BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027692
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRO|A Chain A, Human Palmitoyl-Protein Thioesterase 1
pdb|3GRO|B Chain B, Human Palmitoyl-Protein Thioesterase 1
Length = 298
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCII 60
+L +GYN G SQG R V + C PP N +S+GG H G +P C S C
Sbjct: 84 KLQQGYNAXGFSQGGQFLRAVAQRCPS-PPXINLISVGGQHQGVFGLPRCPGESSHICDF 142
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ A YS VQ+ L + Y P Y FL +N E N +YK+
Sbjct: 143 IRKTLNAGAYSKVVQERLVQAEYWHDPIKEDVYRNHSIFLADINQE--RGINESYKKNLX 200
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKVS 162
+L+ V + F +D ++ P ++ WFG+Y G +P Q+ S
Sbjct: 201 ALKKFVXVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETS 242
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 3 ELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLC--GSGIFCII 60
+L +GYN +G SQG R V + C PP+ N +S+GG H G +P C S C
Sbjct: 77 KLQQGYNAMGFSQGGQFLRAVAQRCPS-PPMVNLISVGGQHQGVFGLPRCPGESSHICDF 135
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ A Y+ +Q+ L + Y P Y FL +N E N +YK+
Sbjct: 136 IRKTLNAGAYNKAIQERLVQAEYWHDPIREDIYRNHSIFLADINQE--RGVNESYKKNLM 193
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYYPDGAFSPVLPPQKVS 162
+L+ V++ F +D ++ P ++ WFG+Y G +P Q+ +
Sbjct: 194 ALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPLQEST 235
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 1 MKELSEGYNIVGLSQGNLIGRGVVEFCEGGPPVKNFVSLGGPHAGTASVPLCGSGIFCII 60
M + +G +++ SQG L+ R ++ + V +F+SL P G +F
Sbjct: 98 MAKAPQGVHLICYSQGGLVCRALLSVMDDHN-VDSFISLSSPQMGQYGDTDYLKWLFPTS 156
Query: 61 ANNLIKAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFS 120
+ + YS + Q+ + Y P+ YL FL +N E + +++ F
Sbjct: 157 MRSNLYRICYSPWGQE-FSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFL 215
Query: 121 SLQNLVLIMFKDDKVLIPKETAWFGYY 147
+ +LVLI DD V+ P ++++FG+Y
Sbjct: 216 RVGHLVLIGGPDDGVITPWQSSFFGFY 242
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 SLGGPHAGTASVPLCGSGIFCIIANNLIKAEV-YSDYVQDHLAPSGYL 84
++ P A++ LC +GIF + NNL+ A+V + + H P+ Y+
Sbjct: 229 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 276
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 SLGGPHAGTASVPLCGSGIFCIIANNLIKAEV-YSDYVQDHLAPSGYL 84
++ P A++ LC +GIF + NNL+ A+V + + H P+ Y+
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI 280
>pdb|1XRS|A Chain A, Crystal Structure Of Lysine 5,6-Aminomutase In Complex
With Plp, Cobalamin, And 5'-Deoxyadenosine
Length = 516
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 156 LPPQK-VSDNAFPYHMRDSVFNTILDLLHKTSCLVVKYEEGLSYPFM 201
+PP K ++ N F H++D++FN + + ++ L+ E L PFM
Sbjct: 372 MPPTKFMTGNIFKGHIQDALFNMVTIMTNQRIHLLGMLTEALHTPFM 418
>pdb|1YNM|A Chain A, Crystal Structure Of Restriction Endonuclease Hinp1i
pdb|2FKC|A Chain A, Crystal Form I Of Pre-Reactive Complex Of Restriction
Endonuclease Hinp1i With Cognate Dna And Calcium Ion
pdb|2FKC|B Chain B, Crystal Form I Of Pre-Reactive Complex Of Restriction
Endonuclease Hinp1i With Cognate Dna And Calcium Ion
pdb|2FKH|B Chain B, Crystal Form Ii Of Pre-Reactive Complex Of Restriction
Endonuclease Hinp1i With Cognate Dna And Calcium Ions
pdb|2FL3|A Chain A, Binary Complex Of Restriction Endonuclease Hinp1i With
Cognate Dna
pdb|2FLC|A Chain A, Post-Reactive Complex Of Restriction Endonuclease Hinp1i
With Nicked Cognate Dna And Magnesium Ions
Length = 247
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 85 KFPNDIPKYLEK-CKFLPKLNNELPDKRNSTYKECFSSLQNLVLIMFKDDKVLIPKETAW 143
KF +++ + L LP ++ DKR E QN+VL + ++VL+ +
Sbjct: 107 KFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDI-- 164
Query: 144 FGYYPDGAFSPVLPPQKVSDNA 165
D A VL QKVS+NA
Sbjct: 165 LRGRGDFAAEWVLVAQKVSNNA 186
>pdb|4H6D|F Chain F, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|A Chain A, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|B Chain B, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|C Chain C, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|D Chain D, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|E Chain E, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|G Chain G, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
pdb|4H6D|H Chain H, Crystal Structure Of Plp-soaked Hmp Synthase Thi5 From S.
Cerevisiae
Length = 346
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 90 IPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNLVLIMFKDDKVLIPKETAWFGYYPD 149
+ + E F P+LNN+L K+ Y+ C++ + + + +D K + GY
Sbjct: 236 VKAWKEYIDFKPQLNNDLSYKQ---YQRCYAYFSSSLYNVHRDWKKVT-------GY--- 282
Query: 150 GAFSPVLPPQKVSD--NAF-----PYHMRDSVFNTILDLLHKTSC 187
G +LPP VS+ N + P + D + T L +H+ C
Sbjct: 283 GKRLAILPPDYVSNYTNEYLSWPEPEEVSDPLEATRLMAIHQEKC 327
>pdb|2GQ1|A Chain A, Crystal Structure Of Recombinant Type I
Fructose-1,6-Bisphosphatase From Escherichia Coli
Complexed With Sulfate Ions
pdb|2OWZ|A Chain A, R-state, Citrate And Fru-6-p-bound Escherichia Coli
Fructose-1,6- Bisphosphatase
pdb|2OX3|A Chain A, R-State, Pep And Fru-6-P-Bound, Escherichia Coli
Fructose-1, 6-Bisphosphatase
pdb|2Q8M|A Chain A, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2Q8M|B Chain B, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2QVR|A Chain A, E. Coli Fructose-1,6-Bisphosphatase: Citrate, Fru-2,6-P2,
And Mg2+ Bound
Length = 332
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 41 GPHAGTASVPLCGSGIFCIIANNLI---KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKC 97
G HA T L G+FC+ K + YS + Y+KFPN + KY++ C
Sbjct: 174 GVHAFTYDPSL---GVFCLCQERXRFPEKGKTYS------INEGNYIKFPNGVKKYIKFC 224
Query: 98 KFLPKLNN 105
+ K N
Sbjct: 225 QEEDKSTN 232
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNL 125
+ YSD +++ L P GY L K K P N D +N F ++
Sbjct: 144 RGXAYSDLIKNDLEPKGYYS--------LSKVKLYPTYNETXADLKNGNLDLAF--IEEP 193
Query: 126 VLIMFKDDK 134
V FK+ K
Sbjct: 194 VYFTFKNKK 202
>pdb|2WZR|1 Chain 1, The Structure Of Foot And Mouth Disease Virus Serotype
Sat1
Length = 219
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 88 NDIPKYLEKCKFLPKLNNE--LPDKRNSTYKECFSSLQNLVLIMFKDDKVLIPKETAWFG 145
D+ L++ + K N+ + D ++ K +L F D +V AW G
Sbjct: 30 TDVTFLLDRFTLVGKTNDNKLVLDLLSTKEKSLVGALLRAATYYFSDLEVACVGTNAWVG 89
Query: 146 YYPDGAFSPVLPPQKVSDNAFPYHMRDSV 174
+ P+G SPVL +V DN + R +
Sbjct: 90 WTPNG--SPVL--TEVGDNPVVFSRRGTT 114
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 66 KAEVYSDYVQDHLAPSGYLKFPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSSLQNL 125
+ YSD +++ L P GY L K K P N D +N F ++
Sbjct: 124 RGXAYSDLIKNDLEPKGYYS--------LSKVKLYPTYNETXADLKNGNLDLAF--IEEP 173
Query: 126 VLIMFKDDK 134
V FK+ K
Sbjct: 174 VYFTFKNKK 182
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 83 YLK-FPNDIPKYLEKCKFLPKLNNELPDKRNSTYKECFSS 121
+LK FPN K LEK K K+ N+L +K YKE F S
Sbjct: 202 WLKIFPN---KTLEKLKSHVKIRNDLLNKILENYKEKFRS 238
>pdb|3MU7|A Chain A, Crystal Structure Of The Xylanase And Alpha-Amylase
Inhibitor Protein (Xaip-Ii) From Scadoxus Multiflorus At
1.2 A Resolution
Length = 273
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 117 ECFSSLQNLVLIM--FKDDKVLIPKETAWFGY--YPDGAFSPVLPPQKVSDNAFPYHMRD 172
+C S N +M +K+ + + + G+ +PD A S +PP KV + FP
Sbjct: 186 QCSYSASNASALMNAWKEWSMKARTDKVFLGFPAHPDAAGSGYMPPTKVKFSVFPNAQDS 245
Query: 173 SVFNTIL 179
+ F I+
Sbjct: 246 TKFGGIM 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,362,512
Number of Sequences: 62578
Number of extensions: 321341
Number of successful extensions: 665
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 18
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)