Query 027688
Match_columns 220
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 23:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027688.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027688hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tbna_ g.49.1.1 (A:) Protein 70.3 0.44 3.2E-05 30.9 0.1 17 166-182 1-17 (66)
2 d1q46a1 a.60.14.1 (A:89-175) E 21.2 5.5 0.0004 28.2 -1.3 21 192-212 34-54 (87)
3 d1ri6a_ b.69.11.1 (A:) Putativ 19.8 8.6 0.00062 26.7 -0.5 15 196-210 298-312 (333)
4 d1xa6a3 g.49.1.1 (A:209-270) B 17.8 15 0.0011 22.9 0.4 12 171-182 2-13 (62)
5 d1whja_ b.34.10.1 (A:) Restin- 16.8 24 0.0018 24.9 1.4 11 161-171 53-63 (102)
6 d1whha_ b.34.10.1 (A:) CLIP170 16.0 32 0.0023 24.3 1.9 11 161-171 54-64 (102)
7 d1jb0i_ f.23.17.1 (I:) Subunit 15.4 31 0.0022 21.3 1.4 12 129-140 9-20 (38)
8 d1v54g_ f.23.2.1 (G:) Mitochon 14.6 23 0.0017 24.7 0.8 21 82-104 54-74 (84)
9 d2e3ha1 b.34.10.1 (A:212-282) 13.5 41 0.003 22.2 1.8 11 161-171 29-39 (71)
10 d2cp6a1 b.34.10.1 (A:8-167) Re 12.7 41 0.003 24.8 1.8 14 161-174 60-73 (160)
No 1
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=70.32 E-value=0.44 Score=30.89 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.7
Q ss_pred eeCCCCCCCCCChhhhh
Q 027688 166 ELDKPDKPHNFEPEIYN 182 (220)
Q Consensus 166 EMdKPDKPHnFEPeIY~ 182 (220)
|+|.|-+||+|++..|.
T Consensus 1 ~~d~p~~~H~F~~~~~~ 17 (66)
T d1tbna_ 1 QTDDPRNKHKFRLHSYS 17 (66)
T ss_dssp CCCCCCCSCCEEECCSS
T ss_pred CCCCCCCCCceEEEeCC
Confidence 78999999999887653
No 2
>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.24 E-value=5.5 Score=28.15 Aligned_cols=21 Identities=19% Similarity=0.721 Sum_probs=16.6
Q ss_pred cccCCcccceecccccccccc
Q 027688 192 INDYNTMSIWEFNEKYGHLWD 212 (220)
Q Consensus 192 i~dyntm~iwdfnekyg~lwd 212 (220)
+.+-...-.|-|++|||+.+|
T Consensus 34 lEeLy~~iaWpL~~kyG~ayd 54 (87)
T d1q46a1 34 LEELYKTIAWPLSRKFGHAYE 54 (87)
T ss_dssp HHHHHHHTHHHHHHHHSSHHH
T ss_pred HHHHHHHHhhhhHhhcchHHH
Confidence 344455678999999999988
No 3
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}
Probab=19.79 E-value=8.6 Score=26.69 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.0
Q ss_pred Ccccceecccccccc
Q 027688 196 NTMSIWEFNEKYGHL 210 (220)
Q Consensus 196 ntm~iwdfnekyg~l 210 (220)
|+++||++|.+=|.|
T Consensus 298 ~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 298 HHISVYEIVGEQGLL 312 (333)
T ss_dssp CEEEEEEEETTTTEE
T ss_pred CeEEEEEEECCCCcE
Confidence 678888888766654
No 4
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.79 E-value=15 Score=22.91 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.7
Q ss_pred CCCCCCChhhhh
Q 027688 171 DKPHNFEPEIYN 182 (220)
Q Consensus 171 DKPHnFEPeIY~ 182 (220)
+|||+|++..++
T Consensus 2 ~k~H~F~~~~~~ 13 (62)
T d1xa6a3 2 EKTHNFKVHTFR 13 (62)
T ss_dssp CCCCCCCEECCS
T ss_pred CCCCEEEEeeCC
Confidence 689999987654
No 5
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.81 E-value=24 Score=24.90 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=8.5
Q ss_pred eeeeeeeCCCC
Q 027688 161 IFTVIELDKPD 171 (220)
Q Consensus 161 vFciIEMdKPD 171 (220)
+||+||||.|.
T Consensus 53 ~~vGVeldep~ 63 (102)
T d1whja_ 53 QWAGIELDEPE 63 (102)
T ss_dssp EEEEEEESSSC
T ss_pred cEEEEEECCCC
Confidence 57889998774
No 6
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.98 E-value=32 Score=24.27 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=8.3
Q ss_pred eeeeeeeCCCC
Q 027688 161 IFTVIELDKPD 171 (220)
Q Consensus 161 vFciIEMdKPD 171 (220)
+||+||||.|.
T Consensus 54 ~~~GVEld~p~ 64 (102)
T d1whha_ 54 YWYGIELDQPT 64 (102)
T ss_dssp EEEEEECSSSC
T ss_pred eEEEEEeCCCC
Confidence 57888888764
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=15.36 E-value=31 Score=21.32 Aligned_cols=12 Identities=42% Similarity=1.196 Sum_probs=6.1
Q ss_pred hhhhhhhHHHHH
Q 027688 129 FIGWLFLPAVAT 140 (220)
Q Consensus 129 ~ISWlFlPai~a 140 (220)
+.-|+|.|.+.-
T Consensus 9 yLPwI~iPvv~w 20 (38)
T d1jb0i_ 9 FLPWIFIPVVCW 20 (38)
T ss_dssp THHHHHHHHHHT
T ss_pred hcchhHHHHHHH
Confidence 345666555443
No 8
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.64 E-value=23 Score=24.69 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=15.9
Q ss_pred CCCCCCCccccccCccccccccc
Q 027688 82 GVDPEDFLYGEYDGAHTYHEGGV 104 (220)
Q Consensus 82 Gid~edF~yG~~DGhHTy~eg~~ 104 (220)
.|---.|+|| ||-||.|-+.+
T Consensus 54 ~IR~K~FpWG--DG~~tLFhN~~ 74 (84)
T d1v54g_ 54 RIRTKPFSWG--DGNHTFFHNPR 74 (84)
T ss_dssp SCCSSCCSST--TSSSCTTCCTT
T ss_pred hhhccccCCC--CCCcccccCCc
Confidence 3444589999 99999887753
No 9
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=41 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=9.1
Q ss_pred eeeeeeeCCCC
Q 027688 161 IFTVIELDKPD 171 (220)
Q Consensus 161 vFciIEMdKPD 171 (220)
.+|+||||.|-
T Consensus 29 ~~~GVeld~~~ 39 (71)
T d2e3ha1 29 EWCGVELDEPL 39 (71)
T ss_dssp EEEEEEESSSC
T ss_pred CEEEEEECCCC
Confidence 58999999873
No 10
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.66 E-value=41 Score=24.79 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=10.6
Q ss_pred eeeeeeeCCCCCCC
Q 027688 161 IFTVIELDKPDKPH 174 (220)
Q Consensus 161 vFciIEMdKPDKPH 174 (220)
.||+||||.|.-=|
T Consensus 60 ~wvGVELd~p~GKN 73 (160)
T d2cp6a1 60 EWCGVELDEPLGKN 73 (160)
T ss_dssp EEEEEEESSSCCSB
T ss_pred CEEEEEeCCCCCCC
Confidence 47899999986544
Done!