Query 027690
Match_columns 220
No_of_seqs 118 out of 1005
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 2.2E-30 7.7E-35 216.4 12.3 193 18-220 33-237 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 6.8E-29 2.3E-33 208.9 14.6 190 18-220 46-254 (279)
3 1fio_A SSO1 protein; four heli 99.9 6.3E-28 2.2E-32 193.0 9.0 182 18-210 7-196 (196)
4 2dnx_A Syntaxin-12; snare, HAB 99.9 5.9E-21 2E-25 142.6 15.6 117 13-129 6-125 (130)
5 1n7s_B Syntaxin 1A; neuronal s 99.7 9.2E-18 3.1E-22 111.4 5.5 46 175-220 4-49 (68)
6 3b5n_B Protein SSO1; snare com 99.7 1E-17 3.5E-22 111.4 5.5 46 175-220 2-47 (69)
7 1gl2_B Syntaxin 7; membrane pr 99.7 5.8E-18 2E-22 111.3 4.0 45 176-220 2-46 (65)
8 1jth_B Syntaxin 1A; coiled-coi 99.7 1.5E-17 5E-22 113.1 5.5 46 175-220 2-47 (77)
9 1sfc_B Protein (syntaxin 1A), 99.7 3.3E-17 1.1E-21 112.9 5.6 47 174-220 12-58 (83)
10 2nps_B Syntaxin 13, vesicle-as 99.7 4.8E-17 1.7E-21 108.8 4.3 42 179-220 2-43 (71)
11 3hd7_B Syntaxin-1A; membrane p 99.6 1.3E-15 4.4E-20 110.2 5.7 47 174-220 12-58 (109)
12 3c98_B Syntaxin-1A; protein co 99.6 8.7E-15 3E-19 121.5 10.1 191 18-219 45-248 (279)
13 1ez3_A Syntaxin-1A; three heli 99.5 5.9E-13 2E-17 98.7 13.6 109 18-126 10-126 (127)
14 1s94_A S-syntaxin; three helix 99.4 2.2E-13 7.6E-18 107.1 8.4 113 18-130 41-161 (180)
15 1hs7_A Syntaxin VAM3; UP-and-D 99.4 1.4E-11 4.8E-16 86.2 12.0 90 22-126 5-95 (97)
16 2nps_D Syntaxin-6; vesicle fus 89.3 0.24 8.3E-06 33.0 2.7 43 176-218 12-54 (82)
17 1gl2_D Syntaxin 8, vesicle tra 89.2 0.48 1.6E-05 29.9 4.0 42 177-218 3-44 (65)
18 1n7s_D SNAP-25A; neuronal snar 87.9 1.2 4.2E-05 28.1 5.3 39 180-218 7-45 (66)
19 1sfc_D Protein (SNAP-25B), pro 86.1 2.2 7.7E-05 28.5 6.1 40 179-218 25-64 (87)
20 2c5k_T Syntaxin TLG1, T-snare 77.7 14 0.00047 25.1 9.0 84 18-111 8-91 (95)
21 1l4a_D S-SNAP25 fusion protein 77.6 3.9 0.00013 27.3 4.7 39 180-218 27-65 (87)
22 1nhl_A Synaptosomal-associated 75.4 3.5 0.00012 24.9 3.6 20 199-218 16-35 (54)
23 3b5n_D Protein transport prote 71.2 11 0.00036 23.6 5.3 38 181-218 8-45 (64)
24 1l4a_C S-SNAP25 fusion protein 68.6 6.9 0.00023 26.0 4.1 26 194-219 38-63 (83)
25 4dnd_A Syntaxin-10, SYN10; str 66.4 33 0.0011 24.6 9.0 65 17-81 28-94 (130)
26 2jqq_A Conserved oligomeric go 63.0 31 0.0011 26.5 7.3 56 61-125 131-186 (204)
27 3ajm_A Programmed cell death p 57.4 66 0.0023 25.0 9.5 26 93-118 149-174 (213)
28 3b5n_C Protein transport prote 55.6 14 0.00047 23.6 3.6 15 205-219 34-48 (70)
29 3swy_A Cyclic nucleotide-gated 51.0 34 0.0012 19.9 4.7 27 96-122 13-39 (46)
30 1n7s_C SNAP-25A; neuronal snar 50.6 48 0.0017 21.4 6.5 36 184-219 24-59 (79)
31 3b5n_D Protein transport prote 50.2 43 0.0015 20.8 5.5 29 23-51 6-34 (64)
32 2beq_A E2 glycoprotein; viral 47.9 30 0.001 19.3 3.7 31 185-215 1-31 (38)
33 3swf_A CGMP-gated cation chann 43.2 48 0.0017 21.3 4.7 27 96-122 15-41 (74)
34 3ghg_A Fibrinogen alpha chain; 42.1 1.9E+02 0.0064 25.8 10.6 24 96-119 132-155 (562)
35 3f6n_A Virion-associated prote 38.7 75 0.0026 22.4 5.4 26 23-48 9-34 (129)
36 3efg_A Protein SLYX homolog; x 38.0 75 0.0026 20.5 5.1 18 180-197 39-56 (78)
37 1n7s_A Vesicle-associated memb 35.6 75 0.0026 19.3 4.7 26 171-196 20-45 (63)
38 1sfc_D Protein (SNAP-25B), pro 35.1 94 0.0032 20.3 5.9 63 18-80 20-83 (87)
39 1n7s_D SNAP-25A; neuronal snar 33.8 82 0.0028 19.2 5.9 28 22-49 5-32 (66)
40 2d4y_A HAP1, flagellar HOOK-as 31.5 71 0.0024 27.7 5.5 27 56-82 95-121 (463)
41 1l4a_A Synaptobrevin; snare, s 31.3 71 0.0024 20.6 4.2 27 170-196 30-56 (80)
42 3b5n_A Synaptobrevin homolog 1 30.2 84 0.0029 19.0 4.2 26 172-197 19-44 (61)
43 1gl2_A Endobrevin; membrane pr 30.1 83 0.0028 19.3 4.2 27 171-197 25-51 (65)
44 1lyp_A CAP18; lipopolysacchari 28.9 64 0.0022 16.5 4.3 26 55-80 2-27 (32)
45 1sfc_A VAMP 2, protein (synapt 27.4 86 0.003 21.0 4.2 29 169-197 44-72 (96)
46 1jcd_A Major outer membrane li 26.7 1.1E+02 0.0036 18.2 4.0 25 21-45 5-29 (52)
47 1l4a_D S-SNAP25 fusion protein 25.2 79 0.0027 20.8 3.6 33 18-50 21-53 (87)
48 4g2k_A General control protein 23.6 2E+02 0.0067 20.3 8.1 28 20-47 21-48 (125)
49 1z23_A CRK-associated substrat 22.8 1.8E+02 0.0062 21.6 5.6 99 21-119 12-113 (163)
50 2q12_A DIP13 alpha, DCC-intera 22.8 2.7E+02 0.0093 21.7 9.8 30 15-44 15-45 (265)
51 1gl2_D Syntaxin 8, vesicle tra 22.5 1.4E+02 0.0047 18.1 4.5 25 24-48 6-30 (65)
52 1deq_A Fibrinogen (alpha chain 22.5 3.6E+02 0.012 22.9 9.7 22 23-44 63-84 (390)
53 1fio_A SSO1 protein; four heli 21.1 2.5E+02 0.0086 20.7 8.3 181 23-213 5-192 (196)
54 3t98_B Nucleoporin NUP58/NUP45 20.9 1.7E+02 0.0057 19.6 4.6 30 18-47 10-39 (93)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.97 E-value=2.2e-30 Score=216.37 Aligned_cols=193 Identities=20% Similarity=0.206 Sum_probs=149.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIG-TSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~-t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~ 89 (220)
|+..|++|...|..|..++..|+++++.++ ++.+...++.+|+.++.+|+.+++.|...|+.|.... .++..
T Consensus 33 F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e 112 (267)
T 1dn1_B 33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD 112 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 999999999999999999999999998755 4655568999999999999999999999999997641 12233
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCC-CCCCCCC--CCCCCCCCCCchhHHHHHHHHHHH
Q 027690 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPP-SSA-PPSTTDT--SGSGDFMGSENQPFLMEQKRQELF 165 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~-~~~-~~~~~~e--~~~~~~~~~e~~~l~~~~~~qq~~ 165 (220)
.+.+++++..|+++|++++..|+.+|..|+++++..+.+... .++ +++++.+ .+.|.+..|.+..++. . +
T Consensus 113 ~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~-~--~--- 186 (267)
T 1dn1_B 113 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMD-S--S--- 186 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC-S--H---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHh-h--H---
Confidence 488999999999999999999999999999999875543211 011 1111111 0123334444321221 0 0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 166 LLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 166 ~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
.....+.+|++||++|.+||++|.|||+||.|||+||++||++||+||+|.
T Consensus 187 ----~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv 237 (267)
T 1dn1_B 187 ----ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 237 (267)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 112346799999999999999999999999999999999999999999983
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.96 E-value=6.8e-29 Score=208.88 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=144.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---------
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTL--DHRQKLHNTRQRILQLVKDTSAKLKSVSESDR--------- 85 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~--~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~--------- 85 (220)
|+..+++|...|..|+.+|..|.++++. |+++.+.. .++.+|+.++..|+.+++.|+..|+.|.....
T Consensus 46 F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~ 125 (279)
T 2xhe_B 46 FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFE 125 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999975 78888777 79999999999999999999999999997321
Q ss_pred --CCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CC-CCCC--CCCCCCCCCchhHHHH
Q 027690 86 --DTD-VNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP-ST-TDTS--GSGDFMGSENQPFLME 158 (220)
Q Consensus 86 --~~~-~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~-~~-~~e~--~~~~~~~~e~~~l~~~ 158 (220)
++. ..+++++++.+|+++|++++..|+.+|..|.++++....+......+. .+ +.+. ..|.... |.+
T Consensus 126 ~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~-----f~q- 199 (279)
T 2xhe_B 126 DGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGI-----FSG- 199 (279)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-------------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHH-----HHH-
Confidence 111 347899999999999999999999999999999997765542211111 11 0000 0011111 111
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 159 QKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 159 ~~~qq~~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
.. . ......+.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 200 ---~~--~--~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv 254 (279)
T 2xhe_B 200 ---MR--L--EGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSV 254 (279)
T ss_dssp -----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHH
T ss_pred ---HH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 00 0 0112334689999999999999999999999999999999999999999983
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.95 E-value=6.3e-28 Score=192.99 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=136.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhH
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTL--DHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK 94 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~--~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k 94 (220)
|+..+++|+..|..|+.++..|.++++. |+++.+.. .++.+|+.++.+|+.+++.|+..|+.|.... ...+.++
T Consensus 7 f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~---~~~r~~k 83 (196)
T 1fio_A 7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTNKQ 83 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhHHH
Confidence 9999999999999999999999999998 55555443 6899999999999999999999999999864 2468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCC--CC-CCCCCCCCchhHHHHHHHHHHHHHhh
Q 027690 95 VEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP--STTDT--SG-SGDFMGSENQPFLMEQKRQELFLLDN 169 (220)
Q Consensus 95 ~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~--~~~~e--~~-~~~~~~~e~~~l~~~~~~qq~~~~~~ 169 (220)
+++.+|+++|++++..|+.+|..|.+++|..+.+......|. +.+.+ .. .++...|. ++++....+ .
T Consensus 84 ~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~-~~~~~~~~~-------~ 155 (196)
T 1fio_A 84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFS-QALLNANRR-------G 155 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHH-HHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHH-HHHHhccch-------H
Confidence 999999999999999999999999999987654321100011 00000 00 00000000 011110000 1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690 170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQG 210 (220)
Q Consensus 170 e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQG 210 (220)
.+...+.+|++||++|++||++|.|||+||+|||+||++||
T Consensus 156 ~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 156 EAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22345689999999999999999999999999999999998
No 4
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.9e-21 Score=142.65 Aligned_cols=117 Identities=25% Similarity=0.352 Sum_probs=107.0
Q ss_pred CCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CCch
Q 027690 13 SPSSS-SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR--DTDV 89 (220)
Q Consensus 13 ~~~~~-f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~--~~~~ 89 (220)
++++| |..+++.|+.+|++|+.+|..|+++++.|||++|++++|++||.+..+|+.+++++...||+|..+.+ .+.+
T Consensus 6 ~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~ 85 (130)
T 2dnx_A 6 SGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSE 85 (130)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 34455 99999999999999999999999999999999999999999999999999999999999999999863 2346
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027690 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV 129 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~ 129 (220)
++.++++.++|+++|+.++++|+.+|+.+.+++|..+..+
T Consensus 86 ~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~a 125 (130)
T 2dnx_A 86 QRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARS 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6889999999999999999999999999999998765544
No 5
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.71 E-value=9.2e-18 Score=111.38 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
+.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv 49 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 49 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999983
No 6
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.71 E-value=1e-17 Score=111.44 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
+..|++|+++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv 47 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNV 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999983
No 7
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.70 E-value=5.8e-18 Score=111.26 Aligned_cols=45 Identities=42% Similarity=0.695 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 176 ~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
++|++|+++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv 46 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANV 46 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999983
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.70 E-value=1.5e-17 Score=113.11 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
+.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv 47 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999983
No 9
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.68 E-value=3.3e-17 Score=112.86 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 174 NEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 174 ~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
.+.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv 58 (83)
T 1sfc_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999983
No 10
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.66 E-value=4.8e-17 Score=108.79 Aligned_cols=42 Identities=36% Similarity=0.643 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 179 ~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv 43 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANV 43 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999983
No 11
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.59 E-value=1.3e-15 Score=110.15 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690 174 NEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK 220 (220)
Q Consensus 174 ~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~ 220 (220)
.++++++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv 58 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999983
No 12
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.57 E-value=8.7e-15 Score=121.54 Aligned_cols=191 Identities=19% Similarity=0.232 Sum_probs=138.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------CCch
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR-------DTDV 89 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~-------~~~~ 89 (220)
|+..++.|...|.+|...+..|.+++.. +.++.+.......++.++..++.++..|...++.|..+.. ....
T Consensus 45 f~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~ 124 (279)
T 3c98_B 45 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD 124 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence 8899999999999999999999999875 6777777778889999999999999999988888876421 1223
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCCCCCCC-CCCCCCCCCCCchhHHHHHHHHHH
Q 027690 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV----PPSSAPPSTTD-TSGSGDFMGSENQPFLMEQKRQEL 164 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~----~~~~~~~~~~~-e~~~~~~~~~e~~~l~~~~~~qq~ 164 (220)
.+....+...|...|.....+|...+..|...++..+.+. ..+..+..... ........... ....
T Consensus 125 i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------- 195 (279)
T 3c98_B 125 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFAS--GIIM------- 195 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTT--TSCS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHH--HHHH-------
Confidence 4667788899999999999999999999987776433211 11100000000 00000000000 0000
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
....+......+++|+.+|.+|+.+|.+|+++|.+|+.+|.+||+++|+|++|
T Consensus 196 --~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~n 248 (279)
T 3c98_B 196 --DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 248 (279)
T ss_dssp --CSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111223468999999999999999999999999999999999999999987
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.49 E-value=5.9e-13 Score=98.73 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=97.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~ 89 (220)
|+..|++|...|..|...|..|.+++.. |.++.....++.+|+.++.+|+.+++.|+..|+.|.... .+++.
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~ 89 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHH
Confidence 9999999999999999999999999886 677777778999999999999999999999999998632 12334
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027690 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYS 126 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~ 126 (220)
.|.++.++..|++.|+++|..|+.+|..|+++++..+
T Consensus 90 ~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 90 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999999998754
No 14
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.44 E-value=2.2e-13 Score=107.08 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~ 89 (220)
|+..|+.|...|..|..+|..|.+++.. |+++.+...++.+|+.++.+|+.+++.|+..|+.|.... .+++.
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~ 120 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSAD 120 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHH
Confidence 9999999999999999999999999987 788887788999999999999999999999999999632 12344
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 027690 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVP 130 (220)
Q Consensus 90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~ 130 (220)
.++++.++..|+++|+++|..|+.+|..|++++|..+.++.
T Consensus 121 ~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~ 161 (180)
T 1s94_A 121 LRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQM 161 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998876653
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.36 E-value=1.4e-11 Score=86.18 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHH
Q 027690 22 SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH-NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKL 100 (220)
Q Consensus 22 ~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~-~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L 100 (220)
..+....|.++..+|..|++++..|||.+|++.||.+|+ .++.+|+.+.+++. .|..++ +.++|
T Consensus 5 ~~d~~~li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~-----------qkeRL 69 (97)
T 1hs7_A 5 TKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH-----------QNGKL 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-----------HCHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-----------hhhHH
Confidence 356677788888888899999999999999999999999 99999999999888 332221 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027690 101 ARDFQTVLQEFQKIQQLASERESTYS 126 (220)
Q Consensus 101 ~~~f~~~l~~f~~~q~~~~~~~k~~~ 126 (220)
.++|..+++.|+.+|+.|.++.+.++
T Consensus 70 ~~dF~~l~~~fQ~~qr~y~ek~~e~~ 95 (97)
T 1hs7_A 70 SADFKNLKTKYQSLQQSYNQRKSLFP 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999764
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=89.26 E-value=0.24 Score=32.98 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 176 ~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
.++++-++.+..|..+|..|..|-.+++.=|.+|..+||.|+.
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~ 54 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSH 54 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4556667788999999999999999999999999999999875
No 17
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=89.22 E-value=0.48 Score=29.94 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 177 ~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
++++-++.+..|..+|..|+.|-.+++.=|..|..+||.|+.
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~ 44 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLAN 44 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566778899999999999999999999999999999875
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=87.88 E-value=1.2 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
+-++.+..|...|..|+.|-.+++.=|..|..+||+|+.
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~ 45 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIME 45 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678889999999999999999999999999999975
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=86.09 E-value=2.2 Score=28.51 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 179 ~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
.+-++.+..|...|..|+.|-.+|+.=|..|..+||+|+.
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~ 64 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIME 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677889999999999999999999999999999975
No 20
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=77.69 E-value=14 Score=25.06 Aligned_cols=84 Identities=7% Similarity=0.177 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHH
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVED 97 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~ 97 (220)
|.....++.+.|..+...+.+ ..++ .+...+..+....+++...+.++...|.-++.. .+..-..++...
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~-------~~~~-~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--~~~EI~~Rk~~v 77 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITR-------HNTA-GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD--ENEDVSGREAQV 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------TCCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS--TTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------ccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 888888888888887776443 2221 112445566666666666667777777776654 223334566666
Q ss_pred HHHHHHHHHHHHHH
Q 027690 98 AKLARDFQTVLQEF 111 (220)
Q Consensus 98 ~~L~~~f~~~l~~f 111 (220)
..|.+++..+-..|
T Consensus 78 ~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 78 KNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777766665554
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=77.59 E-value=3.9 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
+-++.+..|...|..|+.|=.+|+.=|..|..+||+|+.
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~ 65 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQ 65 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999974
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=75.39 E-value=3.5 Score=24.94 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhhhhhhcc
Q 027690 199 FKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 199 F~dLa~lV~eQGe~vD~IE~ 218 (220)
=..-....+.||+.|++|+.
T Consensus 16 g~~Tl~~L~~QgEql~r~~~ 35 (54)
T 1nhl_A 16 GIKTITMLDEQKEQLNRIEE 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhHHHHHh
Confidence 33444455666666666654
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=71.24 E-value=11 Score=23.63 Aligned_cols=38 Identities=8% Similarity=0.125 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690 181 REHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218 (220)
Q Consensus 181 R~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~ 218 (220)
=+..+.+|...+.-|+.|=.+|+.=|..|-++||+|+.
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~ 45 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999975
No 24
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=68.65 E-value=6.9 Score=25.96 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 194 QANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 194 eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
+..++=..=..+.+.||+.|++||.|
T Consensus 38 es~~~g~~Tl~~L~~QgEQL~rie~~ 63 (83)
T 1l4a_C 38 ESKEAGIRTLVMLDEQGEQLDRIEEG 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455778999999999865
No 25
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=66.38 E-value=33 Score=24.56 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=33.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690 17 SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSK--DTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81 (220)
Q Consensus 17 ~f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~--D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~ 81 (220)
||+...++|...|..+.....+-.++...-+++. +-..++..|......+...+.++...|.-+.
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999988877666554433331 1122334444443333333444444444333
No 26
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=63.02 E-value=31 Score=26.48 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027690 61 NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTY 125 (220)
Q Consensus 61 ~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~ 125 (220)
.++..+-.++..++..+..++... ++ -...++++|+.++..|+-.-+-..+||-..
T Consensus 131 ~l~~qL~~L~~~~~~ll~~l~dl~-----Sp----~l~h~RN~yq~i~q~Fqi~lk~LtdkClE~ 186 (204)
T 2jqq_A 131 GLIEQLYKLITASRRILESCADSN-----SP----YIHHLRNDYQDLLQEFQISLKILTEKCLEN 186 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-----cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555666666666665542 11 334788999999999999999999998753
No 27
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=57.42 E-value=66 Score=25.03 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 93 KKVEDAKLARDFQTVLQEFQKIQQLA 118 (220)
Q Consensus 93 ~k~q~~~L~~~f~~~l~~f~~~q~~~ 118 (220)
.+..++.-+++|..-.++|...-+.|
T Consensus 149 ~k~~le~~KreFVkySKrFS~TLKeY 174 (213)
T 3ajm_A 149 NRRALEHQKKEFVKYSKSFSDTLKTY 174 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHH
Confidence 34444555566666666555555554
No 28
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=55.57 E-value=14 Score=23.62 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=11.5
Q ss_pred HHHhhhhhhhhhccC
Q 027690 205 LVHEQGVVIGKMTNT 219 (220)
Q Consensus 205 lV~eQGe~vD~IE~N 219 (220)
+...||+.|++||.|
T Consensus 34 ~L~~QgEqL~rtE~~ 48 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGN 48 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 556788888888865
No 29
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=51.04 E-value=34 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 96 EDAKLARDFQTVLQEFQKIQQLASERE 122 (220)
Q Consensus 96 q~~~L~~~f~~~l~~f~~~q~~~~~~~ 122 (220)
..+.|..+|..++.+|...|.+.+.|.
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999888764
No 30
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=50.56 E-value=48 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT 219 (220)
Q Consensus 184 eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N 219 (220)
-+++.-.-+.|-.++=..-....+.||+.|++|+.+
T Consensus 24 s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ 59 (79)
T 1n7s_C 24 STRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEG 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence 344444455566666667777888999999999754
No 31
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=50.20 E-value=43 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 027690 23 QAVAAGIFQINTAVAAFRRLVDAIGTSKD 51 (220)
Q Consensus 23 ~~i~~~i~~i~~~i~~l~~l~~~l~t~~D 51 (220)
.++..+|.++...+.+|+.+...+|.--|
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid 34 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELD 34 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56888999999999999998877765433
No 32
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=47.89 E-value=30 Score=19.25 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 027690 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIGK 215 (220)
Q Consensus 185 I~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~ 215 (220)
|.++..++.-++.-+.-+...|.+||..+..
T Consensus 1 i~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~ 31 (38)
T 2beq_A 1 XSQIQESLTTTSTALGKLQDVVNQNAQALNT 31 (38)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456777788888888888899999987754
No 33
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=43.17 E-value=48 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 96 EDAKLARDFQTVLQEFQKIQQLASERE 122 (220)
Q Consensus 96 q~~~L~~~f~~~l~~f~~~q~~~~~~~ 122 (220)
..+.|..+|..++.+|...|.+.+.|.
T Consensus 15 sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 15 SVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888999999999999999888775
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.13 E-value=1.9e+02 Score=25.81 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 96 EDAKLARDFQTVLQEFQKIQQLAS 119 (220)
Q Consensus 96 q~~~L~~~f~~~l~~f~~~q~~~~ 119 (220)
++..|.+.+.+...+-++++..+.
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666655543
No 35
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=38.67 E-value=75 Score=22.42 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 027690 23 QAVAAGIFQINTAVAAFRRLVDAIGT 48 (220)
Q Consensus 23 ~~i~~~i~~i~~~i~~l~~l~~~l~t 48 (220)
..|+..+..+..-...|+.+.+.+|+
T Consensus 9 ~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 9 KEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444445555555555655
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.97 E-value=75 Score=20.50 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027690 180 EREHGLREIEEQIGQANE 197 (220)
Q Consensus 180 eR~~eI~~Ie~~I~eln~ 197 (220)
+-..+|..+..-+.-|.+
T Consensus 39 ~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 39 DARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 37
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=35.60 E-value=75 Score=19.31 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 171 IAFNEAIIEEREHGLREIEEQIGQAN 196 (220)
Q Consensus 171 ~~~~~~~i~eR~~eI~~Ie~~I~eln 196 (220)
+..+...+-+|.+-|..|+.--..|.
T Consensus 20 M~~NI~~vl~RGekLd~L~~ks~~L~ 45 (63)
T 1n7s_A 20 MRVNVDKVLERDQKLSELDDRADALQ 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556777888888887777666665
No 38
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.13 E-value=94 Score=20.30 Aligned_cols=63 Identities=8% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTL-DHRQKLHNTRQRILQLVKDTSAKLKSV 80 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~-~~r~~i~~l~~~i~~l~~~~~~~lk~l 80 (220)
....-.+....|..|...|.+|+.+.-.+|+--|.+ .+=+.|+.-...+...++....+++.|
T Consensus 20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999988777543332 222334444444444444444444443
No 39
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=33.77 E-value=82 Score=19.24 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 027690 22 SQAVAAGIFQINTAVAAFRRLVDAIGTS 49 (220)
Q Consensus 22 ~~~i~~~i~~i~~~i~~l~~l~~~l~t~ 49 (220)
-.+....|..+...|.+|+.+...+|.-
T Consensus 5 e~eqD~~Ld~L~~~v~~lk~la~~ig~E 32 (66)
T 1n7s_D 5 ENEMDENLEQVSGIIGNLRHMALDMGNE 32 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999999999987777643
No 40
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=31.53 E-value=71 Score=27.67 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027690 56 RQKLHNTRQRILQLVKDTSAKLKSVSE 82 (220)
Q Consensus 56 r~~i~~l~~~i~~l~~~~~~~lk~l~~ 82 (220)
..+|...+.+|+.+.++|...=+.|..
T Consensus 95 n~~i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 95 NIAIGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665555444443
No 41
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.25 E-value=71 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=18.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 170 EIAFNEAIIEEREHGLREIEEQIGQAN 196 (220)
Q Consensus 170 e~~~~~~~i~eR~~eI~~Ie~~I~eln 196 (220)
.+..+...|-+|.+-|..|+.--.+|.
T Consensus 30 iM~~NI~~vLeRGekLd~L~~kt~~L~ 56 (80)
T 1l4a_A 30 IMRVNVDKVLERDSKISELDDRADALQ 56 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344566788888888888776655543
No 42
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=30.21 E-value=84 Score=18.98 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 172 AFNEAIIEEREHGLREIEEQIGQANE 197 (220)
Q Consensus 172 ~~~~~~i~eR~~eI~~Ie~~I~eln~ 197 (220)
..+...+-+|.+-|..|..--.+|..
T Consensus 19 ~~NI~~vl~RgekLd~L~~ks~~L~~ 44 (61)
T 3b5n_A 19 RDNINKVAERGERLTSIEDKADNLAV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44567778888888888776666653
No 43
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.09 E-value=83 Score=19.32 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=20.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 171 IAFNEAIIEEREHGLREIEEQIGQANE 197 (220)
Q Consensus 171 ~~~~~~~i~eR~~eI~~Ie~~I~eln~ 197 (220)
+..+...|-+|.+-|..|..--.+|..
T Consensus 25 M~~NI~~vL~RgekLd~L~~ks~~L~~ 51 (65)
T 1gl2_A 25 MTQNVERILARGENLDHLRNKTEDLEA 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345667888899888888877777653
No 44
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=28.90 E-value=64 Score=16.47 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027690 55 HRQKLHNTRQRILQLVKDTSAKLKSV 80 (220)
Q Consensus 55 ~r~~i~~l~~~i~~l~~~~~~~lk~l 80 (220)
+|.++.....+|+...+.+...|+-|
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgl 27 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555556666666666555543
No 45
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.38 E-value=86 Score=21.01 Aligned_cols=29 Identities=17% Similarity=0.325 Sum_probs=22.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 169 NEIAFNEAIIEEREHGLREIEEQIGQANE 197 (220)
Q Consensus 169 ~e~~~~~~~i~eR~~eI~~Ie~~I~eln~ 197 (220)
..+..+...|-+|.+-|..|+.--.+|..
T Consensus 44 ~IM~~NI~kvLeRGEkLd~L~dkse~L~~ 72 (96)
T 1sfc_A 44 DIMRVNVDKVLERDQKLSELDDRADALQA 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456678899999999999887777764
No 46
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.71 E-value=1.1e+02 Score=18.24 Aligned_cols=25 Identities=8% Similarity=0.023 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDA 45 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~ 45 (220)
.++.++..+.+++..|..|..-+..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777665443
No 47
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.20 E-value=79 Score=20.76 Aligned_cols=33 Identities=6% Similarity=0.270 Sum_probs=26.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSK 50 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~ 50 (220)
....-.++...|..|...|.+|+.+...+|+--
T Consensus 21 ~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~El 53 (87)
T 1l4a_D 21 NDAREDDMENNMKEVSSMIGNLRNMAIDMGNEI 53 (87)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999999999988776443
No 48
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=23.57 E-value=2e+02 Score=20.27 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027690 20 SPSQAVAAGIFQINTAVAAFRRLVDAIG 47 (220)
Q Consensus 20 ~~~~~i~~~i~~i~~~i~~l~~l~~~l~ 47 (220)
+.++++-+.+.-+.+.|.+|++++..|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ig~L~ 48 (125)
T 4g2k_A 21 DKIEEILSKIYHIENEIARIKKLIGNLV 48 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4556666666777788888888887663
No 49
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=22.82 E-value=1.8e+02 Score=21.58 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc---hhhhhHHHH
Q 027690 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTD---VNQNKKVED 97 (220)
Q Consensus 21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~---~~~~~k~q~ 97 (220)
..+.+...=..+...|..|-.++...|...+--...+.++....+|...+..++..++.+-...++.. ....-+..+
T Consensus 12 A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~~L~ 91 (163)
T 1z23_A 12 AVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSDRTLH 91 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHH
Confidence 44555555566677777777777665433221000012444455566777777778877765433211 112233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027690 98 AKLARDFQTVLQEFQKIQQLAS 119 (220)
Q Consensus 98 ~~L~~~f~~~l~~f~~~q~~~~ 119 (220)
.+|++.++.+-..|+-+.....
T Consensus 92 ~kl~r~Lq~l~ds~qiL~~~~~ 113 (163)
T 1z23_A 92 AKLSRQLQKMEDVYQTLVVHGQ 113 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 7788888877777777766643
No 50
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=22.79 E-value=2.7e+02 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=22.7
Q ss_pred CCC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 027690 15 SSS-SKSPSQAVAAGIFQINTAVAAFRRLVD 44 (220)
Q Consensus 15 ~~~-f~~~~~~i~~~i~~i~~~i~~l~~l~~ 44 (220)
|+| |-..+..+...+..+...+..|.+..+
T Consensus 15 DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~ 45 (265)
T 2q12_A 15 DSPQTRSLLGVFEEDATAISNYMNQLYQAMH 45 (265)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 888888888888888887777777653
No 51
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.48 E-value=1.4e+02 Score=18.10 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 027690 24 AVAAGIFQINTAVAAFRRLVDAIGT 48 (220)
Q Consensus 24 ~i~~~i~~i~~~i~~l~~l~~~l~t 48 (220)
+....|..+...|..|+.+...+|.
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~Ig~ 30 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQEIGN 30 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456677788888888887776663
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.46 E-value=3.6e+02 Score=22.91 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027690 23 QAVAAGIFQINTAVAAFRRLVD 44 (220)
Q Consensus 23 ~~i~~~i~~i~~~i~~l~~l~~ 44 (220)
..+...|.+|+..|..+.+.++
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555555555555443
No 53
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.14 E-value=2.5e+02 Score=20.65 Aligned_cols=181 Identities=9% Similarity=0.104 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHH--HH
Q 027690 23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLD---HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKV--ED 97 (220)
Q Consensus 23 ~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~---~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~--q~ 97 (220)
...-..+..|...|..|...+..|...+...- ....-..+..++..+...+....+.+..... ..... ..
T Consensus 5 ~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk-----~l~~~~~~~ 79 (196)
T 1fio_A 5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIK-----SAQRDGIHD 79 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcchhh
Confidence 34556677788888888888887754432110 0011113455566666666666666543211 00000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHhhhhH-hHH
Q 027690 98 AKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSEN-QPFLMEQKRQELFLLDNEIA-FNE 175 (220)
Q Consensus 98 ~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~~~~~e~~~~~~~~~e~-~~l~~~~~~qq~~~~~~e~~-~~~ 175 (220)
.........+..+|+.+-..|....+.|........ .-.+. ..++....+. ..++......+. ..+.-+. ...
T Consensus 80 r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~-~rq~~---i~~~~~~~~e~~~~~~~~~~~~~-f~~~~~~~~~~ 154 (196)
T 1fio_A 80 TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQA-KRQYM---IIQPEATEDEVEAAISDVGGQQI-FSQALLNANRR 154 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHCTTCCHHHHHHHTSHHHHHHH-HHHHTC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hcCCCCCHHHHHHHHHcCCchhH-HHHHHHhccch
Confidence 224456777888899988888887777654321100 00000 0011110000 011110010110 0000000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027690 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213 (220)
Q Consensus 176 ~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~v 213 (220)
..+..=..+|..=+..|.+|-.=..||+.|..+=+.+|
T Consensus 155 ~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV 192 (196)
T 1fio_A 155 GEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELV 192 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334456788888888888888889988887766555
No 54
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.93 E-value=1.7e+02 Score=19.55 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=25.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 027690 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIG 47 (220)
Q Consensus 18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~ 47 (220)
|..++.+....|..-...|..+++.+..++
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888899999999999999999988866543
Done!