366788888776554443333
No 10
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.41 E-value=17 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.788 Sum_probs=17.4
Q ss_pred hhcCCCccchhhhhhhhhheeee
Q 027688 142 MYFNVPGEYLFIGAAVFVTIFTV 164 (220)
Q Consensus 142 m~FnvPgEYLfiga~lFi~vFci 164 (220)
=..|++.||+++|++++..+|.+
T Consensus 31 ~~tgv~r~~~~~g~~~l~~v~l~ 53 (186)
T KOG1725|consen 31 KFTGVPREYVFAGAILLLAVYLL 53 (186)
T ss_pred HhhCCchhhhhHHHHHHHHHHHH
Confidence 35789999999998776666644
No 11
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=29.96 E-value=8.9 Score=29.26 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=20.7
Q ss_pred hhhhhcccc-cccccCCcccceecccccc
Q 027688 181 YNMERGARD-KLINDYNTMSIWEFNEKYG 208 (220)
Q Consensus 181 Y~meRgard-kli~dyntm~iwdfnekyg 208 (220)
....|..|| .+++|||.|++-+.-.|||
T Consensus 55 ~~~~~~~R~~~I~~~f~G~n~~eLA~kyg 83 (108)
T PF08765_consen 55 DRLLRALRNREIRREFNGMNVRELARKYG 83 (108)
T ss_dssp HHHHHHHHHHHHHHH--SS-HHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHhCCCCHHHHHHHHC
Confidence 345678888 6779999999999999998
No 12
>COG2361 Uncharacterized conserved protein [Function unknown]
Probab=28.78 E-value=20 Score=29.52 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=18.9
Q ss_pred Chhh-hhhhhcccccccccCCccc
Q 027688 177 EPEI-YNMERGARDKLINDYNTMS 199 (220)
Q Consensus 177 EPeI-Y~meRgardkli~dyntm~ 199 (220)
-||+ ++..+|+||+||-+|=.++
T Consensus 64 ~p~vPW~~magmRd~liH~Yfgvd 87 (117)
T COG2361 64 YPEVPWKEMAGMRDKLIHGYFGVD 87 (117)
T ss_pred CCCCCHHHHHHHHHHHHhhccCCC
Confidence 4444 7889999999999997775
No 13
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=26.07 E-value=39 Score=30.71 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=33.8
Q ss_pred ccccccccccchhhhhHHHHHH-hcCCCchhhhhhhhhhHHHHHHhhcCCCccchhhhhhhh
Q 027688 98 TYHEGGVVTGSFWGAIADDIKA-VECPTGFQGFIGWLFLPAVATAMYFNVPGEYLFIGAAVF 158 (220)
Q Consensus 98 Ty~eg~~~kGtfWe~i~e~~~~-~epp~GfQg~ISWlFlPai~aGm~FnvPgEYLfiga~lF 158 (220)
+-|-=||+.+ ||--. +.. --|+.-|-.=+||++ +++||.|+.+| .|.+|++||
T Consensus 100 VGHAiQd~~~-Y~~L~---~R~~lvPv~~~gSn~a~~l---~i~Gil~~~~~-ll~lGiiLf 153 (226)
T COG2738 100 VGHAIQDQED-YAFLV---LRHALVPVANFGSNLAPLL---FILGILLGSTG-LLWLGIILF 153 (226)
T ss_pred hhHHHhhhcc-cHHHH---HhhcccceeccccchhHHH---HHHHHHHcchH-HHHHHHHHH
Confidence 3444554444 65432 222 257777777788886 58999999998 555665555
No 14
>PRK13499 rhamnose-proton symporter; Provisional
Probab=24.38 E-value=33 Score=32.05 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=33.7
Q ss_pred hhhhhhhhHHHHHHhh-------cCCCccch--------hhhhhhhhheeeeeeeCC
Q 027688 128 GFIGWLFLPAVATAMY-------FNVPGEYL--------FIGAAVFVTIFTVIELDK 169 (220)
Q Consensus 128 g~ISWlFlPai~aGm~-------FnvPgEYL--------figa~lFi~vFciIEMdK 169 (220)
++.|+.|-.++.+|+. +|+++.|. ++|+.++.++||.+.|.|
T Consensus 183 gi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k 239 (345)
T PRK13499 183 GIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK 239 (345)
T ss_pred HHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5779999988888873 67777774 367777888999999988
No 15
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=24.07 E-value=29 Score=26.02 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCCccchhhhhhhhh-heeeeeeeCCCCCC---CCCC
Q 027688 145 NVPGEYLFIGAAVFV-TIFTVIELDKPDKP---HNFE 177 (220)
Q Consensus 145 nvPgEYLfiga~lFi-~vFciIEMdKPDKP---HnFE 177 (220)
..||.|+-.-.+||| ++|+.|-.=-|.+| |||+
T Consensus 8 ~~p~d~~~~lLiliis~~f~lI~~l~qq~~~y~HH~d 44 (61)
T PF06692_consen 8 SAPGDYSGPLLILIISFVFFLITSLGQQGNTYVHHFD 44 (61)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhhccCCCeeEEeec
Confidence 579999877777765 56777766666666 5665
No 16
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=23.80 E-value=25 Score=26.62 Aligned_cols=18 Identities=44% Similarity=1.079 Sum_probs=12.1
Q ss_pred cccCCccccee--ccccccc
Q 027688 192 INDYNTMSIWE--FNEKYGH 209 (220)
Q Consensus 192 i~dyntm~iwd--fnekyg~ 209 (220)
++||++++||- |+.-+|+
T Consensus 85 ~~d~~~v~IwC~~f~~~FG~ 104 (108)
T PF10517_consen 85 LDDYKWVSIWCEKFSVNFGH 104 (108)
T ss_pred HHHCCEEEEEehhcCceeeE
Confidence 67888888884 4444443
No 17
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=23.59 E-value=13 Score=31.64 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=22.2
Q ss_pred hhhhhhhcccccccccCCccccee
Q 027688 179 EIYNMERGARDKLINDYNTMSIWE 202 (220)
Q Consensus 179 eIY~meRgardkli~dyntm~iwd 202 (220)
.|...||.||.++=.-|||+.+||
T Consensus 39 NvSaIEkrA~enIekarnTL~l~~ 62 (143)
T COG1356 39 NVSAIEKRALENIEKARNTLLLWE 62 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999997
No 18
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=23.19 E-value=56 Score=26.76 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=9.7
Q ss_pred hheeeeeeeCCCC
Q 027688 159 VTIFTVIELDKPD 171 (220)
Q Consensus 159 i~vFciIEMdKPD 171 (220)
..+|.|++||.|=
T Consensus 182 ~~l~li~~ld~Pf 194 (209)
T PF14023_consen 182 LALFLILDLDNPF 194 (209)
T ss_pred HHHHHHHHhcCCC
Confidence 4567778999984
No 19
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=22.52 E-value=54 Score=30.50 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=25.0
Q ss_pred hhhhhhHHHHHHhhcCCCccchhhhhhhhhheeeeeeeCC--CCCCCCCChhhh
Q 027688 130 IGWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDK--PDKPHNFEPEIY 181 (220)
Q Consensus 130 ISWlFlPai~aGm~FnvPgEYLfiga~lFi~vFciIEMdK--PDKPHnFEPeIY 181 (220)
-+|.|.| +-|.+-=+..-..++||- | .||-||+|=-
T Consensus 125 ~~w~feP---------------~~g~~s~v~gl~Y~~iD~~lg-~P~~ke~~wl 162 (270)
T KOG4363|consen 125 SAWWFEP---------------CCGTASAVKGLLYPCIDGHLG-EPHKKEREWL 162 (270)
T ss_pred hhhhCCc---------------chhHHHHHhhheeeeecccCC-CCCccchhhh
Confidence 4688998 333333345566789996 7 8999999543
No 20
>PF06245 DUF1015: Protein of unknown function (DUF1015); InterPro: IPR008323 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.80 E-value=30 Score=32.23 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=24.8
Q ss_pred ccccccCccccccccccccchhhhhHHHHHHhcCCCchhhhhhhh
Q 027688 89 LYGEYDGAHTYHEGGVVTGSFWGAIADDIKAVECPTGFQGFIGWL 133 (220)
Q Consensus 89 ~yG~~DGhHTy~eg~~~kGtfWe~i~e~~~~~epp~GfQg~ISWl 133 (220)
..=|+||||.|---- .||+..++.-.+..+..++.-+.+.+
T Consensus 203 ~lyIADGHHR~atA~----~~~~~~~~~~~~~~~~~p~~y~l~~l 243 (416)
T PF06245_consen 203 PLYIADGHHRYATAL----AYREERKEQNPEHTGDEPYNYFLMYL 243 (416)
T ss_pred ceEEecCcHHHHHHH----HHHHHHHhhCCCCCCCcCccEEEEEE
Confidence 344789999984332 37777766654334445565555544
No 21
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=21.51 E-value=46 Score=29.35 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=30.8
Q ss_pred eeccCCCccccCCCCCCCcccccccCCCC------CCCCcccccc
Q 027688 56 KLNAGGKLALIEPDLNEDPKDRWATNGVD------PEDFLYGEYD 94 (220)
Q Consensus 56 r~~~aG~l~~IEPDL~EDp~D~~~TnGid------~edF~yG~~D 94 (220)
-+..||+-+-..-=-.|||+|.-.|||.. .++|..-+||
T Consensus 24 GldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwD 68 (185)
T KOG0074|consen 24 GLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWD 68 (185)
T ss_pred ecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEe
Confidence 45677877766666689999999999987 3578888887
No 22
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=20.07 E-value=41 Score=32.90 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=16.0
Q ss_pred cccccccccCCcccceecccc
Q 027688 186 GARDKLINDYNTMSIWEFNEK 206 (220)
Q Consensus 186 gardkli~dyntm~iwdfnek 206 (220)
.-|=-|-.||||+.|||.|-.
T Consensus 291 ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 291 NGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred CCcEEEEeccceEEEEecccc
Confidence 345556679999999999853
Done!