Query 027693
Match_columns 220
No_of_seqs 64 out of 66
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 23:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 43.6 43 0.0015 30.1 6.0 67 91-167 16-82 (301)
2 2jwa_A Receptor tyrosine-prote 35.7 57 0.0019 21.8 4.3 18 133-150 21-38 (44)
3 4b4a_A TATC, SEC-independent p 32.1 23 0.00079 29.9 2.3 59 121-179 105-168 (249)
4 3rlf_F Maltose transport syste 31.0 47 0.0016 30.4 4.3 51 133-183 44-95 (514)
5 4dkl_A MU-type opioid receptor 28.5 1.1E+02 0.0037 24.5 5.6 49 117-167 50-98 (464)
6 2yev_B Cytochrome C oxidase su 31.7 15 0.0005 31.8 0.0 84 92-176 6-106 (337)
7 4ea3_A Fusion protein of nocic 24.3 1.7E+02 0.0059 23.8 6.2 51 117-169 158-208 (434)
8 3rze_A Histamine H1 receptor, 23.0 1.3E+02 0.0046 23.9 5.2 52 117-169 41-92 (452)
9 3odu_A C-X-C chemokine recepto 20.7 1.7E+02 0.0058 23.8 5.4 51 117-170 81-131 (502)
10 4hg6_A Cellulose synthase subu 18.7 4.9E+02 0.017 24.5 8.7 51 141-191 75-132 (802)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=43.56 E-value=43 Score=30.15 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 027693 91 SLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVF 167 (220)
Q Consensus 91 ~lalq~Ga~llA~~e~PAlAvtg~~n~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF 167 (220)
-++.|+||++|+.-=..+=-...| ||+|....+.-.+++.+ .-.++.+-++ |....+=|.++++.++
T Consensus 16 ~l~vql~AL~L~~p~~~~g~~afe--dP~~~sNs~~YI~~ILv-----fT~~mL~l~k---~~~~~ii~~ii~~~i~ 82 (301)
T 4hyg_A 16 LLFVQIIAIVLVMPMQAAGLVAFE--NPSSVANPLIFIGMLLA-----FTLVLLVLLR---TGGRRFIAAFIGFALF 82 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----CCCTHHHHHHHHHHHH-----HHHHHHHHHH---TCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhcCceeec--CCcchhHHHHHHHHHHH-----HHHHHHHHHH---hchHHHHHHHHHHHHH
Confidence 467899999975433332223445 77887766544433322 2222222223 3444455666555444
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=35.75 E-value=57 Score=21.81 Aligned_cols=18 Identities=6% Similarity=0.187 Sum_probs=13.1
Q ss_pred HHHHHhHhHHHHHHHHHH
Q 027693 133 FWYFLIMPPIIMNWLRVR 150 (220)
Q Consensus 133 ~~YLLVvP~~ly~wln~R 150 (220)
.+-++++=+++.+|+++|
T Consensus 21 vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheehh
Confidence 445666677788888887
No 3
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=32.13 E-value=23 Score=29.88 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHH---HHhhh--hHHHHHHHHHHHHhhhhhHhhhhc
Q 027693 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVR---WYKRK--LFEMYVQFMFVFMFFPGLLLWAPF 179 (220)
Q Consensus 121 ~l~Vll~Y~~La~~YLLVvP~~ly~wln~R---Wy~~~--~~ER~~mY~LVF~FFPGllL~APF 179 (220)
...+++-++++++.|++|+|.++-+-++-- =..+- +++.|+.+.+.+++.=|+..--|.
T Consensus 105 ~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPv 168 (249)
T 4b4a_A 105 LGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPI 168 (249)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788899999999999987665421 11123 788999988888887777665554
No 4
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=30.98 E-value=47 Score=30.41 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=37.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhHhh-hhccCcc
Q 027693 133 FWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLW-APFLNFR 183 (220)
Q Consensus 133 ~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~FFPGllL~-APFLNFR 183 (220)
.+-+++.=++.|.|.++|-|-..-+==...++++|..||-+--. --|-|+-
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~t~~~~ftny~ 95 (514)
T 3rlf_F 44 ITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYS 95 (514)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTHHHHHHHHHHHHHHTHHHHHHHHHHTTBCCS
T ss_pred HHHHHHHHHHeEEEECCCcccHHHHHHHHHHHHHHHHHHHHheEeeeeeccC
Confidence 33444555677888899999999888889999999999966433 3466653
No 5
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=28.54 E-value=1.1e+02 Score=24.47 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 027693 117 HEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVF 167 (220)
Q Consensus 117 ~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF 167 (220)
++-+.+++-++.+= .++.+++|..+..++..+|.....+-++..|+..+
T Consensus 50 ~~~~~~l~~La~~D--ll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~ 98 (464)
T 4dkl_A 50 TATNIYIFNLALAD--ALATSTLPFQSVNYLMGTWPFGNILCKIVISIDYY 98 (464)
T ss_dssp SHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCcccccchhhhHHHHHHH
Confidence 34555544444333 34556689999999988997665555555544433
No 6
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=31.65 E-value=15 Score=31.78 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHhhcCC--ceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-----------HHhhhhHH
Q 027693 92 LGIQAGAVLLATLEQP--ALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVR-----------WYKRKLFE 158 (220)
Q Consensus 92 lalq~Ga~llA~~e~P--AlAvtg~~n~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~R-----------Wy~~~~~E 158 (220)
+++-+.+++|+-.+.+ .+--.|...+.+|.|.....++++. +.++|+=+++|+-.+-| +.....+|
T Consensus 6 ~~~~~~~~~l~gc~~~~~~ld~~~~~~~~~~~l~~~~~~~~~~-i~~~V~~~~~~~~~~~r~~~~~~~~~~~~~~~~~lE 84 (337)
T 2yev_B 6 AALGLWGLSLAQEAHRVAITHPGGSFNQEVAFLFPWVYFFSFL-IFLVVAGSLAYVTWKFRARPEDQEEPPQIHGNDRLE 84 (337)
Confidence 3333444454544332 2323344345566555554444333 33344434444333321 22233566
Q ss_pred HHH----HHHHHHHhhhhhHhh
Q 027693 159 MYV----QFMFVFMFFPGLLLW 176 (220)
Q Consensus 159 R~~----mY~LVF~FFPGllL~ 176 (220)
... +..++++++|++-++
T Consensus 85 ~~wt~~P~~il~~l~~~s~~~~ 106 (337)
T 2yev_B 85 VVWTLIPLAIVFVLFGLTAKAL 106 (337)
Confidence 543 345667777776554
No 7
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=24.30 E-value=1.7e+02 Score=23.85 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 027693 117 HEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMF 169 (220)
Q Consensus 117 ~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~F 169 (220)
++-+.+++-+...=+ ++++++|..+...+...|.....+=++..|+..++.
T Consensus 158 ~~~~~ll~~LAvsDl--l~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 208 (434)
T 4ea3_A 158 TATNIYIFNLALADT--LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNM 208 (434)
T ss_dssp CHHHHHHHHHHHHHH--HHHTTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH--HHHHHhHHHHHHHHhcCCcCcccHHHHHHHHHHHHH
Confidence 355555554444443 347889999998888889877666666655554443
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=23.04 E-value=1.3e+02 Score=23.90 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q 027693 117 HEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMF 169 (220)
Q Consensus 117 ~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~F 169 (220)
++-+.+++-++.+=+... ++++|..++..+..+|.....+-++..|+..++.
T Consensus 41 ~~~~~~l~~La~~Dll~~-~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 92 (452)
T 3rze_A 41 TVGNLYIVSLSVADLIVG-AVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVAS 92 (452)
T ss_dssp CGGGHHHHHHHHHHHHHH-HTHHHHHHHHHHSSSCSSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccCCchhHhHHHHHHHHHH
Confidence 455555544433322221 4678888888888889877666666655544443
No 9
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=20.67 E-value=1.7e+02 Score=23.79 Aligned_cols=51 Identities=12% Similarity=0.290 Sum_probs=28.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 027693 117 HEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFF 170 (220)
Q Consensus 117 ~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~FF 170 (220)
++-+.+++-++.+=+ ++++++|..++..+. .|.....+=++..|+..++.+
T Consensus 81 ~~~~~~l~~La~~Dl--l~~~~~p~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~ 131 (502)
T 3odu_A 81 SMTDKYRLHLSVADL--LFVITLPFWAVDAVA-NWYFGNFLCKAVHVIYTVNLY 131 (502)
T ss_dssp CHHHHHHHHHHHHHH--HHHTTHHHHHHHHHT-CCCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc-CCcCCchhhhhHHHHHHHHHH
Confidence 345555444433333 345788888877665 687766655555444444333
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=18.69 E-value=4.9e+02 Score=24.52 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHh-----hhhHHHHHHHHHHHHhhh--hhHhhhhccCcccCCCCCCC
Q 027693 141 PIIMNWLRVRWYK-----RKLFEMYVQFMFVFMFFP--GLLLWAPFLNFRKLPRDPSM 191 (220)
Q Consensus 141 ~~ly~wln~RWy~-----~~~~ER~~mY~LVF~FFP--GllL~APFLNFR~~pR~psm 191 (220)
.+...|+..||.. .+.++-.+...+++...- ...++.-|.+.|+.+|.+..
T Consensus 75 ~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~ 132 (802)
T 4hg6_A 75 MLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPR 132 (802)
T ss_dssp HHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 4455677777653 223444443333332222 22344566677777776543
Done!