Query 027689
Match_columns 220
No_of_seqs 70 out of 72
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 13:42:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14736 N_Asn_amidohyd: Prote 100.0 5E-63 1.1E-67 442.7 17.7 153 42-220 1-158 (274)
2 PRK13490 chemoreceptor glutami 96.8 0.0094 2E-07 50.5 8.9 106 62-181 4-125 (162)
3 PRK13498 chemoreceptor glutami 96.8 0.01 2.2E-07 50.5 9.0 109 61-182 7-129 (167)
4 PRK13493 chemoreceptor glutami 96.6 0.03 6.4E-07 49.6 10.8 103 61-182 28-153 (213)
5 PRK13495 chemoreceptor glutami 96.6 0.015 3.3E-07 49.2 8.5 101 64-182 4-119 (159)
6 PRK13494 chemoreceptor glutami 96.4 0.021 4.6E-07 48.6 8.6 103 61-181 11-127 (163)
7 PRK13497 chemoreceptor glutami 96.3 0.029 6.4E-07 48.6 8.8 105 60-183 6-127 (184)
8 PRK13489 chemoreceptor glutami 96.2 0.028 6.1E-07 50.5 8.5 105 61-182 18-139 (233)
9 PRK13491 chemoreceptor glutami 96.1 0.041 8.8E-07 48.5 9.0 103 60-181 12-128 (199)
10 PRK13488 chemoreceptor glutami 96.1 0.041 8.9E-07 46.4 8.7 114 62-193 2-130 (157)
11 COG1871 CheD Chemotaxis protei 96.1 0.027 5.9E-07 48.4 7.4 105 60-181 6-127 (164)
12 PRK13487 chemoreceptor glutami 95.5 0.11 2.3E-06 45.7 9.0 115 61-194 21-151 (201)
13 PF03975 CheD: CheD chemotacti 49.2 21 0.00046 28.1 3.3 74 111-196 16-90 (114)
14 PF04308 DUF458: Protein of un 32.6 2.3E+02 0.0049 24.0 7.1 64 79-142 20-104 (144)
15 PF07369 DUF1488: Protein of u 23.3 57 0.0012 23.8 1.7 45 2-46 21-72 (83)
No 1
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=100.00 E-value=5e-63 Score=442.71 Aligned_cols=153 Identities=36% Similarity=0.601 Sum_probs=146.8
Q ss_pred hhccCceeEeecCCCCCCCCeEEEEeceeeEEecCC--ceeeeecCCCceeeEEEEEeCCCCceEEEeccCCchhhHHHH
Q 027689 42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC 119 (220)
Q Consensus 42 ~l~~~p~~~v~~~~e~s~~~~lLYV~QRE~A~t~P~--~V~ilGSDdATTChivVlRhtgsGatslaH~Dgs~~V~~~v~ 119 (220)
+|+++|.+.++ |+|+|||+|||||||+|+ +|+|||||||||||||||||++|||||||||||+++ +++|+
T Consensus 1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~ 72 (274)
T PF14736_consen 1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA 72 (274)
T ss_pred CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence 58999999999 999999999999999999 699999999999999999999999999999999997 99999
Q ss_pred HHHHhh---cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEeccCCc
Q 027689 120 QMLSLV---VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNT 196 (220)
Q Consensus 120 ~ml~~l---~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV~~lNt 196 (220)
+|++++ +.++.++||||||||||+|+ +|||++||.+||++|||++++|||+||||+++||
T Consensus 73 ~ml~~v~~~~~~~~~~~lelhLVGGF~D~-----------------~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt 135 (274)
T PF14736_consen 73 QMLSSVQSLSNGYPEGRLELHLVGGFDDD-----------------RGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNT 135 (274)
T ss_pred HHHHHHHhhccCCCCCceEEEEEccccCc-----------------ccchHHHHHHHHHHHHcCcceEEEEEEEEccCCC
Confidence 999996 44668999999999999999 9999999999999999999999999999999999
Q ss_pred cccCCCCCcceEeeEEEEEeeCCC
Q 027689 197 KRDSQGNAYPIFHGFLCKILLNGI 220 (220)
Q Consensus 197 ~~~~~g~~~PIiyGi~Vni~~~~~ 220 (220)
++++ |++|||||||+||++||+|
T Consensus 136 ~~~~-g~~~Pii~Gi~VnvkTG~I 158 (274)
T PF14736_consen 136 RVED-GIHRPIIYGIAVNVKTGEI 158 (274)
T ss_pred ccCC-CccCcEEEEEEEEecCCeE
Confidence 8885 9999999999999999986
No 2
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.79 E-value=0.0094 Score=50.47 Aligned_cols=106 Identities=12% Similarity=0.177 Sum_probs=76.0
Q ss_pred eEEEEeceeeEEe-cCC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccC------------CchhhHHHHHHHHhh-
Q 027689 62 KYVYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN------------PEIVDIGLCQMLSLV- 125 (220)
Q Consensus 62 ~lLYV~QRE~A~t-~P~-~V~i-lGSDdATTChivVlRhtgsGatslaH~Dg------------s~~V~~~v~~ml~~l- 125 (220)
..++|...||+++ .|. -..+ ||| |+.|+|.++..+.-.|+|+== ..+++.|+..|++.+
T Consensus 4 ~~i~v~ige~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Li~~m~ 78 (162)
T PRK13490 4 KEIKVGIADLNVAKSPDKIITVGLGS-----CIGIALYDGIKCIGGLSHIMLPDSTQFSNVTNPMKFADLAIPILIEKME 78 (162)
T ss_pred cEEEEEeCCEEEECCCCEEEEEcCcc-----eEEEEEEcCCCCEEEEEEEECCCCccCCCCCCCccCHHHHHHHHHHHHH
Confidence 3678999999999 577 3555 786 999999999999999999721 235789999999996
Q ss_pred cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhccc
Q 027689 126 VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ 181 (220)
Q Consensus 126 ~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~ 181 (220)
..+....+|++.|.||-+=-... . . .......++......+.|.+..
T Consensus 79 ~~Ga~~~~l~aKifGGA~m~~~~-----~---~-~~~~~IG~rNv~~a~~~L~~~g 125 (162)
T PRK13490 79 KLGANKRNLKAKIAGGASMFNFS-----D---K-SMVMDIGNRNGKAVKKKLKELS 125 (162)
T ss_pred HcCCCHHHEEEEEEeCccccCCC-----C---c-cccCChhHHHHHHHHHHHHHcC
Confidence 44666789999999996532100 0 0 0013455677777777777654
No 3
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.77 E-value=0.01 Score=50.54 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=77.3
Q ss_pred CeEEEEeceeeEEec-CC-ceeeeecCCCceeeEEEEEeCCCCceEEEeccC-----------CchhhHHHHHHHHhh-c
Q 027689 61 SKYVYVFQREYATVD-PA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-----------PEIVDIGLCQMLSLV-V 126 (220)
Q Consensus 61 ~~lLYV~QRE~A~t~-P~-~V~ilGSDdATTChivVlRhtgsGatslaH~Dg-----------s~~V~~~v~~ml~~l-~ 126 (220)
...+||.+.||+++. |. -..+||| |+.|+|.++..+.-.|+|+== ...++.++..|++.+ .
T Consensus 7 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 81 (167)
T PRK13498 7 TKEIVLQPGEVVFATRPTRLRTLLGS-----CVAITFWHPQQHIGGMCHFMLPGRIRKHQPLDGRYADEAMELLIRHALA 81 (167)
T ss_pred ceEEEEeCCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcCcHHHHHHHHHHHHHH
Confidence 457899999999985 55 3566886 999999999999999999832 234789999999986 4
Q ss_pred CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccc
Q 027689 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQE 182 (220)
Q Consensus 127 ~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~ 182 (220)
.+....+|++.|.||-.=-.....+ .......++......+.|++...
T Consensus 82 ~Ga~~~~l~aKifGGA~m~~~~~~~--------~~~~~IG~rNi~~a~~~L~~~gi 129 (167)
T PRK13498 82 NGTPPEDYQVKLFGGGNMFPELQQD--------LHTLNVADKNIHAALALAEQNGL 129 (167)
T ss_pred cCCCHHHEEEEEEECcccccccccC--------cccCChHHHHHHHHHHHHHHCCC
Confidence 4666779999999994432100000 00134556777777777776543
No 4
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.58 E-value=0.03 Score=49.58 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=76.3
Q ss_pred CeEEEEeceeeEEec-CCcee-eeecCCCceeeEEEEEeCCCCceEEEeccC--------------------CchhhHHH
Q 027689 61 SKYVYVFQREYATVD-PALVD-YVGTDEATTCVGLVIRNRRNRMTSIAHMDN--------------------PEIVDIGL 118 (220)
Q Consensus 61 ~~lLYV~QRE~A~t~-P~~V~-ilGSDdATTChivVlRhtgsGatslaH~Dg--------------------s~~V~~~v 118 (220)
...++|...|++++. |..+. +||| |+.|+|+++..+.-.|+|+== ...++.++
T Consensus 28 ~~~v~l~pGe~~v~~~~~~itT~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~~~~~~~~rY~d~Am 102 (213)
T PRK13493 28 RHWVKVMPGGVYATSDQEIIHTGLGS-----CVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALLSDSSRYGCYAM 102 (213)
T ss_pred ceEEEEecCeEEEECCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEEcCCCcccCccccccccccCCccccHHHHH
Confidence 457889999999985 44443 4776 999999999999999999721 23467799
Q ss_pred HHHHHhh-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccc
Q 027689 119 CQMLSLV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQE 182 (220)
Q Consensus 119 ~~ml~~l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~ 182 (220)
..|++.+ ..+....+|++.|.||=+=-.. .....++......+.|.+...
T Consensus 103 ~~Li~~m~~~Ga~~~~l~aKifGGA~m~~~--------------~~~IG~rNi~~a~~~L~~~gI 153 (213)
T PRK13493 103 EVLINRLLSMGAERERLKFKLFGGAHLMGY--------------QSLVGEKNVEFVLEYAKREKL 153 (213)
T ss_pred HHHHHHHHHcCCCHHHeEEEEEeCcccccc--------------cccHhHHHHHHHHHHHHHcCC
Confidence 9999986 4566677999999999653310 024667777777777776543
No 5
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.56 E-value=0.015 Score=49.19 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=75.1
Q ss_pred EEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccC-----------CchhhHHHHHHHHhh-cCC
Q 027689 64 VYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN-----------PEIVDIGLCQMLSLV-VDH 128 (220)
Q Consensus 64 LYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGatslaH~Dg-----------s~~V~~~v~~ml~~l-~~~ 128 (220)
+||.+.||++.. |. -..+ ||| |+.|+|.++..+.-.|+|+== ...++.++..|++.+ ..+
T Consensus 4 v~v~~Ge~~v~~~p~~l~T~~LGS-----CVaV~l~Dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~Li~~m~~~G 78 (159)
T PRK13495 4 KVIGIGEYAVMKNPGVIVTLGLGS-----CVGVCMRDPVAKVGAMAHVMLPDSGGKETDKPGKYADTAIKTLVEELKKMG 78 (159)
T ss_pred EEEecCcEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHcC
Confidence 689999999984 55 3554 886 999999999999999999722 234789999999996 446
Q ss_pred CCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccc
Q 027689 129 DLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQE 182 (220)
Q Consensus 129 ~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~ 182 (220)
....+|++.|.||=.=-... .....++......+.|++...
T Consensus 79 a~~~~l~aKifGGA~m~~~~-------------~~~IG~rNi~~a~~~L~~~gI 119 (159)
T PRK13495 79 AKVERLEAKIAGGASMFESS-------------GMNIGARNVEAVKKHLKDFGI 119 (159)
T ss_pred CCHHHEEEEEEeCCccCCCC-------------CCChHHHHHHHHHHHHHHcCC
Confidence 66789999999996544110 134556777777777776543
No 6
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.42 E-value=0.021 Score=48.63 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=76.2
Q ss_pred CeEEEEeceeeEEecCC-ceeeeecCCCceeeEEEEEeCCCCceEEEeccCC------------chhhHHHHHHHHhh-c
Q 027689 61 SKYVYVFQREYATVDPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP------------EIVDIGLCQMLSLV-V 126 (220)
Q Consensus 61 ~~lLYV~QRE~A~t~P~-~V~ilGSDdATTChivVlRhtgsGatslaH~Dgs------------~~V~~~v~~ml~~l-~ 126 (220)
--.+|+.+.|+++..+. -..+||| |+.|+|.++..+.-.|+|+==| ..++.+++.|++.+ .
T Consensus 11 ~~~~~l~~Ge~~v~~~~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 85 (163)
T PRK13494 11 RDVTIIVPGEAFVSNDRVISTILGS-----CVAVVLYDESRNLIGMNHYVLVKSDLVISPLQRGRYGVYAIPMLIDAMLE 85 (163)
T ss_pred ccEEEEecCeEEEeCCcEEEEeCcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 34588999999999875 3455775 9999999999999999997433 23689999999986 4
Q ss_pred CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhccc
Q 027689 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ 181 (220)
Q Consensus 127 ~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~ 181 (220)
.+....+|++.|.||=.=-... ......+......+.|.+..
T Consensus 86 ~Ga~~~~l~aKifGGa~m~~~~-------------~~~IG~rNv~~a~~~L~~~g 127 (163)
T PRK13494 86 NGASKSNLKAKLFGGTNFMAKG-------------TIKVGLENSEFAVNTLNKYG 127 (163)
T ss_pred cCCCHHHeEEEEEeCcccCCcc-------------cCChHHHHHHHHHHHHHHcC
Confidence 5666789999999995533100 13455677777777776644
No 7
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.26 E-value=0.029 Score=48.56 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCeEEEEeceeeEEec-CC-ce-eeeecCCCceeeEEEEEeCCCCceEEEeccC-------------CchhhHHHHHHHH
Q 027689 60 PSKYVYVFQREYATVD-PA-LV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (220)
Q Consensus 60 ~~~lLYV~QRE~A~t~-P~-~V-~ilGSDdATTChivVlRhtgsGatslaH~Dg-------------s~~V~~~v~~ml~ 123 (220)
..+-+||.+.||+++. |. .+ .+||| |+.|+|.++..+.-.|+|+== ...++.++..|++
T Consensus 6 ~~~~v~v~~Ge~~v~~~p~~~itt~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~ai~~Li~ 80 (184)
T PRK13497 6 AARRVHIIQGEYKVVNDPNVVLSTILGS-----CVAACLRDPVAGVGGMNHFLLPGSATSPTSGGDATRYGVHLMELLIN 80 (184)
T ss_pred cCceEEEecCcEEEECCCCEEEEEeCcc-----ceEEEEEcCCCCEEEEEEEECCCCCCcCCCCCCccchHHHHHHHHHH
Confidence 3668999999999985 65 33 45886 999999999999999999721 2246889999999
Q ss_pred hh-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccce
Q 027689 124 LV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEK 183 (220)
Q Consensus 124 ~l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ 183 (220)
.+ ..+....+|++.|.||-.=-.. .....++......+.|++....
T Consensus 81 ~m~~~Ga~~~~l~aKifGGA~m~~~--------------~~~IG~rNi~~a~~~L~~~gI~ 127 (184)
T PRK13497 81 GLLKQGARRDRLEAKIFGGAKTIAT--------------FSNVGEQNAAFAMQFLRDEGIP 127 (184)
T ss_pred HHHHcCCCHHHEEEEEEeCchhccc--------------cccHHHHHHHHHHHHHHHcCCc
Confidence 86 4466678999999999653210 1345667777777777765543
No 8
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.18 E-value=0.028 Score=50.52 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=77.1
Q ss_pred CeEEEEeceeeEEecCC-c-eeeeecCCCceeeEEEEEeCCCCceEEEeccCC--------------chhhHHHHHHHHh
Q 027689 61 SKYVYVFQREYATVDPA-L-VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP--------------EIVDIGLCQMLSL 124 (220)
Q Consensus 61 ~~lLYV~QRE~A~t~P~-~-V~ilGSDdATTChivVlRhtgsGatslaH~Dgs--------------~~V~~~v~~ml~~ 124 (220)
...++|.+.||+++.+. . ..+||| |+.|+|+++..+.-.|.|+==| .+.+.++..|++.
T Consensus 18 ~~~v~l~pGE~~Vs~~~~vItTvLGS-----CVaV~LyDp~~~IGGM~HfmLP~~~~~~~~~~~~~~rYgd~Ame~Li~~ 92 (233)
T PRK13489 18 RPGVKLLPNEFYTTREDMVLVTVLGS-----CVAACLHDPVAGIGGMNHFMLPDDGADAGAAASESMRYGAYAMEVLINE 92 (233)
T ss_pred cceEEEecCeEEEeCCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEECCCCcccCccCCCCCcccHHHHHHHHHHH
Confidence 44688999999999864 2 445776 9999999999999999997211 3568899999998
Q ss_pred h-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccc
Q 027689 125 V-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQE 182 (220)
Q Consensus 125 l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~ 182 (220)
+ ..+....+|++.|.||=.--... ......++...-.++.|++...
T Consensus 93 m~~~Ga~r~~L~AKifGGA~m~~~~------------~~~~IG~RNieaa~~~L~~~gI 139 (233)
T PRK13489 93 LIKAGGRRERFEAKVFGGAAVLAGM------------TTINIGDRNADFVRRYLALERI 139 (233)
T ss_pred HHHcCCCHHHEEEEEEECccccCCC------------CcCChhHHHHHHHHHHHHHcCC
Confidence 6 44666789999999996543110 0134666777777777776543
No 9
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.12 E-value=0.041 Score=48.46 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=76.3
Q ss_pred CCeEEEEeceeeEEe-cCCc--eeeeecCCCceeeEEEEEeCCCCceEEEeccCC----------chhhHHHHHHHHhh-
Q 027689 60 PSKYVYVFQREYATV-DPAL--VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP----------EIVDIGLCQMLSLV- 125 (220)
Q Consensus 60 ~~~lLYV~QRE~A~t-~P~~--V~ilGSDdATTChivVlRhtgsGatslaH~Dgs----------~~V~~~v~~ml~~l- 125 (220)
.-+.+||.+.||+++ .|.. -.+||| |+.|+|.++..+.-.|+|+==| .+++.++..|++.+
T Consensus 12 ~~~~v~V~~Ge~~vs~~p~~litT~LGS-----CVaV~LyDp~~~IGGM~H~mLP~~~~~~~~~~rYgd~Ai~~Li~~m~ 86 (199)
T PRK13491 12 QISITHVTQGSCVASDSPNEVYATILGS-----CICTCMCDPVAGVGGMNHFLLPSADVEDAQHLRYGSHAMELLINALL 86 (199)
T ss_pred eEEEEEEecCcEEEECCCCEEEEEeccc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 356799999999998 4653 345886 9999999999999999998433 35789999999986
Q ss_pred cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhccc
Q 027689 126 VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ 181 (220)
Q Consensus 126 ~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~ 181 (220)
..+....+|++.|.||-.=-.. .....++......+.|.+..
T Consensus 87 ~~Ga~~~~L~AKifGGA~M~~~--------------~~~IG~rNie~a~~~L~~~G 128 (199)
T PRK13491 87 KLGAARQRIEAKIFGGAMMTPQ--------------LGAIGQANAAFARRYLRDEG 128 (199)
T ss_pred HcCCCHHHeEEEEEeCcccccc--------------cccHHHHHHHHHHHHHHHcC
Confidence 4466678999999999653310 02345566666666666544
No 10
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.11 E-value=0.041 Score=46.39 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=79.5
Q ss_pred eEEEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccCC-----------chhhHHHHHHHHhh-c
Q 027689 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLV-V 126 (220)
Q Consensus 62 ~lLYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGatslaH~Dgs-----------~~V~~~v~~ml~~l-~ 126 (220)
.-++|.+.||+++. |. -..+ ||| |+.|+|.++..+.-.|.|+==| ..++.++..|++.+ .
T Consensus 2 ~~v~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~li~~m~~ 76 (157)
T PRK13488 2 MVIKVGIGEYAVGKSPEVIETSGLGS-----CVGIILYDRGKKIGGLAHVMLPESSGAGDRNPGKYADTAIPLLIEEMVK 76 (157)
T ss_pred ccEEEecCcEEEECCCCEEEEEcCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 34679999999986 44 3555 676 9999999999999999997333 25789999999986 4
Q ss_pred CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEecc
Q 027689 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLG 193 (220)
Q Consensus 127 ~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV~~ 193 (220)
.+....+|++.|.||=.=-... .......++......+.|++.. |.+..-=+++
T Consensus 77 ~Ga~~~~l~akifGGA~m~~~~-----------~~~~~IG~rNi~~a~~~L~~~g--i~i~a~dvGG 130 (157)
T PRK13488 77 LGARKSKLEAKLAGGAAMFDFS-----------SNNLNIGERNIESAKETLKKLG--IRIVAEDVGG 130 (157)
T ss_pred cCCCHHHEEEEEEeCcccccCC-----------CccCChHHHHHHHHHHHHHHCC--CcEEEEEcCC
Confidence 4666789999999996433100 0113455677777777777654 4444444443
No 11
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.05 E-value=0.027 Score=48.37 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=75.9
Q ss_pred CCeEEEEeceeeEEecC-C--ceeeeecCCCceeeEEEEEeCCCCceEEEeccC-------------CchhhHHHHHHHH
Q 027689 60 PSKYVYVFQREYATVDP-A--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (220)
Q Consensus 60 ~~~lLYV~QRE~A~t~P-~--~V~ilGSDdATTChivVlRhtgsGatslaH~Dg-------------s~~V~~~v~~ml~ 123 (220)
..+.+-|-|.||+++.. . ....||| |+.++||...+|...|.|+== .++.+.++..|++
T Consensus 6 ~~~~v~Vg~ge~~v~~~p~~i~ttgLGS-----CV~v~l~D~~~~vgGm~H~mLP~s~~~~~~~~~~~kY~d~ame~Lin 80 (164)
T COG1871 6 ARKEVKVGIGEYKVTKDPDVIITTGLGS-----CVGVCLRDPVNGVGGMNHFMLPDSALSGSPLSNPAKYGDTAMELLIN 80 (164)
T ss_pred hCCEEEEeeeeEEEecCCCEEEEecccc-----eEEEEEEccccCccceeEEeccCCCCCCCcCCchhhHHHHHHHHHHH
Confidence 46688899999999975 5 4778887 999999999999999999722 3346788888888
Q ss_pred hh-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhccc
Q 027689 124 LV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ 181 (220)
Q Consensus 124 ~l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~ 181 (220)
.| ..+....|||.-|.||-.==. +.+.....++...-..+.|.+..
T Consensus 81 ~ll~~GA~r~rL~AKlfGGa~mf~------------~~s~m~IG~rNv~~~~~~L~~~~ 127 (164)
T COG1871 81 ELLKLGASRERLEAKLFGGAQMFA------------FNSMMKIGERNVEFAKEFLKDEG 127 (164)
T ss_pred HHHHcCCChhhheeeecccHHHHh------------ccchhhhhhHHHHHHHHHHHHcC
Confidence 85 567668899999999942210 00002344566666667666543
No 12
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.47 E-value=0.11 Score=45.70 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=81.7
Q ss_pred CeEEEEeceeeEEec-CC-ceeeeecCCCceeeEEEEEeCCCCceEEEeccCC-------------chhhHHHHHHHHhh
Q 027689 61 SKYVYVFQREYATVD-PA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-------------EIVDIGLCQMLSLV 125 (220)
Q Consensus 61 ~~lLYV~QRE~A~t~-P~-~V~ilGSDdATTChivVlRhtgsGatslaH~Dgs-------------~~V~~~v~~ml~~l 125 (220)
...++|...||+++. |. -..+||| |+.|+|.++..+.-.|+|+==| ..++.++..|++.+
T Consensus 21 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~A~~~Li~~m 95 (201)
T PRK13487 21 CDAAKILPGEYFVTDDDTAIVTVLGS-----CVSACLRDPVLGIGGMNHFMLPDGGDSDGPLSASARYGSYAMELLINDL 95 (201)
T ss_pred cceEEEecCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 446789999999984 55 3556776 9999999999999999997322 24688999999986
Q ss_pred -cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEeccC
Q 027689 126 -VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGH 194 (220)
Q Consensus 126 -~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV~~l 194 (220)
..+....+|++.|.||=.--... ...+...+......+.|++.. |.++.-=+++.
T Consensus 96 ~~~Ga~~~~l~aKlfGGA~m~~~~------------~~~~IG~rNi~~a~~~L~~~g--I~iva~DvGG~ 151 (201)
T PRK13487 96 LKLGARRENLEAKVFGGGNVLRGF------------TSMNVGERNAEFVRDYLQTER--IPIVAEDLLDI 151 (201)
T ss_pred HHcCCCHHHEEEEEEeCCcccCCC------------ccCCchHHHHHHHHHHHHHcC--CcEEEEECCCC
Confidence 44566789999999996543110 013566777777777777654 44444444443
No 13
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=49.15 E-value=21 Score=28.11 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=37.6
Q ss_pred CchhhHHHHHHHHhhc-CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEe
Q 027689 111 PEIVDIGLCQMLSLVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (220)
Q Consensus 111 s~~V~~~v~~ml~~l~-~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~ 189 (220)
..+++.++..|+..+. .+....+|++.|+||=.=-.. . .........+......+.|.+. .|+|.--
T Consensus 16 ~rY~d~ai~~ll~~m~~~Ga~~~~l~aklfGGa~m~~~--~--------~~~~~~IG~rNv~~a~~~L~~~--gi~I~a~ 83 (114)
T PF03975_consen 16 GRYGDTAIELLLDEMEKRGARPSRLEAKLFGGANMFPG--M--------NSSSFNIGERNVEAARELLAEE--GIPIVAE 83 (114)
T ss_dssp CCBHHHHHHHHHHHHHTTT--GGG-EEEEEE----S----------------SS-HHHHHHHHHHHHHHHT--T--EEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCHHHeEEEEeeCcccccc--c--------ccccCCHHHHHHHHHHHHHHHC--CCcEEEe
Confidence 4567999999999974 466688999999999654421 0 0011334445555555555543 4666666
Q ss_pred EeccCCc
Q 027689 190 HVLGHNT 196 (220)
Q Consensus 190 CV~~lNt 196 (220)
=|++..-
T Consensus 84 dvGG~~~ 90 (114)
T PF03975_consen 84 DVGGNFG 90 (114)
T ss_dssp EE-SSS-
T ss_pred eCCCCCC
Confidence 6665443
No 14
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=32.58 E-value=2.3e+02 Score=24.01 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=38.3
Q ss_pred eeeeecCC----CceeeE--EEEEeCCCCceEEEeccCCchh---------hH----HHHHHHHh-hcC-CCCCceeEEE
Q 027689 79 VDYVGTDE----ATTCVG--LVIRNRRNRMTSIAHMDNPEIV---------DI----GLCQMLSL-VVD-HDLDAELDVY 137 (220)
Q Consensus 79 V~ilGSDd----ATTChi--vVlRhtgsGatslaH~Dgs~~V---------~~----~v~~ml~~-l~~-~~~~grLevh 137 (220)
--+||||. -.||-. +||..-|.|+.|.-|-.-.... |. +++..|.. |.. ...+..+|+|
T Consensus 20 ki~IGTDSQ~~~~~T~FvTaIvihR~GkGa~~f~~~~~~r~~~slreRi~~Et~~S~e~A~~l~~~l~~~~~~~~~~EiH 99 (144)
T PF04308_consen 20 KIIIGTDSQVKGDETCFVTAIVIHREGKGARYFYHKKKERKIMSLRERIFYETSLSLEVAEKLCDLLLPYGYADVDLEIH 99 (144)
T ss_pred EEEEecCCCcCCCceEEEEEEEEEEecCceEEEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEE
Confidence 55789996 445643 2223478899999998876651 22 22222222 322 3367899999
Q ss_pred Eeccc
Q 027689 138 LIGGF 142 (220)
Q Consensus 138 LVGGF 142 (220)
|=-|.
T Consensus 100 iDIg~ 104 (144)
T PF04308_consen 100 IDIGT 104 (144)
T ss_pred EEcCC
Confidence 95554
No 15
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=23.34 E-value=57 Score=23.83 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=32.7
Q ss_pred eeeCCEeeecCCCCC------CCCCCchhHHHHHHHhC-chHHHhhhhhccC
Q 027689 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSM 46 (220)
Q Consensus 2 l~v~G~~v~~~~~~~------~~~~~~~~~l~~~l~~h-P~l~~~a~~l~~~ 46 (220)
..|||.++.|.=|.. ...+....++|+.|..| ..++++|.++...
T Consensus 21 a~~~g~~i~C~Is~~aL~~~~~~~~~~~~~~l~~F~~~R~~Ie~~Ae~~i~~ 72 (83)
T PF07369_consen 21 AQVDGMQIRCAISAEALEDLFGARGASEEDLLAAFDRHRFDIEEAAERLIEQ 72 (83)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTS---SHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred EEECCEEEEEEEeHHHHHhhhCcCCCCHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 468899998864432 12467789999999999 7888888888766
Done!