Query 027688
Match_columns 220
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 23:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dwd_A Mandelate racemase/muco 20.6 11 0.00039 32.9 -1.7 31 70-100 359-392 (393)
2 1rr7_A Middle operon regulator 20.3 11 0.00037 29.0 -1.7 48 137-208 55-103 (129)
3 3ukm_A Potassium channel subfa 16.5 64 0.0022 27.9 2.1 56 131-202 9-64 (280)
4 2hzs_I RNA polymerase II media 12.1 59 0.002 20.0 0.5 9 169-177 2-10 (27)
5 2lti_A Astexin1; sidechain-TO- 11.5 69 0.0024 19.6 0.6 7 65-71 5-11 (26)
6 3rdv_A CAP-Gly domain-containi 10.6 99 0.0034 21.8 1.3 12 160-171 30-41 (72)
7 1vf5_E Protein PET L; photosyn 9.9 1.1E+02 0.0037 19.6 1.1 14 134-147 14-27 (32)
8 2h8a_A Microsomal glutathione 9.6 1.7E+02 0.0058 22.3 2.4 28 133-160 84-111 (154)
9 1whl_A Cylindromatosis tumor s 9.4 1.1E+02 0.0037 22.5 1.2 11 161-171 44-54 (95)
10 2cp3_A CLIP-115, KIAA0291; mic 9.3 1.2E+02 0.0042 22.0 1.4 11 161-171 36-46 (84)
No 1
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=20.62 E-value=11 Score=32.93 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=8.8
Q ss_pred CCCCcccccccC---CCCCCCCccccccCccccc
Q 027688 70 LNEDPKDRWATN---GVDPEDFLYGEYDGAHTYH 100 (220)
Q Consensus 70 L~EDp~D~~~Tn---Gid~edF~yG~~DGhHTy~ 100 (220)
++||-+.+++.. |-+-+-+..|-|.|||.-|
T Consensus 359 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T 4dwd_A 359 VDEDELASRATEITVGRDQRPPAGGQYEGHHHHH 392 (393)
T ss_dssp BCHHHHHHHEEEECCC------------------
T ss_pred cCHHHHHhccccccccccccCccccccccccccC
Confidence 457777777655 6667899999999999765
No 2
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=20.30 E-value=11 Score=28.97 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCccchhhhhhhhhheeeeeeeCCCCCCCCCChhhhhhhhccccccc-ccCCcccceecccccc
Q 027688 137 AVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLI-NDYNTMSIWEFNEKYG 208 (220)
Q Consensus 137 ai~aGm~FnvPgEYLfiga~lFi~vFciIEMdKPDKPHnFEPeIY~meRgardkli-~dyntm~iwdfnekyg 208 (220)
.++.-+.=-.-|+||||=...- .+|..|++.| ++||-+++-+.-+|||
T Consensus 55 e~~~~L~~~~gG~~iYIPk~~~------------------------~~~~~Rn~~I~~~f~G~n~~eLArkYg 103 (129)
T 1rr7_A 55 EIVVAICKHLGGGQVYIPRGQA------------------------LDSLIRDLRIWNDFNGRNVSELTTRYG 103 (129)
T ss_dssp HHHHHHHHHHCSSCCCCCCSHH------------------------HHHHHHHHHHHHHCCSSCHHHHHHHHT
T ss_pred HHHHHHHHHHCCeeEEeeCCch------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHC
Confidence 5555555555678887743322 5667787655 6799999999999998
No 3
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=16.50 E-value=64 Score=27.91 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHhhcCCCccchhhhhhhhhheeeeeeeCCCCCCCCCChhhhhhhhcccccccccCCccccee
Q 027688 131 GWLFLPAVATAMYFNVPGEYLFIGAAVFVTIFTVIELDKPDKPHNFEPEIYNMERGARDKLINDYNTMSIWE 202 (220)
Q Consensus 131 SWlFlPai~aGm~FnvPgEYLfiga~lFi~vFciIEMdKPDKPHnFEPeIY~meRgardkli~dyntm~iwd 202 (220)
||..+..++++... ||.+||++|-. +|-+. |.+.-..=+..|.+++++|+.++--|
T Consensus 9 ~~~~l~lLil~~~~-----Yl~~GA~vF~~----LE~p~-------E~~~r~~~~~~~~~fl~~~~~~s~~~ 64 (280)
T 3ukm_A 9 SATMFGFLVLGYLL-----YLVFGAVVFSS----VELPY-------EDLLRQELRKLKRRFLEEHECLSEQQ 64 (280)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHH----HhCcc-------HHHHHHHHHHHHHHHHHhcccccHHH
Confidence 66777667766654 99999998764 45321 23332223345556666655444433
No 4
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=12.08 E-value=59 Score=20.04 Aligned_cols=9 Identities=56% Similarity=1.058 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 027688 169 KPDKPHNFE 177 (220)
Q Consensus 169 KPDKPHnFE 177 (220)
||.||+|-+
T Consensus 2 kpskpfnvd 10 (27)
T 2hzs_I 2 KPSKPFNVD 10 (27)
T ss_dssp ----CCCHH
T ss_pred CCCCCcChh
Confidence 899998864
No 5
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=11.47 E-value=69 Score=19.59 Aligned_cols=7 Identities=43% Similarity=0.847 Sum_probs=4.9
Q ss_pred ccCCCCC
Q 027688 65 LIEPDLN 71 (220)
Q Consensus 65 ~IEPDL~ 71 (220)
+||||+-
T Consensus 5 gvepdig 11 (26)
T 2lti_A 5 GVEPDIG 11 (26)
T ss_dssp SSSCCBB
T ss_pred ccCCCcc
Confidence 5788764
No 6
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=10.56 E-value=99 Score=21.80 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=9.8
Q ss_pred heeeeeeeCCCC
Q 027688 160 TIFTVIELDKPD 171 (220)
Q Consensus 160 ~vFciIEMdKPD 171 (220)
=.+++||+|.|.
T Consensus 30 g~w~GVeld~p~ 41 (72)
T 3rdv_A 30 GQWAGIVLDEPI 41 (72)
T ss_dssp SCEEEEEESSSC
T ss_pred ceEEEEEECCCC
Confidence 367999999885
No 7
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=9.87 E-value=1.1e+02 Score=19.56 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=10.1
Q ss_pred hhHHHHHHhhcCCC
Q 027688 134 FLPAVATAMYFNVP 147 (220)
Q Consensus 134 FlPai~aGm~FnvP 147 (220)
+.-++++|++||.-
T Consensus 14 ~~f~iA~GL~fGlr 27 (32)
T 1vf5_E 14 LFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 34578889888854
No 8
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=9.60 E-value=1.7e+02 Score=22.27 Aligned_cols=28 Identities=18% Similarity=-0.012 Sum_probs=18.8
Q ss_pred hhhHHHHHHhhcCCCccchhhhhhhhhh
Q 027688 133 LFLPAVATAMYFNVPGEYLFIGAAVFVT 160 (220)
Q Consensus 133 lFlPai~aGm~FnvPgEYLfiga~lFi~ 160 (220)
+|++++++....|++....-+.+.+|++
T Consensus 84 ~F~~~~ll~~~~g~~~~~~~~l~~~~v~ 111 (154)
T 2h8a_A 84 PFLGIGLLYSLSGPDLSTALIHFRIFVG 111 (154)
T ss_dssp HHHHHHHHTTTSCCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4666777677777777766666666654
No 9
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=9.40 E-value=1.1e+02 Score=22.51 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=9.5
Q ss_pred eeeeeeeCCCC
Q 027688 161 IFTVIELDKPD 171 (220)
Q Consensus 161 vFciIEMdKPD 171 (220)
.+++||+|.|.
T Consensus 44 ~wvGVElDep~ 54 (95)
T 1whl_A 44 IFFGVELLEEG 54 (95)
T ss_dssp CCEEEEECSSS
T ss_pred eEEEEEeCCCc
Confidence 67999999995
No 10
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=9.27 E-value=1.2e+02 Score=21.98 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=9.4
Q ss_pred eeeeeeeCCCC
Q 027688 161 IFTVIELDKPD 171 (220)
Q Consensus 161 vFciIEMdKPD 171 (220)
.+++||+|.|.
T Consensus 36 ~wvGVelDep~ 46 (84)
T 2cp3_A 36 EWCGVELDEPL 46 (84)
T ss_dssp EEEEEEESSSC
T ss_pred eEEEEEeCCCC
Confidence 67999999984
Done!