Query 027689
Match_columns 220
No_of_seqs 70 out of 72
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f9z_C Protein (chemotaxis met 96.6 0.0088 3E-07 49.4 8.8 102 62-181 3-118 (159)
2 2gpi_A Conserved hypothetical 45.6 10 0.00036 28.5 2.1 47 2-48 25-78 (91)
3 4dh4_A MIF; trimer, isomerase; 32.1 15 0.00052 27.0 1.1 47 130-191 56-102 (114)
4 2ckc_A Chromodomain-helicase-D 31.0 33 0.0011 25.6 2.7 19 21-39 44-62 (80)
5 1otf_A 4-oxalocrotonate tautom 30.7 16 0.00054 23.3 0.9 43 134-191 3-45 (62)
6 2opa_A Probable tautomerase YW 27.9 18 0.0006 23.1 0.7 43 134-191 3-45 (61)
7 2xcz_A Possible ATLS1-like lig 27.4 29 0.00098 25.3 1.9 46 131-191 57-102 (115)
8 2x4k_A 4-oxalocrotonate tautom 27.2 19 0.00063 22.8 0.7 43 133-190 5-47 (63)
9 3abf_A 4-oxalocrotonate tautom 24.5 16 0.00055 23.5 0.1 41 134-189 4-44 (64)
10 3kan_A D-dopachrome tautomeras 23.5 28 0.00096 26.0 1.2 48 130-191 55-102 (117)
11 2wkb_A Macrophage migration in 23.4 27 0.00092 26.1 1.1 44 131-189 57-100 (125)
12 3b64_A Macrophage migration in 23.3 22 0.00074 25.9 0.6 44 131-189 57-100 (112)
13 3t5s_A Gilaa.00834.A, macropha 21.9 36 0.0012 26.2 1.6 45 130-189 77-121 (135)
14 1hfo_A Migration inhibitory fa 21.7 24 0.00082 25.5 0.5 45 131-190 56-100 (113)
15 3djh_A Macrophage migration in 21.6 22 0.00075 26.2 0.3 46 130-190 55-100 (114)
16 3lax_A Phenylacetate-coenzyme 20.9 27 0.00091 24.9 0.6 27 1-39 6-32 (109)
17 3ry0_A Putative tautomerase; o 20.5 30 0.001 22.8 0.7 43 134-191 3-45 (65)
18 3m21_A Probable tautomerase HP 20.3 29 0.00098 23.0 0.6 42 134-190 3-47 (67)
19 1uiz_A MIF, macrophage migrati 20.3 27 0.00092 25.4 0.5 46 131-191 57-102 (115)
20 2fsu_A Protein PHNH; C-P lyase 20.0 44 0.0015 28.5 1.9 35 131-182 12-46 (210)
No 1
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=96.63 E-value=0.0088 Score=49.41 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=75.5
Q ss_pred eEEEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccC----------CchhhHHHHHHHHhh-cC
Q 027689 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN----------PEIVDIGLCQMLSLV-VD 127 (220)
Q Consensus 62 ~lLYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGatslaH~Dg----------s~~V~~~v~~ml~~l-~~ 127 (220)
..++|.+.||.++. |. -..+ ||| |+.|+|+++..+.-.|+|+== ....+.++..|++.+ ..
T Consensus 3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~ 77 (159)
T 2f9z_C 3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM 77 (159)
T ss_dssp CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence 45789999999876 55 3556 887 999999999999999999832 235678999999886 55
Q ss_pred CCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhccc
Q 027689 128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ 181 (220)
Q Consensus 128 ~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~ 181 (220)
+....+|++.|.||=.=-... .....++......+.|.+..
T Consensus 78 Ga~~~~L~aKifGGA~m~~~~-------------~~~IG~rNv~~a~~~L~~~g 118 (159)
T 2f9z_C 78 GAKVERLEAKIAGGASMFESK-------------GMNIGARNVEAVKKHLKDFG 118 (159)
T ss_dssp TCCGGGCEEEEEECCCCSCCC-------------SSCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHEEEEEEeCcccCccc-------------ccChHHHHHHHHHHHHHHCC
Confidence 666789999999995533100 02355677777777776644
No 2
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=45.60 E-value=10 Score=28.48 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=36.8
Q ss_pred eeeCCEeeecCCCCC------CCCCCchhHHHHHHHhC-chHHHhhhhhccCce
Q 027689 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSMEE 48 (220)
Q Consensus 2 l~v~G~~v~~~~~~~------~~~~~~~~~l~~~l~~h-P~l~~~a~~l~~~p~ 48 (220)
.+|||.++.|.=|.. -.++....++|++|..| ..|.+.|+.|.....
T Consensus 25 A~V~G~~i~C~Is~e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~ 78 (91)
T 2gpi_A 25 AQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEA 78 (91)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred EEeCCeEEEEEEEHHHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHccc
Confidence 368999999874432 22356788999999999 899999999987654
No 3
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=32.06 E-value=15 Score=27.00 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 130 LDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 130 ~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
+..-++|+++||...+ ++ +.++..||.-|-+.|...++.+++.-.=+
T Consensus 56 p~a~v~i~~ig~~~~e-~~--------------~~l~~~i~~~l~~~Lgi~~~riyI~f~d~ 102 (114)
T 4dh4_A 56 PCAFIRVASIGGITSS-TN--------------CKIAAALSAACERHLGVPKNRIYTTFTNK 102 (114)
T ss_dssp CCEEEEEEEESCCCHH-HH--------------HHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred CeEEEEEEEEcCCCHH-HH--------------HHHHHHHHHHHHHHhCcCcccEEEEEEeC
Confidence 3567899999986654 22 67899999999999999999998875433
No 4
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=30.96 E-value=33 Score=25.56 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred CchhHHHHHHHhCchHHHh
Q 027689 21 SQGSDILVALLEHPVLVSA 39 (220)
Q Consensus 21 ~~~~~l~~~l~~hP~l~~~ 39 (220)
....+|+.||++||.|...
T Consensus 44 P~~KdL~dWLrqhP~y~vD 62 (80)
T 2ckc_A 44 PKNKDLVEWLKLHPTYTVD 62 (80)
T ss_dssp CBHHHHHHHHHHCTTEEES
T ss_pred ccccCHHHHHHHCCCcEEe
Confidence 5689999999999998653
No 5
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=30.73 E-value=16 Score=23.34 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=31.5
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
++|++.+|.+++.+ +.++..|+..|.+.|...++++.+.--=+
T Consensus 3 i~I~~~~grs~e~k---------------~~l~~~i~~~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 3 AQLYIIEGRTDEQK---------------ETLIRQVSEAMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp EEEEEESCCCHHHH---------------HHHHHHHHHHHHHHHTCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCHHHH---------------HHHHHHHHHHHHHHhCcCcccEEEEEEEe
Confidence 67889999865522 67888888888888888888776654433
No 6
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=27.92 E-value=18 Score=23.12 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=31.0
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
++|++.+|.+++. | +.++..|+..|.+.|...++++.+.--=+
T Consensus 3 i~i~~~~grs~eq-k--------------~~l~~~i~~~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 3 VTVKMLEGRTDEQ-K--------------RNLVEKVTEAVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp EEEEEESCCCHHH-H--------------HHHHHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCHHH-H--------------HHHHHHHHHHHHHHhCcCcCeEEEEEEEc
Confidence 6788899985552 2 56888888888888888888776654433
No 7
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=27.40 E-value=29 Score=25.28 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=36.0
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
..-++|.++||...+.+ +.++..||..|-+.|...++++.+.-.=+
T Consensus 57 ~~~v~i~~~~g~t~eqk---------------~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 2xcz_A 57 TCYVEVKSIGALDGSRT---------------QEVSELVCGHIEQNLGIPADRIYIGFEDV 102 (115)
T ss_dssp CEEEEEEESSCCCTTHH---------------HHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred EEEEEEEEecCCCHHHH---------------HHHHHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 44688999998876622 67889999999999999999988765433
No 8
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=27.16 E-value=19 Score=22.78 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.6
Q ss_pred eeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeE
Q 027689 133 ELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLH 190 (220)
Q Consensus 133 rLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~C 190 (220)
-++|++.+|..++.+ +.++..|+..|.+.|.+-++.+.+.---
T Consensus 5 ~i~i~~~~g~s~e~k---------------~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 5 IVNVKLLEGRSDEQL---------------KNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp EEEEEEESCCCHHHH---------------HHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred EEEEEEcCCCCHHHH---------------HHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 368889998855521 5688888888888898888876655433
No 9
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=24.54 E-value=16 Score=23.54 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=29.6
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEe
Q 027689 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (220)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~ 189 (220)
++|++.+|..++.+ +.++..|+..|-+.+.+.++.+.+.--
T Consensus 4 i~i~~~~g~s~eqk---------------~~l~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 4 LKVTLLEGRPPEKK---------------RELVRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp EEEEEETTCCHHHH---------------HHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred EEEEECCCCCHHHH---------------HHHHHHHHHHHHHHhCCCcccEEEEEE
Confidence 67888888765522 567788888888888888887765543
No 10
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=23.46 E-value=28 Score=25.98 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 130 LDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 130 ~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
+..-+||+.+|+......+ +.||..||.-|-+.|.-.++.+.+.-.=+
T Consensus 55 P~a~~~v~siG~~~~~~~n--------------~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~ 102 (117)
T 3kan_A 55 PCAQLSISSIGVVGTAEDN--------------RSHSAHFFEFLTKELALGQDRILIRFFPL 102 (117)
T ss_dssp SCEEEEEEEESSSSSHHHH--------------HHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred ceEEEEEEEecCCCcHHHH--------------HHHHHHHHHHHHHHhCcCcCeEEEEEEEc
Confidence 4668999999997542111 67899999999999999999988875543
No 11
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=23.41 E-value=27 Score=26.08 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=31.0
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEe
Q 027689 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (220)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~ 189 (220)
..-++|.++||...+.+ +.++..||..|-+.|...++++.+.-.
T Consensus 57 ~~~v~I~~~~g~t~eqk---------------~~l~~~i~~~l~~~lgi~~~~v~I~~~ 100 (125)
T 2wkb_A 57 YCFVRLTSIGGINRSNN---------------SLLADKITKILSNHLSVKPRRVYIEFR 100 (125)
T ss_dssp CEEEEEECC-----CTH---------------HHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred cEEEEEEECCCCCHHHH---------------HHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 34688888998876632 678899999999999999999887654
No 12
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=23.32 E-value=22 Score=25.89 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=34.3
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEe
Q 027689 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (220)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~ 189 (220)
..-++|.++||...+. | +.++..||..|-+.|...++++++.-.
T Consensus 57 ~~~i~i~~~~g~~~eq-k--------------~~l~~~i~~~l~~~lgi~~~~v~I~~~ 100 (112)
T 3b64_A 57 VACVRVEALGGYGPSE-P--------------EKVTSIVTAAITKECGIVADRIFVLYF 100 (112)
T ss_dssp CEEEEEECTTCCCTTH-H--------------HHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred EEEEEEEEcCCCCHHH-H--------------HHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 4468888888887552 2 678889999999999999999887643
No 13
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=21.91 E-value=36 Score=26.23 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEe
Q 027689 130 LDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (220)
Q Consensus 130 ~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~ 189 (220)
+..-++|..+||...+ .+ +.+|..||.-|-+.|.-.++.+.+.-.
T Consensus 77 p~a~v~i~sig~~t~e-~n--------------~~~s~~i~~~l~~~Lgi~~~riyI~f~ 121 (135)
T 3t5s_A 77 LCCFVDFYCIGVISQA-KN--------------PSISAAITGCLTQHFKVKPERVYISFN 121 (135)
T ss_dssp SCEEEEEECCC------CC--------------HHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred eEEEEEEEEEEEEecc-CC--------------chHHHHHHHHHHHhcccCccEEEEEec
Confidence 3557899999997555 22 688999999999999999999988654
No 14
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.70 E-value=24 Score=25.55 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeE
Q 027689 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLH 190 (220)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~C 190 (220)
..-++|.++||...+.+ +.++..||..|-+.|...++++++.-.=
T Consensus 56 ~~~i~i~~~~g~~~eqk---------------~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 56 AAFGTLMSIGGIEPSRN---------------RDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp CEEEEEEESSSCSHHHH---------------HHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred eEEEEEEEecCCCHHHH---------------HHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 34688888888875521 6788899999999999999998876543
No 15
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=21.56 E-value=22 Score=26.22 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=35.8
Q ss_pred CCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeE
Q 027689 130 LDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLH 190 (220)
Q Consensus 130 ~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~C 190 (220)
+..-+||+.+||...+ .+ +.+|..||.-|-+.|.-.++.+.+.-.=
T Consensus 55 P~a~~~v~sig~~~~~-~n--------------~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 55 PCALCSLHSIGKIGGA-QN--------------RSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp SCEEEEEEESSCCSHH-HH--------------HHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred CEEEEEEEEccCCCHH-HH--------------HHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3567899999996544 22 6789999999999999999998886543
No 16
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=20.89 E-value=27 Score=24.92 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=19.3
Q ss_pred CeeeCCEeeecCCCCCCCCCCchhHHHHHHHhCchHHHh
Q 027689 1 MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSA 39 (220)
Q Consensus 1 ml~v~G~~v~~~~~~~~~~~~~~~~l~~~l~~hP~l~~~ 39 (220)
||.|+|..|-+. |+=..+++||.+.++
T Consensus 6 mIiv~G~nv~P~------------eIE~vl~~~p~v~~~ 32 (109)
T 3lax_A 6 MIILKGVNIFPI------------QIETILLQFKELGSD 32 (109)
T ss_dssp CEEETTEEECHH------------HHHHHHHTCTTEEEE
T ss_pred EEEECCEEECHH------------HHHHHHHhCCCcccc
Confidence 899999988774 333457888876553
No 17
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.48 E-value=30 Score=22.78 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=31.7
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
+.|+|..|.+++.+ +.++..|+..+.+.|...++++.+.---+
T Consensus 3 i~I~~~~Grs~eqk---------------~~L~~~it~~~~~~lg~p~~~v~V~i~e~ 45 (65)
T 3ry0_A 3 IRVTLLEGRSPQEV---------------AALGEALTAAAHETLGTPVEAVRVIVEET 45 (65)
T ss_dssp EEEEEESCCCHHHH---------------HHHHHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred EEEEEcCCCCHHHH---------------HHHHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 57888888766522 67888888888889988888777554433
No 18
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=20.33 E-value=29 Score=23.05 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=31.9
Q ss_pred eEEEEec---ccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeE
Q 027689 134 LDVYLIG---GFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLH 190 (220)
Q Consensus 134 LevhLVG---GF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~C 190 (220)
++|+|.+ |.+++.+ +.+...|+..+.+.|...++++.+.---
T Consensus 3 i~I~~~~~~~grs~eqK---------------~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 3 INIKLVPENGGPTNEQK---------------QQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp EEEEECCBTTBSCHHHH---------------HHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred EEEEEecCCCCCCHHHH---------------HHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 6788887 7777632 6788888888888998888887765433
No 19
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=20.25 E-value=27 Score=25.43 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=35.2
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccceEEEEEeEe
Q 027689 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHV 191 (220)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~ihL~T~CV 191 (220)
..-++|.++||...+.+ +.++..||..|-+.|...++++++.-.=+
T Consensus 57 ~~~v~i~~~~g~~~eqk---------------~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 1uiz_A 57 CAVCSLCSIGKIGGPQN---------------KSYTKLLCDILTKQLNIPANRVYINYYDL 102 (115)
T ss_dssp CEEEEEEESSCCSHHHH---------------HHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred eEEEEEEEecCCCHHHH---------------HHHHHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 44678888888875522 67888999999999999999988765433
No 20
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=20.04 E-value=44 Score=28.50 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=14.9
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHhcccc
Q 027689 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQE 182 (220)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~ 182 (220)
.|.+.+-|.+||.|. -.-++..+..||.+|-+=-.
T Consensus 12 ~~~~~~~l~~gF~dp-----------------v~daQ~~FR~lL~Ams~PG~ 46 (210)
T 2fsu_A 12 SGSMGMTLETAFMLP-----------------VQDAQHSFRRLLKAMSEPGV 46 (210)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHSTTC
T ss_pred CcccceecccccCCc-----------------HHHHHHHHHHHHHHhCCCCc
Confidence 567788889999999 56788999999999876433
Done!