Query 027690
Match_columns 220
No_of_seqs 118 out of 1005
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0811 SNARE protein PEP12/VA 100.0 5.7E-33 1.2E-37 229.7 21.1 214 1-220 1-217 (269)
2 KOG0810 SNARE protein Syntaxin 99.9 9E-27 1.9E-31 196.0 16.7 193 18-220 38-243 (297)
3 KOG0809 SNARE protein TLG2/Syn 99.9 2.4E-24 5.2E-29 176.9 22.6 192 16-220 56-255 (305)
4 COG5325 t-SNARE complex subuni 99.9 9.7E-21 2.1E-25 154.6 16.4 188 18-220 36-232 (283)
5 COG5074 t-SNARE complex subuni 99.8 3.7E-18 8E-23 136.0 13.6 192 18-220 23-222 (280)
6 PF14523 Syntaxin_2: Syntaxin- 99.7 4.9E-16 1.1E-20 112.3 13.5 101 25-125 1-101 (102)
7 smart00503 SynN Syntaxin N-ter 99.6 8.7E-15 1.9E-19 108.0 12.5 106 18-123 6-117 (117)
8 cd00179 SynN Syntaxin N-termin 99.6 6.4E-15 1.4E-19 113.6 10.6 112 18-129 4-122 (151)
9 KOG0812 SNARE protein SED5/Syn 99.6 6.1E-13 1.3E-17 109.4 18.2 193 18-220 43-264 (311)
10 cd00193 t_SNARE Soluble NSF (N 99.1 1.7E-10 3.7E-15 74.7 4.3 41 179-219 2-42 (60)
11 PF00804 Syntaxin: Syntaxin; 99.0 3E-09 6.5E-14 76.2 10.6 91 18-108 5-103 (103)
12 PF05739 SNARE: SNARE domain; 99.0 4.9E-10 1.1E-14 73.6 4.6 40 180-219 1-40 (63)
13 smart00397 t_SNARE Helical reg 99.0 1.7E-09 3.7E-14 71.3 5.8 45 175-219 4-48 (66)
14 KOG3202 SNARE protein TLG1/Syn 93.8 3.3 7.2E-05 34.2 15.3 172 18-218 8-187 (235)
15 PF15605 Toxin_52: Putative to 90.9 4.2 9.2E-05 28.9 8.9 69 5-76 32-100 (103)
16 KOG3894 SNARE protein Syntaxin 77.3 15 0.00033 31.6 7.7 52 167-218 216-267 (316)
17 PF07106 TBPIP: Tat binding pr 70.0 49 0.0011 25.6 11.2 61 18-82 77-137 (169)
18 PF09177 Syntaxin-6_N: Syntaxi 70.0 20 0.00043 25.1 5.9 58 18-82 3-60 (97)
19 PF11598 COMP: Cartilage oligo 68.2 14 0.0003 22.4 4.0 24 187-210 5-28 (45)
20 PF07889 DUF1664: Protein of u 67.8 48 0.001 24.7 7.8 45 175-219 81-125 (126)
21 PF10805 DUF2730: Protein of u 66.0 36 0.00078 24.4 6.6 56 21-80 36-91 (106)
22 PF12325 TMF_TATA_bd: TATA ele 59.1 38 0.00082 25.0 5.7 31 172-202 85-115 (120)
23 PF05531 NPV_P10: Nucleopolyhe 55.5 62 0.0013 21.8 7.9 50 21-70 5-55 (75)
24 PF03310 Cauli_DNA-bind: Cauli 54.8 85 0.0018 23.2 7.7 52 22-73 5-57 (121)
25 COG4575 ElaB Uncharacterized c 54.7 77 0.0017 22.7 7.6 48 25-72 10-59 (104)
26 COG1256 FlgK Flagellar hook-as 54.0 81 0.0017 29.6 8.3 53 57-109 163-215 (552)
27 KOG3065 SNAP-25 (synaptosome-a 50.4 26 0.00057 29.7 4.2 40 180-219 215-254 (273)
28 PF04102 SlyX: SlyX; InterPro 49.4 60 0.0013 21.2 5.0 27 176-202 25-51 (69)
29 PF13747 DUF4164: Domain of un 49.2 87 0.0019 21.7 8.8 60 23-82 4-64 (89)
30 TIGR02492 flgK_ends flagellar 49.1 90 0.002 26.9 7.5 27 56-82 158-184 (322)
31 PRK07739 flgK flagellar hook-a 49.1 98 0.0021 28.6 8.1 53 56-108 170-222 (507)
32 PF11593 Med3: Mediator comple 48.0 1.3E+02 0.0027 26.7 8.0 78 39-117 10-94 (379)
33 PF00804 Syntaxin: Syntaxin; 47.6 51 0.0011 22.5 4.8 91 24-114 4-102 (103)
34 PF14523 Syntaxin_2: Syntaxin- 47.4 44 0.00096 23.2 4.5 20 98-117 81-100 (102)
35 PHA03395 p10 fibrous body prot 44.6 1E+02 0.0023 21.3 7.1 50 21-70 5-55 (87)
36 KOG2150 CCR4-NOT transcription 43.9 2.8E+02 0.0061 26.1 11.4 93 20-119 5-98 (575)
37 PRK06665 flgK flagellar hook-a 43.6 1.1E+02 0.0024 29.2 7.7 54 55-108 169-222 (627)
38 PRK07191 flgK flagellar hook-a 41.7 1.2E+02 0.0026 27.6 7.4 53 56-108 158-210 (456)
39 PRK07521 flgK flagellar hook-a 41.6 1.1E+02 0.0025 28.0 7.3 55 55-109 152-206 (483)
40 PRK00295 hypothetical protein; 41.3 95 0.0021 20.3 5.0 16 180-195 30-45 (68)
41 PF08653 DASH_Dam1: DASH compl 40.9 38 0.00082 21.6 2.8 30 21-50 6-35 (58)
42 PRK13848 conjugal transfer pro 39.7 1.3E+02 0.0029 21.1 6.1 62 50-115 3-64 (98)
43 PF05597 Phasin: Poly(hydroxya 39.5 98 0.0021 23.2 5.4 29 39-67 96-126 (132)
44 PF07820 TraC: TraC-like prote 39.4 1.3E+02 0.0029 21.0 5.9 61 53-117 5-65 (92)
45 PRK05683 flgK flagellar hook-a 39.0 1.4E+02 0.003 28.8 7.6 55 55-109 157-211 (676)
46 PF10498 IFT57: Intra-flagella 38.0 1.5E+02 0.0031 26.3 7.0 73 51-125 214-289 (359)
47 PRK08147 flgK flagellar hook-a 36.8 2E+02 0.0044 26.8 8.2 28 55-82 158-185 (547)
48 PRK00736 hypothetical protein; 36.6 1.2E+02 0.0026 19.9 4.9 15 181-195 31-45 (68)
49 COG4847 Uncharacterized protei 36.4 1.5E+02 0.0033 20.9 7.5 45 35-79 58-102 (103)
50 PF05227 CHASE3: CHASE3 domain 36.3 1.6E+02 0.0035 21.1 9.2 23 98-120 111-133 (138)
51 PF05713 MobC: Bacterial mobil 35.5 1E+02 0.0022 18.4 4.9 19 27-45 3-21 (48)
52 PHA03332 membrane glycoprotein 35.0 3.7E+02 0.008 27.5 9.6 60 23-82 894-962 (1328)
53 PRK02793 phi X174 lysis protei 35.0 1.3E+02 0.0029 19.8 5.0 26 171-196 17-42 (72)
54 PF05739 SNARE: SNARE domain; 34.6 1.2E+02 0.0025 18.9 5.2 53 27-79 4-57 (63)
55 PRK08471 flgK flagellar hook-a 34.2 1.7E+02 0.0037 27.9 7.3 55 55-109 162-218 (613)
56 PRK11020 hypothetical protein; 34.2 1.9E+02 0.004 21.2 8.3 45 25-69 3-50 (118)
57 PF04642 DUF601: Protein of un 34.0 82 0.0018 26.4 4.5 14 1-14 133-146 (311)
58 PF06810 Phage_GP20: Phage min 33.0 2.3E+02 0.0049 21.8 8.5 61 21-81 21-82 (155)
59 PF09141 Talin_middle: Talin, 32.9 88 0.0019 24.3 4.3 24 59-82 83-106 (161)
60 cd00179 SynN Syntaxin N-termin 31.6 2.1E+02 0.0047 21.1 8.3 25 98-122 98-122 (151)
61 PF08700 Vps51: Vps51/Vps67; 31.4 1.6E+02 0.0035 19.6 5.9 42 176-217 44-85 (87)
62 PF00957 Synaptobrevin: Synapt 31.4 1E+02 0.0022 20.9 4.1 30 168-197 16-45 (89)
63 PF07730 HisKA_3: Histidine ki 31.3 1.4E+02 0.0029 18.7 7.5 32 50-81 33-64 (68)
64 PRK04325 hypothetical protein; 31.3 1.6E+02 0.0035 19.6 5.0 22 172-193 19-40 (74)
65 KOG0570 Transcriptional coacti 29.2 1E+02 0.0022 24.9 4.2 32 175-208 93-124 (223)
66 PF01519 DUF16: Protein of unk 28.9 1.8E+02 0.004 20.8 5.0 38 180-217 50-87 (102)
67 PF10234 Cluap1: Clusterin-ass 28.8 3.6E+02 0.0078 22.8 10.5 38 45-82 153-190 (267)
68 PF14966 DNA_repr_REX1B: DNA r 28.1 2.2E+02 0.0047 20.0 5.9 42 18-62 38-79 (97)
69 PRK06799 flgK flagellar hook-a 28.0 3E+02 0.0065 24.9 7.6 25 57-81 164-188 (431)
70 PF04728 LPP: Lipoprotein leuc 27.3 1.6E+02 0.0035 18.6 4.0 24 22-45 5-28 (56)
71 PF08289 Flu_M1_C: Influenza M 27.3 2.1E+02 0.0046 19.6 6.2 46 64-116 43-88 (95)
72 PRK06945 flgK flagellar hook-a 27.2 3.4E+02 0.0074 26.1 8.1 55 55-109 158-213 (651)
73 PF02346 Vac_Fusion: Chordopox 27.0 1.2E+02 0.0026 19.3 3.4 34 185-218 3-36 (57)
74 PF04065 Not3: Not1 N-terminal 26.9 3.7E+02 0.0079 22.3 11.4 91 21-118 6-97 (233)
75 KOG0972 Huntingtin interacting 26.4 4.3E+02 0.0092 22.9 9.6 19 99-117 270-288 (384)
76 PRK04406 hypothetical protein; 26.0 2.1E+02 0.0045 19.1 5.0 23 172-194 21-43 (75)
77 PF06103 DUF948: Bacterial pro 26.0 2.2E+02 0.0047 19.3 6.9 52 29-82 21-72 (90)
78 PF07011 DUF1313: Protein of u 25.5 1E+02 0.0022 21.3 3.1 21 185-205 51-71 (87)
79 PF03581 Herpes_UL33: Herpesvi 24.9 1.2E+02 0.0025 20.5 3.3 26 176-201 50-75 (75)
80 PF10046 BLOC1_2: Biogenesis o 24.9 2.5E+02 0.0054 19.7 5.5 23 20-42 7-29 (99)
81 PRK02119 hypothetical protein; 24.7 2.2E+02 0.0047 18.9 5.0 26 171-196 18-43 (73)
82 KOG4603 TBP-1 interacting prot 24.6 3.6E+02 0.0077 21.4 11.5 46 35-84 101-146 (201)
83 KOG4326 Mitochondrial F1F0-ATP 24.5 2.2E+02 0.0048 19.0 4.9 18 173-190 29-46 (81)
84 PF02524 KID: KID repeat; Int 23.8 25 0.00055 14.5 -0.0 8 213-220 2-9 (11)
85 PF12729 4HB_MCP_1: Four helix 23.3 3E+02 0.0066 20.1 11.3 84 28-123 50-133 (181)
86 KOG3251 Golgi SNAP receptor co 23.2 4.2E+02 0.0091 21.6 11.3 92 21-123 4-97 (213)
87 KOG3046 Transcription factor, 23.0 1.6E+02 0.0034 22.4 4.0 27 182-208 11-37 (147)
88 PF04949 Transcrip_act: Transc 22.4 3.7E+02 0.0079 20.7 11.2 61 54-117 88-148 (159)
89 PF07432 Hc1: Histone H1-like 22.2 3.3E+02 0.0071 20.0 7.3 51 60-116 3-53 (123)
90 PF09177 Syntaxin-6_N: Syntaxi 21.8 2.1E+02 0.0046 19.8 4.4 57 64-120 8-64 (97)
91 smart00503 SynN Syntaxin N-ter 21.8 2.9E+02 0.0062 19.3 8.0 102 24-125 5-112 (117)
92 KOG3065 SNAP-25 (synaptosome-a 21.7 3.2E+02 0.007 23.2 6.1 60 21-80 212-272 (273)
93 PF07851 TMPIT: TMPIT-like pro 21.6 5.5E+02 0.012 22.5 9.8 86 26-115 3-88 (330)
94 PF00435 Spectrin: Spectrin re 21.1 2.5E+02 0.0055 18.4 8.5 6 55-60 78-83 (105)
No 1
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-33 Score=229.71 Aligned_cols=214 Identities=32% Similarity=0.410 Sum_probs=166.4
Q ss_pred CCchhhhcCCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 1 MSFQDLQNGSRSSPSS-SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKS 79 (220)
Q Consensus 1 msf~dle~~~~~~~~~-~f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~ 79 (220)
||+++.+.|+....++ +|..++.+|+..|+.|+..+..|.+.+..+||+.|++++|+++|.....++.+++++...|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke 80 (269)
T KOG0811|consen 1 DSEAEAEGGGSTQEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKE 80 (269)
T ss_pred CcccccCCCCCCcCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666643333 399999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 027690 80 VSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQ 159 (220)
Q Consensus 80 l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~l~~~~ 159 (220)
+..... ....+..|++.++|.++|..++++|+.+|+...++++ .+.++.+...+....+ .+....+........
T Consensus 81 ~~~~~~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~s~~~~~---~~~~~~~~~~~~~~~ 154 (269)
T KOG0811|consen 81 IDTLRL-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQNSQQLDE---ESPRVDELSNNGSQS 154 (269)
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccccccccchhhhh---hhhhhhhhhccchhh
Confidence 999876 3455889999999999999999999999999999998 3322222111111000 000000000011111
Q ss_pred HHH-HHH-HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 160 KRQ-ELF-LLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 160 ~~q-q~~-~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
+++ +.. ...++.+|++.++++|+.+|.+||++|.|||+||+|||.||++||++||+||+|+
T Consensus 155 ~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nv 217 (269)
T KOG0811|consen 155 QQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANV 217 (269)
T ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 111 222 2333478899999999999999999999999999999999999999999999984
No 2
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9e-27 Score=196.00 Aligned_cols=193 Identities=17% Similarity=0.269 Sum_probs=153.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~ 89 (220)
|+..|+.|.+.|.++...+.+|.+++.. |.++.....++.+++.+...+....+.++..|+.+.... +..++
T Consensus 38 Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~ 117 (297)
T KOG0810|consen 38 FFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAG 117 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcc
Confidence 9999999999999999999999999865 677888889999999999999999999999999998731 12456
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CC-CCCCCCCC--CCCCCCCCCCchhHHHHHHHHHH
Q 027690 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPP--SS-APPSTTDT--SGSGDFMGSENQPFLMEQKRQEL 164 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~--~~-~~~~~~~e--~~~~~~~~~e~~~l~~~~~~qq~ 164 (220)
.+.++++...+++.|.++|..|+.++..|+++++..+.+... +. .+++++.+ .+.|+...|.+..+. . +++.
T Consensus 118 ~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~-~~~~ 194 (297)
T KOG0810|consen 118 LRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--D-RGQA 194 (297)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--H-hhhh
Confidence 789999999999999999999999999999999976665421 11 12222221 123443344332222 1 1111
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
-.-+..|++||.+|++||++|.||++||.|||+||..||+|||+||+|.
T Consensus 195 -------~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV 243 (297)
T KOG0810|consen 195 -------KQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNV 243 (297)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1225799999999999999999999999999999999999999999983
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-24 Score=176.94 Aligned_cols=192 Identities=21% Similarity=0.261 Sum_probs=148.1
Q ss_pred CC-CCchHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--hh
Q 027690 16 SS-SKSPSQAVAAGIFQINTAVAAFRRLVDA--IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTD--VN 90 (220)
Q Consensus 16 ~~-f~~~~~~i~~~i~~i~~~i~~l~~l~~~--l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~--~~ 90 (220)
+| |...+++|...|..+..++.+|.+.+.. ..++.|..+-+..|+.++..|+.++++|...|+.+....+.++ ..
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~ 135 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER 135 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 45 9999999999999999999999999764 5788888888999999999999999999999999988654222 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 027690 91 QNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPP---SSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLL 167 (220)
Q Consensus 91 ~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~~~~~~~e~~~l~~~~~~qq~~~~ 167 (220)
...++.+..+..+++.+..+|+..|..|.++.+..-..... ...+.-+ .+.+..+.+..+. .+++..
T Consensus 136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~-----~~dd~d~~~~~~q----e~ql~~- 205 (305)
T KOG0809|consen 136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVD-----LPDDEDFSDRTFQ----EQQLML- 205 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhcccccc-----CcchhhhhhhhHH----HHHHHH-
Confidence 45778889999999999999999999999999865332210 0001110 0001111111221 122221
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 168 DNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 168 ~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
++.++..++||++||.+|.+||.|||+||+||+.||.+||++|||||||+
T Consensus 206 ---~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNv 255 (305)
T KOG0809|consen 206 ---FENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNV 255 (305)
T ss_pred ---HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecch
Confidence 23356899999999999999999999999999999999999999999995
No 4
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.87 E-value=9.7e-21 Score=154.56 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=133.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHH
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA--IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKV 95 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~--l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~ 95 (220)
|......|...+..+..++..+.+-... +..+.|..+-.+.|..+...++..+.+|...++..-... ....
T Consensus 36 ~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~-------~s~~ 108 (283)
T COG5325 36 FILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNL-------QSSF 108 (283)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 7899999999999999999999998653 567788777777889999999999888888887754321 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC----CCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 027690 96 EDAKLARDFQTVLQEFQKIQQLASEREST---YSPSV----PPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLD 168 (220)
Q Consensus 96 q~~~L~~~f~~~l~~f~~~q~~~~~~~k~---~~~~~----~~~~~~~~~~~e~~~~~~~~~e~~~l~~~~~~qq~~~~~ 168 (220)
.+++|...|...+..++..|+....-.+. |.+.. ....+-.+.+.+.... ...++ +..|+...+.
T Consensus 109 ~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~--~~~sq------~~lqq~~l~~ 180 (283)
T COG5325 109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLS--SLGSQ------QTLQQQGLSN 180 (283)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhh--ccchh------hHHHHhhhhh
Confidence 35788888888888888887775544332 11111 0000101100000000 00111 1223334567
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 169 NEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 169 ~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
++.+|+..++.+|.++|.+|+++|.|||+||+||+++|.+||++||+||+|+
T Consensus 181 ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni 232 (283)
T COG5325 181 EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNI 232 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence 8899999999999999999999999999999999999999999999999995
No 5
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.78 E-value=3.7e-18 Score=136.01 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=145.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhH
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT---LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK 94 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~---~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k 94 (220)
|......|..++..+...+.++..+|+.+-+-.+. ..++..|+.-+.+++.|-..+...++..++..-+ ...++
T Consensus 23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ih---l~~k~ 99 (280)
T COG5074 23 FMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIH---LANKQ 99 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccc---hhhHH
Confidence 88899999999999999999999999987655443 3688999999999999999999999999874322 24466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCC---CCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 027690 95 VEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP--STTDT---SGSGDFMGSENQPFLMEQKRQELFLLDN 169 (220)
Q Consensus 95 ~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~--~~~~e---~~~~~~~~~e~~~l~~~~~~qq~~~~~~ 169 (220)
.|-+...++|.++++.|+.++..|++.++....++..-..|. .++.+ .+.+++++|.+ +++...++.+
T Consensus 100 aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsq-alL~anr~ge------ 172 (280)
T COG5074 100 AQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQ-ALLNANRRGE------ 172 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHH-HHHhcCccch------
Confidence 777889999999999999999999998876555442211111 11111 11222344443 4444333332
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 170 e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
...-+..+++||.+|.+||++|.||.++|.||+.||.+|.++||.|+.|.
T Consensus 173 -AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~ 222 (280)
T COG5074 173 -AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNV 222 (280)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhH
Confidence 23346899999999999999999999999999999999999999998763
No 6
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.70 E-value=4.9e-16 Score=112.27 Aligned_cols=101 Identities=35% Similarity=0.585 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHH
Q 027690 25 VAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDF 104 (220)
Q Consensus 25 i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f 104 (220)
|+..|+.|+.+|..|+++++.|||++|++++|++|+.++.+++.+++.+...|+.|..+......++..+.+.++|+++|
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df 80 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF 80 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999998222356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 027690 105 QTVLQEFQKIQQLASERESTY 125 (220)
Q Consensus 105 ~~~l~~f~~~q~~~~~~~k~~ 125 (220)
+.++++|+.+|+.|.++++.+
T Consensus 81 ~~~l~~fq~~q~~~~~~~k~~ 101 (102)
T PF14523_consen 81 KEALQEFQKAQRRYAEKEKQT 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999864
No 7
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.62 E-value=8.7e-15 Score=108.03 Aligned_cols=106 Identities=28% Similarity=0.430 Sum_probs=96.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCchhh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT-LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR-----DTDVNQ 91 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~-~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~-----~~~~~~ 91 (220)
|+..|+.|...|..|+.+|..|.+++..++++.+. +.++.+++.+...|+.+++.|+..|+.|..... ++++.+
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r 85 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDR 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhh
Confidence 99999999999999999999999999998888775 678999999999999999999999999997542 124568
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 92 NKKVEDAKLARDFQTVLQEFQKIQQLASERES 123 (220)
Q Consensus 92 ~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k 123 (220)
.+++++++|+++|+++|.+|+.+|..|++++|
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999875
No 8
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.61 E-value=6.4e-15 Score=113.63 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=102.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CCchh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKD-TLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR------DTDVN 90 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D-~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~------~~~~~ 90 (220)
|+..|+.|...|..|+.+|..|.+++..+++..| .+.++.+|+.+...|+.+++.|+..|+.|..... +++..
T Consensus 4 F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~ 83 (151)
T cd00179 4 FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVD 83 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH
Confidence 9999999999999999999999999999988887 7789999999999999999999999999987532 13356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027690 91 QNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV 129 (220)
Q Consensus 91 ~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~ 129 (220)
+++++++.+|+++|+++|.+|+.+|..|+++++..+.++
T Consensus 84 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq 122 (151)
T cd00179 84 RIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999877665
No 9
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.1e-13 Score=109.40 Aligned_cols=193 Identities=18% Similarity=0.251 Sum_probs=119.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----Cch--hh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRD----TDV--NQ 91 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~----~~~--~~ 91 (220)
|...+..|...|.....++..|..+.+.-.-+.|.+- +|..++.-|++.+..++..|-.|..+... ++. ..
T Consensus 43 F~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~V---eI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~ 119 (311)
T KOG0812|consen 43 FNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPV---EIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQ 119 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch---hhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhh
Confidence 9999999999999999999999999998877888763 58888888888888888888888775321 110 12
Q ss_pred hhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCC-CCCC----CCCCC------CCCCCCCCCCCc
Q 027690 92 NKKVEDA-------KLARDFQTVLQEFQKIQQLASERESTYSPS-VPP-SSAP----PSTTD------TSGSGDFMGSEN 152 (220)
Q Consensus 92 ~~k~q~~-------~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~-~~~-~~~~----~~~~~------e~~~~~~~~~e~ 152 (220)
+-++.+. ..+++|++++.--...-+..+.|....... ++. +.+. ..+.. ..+.++...
T Consensus 120 Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~--- 196 (311)
T KOG0812|consen 120 HSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDV--- 196 (311)
T ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhccccc---
Confidence 2233333 444555555554333333322222111110 000 0000 00000 000000000
Q ss_pred hhHHH----HHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 153 QPFLM----EQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 153 ~~l~~----~~~~qq~~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
.++.+ ..+++++..+++ ...++++|..++..||.+|.||.+||..||+||.+|||++.|||.|.
T Consensus 197 ~~ln~gd~~~~qqqQm~ll~e----s~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv 264 (311)
T KOG0812|consen 197 ESLNMGDSSNPQQQQMALLDE----SDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNV 264 (311)
T ss_pred ccccccCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01110 011233333322 25799999999999999999999999999999999999999999984
No 10
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.07 E-value=1.7e-10 Score=74.74 Aligned_cols=41 Identities=34% Similarity=0.661 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 179 ~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
++|++++..|+.+|.+|+.||.||+.+|.+||++||+||+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~ 42 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDN 42 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987
No 11
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.05 E-value=3e-09 Score=76.24 Aligned_cols=91 Identities=20% Similarity=0.313 Sum_probs=78.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAI-GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l-~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~ 89 (220)
|+..+++|...|..|...|..|.++++.+ .++.+...++.+|+.++.+|+.+++.|...|+.|.... .++..
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~ 84 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNE 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHH
Confidence 89999999999999999999999999864 44443357899999999999999999999999999861 12345
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 027690 90 NQNKKVEDAKLARDFQTVL 108 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l 108 (220)
.+.+++++..|+++|+++|
T Consensus 85 ~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 85 VRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 6899999999999999986
No 12
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.01 E-value=4.9e-10 Score=73.63 Aligned_cols=40 Identities=28% Similarity=0.562 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+||.|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~ 40 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDN 40 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHH
Confidence 6899999999999999999999999999999999999986
No 13
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.96 E-value=1.7e-09 Score=71.25 Aligned_cols=45 Identities=29% Similarity=0.597 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
...+++|+.+|..|+.+|.++++||.+|+.+|.+||++||+|++|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~ 48 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDN 48 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999987
No 14
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=3.3 Score=34.25 Aligned_cols=172 Identities=11% Similarity=0.108 Sum_probs=95.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----Cchhhhh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRD----TDVNQNK 93 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~----~~~~~~~ 93 (220)
|+....++.....+++..+.+...+.+.+++ +.+..-..|. ..|..+...+...+--+...+.. ......+
T Consensus 8 ~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~--~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R 82 (235)
T KOG3202|consen 8 FFRVKNETLKLSEEIQGLYQRRSELLKDTGS--DAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGIDEFELSRR 82 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHH
Confidence 8889999999999998888888887766322 2222211121 12222223333333333322211 1233556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-C---CCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 027690 94 KVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTT-D---TSGSGDFMGSENQPFLMEQKRQELFLLDN 169 (220)
Q Consensus 94 k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~~~~-~---e~~~~~~~~~e~~~l~~~~~~qq~~~~~~ 169 (220)
+.....+..+....-..|.. ..+... ..+......+.... . ....|.+. . +.
T Consensus 83 ~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~~l~~~~~~~~~~~~~~~~~~~D~-------v-----------~~ 138 (235)
T KOG3202|consen 83 RRFIDNLRTQLRQMKSKMAM--SGFANS----NIRDILLGPEKSPNLDEAMSRASGLDN-------V-----------QE 138 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hccccc----cchhhhcCCCCCCchhhhHHHhhccCc-------H-----------HH
Confidence 66677777777766666655 011000 00000001111110 0 00001000 0 11
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 170 e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
...++..++++-+..+..|+.+|.-+.++=.-++.=+.+||.++|.-++
T Consensus 139 ~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~ 187 (235)
T KOG3202|consen 139 IVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDN 187 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1234557889999999999999999999999999999999999997653
No 15
>PF15605 Toxin_52: Putative toxin 52
Probab=90.87 E-value=4.2 Score=28.94 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=46.1
Q ss_pred hhhcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 5 DLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAK 76 (220)
Q Consensus 5 dle~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~ 76 (220)
||...+++-++++.++.+.++.+....+......|++. |+.|.=+...++-+..--.+++..+..+...
T Consensus 32 dl~G~pVpKp~GgywdHlqEm~da~~GL~n~~~~le~~---L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~ 100 (103)
T PF15605_consen 32 DLQGNPVPKPDGGYWDHLQEMQDAYRGLVNRKRTLEGS---LKNPNLSGRTRELLQSKLNEANNYLDKIEDF 100 (103)
T ss_pred HHcCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666675556568899999999988888877777765 6666544455555555545555555555443
No 16
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.28 E-value=15 Score=31.57 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=41.1
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 167 LDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 167 ~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
.++|...-.....+--.++++||+.|.|+..|=.-++.=|-+|..-||.|=.
T Consensus 216 ~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d 267 (316)
T KOG3894|consen 216 LETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHD 267 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333334556667899999999999999999999999999999998854
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.04 E-value=49 Score=25.59 Aligned_cols=61 Identities=8% Similarity=0.239 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
+......+...+..+...+..|..-.+.|.+..-+.+++..|..+..++ ..+...|..|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~----~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEI----EELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 4445666666666666666666666666665555677888888887665 555566666665
No 18
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=69.98 E-value=20 Score=25.10 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
|+...+++...|..+...+.....+...-. ....+..+..++...+..+...|..|..
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~-------~~~e~~~~~~eL~~~l~~ie~~L~DL~~ 60 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTS-------SSEELKWLKRELRNALQSIEWDLEDLEE 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------CcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777787777777666655555433222 2233444445555555555555555554
No 19
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=68.19 E-value=14 Score=22.37 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 027690 187 EIEEQIGQANEIFKDLAVLVHEQG 210 (220)
Q Consensus 187 ~Ie~~I~eln~IF~dLa~lV~eQG 210 (220)
.|-..+.+++.++++|-.++.+|=
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~ 28 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999988873
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=67.76 E-value=48 Score=24.68 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
....+.=.+++..+-.++..++.-+..+..+|..=+.-|++||+|
T Consensus 81 ~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 81 KEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555556666666666666767777777777667778888876
No 21
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.96 E-value=36 Score=24.39 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSV 80 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l 80 (220)
.+..+...+......+..++.-+..++|..|-..++-.|..+.. -++.++..|+.+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G----~~~~l~~~l~~v 91 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRG----ELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh----HHHHHHHHHHHH
Confidence 45566666677788888888888888887776665555544433 334444555444
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.11 E-value=38 Score=24.99 Aligned_cols=31 Identities=10% Similarity=0.326 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 172 AFNEAIIEEREHGLREIEEQIGQANEIFKDL 202 (220)
Q Consensus 172 ~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dL 202 (220)
+.-+.++=|+.+++..+..+|.||.+||+..
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999999984
No 23
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=55.45 E-value=62 Score=21.82 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHH
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTS-KDTLDHRQKLHNTRQRILQLV 70 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~-~D~~~~r~~i~~l~~~i~~l~ 70 (220)
..--|...|..+..++..|+..+..+.+. .+-.++..+++.+...+..+-
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~ 55 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLN 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999888644 444668888877766554443
No 24
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=54.79 E-value=85 Score=23.20 Aligned_cols=52 Identities=4% Similarity=0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHH
Q 027690 22 SQAVAAGIFQINTAVAAFRRLVDAIGTSKD-TLDHRQKLHNTRQRILQLVKDT 73 (220)
Q Consensus 22 ~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D-~~~~r~~i~~l~~~i~~l~~~~ 73 (220)
..+|+..+..+......|.++...+++... ...+..--..++.++...+.+|
T Consensus 5 ~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkC 57 (121)
T PF03310_consen 5 IKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 456676777777777777777777765543 2322222233334444444444
No 25
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=54.71 E-value=77 Score=22.73 Aligned_cols=48 Identities=8% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHHHHHHHH
Q 027690 25 VAAGIFQINTAVAAFRRLVDAIGTSKDTL--DHRQKLHNTRQRILQLVKD 72 (220)
Q Consensus 25 i~~~i~~i~~~i~~l~~l~~~l~t~~D~~--~~r~~i~~l~~~i~~l~~~ 72 (220)
|......++.-+..++.+.+.-|++.+.+ ++|.+++.+..+++.-+..
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~ 59 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGD 59 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666777777777776665432 4555555554444333333
No 26
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=54.03 E-value=81 Score=29.62 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHH
Q 027690 57 QKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQ 109 (220)
Q Consensus 57 ~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~ 109 (220)
.+|...+.+++.|++++...=+.|.........-.-...++++|..++...+.
T Consensus 163 ~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i~ 215 (552)
T COG1256 163 AEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIG 215 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHhhcc
Confidence 34555556666665554444444433211111111233456666666655543
No 27
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.35 E-value=26 Score=29.69 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
+=+..+.+|-..+..|..|=.||++=|..|-+.||+|+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k 254 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDK 254 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHH
Confidence 4566778899999999999999999999999999999875
No 28
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.38 E-value=60 Score=21.23 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 176 AIIEEREHGLREIEEQIGQANEIFKDL 202 (220)
Q Consensus 176 ~~i~eR~~eI~~Ie~~I~eln~IF~dL 202 (220)
..|-+-.++|..++..+.-|.+-.+++
T Consensus 25 ~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 25 DVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555544444
No 29
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.20 E-value=87 Score=21.70 Aligned_cols=60 Identities=8% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 23 QAVAAGIFQINTAVAAFRRLVD-AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 23 ~~i~~~i~~i~~~i~~l~~l~~-~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
..+...+..|...|..|++.+. .+....+...+..+|+.+..+-.+|..++-....+...
T Consensus 4 ~~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~ 64 (89)
T PF13747_consen 4 YSLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANR 64 (89)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 4577788889999999999876 46666555667777777766666666555555544433
No 30
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=49.11 E-value=90 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 56 RQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 56 r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
..+|.....+++.+..++...=++|..
T Consensus 158 ~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 158 NAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666555544444443
No 31
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=49.07 E-value=98 Score=28.61 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHH
Q 027690 56 RQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVL 108 (220)
Q Consensus 56 r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l 108 (220)
..+|.....+++.+.+++...=++|...............+++.|..++...+
T Consensus 170 ~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~~v 222 (507)
T PRK07739 170 KSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIV 222 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhhc
Confidence 45566666677777666555555554422111111223345555555554443
No 32
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.99 E-value=1.3e+02 Score=26.74 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHH-----HHHHHHHHHHHHHH
Q 027690 39 FRRLVDAIGTSKDT--LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVED-----AKLARDFQTVLQEF 111 (220)
Q Consensus 39 l~~l~~~l~t~~D~--~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~-----~~L~~~f~~~l~~f 111 (220)
|+.|...|.. .|. ..+.++|......|--+--..++-|+-+..+..-...++..|+.+ -.|..+|+.+...|
T Consensus 10 LeeLe~kLa~-~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie~~~~~s~qeKFl~IR~KlleL~~~lQ~lS~df 88 (379)
T PF11593_consen 10 LEELEEKLAS-NDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANIEEMNNKSPQEKFLLIRSKLLELYNKLQELSSDF 88 (379)
T ss_pred HHHHHHHHhc-CCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444542 222 234555555555544443334444444444332223344444432 34788888888888
Q ss_pred HHHHHH
Q 027690 112 QKIQQL 117 (220)
Q Consensus 112 ~~~q~~ 117 (220)
+++|=.
T Consensus 89 ~~LqPL 94 (379)
T PF11593_consen 89 QKLQPL 94 (379)
T ss_pred HHhchH
Confidence 887654
No 33
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.64 E-value=51 Score=22.49 Aligned_cols=91 Identities=7% Similarity=0.143 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCC-Cch------hhhhHH
Q 027690 24 AVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQK-LHNTRQRILQLVKDTSAKLKSVSESDRD-TDV------NQNKKV 95 (220)
Q Consensus 24 ~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~-i~~l~~~i~~l~~~~~~~lk~l~~~~~~-~~~------~~~~k~ 95 (220)
..-..+..|...|..|...+..|...+...-.... =.....++..+..+++.....+...... ... ......
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~ 83 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSN 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcH
Confidence 34456677888888888887777654432110000 0345666666666666666666542210 000 011122
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027690 96 EDAKLARDFQTVLQEFQKI 114 (220)
Q Consensus 96 q~~~L~~~f~~~l~~f~~~ 114 (220)
...-..+.+..+..+|+.+
T Consensus 84 ~~ri~~nq~~~L~~kf~~~ 102 (103)
T PF00804_consen 84 EVRIRKNQVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666654
No 34
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=47.37 E-value=44 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027690 98 AKLARDFQTVLQEFQKIQQL 117 (220)
Q Consensus 98 ~~L~~~f~~~l~~f~~~q~~ 117 (220)
..+...|+.+...|...++.
T Consensus 81 ~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 81 KEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 45556666666666555543
No 35
>PHA03395 p10 fibrous body protein; Provisional
Probab=44.63 E-value=1e+02 Score=21.32 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHH
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTS-KDTLDHRQKLHNTRQRILQLV 70 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~-~D~~~~r~~i~~l~~~i~~l~ 70 (220)
..--|...|..+..+|..|+..+..+.+. .|-.++..+++......+.+-
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~ 55 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTIS 55 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHH
Confidence 44568888999999999999998887543 466778888888866664443
No 36
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=43.94 E-value=2.8e+02 Score=26.09 Aligned_cols=93 Identities=13% Similarity=0.261 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHH
Q 027690 20 SPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH-NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDA 98 (220)
Q Consensus 20 ~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~-~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~ 98 (220)
.+..+|...+.+|...|.-+......+.... +..-+++++ +|..+|+.| ..++++||.-.+... -+ -|-.+-
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~sqkeK~e~DLKkEIKKL-QRlRdQIKtW~ss~d----IK-DK~~L~ 77 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NVSQKEKLESDLKKEIKKL-QRLRDQIKTWQSSSD----IK-DKDSLL 77 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccc----cc-cHHHHH
Confidence 3678899999999999999999888775443 344466664 344444333 345566665544211 11 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027690 99 KLARDFQTVLQEFQKIQQLAS 119 (220)
Q Consensus 99 ~L~~~f~~~l~~f~~~q~~~~ 119 (220)
.-++-+...|.+|..+.+..+
T Consensus 78 d~RrlIE~~MErfK~vEke~K 98 (575)
T KOG2150|consen 78 DNRRLIEQRMERFKAVEKEMK 98 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334556677888887776643
No 37
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=43.64 E-value=1.1e+02 Score=29.17 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHH
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVL 108 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l 108 (220)
...+|.....+++.+.+++...=++|...............+++.|..++...+
T Consensus 169 ~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~~v 222 (627)
T PRK06665 169 ANDEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSSLI 222 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhc
Confidence 345566666666766666555555554432111111234445555555555444
No 38
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=41.75 E-value=1.2e+02 Score=27.57 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHH
Q 027690 56 RQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVL 108 (220)
Q Consensus 56 r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l 108 (220)
..+|.....+++.+.+++...=++|...............+++.|.+++...+
T Consensus 158 ~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS~~v 210 (456)
T PRK07191 158 GQQRDATVKQINSLTRSIADYNQKILKNRSDGNNISDLLDQRDLQIKKLSGLI 210 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhc
Confidence 34455566666666655555544444322111111223344555555555444
No 39
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=41.56 E-value=1.1e+02 Score=27.96 Aligned_cols=55 Identities=7% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHH
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQ 109 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~ 109 (220)
...+|.....+++.+.++|...=++|...............+++.|..++.+.+.
T Consensus 152 ~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~~LS~~v~ 206 (483)
T PRK07521 152 ADAEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIVG 206 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHhhcC
Confidence 3456666666777776666555555544321111112344455666665555443
No 40
>PRK00295 hypothetical protein; Provisional
Probab=41.27 E-value=95 Score=20.31 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027690 180 EREHGLREIEEQIGQA 195 (220)
Q Consensus 180 eR~~eI~~Ie~~I~el 195 (220)
+-.++|..++..+..|
T Consensus 30 ~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 30 EQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 41
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=40.89 E-value=38 Score=21.64 Aligned_cols=30 Identities=0% Similarity=0.160 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSK 50 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~ 50 (220)
...++++.+..+..++..|..++..|..++
T Consensus 6 ~f~eL~D~~~~L~~n~~~L~~ihesL~~FN 35 (58)
T PF08653_consen 6 QFAELSDSMETLDKNMEQLNQIHESLSDFN 35 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999988876654
No 42
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=39.69 E-value=1.3e+02 Score=21.09 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027690 50 KDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQ 115 (220)
Q Consensus 50 ~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q 115 (220)
+.+..++.+|..|..+.+.+...-...|-++-.-.. ...--+--..|...|.++-.+|+.-+
T Consensus 3 k~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAG----LgeieI~d~eL~~aFeeiAaRFR~g~ 64 (98)
T PRK13848 3 KPSSKIREEIAKLQEQLKQAETREAERIGRIALKAG----LGEIEIEEAELQAAFEELAKRFRGGK 64 (98)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ccccccCHHHHHHHHHHHHHHHhcCC
Confidence 345678889999998888888888888877754211 11111112468888888888887643
No 43
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=39.53 E-value=98 Score=23.22 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=14.2
Q ss_pred HHHHHHHhCCC--CCcHHHHHHHHHHHHHHH
Q 027690 39 FRRLVDAIGTS--KDTLDHRQKLHNTRQRIL 67 (220)
Q Consensus 39 l~~l~~~l~t~--~D~~~~r~~i~~l~~~i~ 67 (220)
+.+..+.||-| +|-..|..+|+.|...+.
T Consensus 96 V~~aL~rLgvPs~~dv~~L~~rId~L~~~v~ 126 (132)
T PF05597_consen 96 VARALNRLGVPSRKDVEALSARIDQLTAQVE 126 (132)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44445556544 333455555555544443
No 44
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=39.37 E-value=1.3e+02 Score=21.03 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 53 LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQL 117 (220)
Q Consensus 53 ~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~ 117 (220)
..++.+|..|..+.+.+...-..+|-++-.-.. ...--+--.-|..-|.++..+|+.-...
T Consensus 5 s~I~~eIekLqe~lk~~e~keaERigr~AlKaG----L~eieI~d~eL~~~FeeIa~RFrk~~~~ 65 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAERIGRIALKAG----LGEIEISDAELQAAFEEIAARFRKGKKK 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cccccCCHHHHHHHHHHHHHHHhccccc
Confidence 467888888888888888887777777754211 1111112246788888888888765443
No 45
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.01 E-value=1.4e+02 Score=28.84 Aligned_cols=55 Identities=7% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHH
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQ 109 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~ 109 (220)
...+|.....+|+.+.++|...=++|...............+++.|..++...+.
T Consensus 157 vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v~ 211 (676)
T PRK05683 157 INSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNELVG 211 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhcC
Confidence 4456666667777776665555555543221111112344556666666655543
No 46
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=38.01 E-value=1.5e+02 Score=26.30 Aligned_cols=73 Identities=18% Similarity=0.353 Sum_probs=40.0
Q ss_pred CcHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027690 51 DTLDHRQKL---HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTY 125 (220)
Q Consensus 51 D~~~~r~~i---~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~ 125 (220)
|..+.|..+ +.+...|...+..++..|+.|...... ..+++.+ .-.-|.++|...+..|+..+..+.+-...|
T Consensus 214 d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~-~lekI~s-REk~iN~qle~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 214 DAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK-TLEKIES-REKYINNQLEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444 455567777777777777777653210 0111110 113466677777777777777665544443
No 47
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.78 E-value=2e+02 Score=26.77 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
...+|.....+|+.+.+++...=+.|..
T Consensus 158 ~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 158 VNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677776665555555543
No 48
>PRK00736 hypothetical protein; Provisional
Probab=36.61 E-value=1.2e+02 Score=19.86 Aligned_cols=15 Identities=0% Similarity=0.173 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027690 181 REHGLREIEEQIGQA 195 (220)
Q Consensus 181 R~~eI~~Ie~~I~el 195 (220)
-.++|..+...+.-|
T Consensus 31 Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 31 QWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 49
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.37 E-value=1.5e+02 Score=20.88 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 35 AVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKS 79 (220)
Q Consensus 35 ~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~ 79 (220)
-...+.-+.+.++-+.++++..+.+.+....+-.+...+++.|.+
T Consensus 58 ll~~~ivllkel~~~Aeseeake~irq~rq~~EklAg~lTkki~e 102 (103)
T COG4847 58 LLLYLIVLLKELAVIAESEEAKESIRQVRQEVEKLAGDLTKKIEE 102 (103)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666777777777877777777777777777777666643
No 50
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=36.33 E-value=1.6e+02 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027690 98 AKLARDFQTVLQEFQKIQQLASE 120 (220)
Q Consensus 98 ~~L~~~f~~~l~~f~~~q~~~~~ 120 (220)
..+...|...+..|...+.....
T Consensus 111 ~~~~~~i~~~~~~~~~~e~~~l~ 133 (138)
T PF05227_consen 111 KQLMDQIRQLLEQIQAEEQRLLK 133 (138)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888777766544
No 51
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=35.53 E-value=1e+02 Score=18.44 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027690 27 AGIFQINTAVAAFRRLVDA 45 (220)
Q Consensus 27 ~~i~~i~~~i~~l~~l~~~ 45 (220)
..|..|..++.+|.+..+.
T Consensus 3 reL~~ignNlNQiAk~~N~ 21 (48)
T PF05713_consen 3 RELNRIGNNLNQIAKHANS 21 (48)
T ss_pred HHHHHHhccHHHHHHHHhC
Confidence 3466677788888887776
No 52
>PHA03332 membrane glycoprotein; Provisional
Probab=35.01 E-value=3.7e+02 Score=27.53 Aligned_cols=60 Identities=8% Similarity=0.161 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--H-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDT--L-------DHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 23 ~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~--~-------~~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
.++++.|...+..|..+..-+..+|..-+. . +...+|.+|..+++..+-.+...++.|-.
T Consensus 894 a~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ 962 (1328)
T PHA03332 894 AEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLAT 962 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777766666543221 1 23345667777777777777777777665
No 53
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.99 E-value=1.3e+02 Score=19.84 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=11.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 171 IAFNEAIIEEREHGLREIEEQIGQAN 196 (220)
Q Consensus 171 ~~~~~~~i~eR~~eI~~Ie~~I~eln 196 (220)
+.|+...|.+=.+.|.+-.+.|..|.
T Consensus 17 lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 17 LAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 54
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=34.64 E-value=1.2e+02 Score=18.90 Aligned_cols=53 Identities=13% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 27 AGIFQINTAVAAFRRLVDAIGTSKDT-LDHRQKLHNTRQRILQLVKDTSAKLKS 79 (220)
Q Consensus 27 ~~i~~i~~~i~~l~~l~~~l~t~~D~-~~~r~~i~~l~~~i~~l~~~~~~~lk~ 79 (220)
..|..|...|..|+.+...+++--+. ..+=+.|+.-...+...++.....|+.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777766665533222 223344444444444444444444433
No 55
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.24 E-value=1.7e+02 Score=27.88 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--hhhhhHHHHHHHHHHHHHHHH
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTD--VNQNKKVEDAKLARDFQTVLQ 109 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~--~~~~~k~q~~~L~~~f~~~l~ 109 (220)
+..+|.....+|+.+.++|...=++|........ .......+++.|..++...+.
T Consensus 162 ~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~g~~~~~ndL~DqRD~ll~eLS~~v~ 218 (613)
T PRK08471 162 VNEELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSKLVG 218 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHhhcC
Confidence 3456666666777776666555555544321111 112344555666666655544
No 56
>PRK11020 hypothetical protein; Provisional
Probab=34.23 E-value=1.9e+02 Score=21.18 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHHHHHH
Q 027690 25 VAAGIFQINTAVAAFRRLVDAIGTSKDTL---DHRQKLHNTRQRILQL 69 (220)
Q Consensus 25 i~~~i~~i~~~i~~l~~l~~~l~t~~D~~---~~r~~i~~l~~~i~~l 69 (220)
+...|..++..+..+++.........|.+ .+.+.++.++.+|..+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776655544444443 3444555555554443
No 57
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=33.97 E-value=82 Score=26.39 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=9.4
Q ss_pred CCchhhhcCCCCCC
Q 027690 1 MSFQDLQNGSRSSP 14 (220)
Q Consensus 1 msf~dle~~~~~~~ 14 (220)
|+|+|+-..-+.++
T Consensus 133 ~~FAD~mRtlv~pg 146 (311)
T PF04642_consen 133 MPFADTMRTLVHPG 146 (311)
T ss_pred ccHHHHHHhhcCCC
Confidence 78888776655444
No 58
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.01 E-value=2.3e+02 Score=21.78 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIG-TSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~-t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~ 81 (220)
.++.+...+..+...|....+-+..|. +..|.++++.+|..+..+....-......+..+.
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666663 3557788888888888777766556666665554
No 59
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=32.88 E-value=88 Score=24.34 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 59 LHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 59 i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
+.....-|...+.++.+.++-|..
T Consensus 83 vgaAittIssnl~em~k~vr~laa 106 (161)
T PF09141_consen 83 VGAAITTISSNLPEMAKGVRMLAA 106 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333334444444444444444444
No 60
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=31.59 E-value=2.1e+02 Score=21.10 Aligned_cols=25 Identities=8% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 98 AKLARDFQTVLQEFQKIQQLASERE 122 (220)
Q Consensus 98 ~~L~~~f~~~l~~f~~~q~~~~~~~ 122 (220)
..+...|+.+-..|....+....|.
T Consensus 98 ~~~m~~fq~~Q~~~~~~~k~~i~Rq 122 (151)
T cd00179 98 VEVMTEFNKAQRKYRERYKERIQRQ 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665554444443
No 61
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=31.37 E-value=1.6e+02 Score=19.58 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 027690 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMT 217 (220)
Q Consensus 176 ~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE 217 (220)
..|=.++++...+...|..|..-+..|..+|.+.+..+.++-
T Consensus 44 ~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 44 KLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567778888888888888888888888888888888777663
No 62
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=31.36 E-value=1e+02 Score=20.93 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=23.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 168 DNEIAFNEAIIEEREHGLREIEEQIGQANE 197 (220)
Q Consensus 168 ~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~ 197 (220)
...+..+...+-+|.+-+..|+.--.+|..
T Consensus 16 ~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~ 45 (89)
T PF00957_consen 16 KNIMRENIDKLLERGEKLEELEDKTEELSD 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 344556678888999999999988777764
No 63
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=31.31 E-value=1.4e+02 Score=18.71 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690 50 KDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81 (220)
Q Consensus 50 ~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~ 81 (220)
.+.+..+..+..+...+...+.+++..+..|.
T Consensus 33 ~~~~~~~~~l~~i~~~~~~~~~~~R~~~~~Lr 64 (68)
T PF07730_consen 33 DDPEEAREELEEIRELLREALQELRRIIHELR 64 (68)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777888887777777777777777664
No 64
>PRK04325 hypothetical protein; Provisional
Probab=31.29 E-value=1.6e+02 Score=19.57 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 027690 172 AFNEAIIEEREHGLREIEEQIG 193 (220)
Q Consensus 172 ~~~~~~i~eR~~eI~~Ie~~I~ 193 (220)
.|+..-|.+=...|.+-.+.|.
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333333333
No 65
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=29.16 E-value=1e+02 Score=24.86 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHE 208 (220)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~e 208 (220)
+..|--|.-+ .-|+-|.+|..||..|++|+++
T Consensus 93 L~~ILi~~P~--~~e~Kvedi~tifvnlHHLiNe 124 (223)
T KOG0570|consen 93 LLDILIRAPD--MREEKVEDIRTIFVNLHHLINE 124 (223)
T ss_pred HHHHHHhCch--hHHHHHHHHHHHHHHHHHHHhc
Confidence 3455556555 7789999999999999999875
No 66
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=28.90 E-value=1.8e+02 Score=20.75 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 027690 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMT 217 (220)
Q Consensus 180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE 217 (220)
.-.+.|.+++..|.-..+=.+.|..=|.-||+.++.|.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~ 87 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLIL 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666666667787777775
No 67
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.77 E-value=3.6e+02 Score=22.82 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=21.6
Q ss_pred HhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 45 AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 45 ~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
.+..+-|-......|...+..+..-+..++..+..+..
T Consensus 153 a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~ 190 (267)
T PF10234_consen 153 ALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLAS 190 (267)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665555555555555555555555555555544
No 68
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=28.10 E-value=2.2e+02 Score=20.04 Aligned_cols=42 Identities=7% Similarity=0.121 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNT 62 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l 62 (220)
|..+|.+|......+...|..|++..+. ..+.+++...|..+
T Consensus 38 y~~~~~~iT~~f~~~S~ei~~ie~~L~~---~~~~~~la~~i~~l 79 (97)
T PF14966_consen 38 YRQLCHEITQEFSAISKEILAIEAELRD---EHERPDLAELIREL 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccCCHHHHHHHHHH
Confidence 7778888888888888777777765432 33344444444443
No 69
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.05 E-value=3e+02 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690 57 QKLHNTRQRILQLVKDTSAKLKSVS 81 (220)
Q Consensus 57 ~~i~~l~~~i~~l~~~~~~~lk~l~ 81 (220)
.+|.....+++.+.+++...=++|.
T Consensus 164 ~~i~~~V~~iN~ll~~Ia~LN~~I~ 188 (431)
T PRK06799 164 EDIEAHVNEFNRLAKSLAEANKKIG 188 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444443
No 70
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.33 E-value=1.6e+02 Score=18.63 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 22 SQAVAAGIFQINTAVAAFRRLVDA 45 (220)
Q Consensus 22 ~~~i~~~i~~i~~~i~~l~~l~~~ 45 (220)
++.++..|..++..|..|..-++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443
No 71
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=27.25 E-value=2.1e+02 Score=19.64 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 64 QRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQ 116 (220)
Q Consensus 64 ~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~ 116 (220)
.++.++..+.+.-|..|..+..++... .-|++++.+.|+.|++.--
T Consensus 43 ~e~~eiAsq~r~~i~amRsiGt~~~~~-------~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 43 AEAMEIASQARSMIQAMRSIGTHPKNS-------EGLADDLLENLQAYQKRMG 88 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCc-------cchHHHHHHHHHHHHHHHh
Confidence 344555666666666666654332211 2577888888888876543
No 72
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.16 E-value=3.4e+02 Score=26.05 Aligned_cols=55 Identities=7% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCchhhhhHHHHHHHHHHHHHHHH
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSVSES-DRDTDVNQNKKVEDAKLARDFQTVLQ 109 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l~~~-~~~~~~~~~~k~q~~~L~~~f~~~l~ 109 (220)
...+|.....+|+.+.++|...=++|... ............+++.|.+++...+.
T Consensus 158 ~n~~I~~~V~~IN~l~~qIA~LN~~I~~~~~~~g~~~ndLlDqRD~ll~eLS~~v~ 213 (651)
T PRK06945 158 VNTQLTSSVTQINSYTKQIAQLNDQIAKAESSQGQPPNDLLDQRDQLVSELSKLVG 213 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHhhcC
Confidence 34456666666666655554444444332 10000111234455666665555443
No 73
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=27.03 E-value=1.2e+02 Score=19.30 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 185 I~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
++.|+.-+..|-..|.....--...++.+++.|.
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~ 36 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEH 36 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444445555555555555555555555555553
No 74
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.89 E-value=3.7e+02 Score=22.27 Aligned_cols=91 Identities=12% Similarity=0.256 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHH
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH-NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAK 99 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~-~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~ 99 (220)
+-.+|...+.+|...|..+......+.+. .++.-+++++ +|..+|+.| ..++++||...+.. ..+ -+..+.-
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~-~n~~QKEK~E~DLKkEIKKL-QR~RdQIK~W~~~~----diK-dk~~L~e 78 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESA-TNQNQKEKLEADLKKEIKKL-QRLRDQIKTWLSSN----DIK-DKKKLLE 78 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcchHHHHHHHHHHHHHHH-HHHHHHHHHHccCc----ccc-cHHHHHH
Confidence 56788888999999999999988876543 2233356664 343344333 45667777665422 111 2233445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027690 100 LARDFQTVLQEFQKIQQLA 118 (220)
Q Consensus 100 L~~~f~~~l~~f~~~q~~~ 118 (220)
-.+.+...|.+|..+.+..
T Consensus 79 ~Rk~IE~~MErFK~vEkes 97 (233)
T PF04065_consen 79 NRKLIEEQMERFKVVEKES 97 (233)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5667777888888887663
No 75
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.42 E-value=4.3e+02 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027690 99 KLARDFQTVLQEFQKIQQL 117 (220)
Q Consensus 99 ~L~~~f~~~l~~f~~~q~~ 117 (220)
.|.+++..++++|++++-.
T Consensus 270 ~lNnqL~~l~q~fr~a~~~ 288 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRATDT 288 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555444
No 76
>PRK04406 hypothetical protein; Provisional
Probab=26.01 E-value=2.1e+02 Score=19.14 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 027690 172 AFNEAIIEEREHGLREIEEQIGQ 194 (220)
Q Consensus 172 ~~~~~~i~eR~~eI~~Ie~~I~e 194 (220)
.|+...|.+=.+.|.+-.+.|..
T Consensus 21 AfQE~tIe~LN~~v~~Qq~~I~~ 43 (75)
T PRK04406 21 AFQEQTIEELNDALSQQQLLITK 43 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333333333333
No 77
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.01 E-value=2.2e+02 Score=19.31 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 29 IFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 29 i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
+.++...+.++.+.++.+.. +-..+..++..+...++.+..+++..++.+..
T Consensus 21 l~~l~~~l~~~~~ti~~l~~--~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQE--QVDPITKEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444321 11223344555555555555555555544433
No 78
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=25.47 E-value=1e+02 Score=21.33 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027690 185 LREIEEQIGQANEIFKDLAVL 205 (220)
Q Consensus 185 I~~Ie~~I~eln~IF~dLa~l 205 (220)
|++|-..|.-+-.||.||+.=
T Consensus 51 IrELN~NI~rVv~lY~dLs~s 71 (87)
T PF07011_consen 51 IRELNGNISRVVDLYSDLSSS 71 (87)
T ss_pred HHHHHhhHHHHHHHHHHHhHH
Confidence 556777788888888888764
No 79
>PF03581 Herpes_UL33: Herpesvirus UL33-like protein; InterPro: IPR005208 This is a family of Herpesvirus proteins including UL33 P10217 from SWISSPROT,UL51 P16792 from SWISSPROT. The proteins in this family are involved in packaging viral DNA.; GO: 0019073 viral DNA genome packaging
Probab=24.92 E-value=1.2e+02 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.378 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 176 AIIEEREHGLREIEEQIGQANEIFKD 201 (220)
Q Consensus 176 ~~i~eR~~eI~~Ie~~I~eln~IF~d 201 (220)
..+.+|-+-+.+|=+-+.|+++|+.|
T Consensus 50 ~vl~~K~e~~~~vi~K~ld~~~IL~~ 75 (75)
T PF03581_consen 50 EVLERKRERFAQVINKFLDLHQILED 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57888889999999999999999864
No 80
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.87 E-value=2.5e+02 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 027690 20 SPSQAVAAGIFQINTAVAAFRRL 42 (220)
Q Consensus 20 ~~~~~i~~~i~~i~~~i~~l~~l 42 (220)
..+.-|...+.-....+.-|+++
T Consensus 7 ~~~~~v~~el~~t~~d~~LLe~m 29 (99)
T PF10046_consen 7 KVSKYVESELEATNEDYNLLENM 29 (99)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 81
>PRK02119 hypothetical protein; Provisional
Probab=24.73 E-value=2.2e+02 Score=18.90 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=10.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 171 IAFNEAIIEEREHGLREIEEQIGQAN 196 (220)
Q Consensus 171 ~~~~~~~i~eR~~eI~~Ie~~I~eln 196 (220)
+.|+...|.+=...|.+-.+.|..|.
T Consensus 18 la~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 18 IAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 82
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.63 E-value=3.6e+02 Score=21.36 Aligned_cols=46 Identities=7% Similarity=0.239 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 027690 35 AVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD 84 (220)
Q Consensus 35 ~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~ 84 (220)
.++.+..-++.|.+..-.+++.+.|..|..++ +.-+..|+.+....
T Consensus 101 t~s~veaEik~L~s~Lt~eemQe~i~~L~kev----~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 101 TCSYVEAEIKELSSALTTEEMQEEIQELKKEV----AGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 33333333445555555566666666554333 45556677776643
No 83
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=24.52 E-value=2.2e+02 Score=18.96 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027690 173 FNEAIIEEREHGLREIEE 190 (220)
Q Consensus 173 ~~~~~i~eR~~eI~~Ie~ 190 (220)
+.+..+.++|++|++|+.
T Consensus 29 ~r~~~l~~~~e~~Rei~a 46 (81)
T KOG4326|consen 29 FRLRQLREYHEDIREIDA 46 (81)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 456788999999999983
No 84
>PF02524 KID: KID repeat; InterPro: IPR003900 This group of proteins contains the KID repeat as found in Borrelia and spirochete Repeat motif-containing proteins including RepA/Rep+, RepU and various Bdr proteins. RepA and related Borrelia proteins have been suggested to play an important genus-wide role in the biology of the Borrelia []. Bdr proteins are polymorphic inner membrane proteins produced by most Borrelia species []. The bdr genes of encode proteins that form three distinct subfamilies: BdrD, BdrE, and BdrF. bdr orthologues have been appear to be present in all Borrelia species that have been analysed []. It is thought that BdrF2 and the other proteins encoded by the operon form an inner-membrane-associated protein complex that may interact with DNA and which may act during transmission or in the early stages of infection [].
Probab=23.76 E-value=25 Score=14.53 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=5.2
Q ss_pred hhhhccCC
Q 027690 213 IGKMTNTK 220 (220)
Q Consensus 213 vD~IE~N~ 220 (220)
||++|.|+
T Consensus 2 ID~VEknL 9 (11)
T PF02524_consen 2 IDSVEKNL 9 (11)
T ss_pred cchHhhhc
Confidence 57777663
No 85
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=23.34 E-value=3e+02 Score=20.09 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHH
Q 027690 28 GIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTV 107 (220)
Q Consensus 28 ~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~ 107 (220)
.+..+...+..+......+....|... .......+......+...+..+.....++ .. ..+...|...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~ 117 (181)
T PF12729_consen 50 LLNDIRSNLQRIRRALRRYLLATDPEE----RQEIEKEIDEARAEIDEALEEYEKLILSP-EE-------KQLLEEFKEA 117 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HH-------HHHHHHHHHH
Confidence 345555566666666555443334332 33344445555566666666666543211 11 2456667777
Q ss_pred HHHHHHHHHHHHHHHh
Q 027690 108 LQEFQKIQQLASERES 123 (220)
Q Consensus 108 l~~f~~~q~~~~~~~k 123 (220)
+..|...........+
T Consensus 118 ~~~y~~~~~~~~~~~~ 133 (181)
T PF12729_consen 118 WKAYRKLRDQVIELAK 133 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666655544333
No 86
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=4.2e+02 Score=21.64 Aligned_cols=92 Identities=8% Similarity=0.162 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-Cchhh-hhHHHHH
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRD-TDVNQ-NKKVEDA 98 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~-~~~~~-~~k~q~~ 98 (220)
++..+...+.++...+.++++..+. .+ +..+...+...+.++...+.++...... ++..+ ..+..++
T Consensus 4 ly~~t~~~~~k~q~~l~rlE~~~~~----~e-------~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~d 72 (213)
T KOG3251|consen 4 LYQSTNRQLDKLQRGLIRLERTIKT----QE-------VSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVD 72 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc----cc-------hHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHH
Confidence 4455555555555555555543332 22 3333333444444555555555543221 22222 2333466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 99 KLARDFQTVLQEFQKIQQLASERES 123 (220)
Q Consensus 99 ~L~~~f~~~l~~f~~~q~~~~~~~k 123 (220)
.|..+|..+-...+...++-..|+.
T Consensus 73 Ql~~d~~~l~~~l~~~~~R~~~r~~ 97 (213)
T KOG3251|consen 73 QLLEDVEHLQTSLRTSMNRNNRREQ 97 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6777777776666666655555443
No 87
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=22.95 E-value=1.6e+02 Score=22.43 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690 182 EHGLREIEEQIGQANEIFKDLAVLVHE 208 (220)
Q Consensus 182 ~~eI~~Ie~~I~eln~IF~dLa~lV~e 208 (220)
.+++.+++.++.+.-+-|++||.+|..
T Consensus 11 ~ekl~~l~~~le~~~e~~~~Lgl~vs~ 37 (147)
T KOG3046|consen 11 QEKLAQLENSLEKFLENFRQLGLIVSN 37 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 356778888888888999999998863
No 88
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.42 E-value=3.7e+02 Score=20.71 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 54 DHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQL 117 (220)
Q Consensus 54 ~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~ 117 (220)
.+|.+|+....+++.+-+.|...=+.+..+... -..+..-...|...+.+++..+..++-.
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea---~nEknkeK~~Lv~~L~eLv~eSE~~rmK 148 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEA---FNEKNKEKAQLVTRLMELVSESERLRMK 148 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777766666553210 0111122345777777777776665433
No 89
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=22.15 E-value=3.3e+02 Score=20.03 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 60 HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQ 116 (220)
Q Consensus 60 ~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~ 116 (220)
.++...+..|+..+..++..++. +++.--....+-+-++..++.+|+..-.
T Consensus 3 Kdt~~kmkeL~e~~~~D~~K~EK------GNKAAGtRaRK~sleLeKLaKefRKeSi 53 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADAEKAEK------GNKAAGTRARKASLELEKLAKEFRKESI 53 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666654432 2222222334455567777777776643
No 90
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.80 E-value=2.1e+02 Score=19.77 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 64 QRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120 (220)
Q Consensus 64 ~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~ 120 (220)
.++...+..+...+.....................-|.+.+..+-.....+.+...-
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555443211222333344455666666666666666666433
No 91
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=21.76 E-value=2.9e+02 Score=19.26 Aligned_cols=102 Identities=10% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhH-----HHH
Q 027690 24 AVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH-RQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK-----VED 97 (220)
Q Consensus 24 ~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~-r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k-----~q~ 97 (220)
+.-..+..|...|..|...+..|...+..... ...-..+...+..+...++...+.+....+.-....... ..-
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~ 84 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASD 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhh
Confidence 34456677777788777777666543321100 001123444555556666666555544321000000000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027690 98 AKLARDFQTVLQEFQKIQQLASERESTY 125 (220)
Q Consensus 98 ~~L~~~f~~~l~~f~~~q~~~~~~~k~~ 125 (220)
.........+...|+.+-..|..-.+.|
T Consensus 85 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 112 (117)
T smart00503 85 RTRKAQTEKLRKKFKEVMNEFQRLQRKY 112 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235556666777777777776655544
No 92
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.74 E-value=3.2e+02 Score=23.20 Aligned_cols=60 Identities=8% Similarity=0.258 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLD-HRQKLHNTRQRILQLVKDTSAKLKSV 80 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~-~r~~i~~l~~~i~~l~~~~~~~lk~l 80 (220)
.=++|..+|.+|...+..|+.+.-.+|+--|.+. .-..|+..+....-.+...+.+++.|
T Consensus 212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 3357999999999999999999877776555442 22445555555555555555555543
No 93
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.59 E-value=5.5e+02 Score=22.47 Aligned_cols=86 Identities=8% Similarity=0.056 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHH
Q 027690 26 AAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQ 105 (220)
Q Consensus 26 ~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~ 105 (220)
.+...++.....+|+..++.+.... +++.+-...+...+..-.+.++...+.|.....+ .........++|..+.+
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKl--eel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~--~~~e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKL--EELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS--LSAEERELIEKLEEDIK 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CChhHHHHHHHHHHHHH
Confidence 3444555555555555555432111 1122222223333333333333333333333221 12233445566777766
Q ss_pred HHHHHHHHHH
Q 027690 106 TVLQEFQKIQ 115 (220)
Q Consensus 106 ~~l~~f~~~q 115 (220)
+.-..|.+.+
T Consensus 79 ~r~~~l~DmE 88 (330)
T PF07851_consen 79 ERRCQLFDME 88 (330)
T ss_pred HHHhhHHHHH
Confidence 6666666555
No 94
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.14 E-value=2.5e+02 Score=18.40 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027690 55 HRQKLH 60 (220)
Q Consensus 55 ~r~~i~ 60 (220)
++.++.
T Consensus 78 i~~~~~ 83 (105)
T PF00435_consen 78 IQEKLE 83 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!