Query 027693
Match_columns 220
No_of_seqs 64 out of 66
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 23:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027693.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027693hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 39.4 9.2 0.00067 30.6 3.0 49 134-182 33-82 (248)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 18.5 1.3E+02 0.0097 20.2 5.8 48 129-176 40-100 (107)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 16.8 45 0.0033 19.5 2.4 24 162-187 5-28 (30)
4 d1ppjd2 f.23.11.1 (D:196-241) 11.6 1.3E+02 0.0096 18.4 3.7 25 129-153 10-34 (46)
5 d1oede_ f.36.1.1 (E:) Acetylch 10.3 73 0.0053 23.1 2.5 17 153-169 225-241 (260)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 9.4 2.4E+02 0.018 18.3 5.7 47 130-176 35-94 (100)
7 d3cx5h1 f.23.13.1 (H:2-94) Ubi 8.3 1.1E+02 0.0077 21.5 2.5 16 136-151 56-71 (93)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.2 3.3E+02 0.024 18.9 6.7 39 136-174 88-126 (348)
9 d1wy7a1 c.66.1.32 (A:4-204) Hy 7.6 46 0.0034 24.2 0.3 54 65-118 26-79 (201)
10 d1ppjg_ f.23.13.1 (G:) Ubiquin 7.2 1.3E+02 0.0095 20.1 2.5 19 136-154 46-64 (75)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=39.35 E-value=9.2 Score=30.62 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhHhh-hhccCc
Q 027693 134 WYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLW-APFLNF 182 (220)
Q Consensus 134 ~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~FFPGllL~-APFLNF 182 (220)
+-+++.=++.|.|+++|=|-+.-+==.+++|++|..||-+--. --|-|+
T Consensus 33 ~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy 82 (248)
T d2r6gf1 33 TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNY 82 (248)
T ss_dssp HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCC
T ss_pred HHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEEc
Confidence 3344455667889999999999999999999999999976432 345555
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=18.47 E-value=1.3e+02 Score=20.15 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHH---------hhhhHHHHH----HHHHHHHhhhhhHhh
Q 027693 129 GIIAFWYFLIMPPIIMNWLRVRWY---------KRKLFEMYV----QFMFVFMFFPGLLLW 176 (220)
Q Consensus 129 ~~La~~YLLVvP~~ly~wln~RWy---------~~~~~ER~~----mY~LVF~FFPGllL~ 176 (220)
.++.+..++|.-+++|...+-|=. -...+|..- +..|+++++|++-++
T Consensus 40 ~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~L 100 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPIL 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666654411 113478765 478899999998654
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.81 E-value=45 Score=19.52 Aligned_cols=24 Identities=38% Similarity=0.867 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhHhhhhccCcccCCC
Q 027693 162 QFMFVFMFFPGLLLWAPFLNFRKLPR 187 (220)
Q Consensus 162 mY~LVF~FFPGllL~APFLNFR~~pR 187 (220)
.|.++|-..=|+.++|=| ||--||
T Consensus 5 ~yv~ifac~i~lfffaif--freppr 28 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIF--FREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH--TSCCCC
T ss_pred ehHHHHHHHHHHHHHHHH--hcCCCC
Confidence 355555555666666655 455554
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.56 E-value=1.3e+02 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHh
Q 027693 129 GIIAFWYFLIMPPIIMNWLRVRWYK 153 (220)
Q Consensus 129 ~~La~~YLLVvP~~ly~wln~RWy~ 153 (220)
|+=+.++|.++=++.|++-+..|-.
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344556666777788888888854
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.26 E-value=73 Score=23.11 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHh
Q 027693 153 KRKLFEMYVQFMFVFMF 169 (220)
Q Consensus 153 ~~~~~ER~~mY~LVF~F 169 (220)
++..++|++++.++..|
T Consensus 225 vA~viDR~~l~vF~~~~ 241 (260)
T d1oede_ 225 IGKVIDKACFWIALLLF 241 (260)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45568888776555444
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.41 E-value=2.4e+02 Score=18.32 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=29.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHh---------hhhHHHHHH----HHHHHHhhhhhHhh
Q 027693 130 IIAFWYFLIMPPIIMNWLRVRWYK---------RKLFEMYVQ----FMFVFMFFPGLLLW 176 (220)
Q Consensus 130 ~La~~YLLVvP~~ly~wln~RWy~---------~~~~ER~~m----Y~LVF~FFPGllL~ 176 (220)
++++..++|.=.++|+-.+.|..+ ...+|..-- ..|+++++|++-++
T Consensus 35 i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lILi~l~~pS~~~l 94 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVL 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666667666666332 135887653 56788888887554
No 7
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.27 E-value=1.1e+02 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=11.3
Q ss_pred HHhHhHHHHHHHHHHH
Q 027693 136 FLIMPPIIMNWLRVRW 151 (220)
Q Consensus 136 LLVvP~~ly~wln~RW 151 (220)
|.|+|+++..|+.--|
T Consensus 56 lyv~PPfi~~Y~iy~W 71 (93)
T d3cx5h1 56 LYVLIPAGIYWYWWKN 71 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEcchHHHHHHHHHH
Confidence 3467777777777777
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.18 E-value=3.3e+02 Score=18.92 Aligned_cols=39 Identities=10% Similarity=-0.181 Sum_probs=24.7
Q ss_pred HHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhH
Q 027693 136 FLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLL 174 (220)
Q Consensus 136 LLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~FFPGll 174 (220)
++.+|..++..+...|......=+...|+.+++.+=++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~ 126 (348)
T d1u19a_ 88 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126 (348)
T ss_dssp HHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccCccccCchhhhhhhhccccceeeecc
Confidence 455677788888887876655555555555555554443
No 9
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.62 E-value=46 Score=24.22 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=29.8
Q ss_pred CCcccchhhhhcccccccCcccccchhhhhhHHHHHHHhhcCCceeeecccCCc
Q 027693 65 TKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHE 118 (220)
Q Consensus 65 ~t~~kl~~~i~~~~~k~~d~~~~kk~~lalq~Ga~llA~~e~PAlAvtg~~n~~ 118 (220)
.|++.+...+--+....+|.-+.+=.-+..-.|++-++++...|--|||++.++
T Consensus 26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~ 79 (201)
T d1wy7a1 26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK 79 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH
Confidence 355444333222223344444444445555667777677778777799985554
No 10
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.23 E-value=1.3e+02 Score=20.13 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=13.8
Q ss_pred HHhHhHHHHHHHHHHHHhh
Q 027693 136 FLIMPPIIMNWLRVRWYKR 154 (220)
Q Consensus 136 LLVvP~~ly~wln~RWy~~ 154 (220)
|.|+|+++..|+---|-..
T Consensus 46 l~v~PPfi~~Y~iy~W~~~ 64 (75)
T d1ppjg_ 46 LRVAPPFVAFYLVYTWGTQ 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eEEcCHHHHHHHHHHHHHH
Confidence 4568888888887777554
Done!