Query 027695
Match_columns 220
No_of_seqs 106 out of 426
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 13:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 2.1E-59 4.4E-64 416.5 18.4 209 1-209 97-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 2.7E-53 5.9E-58 381.1 22.1 214 1-214 111-327 (328)
3 PF08443 RimK: RimK-like ATP-g 99.9 4.6E-26 1E-30 189.9 13.6 158 13-199 12-177 (190)
4 PF07478 Dala_Dala_lig_C: D-al 99.9 1.1E-23 2.4E-28 178.0 9.5 167 14-202 4-186 (203)
5 PRK10446 ribosomal protein S6 99.9 2.4E-22 5.2E-27 178.1 16.8 175 12-215 107-294 (300)
6 COG0189 RimK Glutathione synth 99.9 2.4E-22 5.2E-27 180.5 16.3 172 13-213 128-317 (318)
7 TIGR02144 LysX_arch Lysine bio 99.9 1.1E-21 2.5E-26 170.8 16.8 168 13-212 96-280 (280)
8 TIGR00768 rimK_fam alpha-L-glu 99.8 3.4E-20 7.5E-25 160.3 16.0 155 13-197 97-262 (277)
9 PRK14570 D-alanyl-alanine synt 99.8 1.2E-19 2.5E-24 165.8 16.3 170 13-200 138-325 (364)
10 PRK14569 D-alanyl-alanine synt 99.8 5.7E-19 1.2E-23 156.6 15.2 160 12-200 106-274 (296)
11 TIGR01205 D_ala_D_alaTIGR D-al 99.8 2.4E-18 5.2E-23 152.4 18.6 165 12-198 113-292 (315)
12 PRK01372 ddl D-alanine--D-alan 99.8 2.4E-18 5.1E-23 151.9 17.8 162 13-199 107-278 (304)
13 PRK01966 ddl D-alanyl-alanine 99.8 1.2E-18 2.6E-23 156.9 15.7 167 13-200 132-310 (333)
14 TIGR03103 trio_acet_GNAT GNAT- 99.8 3.6E-18 7.7E-23 163.4 19.1 184 13-207 306-540 (547)
15 PRK14572 D-alanyl-alanine synt 99.8 1.2E-18 2.7E-23 157.7 14.5 170 12-200 138-324 (347)
16 PRK14568 vanB D-alanine--D-lac 99.8 2.2E-18 4.7E-23 155.8 15.3 164 12-200 140-319 (343)
17 PRK14571 D-alanyl-alanine synt 99.8 1.1E-17 2.4E-22 148.0 18.3 155 16-200 106-274 (299)
18 PRK14016 cyanophycin synthetas 99.8 8E-18 1.7E-22 165.6 15.3 175 12-196 222-452 (727)
19 TIGR02291 rimK_rel_E_lig alpha 99.7 8.7E-17 1.9E-21 144.3 17.8 174 12-194 45-273 (317)
20 COG1181 DdlA D-alanine-D-alani 99.7 7.5E-17 1.6E-21 144.9 14.9 172 13-201 112-296 (317)
21 PRK02471 bifunctional glutamat 99.7 1.5E-16 3.2E-21 157.0 17.6 174 12-194 496-729 (752)
22 TIGR01380 glut_syn glutathione 99.7 1.5E-16 3.2E-21 142.4 14.1 156 18-209 133-310 (312)
23 PRK14573 bifunctional D-alanyl 99.7 2.3E-16 5.1E-21 156.8 16.8 172 13-200 577-765 (809)
24 TIGR02068 cya_phycin_syn cyano 99.7 2.3E-16 5E-21 157.9 16.7 175 12-196 221-451 (864)
25 PRK12458 glutathione synthetas 99.7 3.5E-16 7.6E-21 141.6 15.6 163 17-213 139-327 (338)
26 TIGR01435 glu_cys_lig_rel glut 99.7 4.7E-16 1E-20 152.4 16.3 173 12-194 483-715 (737)
27 PRK05246 glutathione synthetas 99.7 2.4E-16 5.2E-21 141.1 13.0 159 18-212 134-314 (316)
28 PF13535 ATP-grasp_4: ATP-gras 99.6 5.5E-15 1.2E-19 119.8 13.5 152 14-192 14-180 (184)
29 TIGR01142 purT phosphoribosylg 99.6 1.8E-14 3.8E-19 130.9 13.8 156 13-199 110-280 (380)
30 TIGR01161 purK phosphoribosyla 99.6 3.2E-14 6.8E-19 128.6 13.9 154 13-195 107-269 (352)
31 PRK06019 phosphoribosylaminoim 99.6 3.8E-14 8.2E-19 129.5 13.2 155 13-196 109-272 (372)
32 PLN02948 phosphoribosylaminoim 99.5 1.6E-13 3.4E-18 132.2 14.9 155 13-196 130-295 (577)
33 PRK12767 carbamoyl phosphate s 99.5 7.3E-13 1.6E-17 117.7 14.3 144 13-192 120-271 (326)
34 PRK06524 biotin carboxylase-li 99.4 1.7E-12 3.8E-17 122.3 14.7 159 13-193 151-325 (493)
35 PRK05586 biotin carboxylase; V 99.4 1E-12 2.2E-17 122.7 13.1 154 13-194 124-296 (447)
36 PRK09288 purT phosphoribosylgl 99.4 1.4E-12 3E-17 119.1 13.4 155 14-199 124-293 (395)
37 PRK12833 acetyl-CoA carboxylas 99.4 1.4E-12 3.1E-17 122.5 12.8 152 13-193 127-298 (467)
38 PF02655 ATP-grasp_3: ATP-gras 99.4 1.3E-12 2.7E-17 106.4 10.5 141 13-192 12-159 (161)
39 PRK06849 hypothetical protein; 99.4 5.5E-12 1.2E-16 115.5 15.8 145 13-192 125-277 (389)
40 PRK08462 biotin carboxylase; V 99.4 9.7E-12 2.1E-16 115.8 14.4 151 13-193 126-297 (445)
41 PRK13790 phosphoribosylamine-- 99.4 1.6E-11 3.5E-16 112.7 15.1 158 12-193 75-252 (379)
42 PRK08654 pyruvate carboxylase 99.4 8.7E-12 1.9E-16 118.4 12.9 152 13-194 124-295 (499)
43 PLN02735 carbamoyl-phosphate s 99.4 9.5E-12 2.1E-16 127.5 14.0 153 13-192 711-877 (1102)
44 TIGR01369 CPSaseII_lrg carbamo 99.3 1.3E-11 2.9E-16 126.1 14.9 151 13-192 678-842 (1050)
45 PRK07206 hypothetical protein; 99.3 2.9E-11 6.4E-16 111.2 15.4 156 13-198 117-295 (416)
46 PRK08463 acetyl-CoA carboxylas 99.3 2.7E-11 5.9E-16 114.3 14.6 153 13-194 123-296 (478)
47 TIGR00514 accC acetyl-CoA carb 99.3 2E-11 4.4E-16 114.0 13.5 152 13-194 124-296 (449)
48 PRK05294 carB carbamoyl phosph 99.3 2.4E-11 5.1E-16 124.4 15.0 150 13-192 678-842 (1066)
49 PRK07178 pyruvate carboxylase 99.3 2.4E-11 5.3E-16 114.4 14.0 152 13-193 123-294 (472)
50 PRK08591 acetyl-CoA carboxylas 99.3 2.1E-11 4.6E-16 113.5 13.3 154 13-194 124-296 (451)
51 PRK02186 argininosuccinate lya 99.3 2.6E-11 5.7E-16 122.0 14.5 150 13-193 116-279 (887)
52 PLN02257 phosphoribosylamine-- 99.3 4.6E-11 9.9E-16 111.7 14.2 176 13-212 111-315 (434)
53 TIGR01235 pyruv_carbox pyruvat 99.3 2.6E-11 5.5E-16 124.4 13.1 152 13-193 124-295 (1143)
54 PRK12815 carB carbamoyl phosph 99.3 4.7E-11 1E-15 122.3 14.1 150 13-192 679-840 (1068)
55 PF02786 CPSase_L_D2: Carbamoy 99.3 1.6E-11 3.4E-16 104.6 8.8 151 14-192 11-181 (211)
56 PLN02735 carbamoyl-phosphate s 99.3 6.3E-11 1.4E-15 121.6 14.6 154 13-192 153-322 (1102)
57 PRK06111 acetyl-CoA carboxylas 99.3 8E-11 1.7E-15 109.4 13.3 154 13-193 124-295 (450)
58 PF02222 ATP-grasp: ATP-grasp 99.3 3E-11 6.4E-16 100.0 9.1 154 14-195 3-165 (172)
59 PRK13789 phosphoribosylamine-- 99.2 9.9E-11 2.1E-15 109.2 12.9 155 13-193 117-297 (426)
60 PRK00885 phosphoribosylamine-- 99.2 1.8E-10 3.9E-15 106.6 14.3 77 13-97 111-200 (420)
61 TIGR01369 CPSaseII_lrg carbamo 99.2 2.3E-10 4.9E-15 117.2 13.9 156 13-194 136-305 (1050)
62 PRK05294 carB carbamoyl phosph 99.2 2.4E-10 5.2E-15 117.1 13.9 155 13-193 137-306 (1066)
63 PRK12999 pyruvate carboxylase; 99.2 3.1E-10 6.6E-15 116.8 13.4 151 13-193 128-299 (1146)
64 TIGR02712 urea_carbox urea car 99.1 8.6E-10 1.9E-14 114.0 14.9 152 13-193 123-294 (1201)
65 PF02955 GSH-S_ATP: Prokaryoti 99.1 5.4E-10 1.2E-14 92.6 10.4 137 19-190 12-161 (173)
66 TIGR00877 purD phosphoribosyla 99.1 7.6E-10 1.7E-14 102.2 12.5 157 13-196 113-295 (423)
67 PRK12815 carB carbamoyl phosph 99.1 1.1E-09 2.4E-14 112.3 14.1 154 13-192 137-304 (1068)
68 COG0439 AccC Biotin carboxylas 99.1 1.6E-09 3.4E-14 101.6 12.3 151 13-192 124-294 (449)
69 PF02750 Synapsin_C: Synapsin, 99.0 1.3E-08 2.7E-13 85.4 13.1 121 41-190 49-177 (203)
70 PF15632 ATPgrasp_Ter: ATP-gra 99.0 9.9E-09 2.2E-13 92.9 13.2 136 14-192 117-282 (329)
71 PRK06395 phosphoribosylamine-- 98.9 4E-08 8.7E-13 92.0 14.7 155 13-192 114-294 (435)
72 COG0458 CarB Carbamoylphosphat 98.8 5.6E-08 1.2E-12 89.4 13.2 152 14-192 126-291 (400)
73 PRK13277 5-formaminoimidazole- 98.7 1.9E-07 4.1E-12 85.4 13.4 153 13-192 135-320 (366)
74 PRK13278 purP 5-formaminoimida 98.7 2E-07 4.4E-12 85.3 13.6 160 12-200 131-326 (358)
75 COG3919 Predicted ATP-grasp en 98.7 5E-08 1.1E-12 86.7 8.5 148 15-192 125-289 (415)
76 KOG1057 Arp2/3 complex-interac 98.7 3.1E-08 6.7E-13 96.5 6.6 161 13-201 139-333 (1018)
77 PRK05784 phosphoribosylamine-- 98.7 7.5E-07 1.6E-11 84.6 15.6 76 13-97 118-217 (486)
78 COG0027 PurT Formate-dependent 98.7 2E-07 4.3E-12 83.4 10.7 152 15-198 125-292 (394)
79 KOG0238 3-Methylcrotonyl-CoA c 98.7 1.5E-07 3.2E-12 88.6 10.1 127 37-190 143-288 (670)
80 COG2232 Predicted ATP-dependen 98.6 3E-07 6.5E-12 82.7 10.4 120 42-191 149-274 (389)
81 PF03133 TTL: Tubulin-tyrosine 98.6 1.4E-06 3E-11 76.9 14.3 50 43-95 66-125 (292)
82 PF01071 GARS_A: Phosphoribosy 98.6 2E-07 4.3E-12 78.6 7.6 79 14-100 12-106 (194)
83 PF14397 ATPgrasp_ST: Sugar-tr 98.5 1.1E-05 2.5E-10 71.6 18.7 192 13-211 35-280 (285)
84 COG1038 PycA Pyruvate carboxyl 98.5 5.4E-07 1.2E-11 88.6 10.7 125 38-189 154-297 (1149)
85 COG1821 Predicted ATP-utilizin 98.5 1.2E-07 2.5E-12 82.7 5.5 114 45-192 141-257 (307)
86 COG4770 Acetyl/propionyl-CoA c 98.4 9.3E-07 2E-11 84.2 9.5 126 38-190 148-292 (645)
87 COG0026 PurK Phosphoribosylami 98.4 1.2E-05 2.5E-10 73.6 15.1 171 12-211 107-291 (375)
88 PF14398 ATPgrasp_YheCD: YheC/ 98.4 8.5E-06 1.8E-10 71.5 12.9 159 19-199 36-241 (262)
89 KOG0369 Pyruvate carboxylase [ 98.2 1.1E-05 2.5E-10 78.3 9.8 125 39-190 181-324 (1176)
90 COG0151 PurD Phosphoribosylami 98.0 9.3E-05 2E-09 68.7 12.5 179 13-213 112-315 (428)
91 PF14305 ATPgrasp_TupA: TupA-l 97.7 0.0057 1.2E-07 53.1 17.7 160 18-201 36-228 (239)
92 TIGR01016 sucCoAbeta succinyl- 97.6 7.6E-05 1.6E-09 68.8 4.8 82 12-98 12-116 (386)
93 KOG3895 Synaptic vesicle prote 97.4 0.00016 3.4E-09 65.9 4.7 120 41-189 238-365 (488)
94 PRK00696 sucC succinyl-CoA syn 97.2 0.00044 9.6E-09 63.7 5.3 85 12-100 12-118 (388)
95 KOG2156 Tubulin-tyrosine ligas 97.1 0.0015 3.2E-08 62.3 7.6 73 18-95 282-360 (662)
96 KOG0370 Multifunctional pyrimi 97.0 0.0013 2.8E-08 66.3 6.5 149 14-189 1043-1203(1435)
97 KOG0368 Acetyl-CoA carboxylase 96.8 0.0049 1.1E-07 64.7 8.9 132 38-190 235-376 (2196)
98 PF14243 DUF4343: Domain of un 96.6 0.11 2.3E-06 41.1 13.2 110 43-192 2-117 (130)
99 PF13549 ATP-grasp_5: ATP-gras 95.0 0.0096 2.1E-07 51.3 1.1 83 12-98 19-121 (222)
100 PF07065 D123: D123; InterPro 95.0 0.12 2.7E-06 46.4 8.1 92 76-196 151-244 (299)
101 KOG2157 Predicted tubulin-tyro 93.3 0.085 1.8E-06 50.6 3.8 57 38-97 195-269 (497)
102 PRK14046 malate--CoA ligase su 92.7 0.23 4.9E-06 46.2 5.6 84 12-99 12-117 (392)
103 PF08442 ATP-grasp_2: ATP-gras 92.4 0.21 4.6E-06 42.4 4.6 79 12-94 11-111 (202)
104 KOG2158 Tubulin-tyrosine ligas 87.0 0.18 4E-06 47.8 -0.1 52 40-95 224-282 (565)
105 KOG0237 Glycinamide ribonucleo 84.2 14 0.00031 36.5 11.1 79 13-98 117-208 (788)
106 PLN02235 ATP citrate (pro-S)-l 84.1 2.7 5.8E-05 39.7 6.1 82 14-97 22-124 (423)
107 COG0045 SucC Succinyl-CoA synt 82.7 2.5 5.4E-05 39.3 5.2 84 12-98 12-114 (387)
108 PHA02117 glutathionylspermidin 76.6 12 0.00026 35.1 7.7 60 44-106 309-379 (397)
109 COG1759 5-formaminoimidazole-4 72.3 5.4 0.00012 36.5 4.1 49 33-84 129-203 (361)
110 PF14403 CP_ATPgrasp_2: Circul 71.9 2.9 6.3E-05 39.7 2.5 62 19-85 310-385 (445)
111 PLN00124 succinyl-CoA ligase [ 64.4 12 0.00027 35.2 5.0 57 12-72 39-106 (422)
112 KOG2983 Uncharacterized conser 60.7 42 0.00092 30.1 7.3 87 76-195 164-256 (334)
113 PF04174 CP_ATPgrasp_1: A circ 59.5 11 0.00024 34.4 3.6 25 164-190 67-91 (330)
114 PRK04247 hypothetical protein; 58.6 1.2E+02 0.0027 26.5 9.8 22 169-191 160-182 (238)
115 KOG0370 Multifunctional pyrimi 53.9 9.3 0.0002 39.8 2.3 136 37-192 528-672 (1435)
116 PF04556 DpnII: DpnII restrict 53.7 22 0.00048 31.9 4.5 34 157-192 179-218 (286)
117 PRK03298 hypothetical protein; 50.1 1.7E+02 0.0037 25.4 9.3 22 168-190 134-156 (224)
118 KOG2157 Predicted tubulin-tyro 47.8 32 0.00068 33.3 4.8 39 164-204 376-414 (497)
119 PF12058 DUF3539: Protein of u 40.5 18 0.00038 26.8 1.5 19 80-98 3-23 (88)
120 PRK10507 bifunctional glutathi 39.5 1E+02 0.0022 30.7 7.0 60 44-106 529-600 (619)
121 TIGR02049 gshA_ferroox glutama 39.3 83 0.0018 29.5 5.9 58 45-105 260-340 (403)
122 PF08886 GshA: Glutamate-cyste 38.9 74 0.0016 29.9 5.5 46 166-214 25-73 (404)
123 PRK14676 hypothetical protein; 35.8 83 0.0018 24.3 4.7 63 151-215 12-88 (117)
124 COG1181 DdlA D-alanine-D-alani 33.9 12 0.00027 33.8 -0.2 59 39-103 84-156 (317)
125 COG0754 Gsp Glutathionylspermi 33.0 24 0.00052 32.8 1.4 55 45-102 299-364 (387)
126 TIGR01956 NusG_myco NusG famil 29.4 1.2E+02 0.0027 26.8 5.2 26 150-175 13-38 (258)
127 PRK14683 hypothetical protein; 29.4 1.7E+02 0.0036 22.9 5.4 63 150-215 17-92 (122)
128 PF11379 DUF3182: Protein of u 28.4 1.9E+02 0.0041 26.8 6.3 58 42-103 136-205 (355)
129 PF01725 Ham1p_like: Ham1 fami 27.6 74 0.0016 26.4 3.4 57 150-214 47-108 (189)
130 PRK14681 hypothetical protein; 26.1 68 0.0015 26.2 2.8 64 150-214 47-126 (158)
131 PRK14680 hypothetical protein; 24.8 1.6E+02 0.0034 23.3 4.7 62 150-214 10-88 (134)
132 PRK14678 hypothetical protein; 24.8 1.7E+02 0.0036 22.7 4.7 64 150-215 10-86 (120)
133 PRK14679 hypothetical protein; 24.5 3.5E+02 0.0075 21.2 7.1 64 150-215 19-96 (128)
134 COG0792 Predicted endonuclease 24.4 3.4E+02 0.0073 21.0 6.6 63 151-215 7-85 (114)
135 PRK14677 hypothetical protein; 24.3 2E+02 0.0043 21.8 5.0 62 152-215 6-81 (107)
136 PHA02117 glutathionylspermidin 23.8 92 0.002 29.2 3.6 23 165-189 105-128 (397)
137 PF02021 UPF0102: Uncharacteri 22.7 92 0.002 22.8 2.8 61 153-215 3-79 (93)
138 PRK14685 hypothetical protein; 21.9 74 0.0016 26.6 2.3 60 150-211 46-121 (177)
139 KOG2155 Tubulin-tyrosine ligas 21.8 56 0.0012 31.4 1.7 34 167-200 572-607 (631)
140 TIGR00252 conserved hypothetic 21.7 77 0.0017 24.5 2.3 62 151-214 11-88 (119)
141 COG5573 Predicted nucleic-acid 21.0 57 0.0012 26.1 1.4 24 168-192 112-140 (142)
142 TIGR02307 RNA_lig_RNL2 RNA lig 20.9 2.8E+02 0.006 25.4 6.0 31 74-106 24-55 (325)
143 PRK12497 hypothetical protein; 20.9 74 0.0016 24.4 2.0 63 150-214 10-88 (119)
144 PRK14682 hypothetical protein; 20.6 84 0.0018 24.2 2.3 62 151-215 9-88 (117)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=2.1e-59 Score=416.50 Aligned_cols=209 Identities=53% Similarity=0.945 Sum_probs=169.5
Q ss_pred CcchhccCccccCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEE
Q 027695 1 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 80 (220)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQ 80 (220)
|+++|++++.+..+++|.+|+++++.++.+++.+.+.+++++||+||||++||||+.||.|+||+++++|+++++||++|
T Consensus 97 ~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQ 176 (307)
T PF05770_consen 97 MLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDLKPPCVLQ 176 (307)
T ss_dssp CHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT--SSEEEE
T ss_pred HHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhcCCCEEEE
Confidence 78999999988889999999999997667788888999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCC--ccccCCCChHHHHHHHHH
Q 027695 81 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD--PCVAELPPRPLLERLAKE 158 (220)
Q Consensus 81 efI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lA~~ 158 (220)
|||||+|++|||||||++++++.|+|+||++.++.....++|+|+++|+.++.+..+.++ +...++|+.+.++++|++
T Consensus 177 eFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~ 256 (307)
T PF05770_consen 177 EFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKE 256 (307)
T ss_dssp E----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHH
T ss_pred EeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999887766667899999999887776665555 455678889999999999
Q ss_pred HHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHHHHHHH
Q 027695 159 LRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 209 (220)
Q Consensus 159 l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~ 209 (220)
+|++|||+|||||+|++++|+++||||||||||||+|+|+|++.|.++|++
T Consensus 257 LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 257 LRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp HHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred HHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 999999999999999999885589999999999999999999999999974
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=2.7e-53 Score=381.07 Aligned_cols=214 Identities=74% Similarity=1.180 Sum_probs=188.1
Q ss_pred CcchhccCccccCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEE
Q 027695 1 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 80 (220)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQ 80 (220)
|++.|+.++.++.+.+|++|+++++.+........++.++++||+|+||+.||||++||+|++|+++++|+.+++|+++|
T Consensus 111 ~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l~~p~~lQ 190 (328)
T PLN02941 111 MLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQ 190 (328)
T ss_pred HHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhcCCcEEEE
Confidence 67889999988888899999999996543334344567899999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCC---CCccccCCCChHHHHHHHH
Q 027695 81 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD---LDPCVAELPPRPLLERLAK 157 (220)
Q Consensus 81 efI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lA~ 157 (220)
|||||+|+|||||||||++.++.|+|+||+..++..+..|.++|+.+++.+..+..+. ++|...++++++++++||.
T Consensus 191 EfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~ 270 (328)
T PLN02941 191 EFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLAR 270 (328)
T ss_pred EecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHH
Confidence 9999999999999999999888999999987544444567899999988766655554 5565667788889999999
Q ss_pred HHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHHHHHHHHHhhh
Q 027695 158 ELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSR 214 (220)
Q Consensus 158 ~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~~~~~~ 214 (220)
+++++||+++||||+|++.+++++|+||||||||||+++|+|.+.|.+++++.++++
T Consensus 271 ~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~ 327 (328)
T PLN02941 271 ELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKK 327 (328)
T ss_pred HHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999766568999999999999999999999999999999876
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.94 E-value=4.6e-26 Score=189.92 Aligned_cols=158 Identities=27% Similarity=0.472 Sum_probs=88.9
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h 85 (220)
..+||++|.+.+..+ ..+..+.+.+.+ +||+|+||+.|+ .+.+|.++.+.+++..+ +.++++|+||++
T Consensus 12 ~~~gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g~---~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~ 86 (190)
T PF08443_consen 12 AKAGIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRGS---SGRGVFLINSPDELESLLDAFKRLENPILVQEFIPK 86 (190)
T ss_dssp HHTT-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-----TTT-EEEE----
T ss_pred HHCCcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCCC---CCCEEEEecCHHHHHHHHHHHHhccCcceEeccccC
Confidence 467899999999963 234444554544 999999999853 58899999999888653 579999999998
Q ss_pred CC-eEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 027695 86 GG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG 164 (220)
Q Consensus 86 ~g-~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lG 164 (220)
.+ +|+||+|||+++++++|++.++ ++|+++ .+. ++..++ ....+++.++|.++.+++|
T Consensus 87 ~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n--------~~~------g~~~~~----~~l~~e~~~~a~~~~~~lg 145 (190)
T PF08443_consen 87 DGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN--------LSR------GGKVEP----YDLPEEIKELALKAARALG 145 (190)
T ss_dssp SS---EEEEEETTEEEEEEE-----------------------------------EE--------HHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEECCEEEEEEEEecCc---ccchhh--------hcc------CceEEE----ecCCHHHHHHHHHHHHHhC
Confidence 74 9999999999999877665332 245443 111 112222 1124568999999999999
Q ss_pred CceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027695 165 LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 165 l~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
++++|||++..+ +.+||+|||..|||+++...
T Consensus 146 l~~~giDi~~~~---~~~~v~EvN~~~~~~~~~~~ 177 (190)
T PF08443_consen 146 LDFAGIDILDTN---DGPYVLEVNPNPGFRGIEEA 177 (190)
T ss_dssp -SEEEEEEEEET---TEEEEEEEETT---TTHHHH
T ss_pred CCEEEEEEEecC---CCeEEEEecCCchHhHHHHH
Confidence 999999976654 25999999999999998654
No 4
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.90 E-value=1.1e-23 Score=178.02 Aligned_cols=167 Identities=19% Similarity=0.347 Sum_probs=115.5
Q ss_pred CCCCCCCcEEEEecCCCCchH-HHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecCC
Q 027695 14 YGKVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 85 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~-~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~h 85 (220)
..||+||+++++.+.+..... ......++||+||||..+ || |.|+.++++.++|.+ ++.+++|||||
T Consensus 4 ~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI-- 78 (203)
T PF07478_consen 4 SAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI-- 78 (203)
T ss_dssp HTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----
T ss_pred hcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--
Confidence 578999999999754211111 112457899999999985 55 788999999999875 35799999999
Q ss_pred CCeEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCcccc--c--ccCCCCCCCccccCCCChHHHHHHHHH
Q 027695 86 GGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--A--ASADDADLDPCVAELPPRPLLERLAKE 158 (220)
Q Consensus 86 ~g~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~lA~~ 158 (220)
+|++|.|.|+|+. +.... ++....++|+|+.+++. + ....++.++++. .+.++++|.+
T Consensus 79 ~G~E~tv~vl~~~~~~~~~~~----------ei~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~-----~~~i~~~a~~ 143 (203)
T PF07478_consen 79 SGREFTVGVLGNGEPRVLPPV----------EIVFPSEFYDYEAKYQPADSETEYIIPADLSEEL-----QEKIKEIAKK 143 (203)
T ss_dssp SSEEEEEEEEESSSTEEEEEE----------EEEESSSEEEHHHHHSGCCSCEEEESS-SS-HHH-----HHHHHHHHHH
T ss_pred cccceEEEEEecCCcccCceE----------EEEcCCCceehhheeccCCCceEEEecCCCCHHH-----HHHHHHHHHH
Confidence 7999999999943 33222 22233468888887743 1 111133333332 5779999999
Q ss_pred HHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCCCCCCCchhH
Q 027695 159 LRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYGKMPEYEHI 202 (220)
Q Consensus 159 l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~ 202 (220)
+.++||+.-++ +|++++. +| ++|++|||..||++....++.+
T Consensus 144 a~~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p~~ 186 (203)
T PF07478_consen 144 AFKALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFPRM 186 (203)
T ss_dssp HHHHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHHHH
T ss_pred HHHHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHHHH
Confidence 99999999776 9999985 34 7999999999999987666543
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.89 E-value=2.4e-22 Score=178.15 Aligned_cols=175 Identities=17% Similarity=0.283 Sum_probs=122.3
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecC
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVN 84 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~ 84 (220)
.+.+||++|.+.++.+ ..+..+.+ +.-.+||+|+||..|+ +|.++.++.+.++++. ++.++++||||+
T Consensus 107 l~~~gip~P~t~~~~~-~~~~~~~~-~~~~~~P~VvKP~~g~---~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~ 181 (300)
T PRK10446 107 LARQGIDLPVTGIAHS-PDDTSDLI-DMVGGAPLVVKLVEGT---QGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIK 181 (300)
T ss_pred HHHcCCCCCCEEEeCC-HHHHHHHH-HHhCCCCEEEEECCCC---CcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeec
Confidence 3467899999988742 22222222 2223799999999953 5889999999987764 356899999998
Q ss_pred C-CCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh
Q 027695 85 H-GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL 163 (220)
Q Consensus 85 h-~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l 163 (220)
+ .|+|++|+|+|++++.+.++..+. ++|.++ ...++ ..... +..++++++|.++.++|
T Consensus 182 ~~~g~d~rv~vig~~~~~~~~r~~~~---~~~~~n--------~~~g~-~~~~~---------~l~~~~~~~a~~a~~al 240 (300)
T PRK10446 182 EAQGCDIRCLVVGDEVVAAIERRAKE---GDFRSN--------LHRGG-AASVA---------SITPQEREIAIKAARTM 240 (300)
T ss_pred cCCCceEEEEEECCEEEEEEEEecCC---Cchhhe--------eccCC-eeccC---------CCCHHHHHHHHHHHHHh
Confidence 6 499999999999987665442211 133222 11111 11111 12466899999999999
Q ss_pred CCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc-----hhHHHHHHHHHHhhhc
Q 027695 164 GLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY-----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 164 Gl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~-----~~~l~~~i~~~~~~~~ 215 (220)
|+.++|+|++.+. +| +||+|||..|||+++... .+++.++|.+.+..++
T Consensus 241 g~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 294 (300)
T PRK10446 241 ALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEY 294 (300)
T ss_pred CCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhccccc
Confidence 9999999999874 34 689999999999887643 5677777776665443
No 6
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.4e-22 Score=180.48 Aligned_cols=172 Identities=21% Similarity=0.281 Sum_probs=123.3
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChh-hhhcc-----C---CCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL-----E---PPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~-~L~~~-----~---~p~vvQefI 83 (220)
...++|+|.++++.+. .+. ....+..++||+|+||+.| | +|.++.++.+.+ +|..+ + ..+++||||
T Consensus 128 ~~~~ipvP~T~i~~~~-~~~-~~~~~~~~g~pvVlKp~~G--s-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi 202 (318)
T COG0189 128 AKAGIPVPPTLITRDP-DEA-AEFVAEHLGFPVVLKPLDG--S-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYI 202 (318)
T ss_pred HhcCCCCCCEEEEcCH-HHH-HHHHHHhcCCCEEEeeCCC--C-CccceEEecCCChhHHHHHHHHhccccceEehhhhc
Confidence 3567999999999743 223 2335667899999999995 4 899999999999 77653 1 369999999
Q ss_pred CCCCeEEEEEEECCeEE-E--EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGEAIK-V--VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~-~--~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
+..++++|.+++||..+ + +||+- |+ .++|++| .++ ++..++ .+.+++.+++|.+++
T Consensus 203 ~~~~~~~rrivv~~~~~~~~y~~~R~-~~--~~~~R~N--------~a~------Gg~~e~----~~l~~e~~elA~kaa 261 (318)
T COG0189 203 PKAKRDDRRVLVGGGEVVAIYALARI-PA--SGDFRSN--------LAR------GGRAEP----CELTEEEEELAVKAA 261 (318)
T ss_pred CcccCCcEEEEEeCCEEeEEeeeccc-cC--CCCceee--------ccc------cccccc----cCCCHHHHHHHHHHH
Confidence 99887877777766655 4 33442 11 2355543 222 333322 123567899999999
Q ss_pred HHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCC----CC--chhHHHHHHHHHHhh
Q 027695 161 RQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM----PE--YEHIFTDFLLSLTQS 213 (220)
Q Consensus 161 ~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~----~~--~~~~l~~~i~~~~~~ 213 (220)
++||+.++|+|++++. + .+||+|||..|++++. ++ ...++.+++.+++++
T Consensus 262 ~~lGl~~~GVDiie~~-~--g~~V~EVN~sP~~~~~i~~~~g~~~~~~~~~~ie~~~~~ 317 (318)
T COG0189 262 PALGLGLVGVDIIEDK-D--GLYVTEVNVSPTGKGEIERVTGVNIAGLIIDAIEKFVRA 317 (318)
T ss_pred HHhCCeEEEEEEEecC-C--CcEEEEEeCCCccccchhhhcCCchHHHHHHHHHHHHhc
Confidence 9999999999999974 3 4899999999987772 33 356777777777654
No 7
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.88 E-value=1.1e-21 Score=170.82 Aligned_cols=168 Identities=21% Similarity=0.360 Sum_probs=122.4
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEe
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQe 81 (220)
+.+||++|.+..+.+ ..+..+. ...++||+|+||..|+ +++++.++.+.+++.++ +.++++||
T Consensus 96 ~~~gip~P~t~~~~~-~~~~~~~--~~~~~~P~vvKP~~g~---~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQe 169 (280)
T TIGR02144 96 AKAGVPTPRTYLAFD-REAALKL--AEALGYPVVLKPVIGS---WGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQE 169 (280)
T ss_pred HHCCcCCCCeEeeCC-HHHHHHH--HHHcCCCEEEEECcCC---CcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEc
Confidence 457899999988852 1222222 2457999999999853 57889999999887541 24799999
Q ss_pred ecCCCCeEEEEEEECCeEEEE-EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 82 FVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
||++.|++++++|+|+++.+. .|.+ . +|..+ .+.+ +...| .+..++++++|.++.
T Consensus 170 fI~~~~~d~~v~vig~~~~~~~~r~~-~-----~~~~~--------~~~g------~~~~~----~~~~~~~~~~a~~~~ 225 (280)
T TIGR02144 170 YINKPGRDIRVFVIGDEAIAAIYRYS-N-----HWRTN--------TARG------GKAEP----CPLDEEVEELAVKAA 225 (280)
T ss_pred ccCCCCCceEEEEECCEEEEEEEEcC-C-----chhhh--------hhcC------Cceec----cCCCHHHHHHHHHHH
Confidence 999879999999999998754 4543 2 22211 1111 11111 112456899999999
Q ss_pred HHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCC-----CchhHHHHHHHHHHh
Q 027695 161 RQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP-----EYEHIFTDFLLSLTQ 212 (220)
Q Consensus 161 ~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~-----~~~~~l~~~i~~~~~ 212 (220)
+++|+.++|||++.+.+ | .+||+|||..|||.++. ++.+.+++++.++++
T Consensus 226 ~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 280 (280)
T TIGR02144 226 EAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLVK 280 (280)
T ss_pred HHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhhC
Confidence 99999999999999753 3 48999999999999864 567888898888764
No 8
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.85 E-value=3.4e-20 Score=160.26 Aligned_cols=155 Identities=20% Similarity=0.343 Sum_probs=111.4
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------C---CCeEEEee
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------E---PPLVLQEF 82 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~---~p~vvQef 82 (220)
+..||++|++..+.+ ..+..+.+ ..++||+|+||..|+ +|.++.++.+.+++..+ . .++++|||
T Consensus 97 ~~~gi~~P~t~~~~~-~~~~~~~~--~~~~~p~vvKP~~g~---~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~ 170 (277)
T TIGR00768 97 AKAGLPQPRTGLAGS-PEEALKLI--EEIGFPVVLKPVFGS---WGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEY 170 (277)
T ss_pred HHCCCCCCCEEEeCC-HHHHHHHH--HhcCCCEEEEECcCC---CCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEee
Confidence 357899999998863 22233322 357899999999964 46899999999888642 2 37999999
Q ss_pred cCCC-CeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHH
Q 027695 83 VNHG-GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR 161 (220)
Q Consensus 83 I~h~-g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~ 161 (220)
|++. |++++|+++|++++...++..+ ++|.++ .+.++. ..+ .+..++++++|.++.+
T Consensus 171 I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n--------~~~g~~------~~~----~~l~~~~~~~a~~~~~ 228 (277)
T TIGR00768 171 IKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN--------LARGGK------AEP----CPLTEEIEELAIKAAK 228 (277)
T ss_pred ecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--------hhcCCe------eee----cCCCHHHHHHHHHHHH
Confidence 9976 5999999999998866544321 122221 111111 111 1123568999999999
Q ss_pred HhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCC
Q 027695 162 QLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 197 (220)
Q Consensus 162 ~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~ 197 (220)
+||+.++|||++++. +| ++||+|||..||+.++.
T Consensus 229 ~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~ 262 (277)
T TIGR00768 229 ALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSV 262 (277)
T ss_pred HhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhH
Confidence 999999999999986 34 59999999999998764
No 9
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=1.2e-19 Score=165.76 Aligned_cols=170 Identities=18% Similarity=0.288 Sum_probs=116.3
Q ss_pred CCCCCCCCcEEEEecCC--CCchHHH--HhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEe
Q 027695 13 SYGKVDVPRQLVIERDA--SSIPDVV--LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~--~~~~~~l--~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQe 81 (220)
+.+||+||.+..+.+.. .+..+.. ....++||+||||..++ | |.||.++.++++|.. ++..+++||
T Consensus 138 ~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~PviVKP~~~G-s--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEe 214 (364)
T PRK14570 138 KSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLG-S--SIGINVAYNENQIEKCIEEAFKYDLTVVIEK 214 (364)
T ss_pred HHcCCCCCCEEEEeccccccchHHHHHHHHHhcCCCEEEEeCCCC-C--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 46789999998885321 0111111 13468999999999854 4 668999999999875 256899999
Q ss_pred ecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccC-CceeeecCcccc--ccc---CCCCCCCccccCCCChHHHHHH
Q 027695 82 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS-AGVFRFPRVSCA--AAS---ADDADLDPCVAELPPRPLLERL 155 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~-~g~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~l 155 (220)
||+ |+++.|.|+|+....+ +|. .++... ..+|+|..++.. +.. ..++.++++. .++++++
T Consensus 215 fI~--GrEi~v~Vlg~~~~~v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~-----~~~i~~~ 280 (364)
T PRK14570 215 FIE--AREIECSVIGNEQIKI----FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKH-----LLDIKEY 280 (364)
T ss_pred CcC--CEEEEEEEECCCCceE----eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHH-----HHHHHHH
Confidence 995 8999999999853111 111 122211 246777665531 111 1133343332 5679999
Q ss_pred HHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 156 AKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 156 A~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
|.++.++||+. ++.+|++++.++| ++||+|||..|||+....++
T Consensus 281 A~~~~~aLg~~G~~RvDf~l~~~~g-~~yvlEiNt~PG~t~~S~~p 325 (364)
T PRK14570 281 AFLTYKNLELRGMARIDFLIEKDTG-LIYLNEINTIPGFTDISMFA 325 (364)
T ss_pred HHHHHHHhCCcceEEEEEEEECCCC-cEEEEEeeCCCCCCcccHHH
Confidence 99999999997 5569999985334 69999999999999875553
No 10
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.81 E-value=5.7e-19 Score=156.58 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=110.6
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------CCCeEEEeecCC
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNH 85 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------~~p~vvQefI~h 85 (220)
.+.+||+||++..+... . . ....++||+||||..++ + |.++.++.++++|..+ ..++++||||
T Consensus 106 l~~~gIptp~~~~~~~~---~-~--~~~~~~~P~vVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI-- 174 (296)
T PRK14569 106 LMHHRMPTPMAKFLTDK---L-V--AEDEISFPVAVKPSSGG-S--SIATFKVKSIQELKHAYEEASKYGEVMIEQWV-- 174 (296)
T ss_pred HHHCCCCCCCeEEEchh---h-h--hHhhcCCCEEEEeCCCC-C--CcCeEEcCCHHHHHHHHHHHHhcCCEEEEccc--
Confidence 34678999999888632 1 1 23568999999999854 3 6789999999998752 2479999999
Q ss_pred CCeEEEEEEECCeEEEE-EEecCCCCcccccccCCceeeecCccccccc-CCCCCCCccccCCCChHHHHHHHHHHHHHh
Q 027695 86 GGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS-ADDADLDPCVAELPPRPLLERLAKELRRQL 163 (220)
Q Consensus 86 ~g~~~KV~ViG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l 163 (220)
.|++|.|.|+|+..... +..+. ..+|+|..++..... ..++.+.++ ..++++++|.++.++|
T Consensus 175 ~G~E~tv~vl~~~~~~~~~i~~~-----------~~~~~~~~k~~~~~~~~~P~~l~~~-----~~~~i~~~a~~~~~~L 238 (296)
T PRK14569 175 TGKEITVAIVNDEVYSSVWIEPQ-----------NEFYDYESKYSGKSIYHSPSGLCEQ-----KELEVRQLAKKAYDLL 238 (296)
T ss_pred ccEEEEEEEECCcCcceEEEecC-----------CCcCChhhccCCCcEEEeCCCCCHH-----HHHHHHHHHHHHHHHh
Confidence 48999999999875322 22211 123443333221110 012222221 2467999999999999
Q ss_pred CCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 164 GLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 164 Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
|+. ++.||++++. +| ++||+|||..||++....++
T Consensus 239 g~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~~~ 274 (296)
T PRK14569 239 GCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSLSP 274 (296)
T ss_pred CCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCHHH
Confidence 987 6679999975 33 69999999999998765444
No 11
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.81 E-value=2.4e-18 Score=152.42 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=109.7
Q ss_pred cCCCCCCCCcEEEEecCCCCchHH---HHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEe
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQE 81 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~---l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQe 81 (220)
.+.+||++|++..++.+..+..+. .....++||+|+||..++ +|+++.++.|.++|.+. ..++++||
T Consensus 113 l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe 189 (315)
T TIGR01205 113 WKALGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVKSEEELQAALDEAFEYDEEVLVEQ 189 (315)
T ss_pred HHHCCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEECCHHHHHHHHHHHHhcCCcEEEEc
Confidence 346889999999987222222111 112468999999999964 36789999999998653 56899999
Q ss_pred ecCCCCeEEEEEEEC-CeEEEEE-EecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHH
Q 027695 82 FVNHGGVLFKVYIVG-EAIKVVR-RFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAK 157 (220)
Q Consensus 82 fI~h~g~~~KV~ViG-~~v~~~~-R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~ 157 (220)
||+ |++++|.|+| ++..... +..-. ..+|+|...+..+.. ..+..++++ ..++++++|.
T Consensus 190 ~i~--G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~i~~~a~ 252 (315)
T TIGR01205 190 FIK--GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGSTEYVIPAPLDEE-----LEEKIKELAL 252 (315)
T ss_pred CCC--CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCeeEEeCCCCCHH-----HHHHHHHHHH
Confidence 994 9999999999 4432221 11100 012333322211110 011222222 1457999999
Q ss_pred HHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC
Q 027695 158 ELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 198 (220)
Q Consensus 158 ~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~ 198 (220)
++.++||+. +++||++++.+ | ++||+|||..||+....-
T Consensus 253 ~~~~~lg~~G~~~vD~~~~~~-g-~~~viEvN~~pg~~~~s~ 292 (315)
T TIGR01205 253 KAYKALGCRGLARVDFFLDEE-G-EIYLNEINTIPGMTAISL 292 (315)
T ss_pred HHHHHhCCCceEEEEEEEeCC-C-CEEEEEeeCCCCCCCccH
Confidence 999999995 88999999853 3 689999999999987543
No 12
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.80 E-value=2.4e-18 Score=151.93 Aligned_cols=162 Identities=20% Similarity=0.284 Sum_probs=112.7
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h 85 (220)
..+||++|.+..+.+. ++..+. ...++||+|+||..++ +|.++.++.+.+++.+. ..++++||||+
T Consensus 107 ~~~gIp~p~~~~~~~~-~~~~~~--~~~~~~P~ivKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~- 179 (304)
T PRK01372 107 QAAGLPTPPWIVLTRE-EDLLAA--IDKLGLPLVVKPAREG---SSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK- 179 (304)
T ss_pred HHCCCCCCCEEEEeCc-chHHHH--HhhcCCCEEEeeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC-
Confidence 4678999999999643 222222 3468999999999965 46789999999988652 56899999996
Q ss_pred CCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccC--CCCCCCccccCCCChHHHHHHHHHHHHHh
Q 027695 86 GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQL 163 (220)
Q Consensus 86 ~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~l~~~l 163 (220)
|+++.|.|+|+++....+...+ .+.++|......+... .+..++++ ..++++++|.++.++|
T Consensus 180 -G~E~~v~vi~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~p~~~~~~-----~~~~l~~~a~~~~~~l 243 (304)
T PRK01372 180 -GRELTVAVLGGKALPVIEIVPA----------GEFYDYEAKYLAGGTQYICPAGLPAE-----IEAELQELALKAYRAL 243 (304)
T ss_pred -CEEEEEEEECCCccceEEEEec----------CCEEeeeccccCCCeEEEeCCCCCHH-----HHHHHHHHHHHHHHHh
Confidence 8999999999987644433211 1233433322211100 01112211 1456899999999999
Q ss_pred CCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027695 164 GLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 164 Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
|+. +++||++++.. | ++||+|||..||+.+-..+
T Consensus 244 g~~g~~~iD~~~~~~-g-~~~viEvN~~p~~~~~~~~ 278 (304)
T PRK01372 244 GCRGWGRVDFMLDED-G-KPYLLEVNTQPGMTSHSLV 278 (304)
T ss_pred CCcceEEEEEEEcCC-C-CEEEEEecCCCCCCcccHH
Confidence 997 66799999863 4 6999999999999874333
No 13
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.80 E-value=1.2e-18 Score=156.92 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=116.1
Q ss_pred CCCCCCCCcEEEEecCCCC--chHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASS--IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~--~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI 83 (220)
+..||++|++..+.+.... ..+. ....++||+|+||..++ | |.++.++.++++|.. .+.++++||||
T Consensus 132 ~~~GIp~p~~~~~~~~~~~~~~~~~-~~~~~~~P~vVKP~~~g-s--S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI 207 (333)
T PRK01966 132 AAAGIPVAPYVVLTRGDWEEASLAE-IEAKLGLPVFVKPANLG-S--SVGISKVKNEEELAAALDLAFEYDRKVLVEQGI 207 (333)
T ss_pred HHcCCCCCCEEEEeccccchhhHHH-HHHhcCCCEEEEeCCCC-C--ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCc
Confidence 4678999999999643221 1111 23468999999999864 3 678999999999865 35789999999
Q ss_pred CCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCccccccc--CCCCCCCccccCCCChHHHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRR 161 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~l~~ 161 (220)
+ |+++.|.|+|+... .+|. .++....++|+|..++..+.. ..++.++++. .+.++++|.++.+
T Consensus 208 ~--G~E~~v~vl~~~~~-----~~~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~ 272 (333)
T PRK01966 208 K--GREIECAVLGNDPK-----ASVP---GEIVKPDDFYDYEAKYLDGSAELIIPADLSEEL-----TEKIRELAIKAFK 272 (333)
T ss_pred C--CEEEEEEEECCCCe-----Eccc---EEEecCCceEcHHHccCCCCceEEeCCCCCHHH-----HHHHHHHHHHHHH
Confidence 5 89999999996311 1111 122222346777666543211 1133333322 5679999999999
Q ss_pred HhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 162 QLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 162 ~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
+||+. ++.+|++++. +| ++||+|||..||++...-++
T Consensus 273 aLg~~G~~rvDf~~~~-~g-~~~vlEiNt~Pg~t~~s~~p 310 (333)
T PRK01966 273 ALGCSGLARVDFFLTE-DG-EIYLNEINTMPGFTPISMYP 310 (333)
T ss_pred HhCCcceEEEEEEEcC-CC-CEEEEEeeCCCCCCcccHHH
Confidence 99996 6679999975 34 68999999999998864443
No 14
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.80 E-value=3.6e-18 Score=163.39 Aligned_cols=184 Identities=17% Similarity=0.265 Sum_probs=118.7
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCcccccee-eeChhhhhcc-------CCCeEEEeecC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPPLVLQEFVN 84 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~l-v~~~~~L~~~-------~~p~vvQefI~ 84 (220)
...||+||.+..+.+ ..+..+.+ ..++ |+|+||..|+ +|.||.+ +.++++|... ...+++|+||
T Consensus 306 ~~aGIpVP~~~~~~~-~~~~~~~~--~~~G-~vVVKP~~G~---~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i- 377 (547)
T TIGR03103 306 SEAGLQVPEQQLAGN-GEAVEAFL--AEHG-AVVVKPVRGE---QGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYV- 377 (547)
T ss_pred HHcCcCCCCEEEECC-HHHHHHHH--HHhC-CEEEEECCCC---CCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEec-
Confidence 457899999999863 22233333 2355 6999998853 6889997 8999998652 4589999999
Q ss_pred CCCeEEEEEEECCeEEEEEEecCCCCcccc---c----------ccC--Cc-----------------eeeecCccccc-
Q 027695 85 HGGVLFKVYIVGEAIKVVRRFSLPDVTKQD---L----------STS--AG-----------------VFRFPRVSCAA- 131 (220)
Q Consensus 85 h~g~~~KV~ViG~~v~~~~R~slp~~~~~~---~----------~~~--~g-----------------~~~~~~~~~~~- 131 (220)
.|+++|++|||++++++.++-.|.+..+. + ... .+ .|++.++...|
T Consensus 378 -~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~ 456 (547)
T TIGR03103 378 -PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQ 456 (547)
T ss_pred -cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCC
Confidence 58999999999999987644334321000 0 000 00 02222221111
Q ss_pred --------ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCC--Cchh
Q 027695 132 --------ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP--EYEH 201 (220)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~--~~~~ 201 (220)
+.+.++.... ..-...+...++|.++++++||.+.|||+|+++-+++.++|||||..||+.+.. +..+
T Consensus 457 ~v~l~~~~Nl~tGg~~~d--vtd~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~~~~~~~ 534 (547)
T TIGR03103 457 RLRVRRTANLHTGGTIHD--VTEQLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPGLANHEPQPTAE 534 (547)
T ss_pred EEEEecCCcccCCCeeEe--cccccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCccccccCCCchHH
Confidence 0011111111 111235778999999999999999999999976444468999999999998775 2334
Q ss_pred HHHHHH
Q 027695 202 IFTDFL 207 (220)
Q Consensus 202 ~l~~~i 207 (220)
.++|++
T Consensus 535 ~~~d~l 540 (547)
T TIGR03103 535 RFIDLL 540 (547)
T ss_pred HHHHHh
Confidence 444443
No 15
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.79 E-value=1.2e-18 Score=157.70 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=114.7
Q ss_pred cCCCCCCCCcEEEEecCCC--CchHHH-HhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEe
Q 027695 12 NSYGKVDVPRQLVIERDAS--SIPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQE 81 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~--~~~~~l-~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQe 81 (220)
.+.+||+||++..+.+... +..+.+ ....++||+|+||..++ + |.+++++.++++|..+ +.++++||
T Consensus 138 l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~PvvVKP~~gg-s--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEe 214 (347)
T PRK14572 138 FLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLGFPQFLKPVEGG-S--SVSTYKITNAEQLMTLLALIFESDSKVMSQS 214 (347)
T ss_pred HHHcCCCCCCEEEEEccccccChHHHHHHHHhcCCCEEEecCCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEc
Confidence 3467899999999854221 111111 12468999999999954 4 5899999999998652 46899999
Q ss_pred ecCCCCeEEEEEEECC----eEEEEEEecCCCCcccccccCCceeeecCcccccccC--CCCCCCccccCCCChHHHHHH
Q 027695 82 FVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERL 155 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~----~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 155 (220)
|| .|++|.|.|+|+ +.... .+|- .+.....++|+|..++..+... .++.++++. .++++++
T Consensus 215 fI--~G~E~sv~vi~~~~~g~~~~~---~l~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~ 281 (347)
T PRK14572 215 FL--SGTEVSCGVLERYRGGKRNPI---ALPA---TEIVPGGEFFDFESKYKQGGSEEITPARISDQE-----MKRVQEL 281 (347)
T ss_pred Cc--ccEEEEEEEEeCccCCCCCce---eccc---EEEecCCCccCHHHccCCCCeEEEECCCCCHHH-----HHHHHHH
Confidence 99 489999999973 21100 1111 0122223467766665432111 133333322 4679999
Q ss_pred HHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 156 AKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 156 A~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
|.++.++||+. +.++|+++++ + .+||+|||..||++....++
T Consensus 282 a~~~~~~Lg~~G~~rvD~~~~~--~-~~~vlEiNt~PG~t~~S~~p 324 (347)
T PRK14572 282 AIRAHESLGCKGYSRTDFIIVD--G-EPHILETNTLPGMTETSLIP 324 (347)
T ss_pred HHHHHHHhCCcceeEEEEEEEC--C-cEEEEeeeCCCCCCcccHHH
Confidence 99999999998 6679999973 3 58999999999999875544
No 16
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.79 E-value=2.2e-18 Score=155.75 Aligned_cols=164 Identities=22% Similarity=0.313 Sum_probs=113.0
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecC
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVN 84 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~ 84 (220)
.+.+||++|.+..+.... +. ....++||+||||..++ | |.|+.++.++++|.. ++..+++||||+
T Consensus 140 l~~~GIp~p~~~~~~~~~-~~----~~~~l~~P~iVKP~~~g-s--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 211 (343)
T PRK14568 140 AKNAGIATPAFWTVTADE-RP----DAATLTYPVFVKPARSG-S--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV 211 (343)
T ss_pred HHHcCcCcCCEEEEECCc-hh----hhhhcCCCEEEEeCCCC-C--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC
Confidence 346789999999996432 11 13468999999999864 4 689999999999964 256899999995
Q ss_pred CCCeEEEEEEECCeE--EEEEEecCCCCcccccccCCceeeecCcccc--cc----cCCCCCCCccccCCCChHHHHHHH
Q 027695 85 HGGVLFKVYIVGEAI--KVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--AA----SADDADLDPCVAELPPRPLLERLA 156 (220)
Q Consensus 85 h~g~~~KV~ViG~~v--~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~lA 156 (220)
|+++.|.|+|+.- .+.. ..++....++|+++.++.. +. ...++.++++. .++++++|
T Consensus 212 --G~E~sv~vl~~~~~~~~~~--------~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a 276 (343)
T PRK14568 212 --GSEVGCAVLGNGADLVVGE--------VDQIRLSHGFFRIHQENEPEKGSENSTIIVPADISAEE-----RSRVQETA 276 (343)
T ss_pred --CEEEEEEEEcCCCCcceec--------ceEEecCCCccchhhhhccccCCCCeeEEeCCCCCHHH-----HHHHHHHH
Confidence 8999999998741 1110 0011112346666544321 00 00122333221 46799999
Q ss_pred HHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 157 KELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 157 ~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
.++.++||+. ++.+|++++. +| ++|++|||..||++....++
T Consensus 277 ~~~~~~Lg~~G~~rvDf~l~~-~g-~~~llEINt~Pg~t~~S~~p 319 (343)
T PRK14568 277 KAIYRALGCRGLARVDMFLQE-DG-TVVLNEVNTLPGFTSYSRYP 319 (343)
T ss_pred HHHHHHhCCCcEEEEEEEEeC-CC-CEEEEEeeCCCCCCccCHHH
Confidence 9999999996 7779999985 34 68999999999998765443
No 17
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.78 E-value=1.1e-17 Score=148.03 Aligned_cols=155 Identities=19% Similarity=0.274 Sum_probs=107.0
Q ss_pred CCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCe
Q 027695 16 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGV 88 (220)
Q Consensus 16 ~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~ 88 (220)
+|++|++..+... . ....++||+|+||..++| |.++.++.|.++|.+. ..++++||||+ |+
T Consensus 106 ~ip~p~~~~~~~~----~---~~~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~--G~ 173 (299)
T PRK14571 106 TVEIPDFVEIKEF----M---KTSPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP--GR 173 (299)
T ss_pred CCCCCCEEEEech----h---hhhhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc--ce
Confidence 6999999988531 1 124589999999998653 5789999999998642 35799999995 89
Q ss_pred EEEEEEECCe----EEEEEEecCCCCcccccccCCceeeecCcccccccC--CCCCCCccccCCCChHHHHHHHHHHHHH
Q 027695 89 LFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 89 ~~KV~ViG~~----v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
++.|.|+|+. +....+.. ...++|+|..++..+... .+..++++. .+.++++|.++.++
T Consensus 174 E~sv~vl~~~~~~~vl~~~e~~----------~~~~~~~~~~k~~~g~~~~~~p~~l~~~~-----~~~i~~~a~~~~~~ 238 (299)
T PRK14571 174 EMTVSILETEKGFEVLPILELR----------PKRRFYDYVAKYTKGETEFILPAPLNPEE-----ERLVKETALKAFVE 238 (299)
T ss_pred EEEEEEEcCCCCeeeeceEEEe----------cCCCccccccccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHH
Confidence 9999999753 22222111 112244444333222110 122233221 45689999999999
Q ss_pred hCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 163 LGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 163 lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
||+. ++++|+++++ + ++||+|||..||++....++
T Consensus 239 lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 239 AGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred hCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHHH
Confidence 9985 7789999964 3 58999999999999876554
No 18
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.76 E-value=8e-18 Score=165.62 Aligned_cols=175 Identities=15% Similarity=0.250 Sum_probs=114.7
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCcccccee-eeChhhhhcc-------CCCeEEEeec
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPPLVLQEFV 83 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~l-v~~~~~L~~~-------~~p~vvQefI 83 (220)
...+|||+|++..+.+ ..+..+. ...++||+|+||..|+ ++.+|.+ +.++++|.+. ..++++||||
T Consensus 222 L~~~GIPvP~~~~v~s-~~~a~~~--a~~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I 295 (727)
T PRK14016 222 LAAAGVPVPEGRVVTS-AEDAWEA--AEEIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVERYI 295 (727)
T ss_pred HHHCCcCCCCeeEeCC-HHHHHHH--HHHcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEec
Confidence 3467899999998853 2223332 3468999999999853 5889998 8999988652 4689999999
Q ss_pred CCCCeEEEEEEECCeEEEEEEecCCCCcccccc--------cC----Cc-----------------------eeeecCcc
Q 027695 84 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS--------TS----AG-----------------------VFRFPRVS 128 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~--------~~----~g-----------------------~~~~~~~~ 128 (220)
+ |++|||+|+|++++++.|+-.+.+.-+... .| .| .++.+++.
T Consensus 296 ~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~ 373 (727)
T PRK14016 296 P--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVP 373 (727)
T ss_pred C--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccC
Confidence 5 899999999999998887754533111000 00 00 01111221
Q ss_pred ccc---------ccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCC----CCCeEEEEEecCCCCCCC
Q 027695 129 CAA---------ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG----TRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 129 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~----~~~~~~ViEVN~fPg~~g 195 (220)
..| +.+.++...+. .-...++..++|.++++++|++++|||++.++- .+....|+|||..||+..
T Consensus 374 ~~G~~v~l~~~~N~s~Gg~~~d~--td~i~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~ 451 (727)
T PRK14016 374 PKGEKVYLRRNANLSTGGTAIDV--TDEVHPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRM 451 (727)
T ss_pred CCCCEEEEeccccccCCCeeEec--ccccCHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhh
Confidence 111 11111111110 011256789999999999999999999999641 011368999999999876
Q ss_pred C
Q 027695 196 M 196 (220)
Q Consensus 196 ~ 196 (220)
.
T Consensus 452 ~ 452 (727)
T PRK14016 452 H 452 (727)
T ss_pred c
Confidence 3
No 19
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.75 E-value=8.7e-17 Score=144.29 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=106.1
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCC-cEEEeecccCCCCccccceeeeChhhhh-------------------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYSLK------------------- 71 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~-P~VvKP~~a~Gs~~sh~m~lv~~~~~L~------------------- 71 (220)
.+.+||+||.+..+.....+ .+.+.+.--++ |+|+||+.| | +++|+.++.+.++..
T Consensus 45 L~~aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~G--s-~GrGI~~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (317)
T TIGR02291 45 AQAAGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQG--S-GGKGILVITSRKDGRYRKPSGATINKEEIERHVS 120 (317)
T ss_pred HHHcCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECCC--C-CccCeEEEEeccccccccccccccchHHHHHHHH
Confidence 35688999998888533222 22232222256 699999995 4 899999997764321
Q ss_pred -------ccCC--CeEEEeecC--CC---------CeEEEEEEECCeEEEEE-EecCCCCcccccccC---Ccee---ee
Q 027695 72 -------KLEP--PLVLQEFVN--HG---------GVLFKVYIVGEAIKVVR-RFSLPDVTKQDLSTS---AGVF---RF 124 (220)
Q Consensus 72 -------~~~~--p~vvQefI~--h~---------g~~~KV~ViG~~v~~~~-R~slp~~~~~~~~~~---~g~~---~~ 124 (220)
.+.. ..++|||+. |+ .+++||+|+|+++.+++ |.+.. .++|.+| +|.. +.
T Consensus 121 ~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R~~~~---~~~~~tN~~~Gg~~~~vdl 197 (317)
T TIGR02291 121 NILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMRLPTR---ASDGKANLHQGAVGVGIDL 197 (317)
T ss_pred HHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEEccCc---cCCcccccccCCceeeeec
Confidence 1111 246667763 32 37999999999998776 54432 1123322 1111 10
Q ss_pred cC--cccccccCCCCCCCcc------ccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 125 PR--VSCAAASADDADLDPC------VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 125 ~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
.+ +...+.........|. ....|..+++.++|.++.+++|+.++|+|++++.. + .++|+|||..|||+
T Consensus 198 ~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvDii~~~~-~-g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 198 ATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVDMVLDKE-E-GPLVLELNARPGLA 273 (317)
T ss_pred CCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEEEEEeCC-C-CEEEEEeCCCCCCC
Confidence 00 0000000000011111 12345567899999999999999999999999753 2 48999999999998
No 20
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=7.5e-17 Score=144.89 Aligned_cols=172 Identities=20% Similarity=0.288 Sum_probs=126.6
Q ss_pred CCCCCCCCcEEEEecCC-CCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEeecC
Q 027695 13 SYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVN 84 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~-~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQefI~ 84 (220)
+..+++++.++.+..++ .+..-.-...+++||++|||... || |-++..+++.++++. .+...++|+|++
T Consensus 112 ~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~ 188 (317)
T COG1181 112 KAEGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT 188 (317)
T ss_pred HHCCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHHHHHhCCceeeccCCC
Confidence 46789999999997542 22221224678999999999984 56 778999999988875 377899999997
Q ss_pred CCCeEEEEEEECCeEEEEEEecCCCCcccccccC-CceeeecCccccccc---CCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 85 HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS-AGVFRFPRVSCAAAS---ADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 85 h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
|+++.|-++|+.. ... .+ ..+++... ..+|+|.+++..+.- ..++.++++. .++++++|.++.
T Consensus 189 --~rei~v~vl~~~~-~~~--~l---~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~-----~~~i~~lA~~a~ 255 (317)
T COG1181 189 --GREIEVGVLGNDY-EEQ--AL---PLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEI-----HEEIKELALRAY 255 (317)
T ss_pred --cceEEEEecCCcc-cce--ec---CceEEecCCCeEEeeeccccCCCCceeeCCCCCCHHH-----HHHHHHHHHHHH
Confidence 9999999999964 111 11 12344433 578999988754211 1122344433 678999999999
Q ss_pred HHhC-CceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchh
Q 027695 161 RQLG-LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEH 201 (220)
Q Consensus 161 ~~lG-l~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~ 201 (220)
++|| ..+.++||+++..++ ++|++|||+.|||+...-|+.
T Consensus 256 ~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~t~~sl~P~ 296 (317)
T COG1181 256 KALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGMTAMSLFPK 296 (317)
T ss_pred HhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCCcccccchh
Confidence 9999 668899999997333 699999999999999887764
No 21
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.72 E-value=1.5e-16 Score=157.02 Aligned_cols=174 Identities=13% Similarity=0.159 Sum_probs=110.1
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeee---Chhhhhc-------cCCCeEEEe
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------LEPPLVLQE 81 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~---~~~~L~~-------~~~p~vvQe 81 (220)
...+||+||.+..+.+. .+..+.. ..-.+||+|+||+.|+ +|.|++++. +.+++.+ .+..+++||
T Consensus 496 L~~~GIpvP~~~~~~~~-e~a~~~~-~~~~g~PvVVKP~~g~---~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEE 570 (752)
T PRK02471 496 LAEAGFPVPAGDEFTSL-EEALADY-SLFADKAIVVKPKSTN---FGLGISIFKEPASLEDYEKALEIAFREDSSVLVEE 570 (752)
T ss_pred HHHCCcCCCCEEEEcCH-HHHHHHH-HHhcCCCEEEEECCCC---CcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEe
Confidence 34678999999988531 2222222 2224899999999853 577888864 4565543 246799999
Q ss_pred ecCCCCeEEEEEEECCeEEEEEEecCCCCccccccc--------CC----c-----------------------eeeecC
Q 027695 82 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA----G-----------------------VFRFPR 126 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~--------~~----g-----------------------~~~~~~ 126 (220)
|| .|++|||+|||++++++.++..+++.-+...+ +. | -+++.+
T Consensus 571 fI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~s 648 (752)
T PRK02471 571 FI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDS 648 (752)
T ss_pred cc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccc
Confidence 99 49999999999999987766545553221110 10 0 011222
Q ss_pred cccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCC------CCCeEEEEEecCCC
Q 027695 127 VSCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG------TRDQFYVIDINYFP 191 (220)
Q Consensus 127 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~------~~~~~~ViEVN~fP 191 (220)
+...|. .+.+++.-. ..-...+...++|.++++++|+.++|||+|+++- ....+.|||||.-|
T Consensus 649 Vp~~Ge~v~L~~~~NlstGg~~~d--vtd~ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P 726 (752)
T PRK02471 649 IPKKGEIVYLRENSNISTGGDSID--MTDDMDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNP 726 (752)
T ss_pred cCCCCCEEEecCCCccCCCCeeEe--cccccCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCC
Confidence 211110 011111100 1111356789999999999999999999999751 11147999999999
Q ss_pred CCC
Q 027695 192 GYG 194 (220)
Q Consensus 192 g~~ 194 (220)
|+.
T Consensus 727 ~l~ 729 (752)
T PRK02471 727 AMY 729 (752)
T ss_pred chh
Confidence 953
No 22
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.71 E-value=1.5e-16 Score=142.43 Aligned_cols=156 Identities=12% Similarity=0.161 Sum_probs=101.7
Q ss_pred CCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeCh-hhh-------hcc-CCCeEEEeecCC-CC
Q 027695 18 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSL-------KKL-EPPLVLQEFVNH-GG 87 (220)
Q Consensus 18 ~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~-~~L-------~~~-~~p~vvQefI~h-~g 87 (220)
++|.+.+.. +..++.+.+.+ .+ |+|+||+.|+ +++++.++.+. ..+ ... ..++++||||+. .+
T Consensus 133 ~vP~T~v~~-~~~~~~~~~~~--~g-~vVvKPl~G~---~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~ 205 (312)
T TIGR01380 133 VIPPTLVTR-DKAEIRAFLAE--HG-DIVLKPLDGM---GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKE 205 (312)
T ss_pred CCCCEEEeC-CHHHHHHHHHH--cC-CEEEEECCCC---CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccC
Confidence 699988654 32334333333 44 9999999953 68889888652 222 222 458999999986 46
Q ss_pred eEEEEEEECCeEEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH---HH
Q 027695 88 VLFKVYIVGEAIKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQ 162 (220)
Q Consensus 88 ~~~KV~ViG~~v~~-~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~---~~ 162 (220)
.|+||+|+|+++++ ++|+ +.+ ++|+++ ...+ +...+ .+..++..++|.++. ++
T Consensus 206 ~D~Rv~vv~g~vv~~ai~R~~~~----gd~r~N--------~~~G------g~~~~----~~l~~e~~~ia~~~~~~~~~ 263 (312)
T TIGR01380 206 GDKRILLIDGEPIGAAVARIPAG----GEFRGN--------LAVG------GRGEA----TELSERDREICADVAPELKR 263 (312)
T ss_pred CCEEEEEECCeEEEEEEEecCCC----CCcccc--------ccCC------ceeec----cCCCHHHHHHHHHHHHHHHh
Confidence 89999999999876 6654 322 244443 1111 11111 112455688888887 67
Q ss_pred hCCceeEEEEEEeCCCCCeEEEEEecCC--CCCCCCCCc-----hhHHHHHHHH
Q 027695 163 LGLRLFNLDIIREHGTRDQFYVIDINYF--PGYGKMPEY-----EHIFTDFLLS 209 (220)
Q Consensus 163 lGl~l~G~Dvi~~~~~~~~~~ViEVN~f--Pg~~g~~~~-----~~~l~~~i~~ 209 (220)
+|+.++|||+| + .+|+|||.. +||.++... .+.++++|.+
T Consensus 264 ~gl~~agVDii-----g--~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~~ 310 (312)
T TIGR01380 264 RGLLFVGIDVI-----G--GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIEK 310 (312)
T ss_pred cCCcEEEEEEe-----C--CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHHh
Confidence 79999999999 2 369999976 589877554 4455555544
No 23
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.71 E-value=2.3e-16 Score=156.81 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=118.3
Q ss_pred CCCCCCCCcEEEEecCC--CCchHHH--HhcCCCCcEEEeecccCCCCccccceeeeChhhhhc-------cCCCeEEEe
Q 027695 13 SYGKVDVPRQLVIERDA--SSIPDVV--LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~--~~~~~~l--~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~-------~~~p~vvQe 81 (220)
+..||+||++..++... .+....+ ....++||+|+||..+ || |.|+.++.++++|.. .+.++++||
T Consensus 577 ~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~-Gs--S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe 653 (809)
T PRK14573 577 SDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHL-GS--SIGVFEVHNVEELRDKISEAFLYDTDVFVEE 653 (809)
T ss_pred HHCCCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCcEEEEe
Confidence 46789999999986321 1111111 2356899999999996 44 579999999999865 356899999
Q ss_pred ecCCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccc-ccc----CCCCCCCccccCCCChHHHHHHH
Q 027695 82 FVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA-AAS----ADDADLDPCVAELPPRPLLERLA 156 (220)
Q Consensus 82 fI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~lA 156 (220)
||. +|+++.|.|+|+.-.... .+ +. .+.....++|+|..++.. +.. ..++.++++. .++++++|
T Consensus 654 ~i~-~grEi~v~vl~~~~~~~~-~~-~~---~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a 722 (809)
T PRK14573 654 SRL-GSREIEVSCLGDGSSAYV-IA-GP---HERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKES-----QEQVLELA 722 (809)
T ss_pred ccC-CCEEEEEEEEeCCCCceE-ec-cc---eEEccCCCeeCchhcccCCCCCceEEecCCCCCHHH-----HHHHHHHH
Confidence 986 579999999998621110 01 11 122222457888777632 110 1133444332 57899999
Q ss_pred HHHHHHhCCcee-EEEEEEeCCCCCeEEEEEecCCCCCCCCCCch
Q 027695 157 KELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 157 ~~l~~~lGl~l~-G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~ 200 (220)
.++.++||+.-+ .+|++++.+ | ++||+|||..|||+....++
T Consensus 723 ~~~~~aLg~~G~~riDf~v~~~-g-~~yv~EiNt~PG~t~~s~~p 765 (809)
T PRK14573 723 ERIYRLLQGKGSCRIDFFLDEE-G-NFWLSEMNPIPGMTEASPFL 765 (809)
T ss_pred HHHHHHhCCceEEEEEEEEcCC-C-CEEEEEeeCCCCCCcccHHH
Confidence 999999999955 599999753 3 68999999999998864443
No 24
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.71 E-value=2.3e-16 Score=157.89 Aligned_cols=175 Identities=17% Similarity=0.241 Sum_probs=114.1
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCcccccee-eeChhhhhcc-------CCCeEEEeec
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKKL-------EPPLVLQEFV 83 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~l-v~~~~~L~~~-------~~p~vvQefI 83 (220)
...+|||+|.+..+.+ ..+..+. ...++||+|+||..|+ .+.++.+ +.++++|.+. ..++++|+||
T Consensus 221 L~~~GIpvP~~~~~~s-~~ea~~~--~~~ig~PvVVKP~~g~---~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI 294 (864)
T TIGR02068 221 LSDAGVPVPEGTVVQS-AEDAWEA--AQDLGYPVVIKPYDGN---HGRGVTINILTRDEIESAYEAAVEESSGVIVERFI 294 (864)
T ss_pred HHHcCcCCCCEEEECC-HHHHHHH--HHHcCCCEEEEECCCC---CccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEec
Confidence 4467899999998863 2223332 3457999999999853 4788998 9999998652 4589999999
Q ss_pred CCCCeEEEEEEECCeEEEEEEecCCCCccccccc--------C----Cc-----------------------eeeecCcc
Q 027695 84 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S----AG-----------------------VFRFPRVS 128 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~--------~----~g-----------------------~~~~~~~~ 128 (220)
+ |++|||+|+|++++++.|+-.|++.-+...+ | .| -|+.+++.
T Consensus 295 ~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~ 372 (864)
T TIGR02068 295 T--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVP 372 (864)
T ss_pred c--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccC
Confidence 5 8999999999999988766545532111000 0 00 01111221
Q ss_pred cccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCCC----CCeEEEEEecCCCCCCC
Q 027695 129 CAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGT----RDQFYVIDINYFPGYGK 195 (220)
Q Consensus 129 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~----~~~~~ViEVN~fPg~~g 195 (220)
..|. .+.++...+. .-...+...++|.++++++||+++|+|++.++-+ +....|||||.-||+..
T Consensus 373 ~~g~~v~l~~~~Nls~Gg~~~d~--td~i~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~ 450 (864)
T TIGR02068 373 AKGRIVYLRATANLSTGGVAIDR--TDEIHPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRM 450 (864)
T ss_pred CCCCEEEEeccccccCCCceEec--ccccCHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCcchhh
Confidence 1111 0111111000 0112466899999999999999999999996311 11368999999999764
Q ss_pred C
Q 027695 196 M 196 (220)
Q Consensus 196 ~ 196 (220)
.
T Consensus 451 h 451 (864)
T TIGR02068 451 H 451 (864)
T ss_pred c
Confidence 4
No 25
>PRK12458 glutathione synthetase; Provisional
Probab=99.70 E-value=3.5e-16 Score=141.64 Aligned_cols=163 Identities=16% Similarity=0.211 Sum_probs=110.5
Q ss_pred CCCCcEEEEecCCCCchHHHHhcCCCC-cEEEeecccCCCCccccceeeeChhh--hhc----c--CCCeEEEeecCC-C
Q 027695 17 VDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS--LKK----L--EPPLVLQEFVNH-G 86 (220)
Q Consensus 17 I~~P~~~~i~~~~~~~~~~l~~~~l~~-P~VvKP~~a~Gs~~sh~m~lv~~~~~--L~~----~--~~p~vvQefI~h-~ 86 (220)
+++|.+.+.. +..++.+.+. ..++ |+|+||+.|. +|+++.++.+.+. +.. + ..++++||||+. .
T Consensus 139 ~~vP~T~v~~-~~~~~~~~~~--~~~~~pvVvKPl~G~---gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~ 212 (338)
T PRK12458 139 EVRPTTHISR-NKEYIREFLE--ESPGDKMILKPLQGS---GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAE 212 (338)
T ss_pred CCCCCEEEeC-CHHHHHHHHH--HcCCCeEEEEECCCC---CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCC
Confidence 6799988764 2223333332 3444 5999999953 6889999986653 322 1 458999999986 4
Q ss_pred CeEEEEEEECCeEE------EEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 87 GVLFKVYIVGEAIK------VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 87 g~~~KV~ViG~~v~------~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
+.|+||+|+|++++ +++++... .++|+++ .+. ++...+ ....++.+++|.++.
T Consensus 213 ~gDiRv~vv~g~~v~~~g~~~a~~R~~~---~~d~RsN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~ 271 (338)
T PRK12458 213 EGDVRILLLNGEPLERDGHYAAMRRVPA---GGDVRSN--------VHA------GGSVVK----HTLTKEELELCEAIR 271 (338)
T ss_pred CCCEEEEEECCEEEeeccceeEEEEecC---CCCeeec--------ccC------CCcccC----cCCCHHHHHHHHHHH
Confidence 68999999999999 77655321 1244432 111 111111 112466899999998
Q ss_pred HHh---CCceeEEEEEEeCCCCCeEEEEEecC-CC-CCCCC-----CCchhHHHHHHHHHHhh
Q 027695 161 RQL---GLRLFNLDIIREHGTRDQFYVIDINY-FP-GYGKM-----PEYEHIFTDFLLSLTQS 213 (220)
Q Consensus 161 ~~l---Gl~l~G~Dvi~~~~~~~~~~ViEVN~-fP-g~~g~-----~~~~~~l~~~i~~~~~~ 213 (220)
.+| ||.+.|+|+| + + +|+|||. +| |+.++ .|+...++++|++.++.
T Consensus 272 ~~l~~~GL~~~gVDli---~-~---~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~ 327 (338)
T PRK12458 272 PKLVRDGLFFVGLDIV---G-D---KLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQR 327 (338)
T ss_pred HHHhhcCCeEEeEEEE---C-C---EEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhH
Confidence 888 9999999998 2 2 5899998 68 55552 45678889999888754
No 26
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.69 E-value=4.7e-16 Score=152.38 Aligned_cols=173 Identities=14% Similarity=0.213 Sum_probs=109.5
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCC-CCcEEEeecccCCCCccccceeeeC---hhhhhc-------cCCCeEEE
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAYD---QYSLKK-------LEPPLVLQ 80 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l-~~P~VvKP~~a~Gs~~sh~m~lv~~---~~~L~~-------~~~p~vvQ 80 (220)
...+|||||.+..+++.. +..+.. ..+ +||+||||..|+ .|.|++++.+ ++++.+ .+..++||
T Consensus 483 L~~aGIPVP~g~~~~~~~-~a~~~~--~~~~g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVE 556 (737)
T TIGR01435 483 LAEAGFRVPFGDEFSSQA-LALEAF--SLFENKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIE 556 (737)
T ss_pred HHHcCcCCCCEEEECCHH-HHHHHH--HHhcCCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEE
Confidence 346789999999886421 122212 234 799999999853 4778998876 555543 24579999
Q ss_pred eecCCCCeEEEEEEECCeEEEEEEecCCCCccccccc--------CC----c----------------------eeeecC
Q 027695 81 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA----G----------------------VFRFPR 126 (220)
Q Consensus 81 efI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~--------~~----g----------------------~~~~~~ 126 (220)
||| .|++|||+|||+++.++.++-.+++.-+...+ +. | -|.+.+
T Consensus 557 efI--~G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tlds 634 (737)
T TIGR01435 557 EFL--PGTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDS 634 (737)
T ss_pred ecc--cCCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccc
Confidence 999 49999999999999987766556653221100 00 0 011122
Q ss_pred cccccc---------cCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCCCC------CeEEEEEecCCC
Q 027695 127 VSCAAA---------SADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTR------DQFYVIDINYFP 191 (220)
Q Consensus 127 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~------~~~~ViEVN~fP 191 (220)
+...|. .+.+++.-. ..-...+..+++|.++++++|+.+.|||+|+++-+. ..+.|||||.-|
T Consensus 635 Vp~~Ge~V~Lr~~aNlstGG~~iD--vTd~ihp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P 712 (737)
T TIGR01435 635 IPKKEQIVYLRENSNVSTGGDSID--MTDEMDDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIWGVIEANFNP 712 (737)
T ss_pred cCCCCCEEEEcCCCcccCCCceEe--cccccCHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccceEEEEEcCCc
Confidence 211110 011111100 011124668999999999999999999999974211 127899999999
Q ss_pred CCC
Q 027695 192 GYG 194 (220)
Q Consensus 192 g~~ 194 (220)
|+.
T Consensus 713 ~l~ 715 (737)
T TIGR01435 713 AMH 715 (737)
T ss_pred chh
Confidence 953
No 27
>PRK05246 glutathione synthetase; Provisional
Probab=99.69 E-value=2.4e-16 Score=141.09 Aligned_cols=159 Identities=15% Similarity=0.206 Sum_probs=105.1
Q ss_pred CCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeC-hhhh-------hcc-CCCeEEEeecCCC-C
Q 027695 18 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNHG-G 87 (220)
Q Consensus 18 ~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~-~~~L-------~~~-~~p~vvQefI~h~-g 87 (220)
++|.+.+.+ +..+..+.+.. .+ |+|+||+.| + ++.++.++.. ...+ ... ..++++|+||+.. +
T Consensus 134 ~vP~T~~~~-~~~~~~~~~~~--~~-~vVlKP~~G--~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~ 206 (316)
T PRK05246 134 LMPPTLVTR-DKAEIRAFRAE--HG-DIILKPLDG--M-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKE 206 (316)
T ss_pred cCCCEEEeC-CHHHHHHHHHH--CC-CEEEEECCC--C-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCC
Confidence 689988765 22233333333 34 999999995 3 6888988854 3222 222 4699999999864 6
Q ss_pred eEEEEEEECCeEEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH---HH
Q 027695 88 VLFKVYIVGEAIKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQ 162 (220)
Q Consensus 88 ~~~KV~ViG~~v~~-~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~---~~ 162 (220)
.|+||+|+|+++++ +.+| +.+ ++|++| .+.++. ..... ..++..++|.++. +.
T Consensus 207 ~D~Rv~vv~g~vv~~a~~R~~~~----~~~rtN--------~~~Gg~-~~~~~---------l~~~~~~ia~~~~~~l~~ 264 (316)
T PRK05246 207 GDKRILLVDGEPVGYALARIPAG----GETRGN--------LAAGGR-GEATP---------LTERDREICAAIGPELKE 264 (316)
T ss_pred CCEEEEEECCEEhhheeEecCCC----CCcccC--------ccCCce-EeccC---------CCHHHHHHHHHHHHHHHH
Confidence 89999999999887 6544 322 244433 222211 11111 2345688888888 57
Q ss_pred hCCceeEEEEEEeCCCCCeEEEEEecCC-C-CCCCCCCc-----hhHHHHHHHHHHh
Q 027695 163 LGLRLFNLDIIREHGTRDQFYVIDINYF-P-GYGKMPEY-----EHIFTDFLLSLTQ 212 (220)
Q Consensus 163 lGl~l~G~Dvi~~~~~~~~~~ViEVN~f-P-g~~g~~~~-----~~~l~~~i~~~~~ 212 (220)
+|+.++|||++ + + ||+|||.+ | ||.++... .+.+++++++.+.
T Consensus 265 ~gl~~~GVDli---~--~--~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 265 RGLIFVGIDVI---G--D--YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred hCCCEEEEEEe---C--C--EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 79999999999 2 1 59999986 6 88888654 4667777766554
No 28
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.63 E-value=5.5e-15 Score=119.83 Aligned_cols=152 Identities=21% Similarity=0.321 Sum_probs=88.6
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEee
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQEF 82 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQef 82 (220)
..||++|++..+++. .++.+.. ..++||+|+||..|+ +|.+|.++.++++|..+ ..++++|||
T Consensus 14 ~~gv~~P~~~~~~~~-~~~~~~~--~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~ 87 (184)
T PF13535_consen 14 KAGVPVPKTRIVDSE-EELRAFA--EDLGFPFVVKPVDGS---GSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEY 87 (184)
T ss_dssp HHTS----EEEECSH-HHHHHHH--HHSSSSEEEEESS-S---TTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE-
T ss_pred HcCcCCCCEEEECCH-HHHHHHH--HHcCCCEEEEcCccc---cCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEe
Confidence 468999999999632 2333322 346799999999965 46899999999999764 247999999
Q ss_pred cCCCCeEEEEEEECCeEEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 83 VNHGGVLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
|+.....+.+++.++++++. .+... .. ...... ..... .. .. .+ .+..+.+++++.++.
T Consensus 88 i~g~e~~~~~~~~~G~~~~~~~~~~~~-~~-~~~~~~-~~~~~--------~~-~~--~~-----~~~~~~~~~~~~~~~ 148 (184)
T PF13535_consen 88 IPGDEYSVDGVVDDGEVVFAGISRYVR-QS-PGHFSG-GVPTG--------YS-VP--SE-----PPLPEELRDLARKLL 148 (184)
T ss_dssp --SEEEEEEEEEETTEEEEEEEEEEEE-EE-TCCCSS-SEEEE--------EE-ES---------CEHHHHHHHHHHHHH
T ss_pred eeeeeEEEEEEEEcceEEEEEEEEEec-cc-cccccc-ceeee--------ee-cc--cc-----cccHHHHHHHHHHHH
Confidence 97333445556667776543 23211 00 000000 00000 00 00 01 111367999999999
Q ss_pred HHhCC--ceeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 161 RQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 161 ~~lGl--~l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+.+|+ ..+++|++.+.+ | +++++|||.-||
T Consensus 149 ~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 149 RALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp HHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred HHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 99999 588899999974 5 799999999876
No 29
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.59 E-value=1.8e-14 Score=130.92 Aligned_cols=156 Identities=13% Similarity=0.196 Sum_probs=104.2
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEe
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQE 81 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQe 81 (220)
..+||++|.+..+++. ++..+. ...++||+|+||..|+ +|.++.++.++++|... +.++++||
T Consensus 110 ~~~gip~p~~~~~~~~-~~~~~~--~~~~g~P~VvKP~~g~---~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe 183 (380)
T TIGR01142 110 EELGLPTSRYMFADSL-DELREA--VEKIGYPCVVKPVMSS---SGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEE 183 (380)
T ss_pred HHCCCCCCCceEeCCH-HHHHHH--HHHcCCCEEEEECCCc---CCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 4678999999998632 223222 2468999999998753 57799999999998642 35799999
Q ss_pred ecCCCCeEEEEEEE---CCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 027695 82 FVNHGGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKE 158 (220)
Q Consensus 82 fI~h~g~~~KV~Vi---G~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~ 158 (220)
||+ .++++.|.++ ++++... +...+. ...+.|. . ...++.++++. .++++++|.+
T Consensus 184 ~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~------~~~~~~~------~--~~~p~~l~~~~-----~~~i~~~a~~ 241 (380)
T TIGR01142 184 FID-FDYEITLLTVRHVDGNTTFC--APIGHR------QIDGDYH------E--SWQPQEMSEKA-----LEEAQRIAKR 241 (380)
T ss_pred ecC-CCEEEEEEEEEcCCCCEEEe--cCcceE------EeCCeeE------E--EECCCCCCHHH-----HHHHHHHHHH
Confidence 997 3689998887 3333221 111010 0011111 0 00122333222 4668999999
Q ss_pred HHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027695 159 LRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 159 l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
+.++||+. ++++|++++++ .+||+|||..||..+....
T Consensus 242 ~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~~~ 280 (380)
T TIGR01142 242 ITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMVTL 280 (380)
T ss_pred HHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceEEe
Confidence 99999995 77899999742 4899999999997766543
No 30
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.58 E-value=3.2e-14 Score=128.63 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=103.7
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG 87 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g 87 (220)
..+||++|.+..+++. .+..+. ...++||+|+||..+ |+ +|.++.++.++++|... +.++++||||+ .+
T Consensus 107 ~~~gip~p~~~~~~~~-~~~~~~--~~~~g~P~vvKp~~~-g~-~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~-~~ 180 (352)
T TIGR01161 107 QKLGLPVPPFLVIKDE-EELDAA--LQELGFPVVLKARTG-GY-DGRGQYRIRNEADLPQAAKELGDRECIVEEFVP-FE 180 (352)
T ss_pred HHcCCCCCCccEeCCH-HHHHHH--HHHcCCCEEEEeCCC-CC-CCCCEEEECCHHHHHHHHHhcCCCcEEEEecCC-CC
Confidence 4578999999999632 223222 246899999999984 32 57899999999998653 34899999997 47
Q ss_pred eEEEEEEEC---CeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 027695 88 VLFKVYIVG---EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG 164 (220)
Q Consensus 88 ~~~KV~ViG---~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lG 164 (220)
+++.|.++. +++... |-. +.....+..+++- .++.++++. .++++++|.++.++||
T Consensus 181 ~E~sv~~~~~~~G~~~~~-----~~~---~~~~~~g~~~~~~--------~p~~~~~~~-----~~~~~~~a~~i~~~l~ 239 (352)
T TIGR01161 181 RELSVIVARSADGETAFY-----PVV---ENIHQDGILRYVV--------APAAVPDAI-----QARAEEIARRLMEELG 239 (352)
T ss_pred eEEEEEEEEcCCCCEEEE-----CCc---ccEEeCCEEEEEE--------CCCCCCHHH-----HHHHHHHHHHHHHHcC
Confidence 999998873 333322 110 0001112222110 122233221 4678999999999999
Q ss_pred Cc-eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027695 165 LR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 165 l~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+. .+++|++++.+ | ++||+|+|.-||=.|
T Consensus 240 ~~G~~~ve~~~~~d-g-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 240 YVGVLAVEMFVLPD-G-RLLINELAPRVHNSG 269 (352)
T ss_pred ceeEEEEEEEEeCC-C-cEEEEEecCCCCCcC
Confidence 96 77899999853 4 589999999998544
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.56 E-value=3.8e-14 Score=129.47 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=106.6
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGG 87 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g 87 (220)
..+||++|++..+++. .+..+. ...++||+|+||..+ |+ +|+|+.++.++++|... ..++++||||+ .+
T Consensus 109 ~~~Gip~p~~~~v~s~-~~l~~~--~~~~g~P~vlKp~~~-g~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~-~~ 182 (372)
T PRK06019 109 DKLGIPVAPFAVVDSA-EDLEAA--LADLGLPAVLKTRRG-GY-DGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP-FE 182 (372)
T ss_pred HHCCCCCCCceEeCCH-HHHHHH--HHHcCCcEEEEeCCC-Cc-CCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC-CC
Confidence 4578999999999632 223222 246899999999984 34 68999999999998763 35899999997 47
Q ss_pred eEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC
Q 027695 88 VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG 164 (220)
Q Consensus 88 ~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lG 164 (220)
+++.|.++.+ ++... . ...+. +..+.+++.. .++.++++. .++++++|.++.++||
T Consensus 183 ~E~sv~~~~~~~G~~~~~-p-~~e~~------~~~gi~~~~~--------~pa~~~~~~-----~~~~~~~a~~i~~~L~ 241 (372)
T PRK06019 183 REVSVIVARGRDGEVVFY-P-LVENV------HRNGILRTSI--------APARISAEL-----QAQAEEIASRIAEELD 241 (372)
T ss_pred eEEEEEEEECCCCCEEEe-C-CcccE------EeCCEEEEEE--------CCCCCCHHH-----HHHHHHHHHHHHHHcC
Confidence 9999988753 33322 1 00111 1123333211 122333322 5679999999999999
Q ss_pred Cc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027695 165 LR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 165 l~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
+. ++++||+++. +| ++||+|+|.-|+-.|.
T Consensus 242 ~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg~ 272 (372)
T PRK06019 242 YVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSGH 272 (372)
T ss_pred ccceeEEEEEEcC-CC-eEEEEEecCCccCccc
Confidence 87 7789999974 34 6999999999986554
No 32
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.53 E-value=1.6e-13 Score=132.24 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=106.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h 85 (220)
..+||++|.+..+.+. .+..+. ...++||+|+||..+ |+ +|+++.++.++++|+.. +.++++|+||+
T Consensus 130 ~~~GIptp~~~~v~~~-~el~~~--~~~ig~P~VvKP~~g-gs-~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~- 203 (577)
T PLN02948 130 SKHGIPLPEFMEIDDL-ESAEKA--GDLFGYPLMLKSRRL-AY-DGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP- 203 (577)
T ss_pred HHCCcCCCCeEEeCCH-HHHHHH--HHhcCCcEEEEeCCC-CC-CCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-
Confidence 4678999999998632 222222 346899999999984 33 57899999999998652 35899999996
Q ss_pred CCeEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 027695 86 GGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 86 ~g~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
..+++.|.|+++ ++.+. |.. +..+..+++++.. .++.++++. .++++++|.++.++
T Consensus 204 ~~~EisV~v~r~~~G~i~~~-----p~~---E~~~~~~~~~~~~--------~Pa~l~~~~-----~~~~~~~A~~~~~a 262 (577)
T PLN02948 204 FVKELAVMVARSRDGSTRCY-----PVV---ETIHKDNICHVVE--------APANVPWKV-----AKLATDVAEKAVGS 262 (577)
T ss_pred CCeEEEEEEEECCCCCEEEe-----cCc---ccEEECCeeEEEE--------ECCCCCHHH-----HHHHHHHHHHHHHH
Confidence 359999999943 33321 221 1111112222110 133344332 57799999999999
Q ss_pred hCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027695 163 LGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 163 lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
||.. ++.+|++++.+ | ++||+|||..||..|.
T Consensus 263 Lg~~Gv~~vEffv~~d-G-~v~v~EInpRpg~sGh 295 (577)
T PLN02948 263 LEGAGVFGVELFLLKD-G-QILLNEVAPRPHNSGH 295 (577)
T ss_pred hCCCeEEEEEEEEcCC-C-cEEEEEEeCCCCCCCc
Confidence 9977 66799999753 4 6899999999997663
No 33
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.48 E-value=7.3e-13 Score=117.74 Aligned_cols=144 Identities=25% Similarity=0.340 Sum_probs=97.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---CCCeEEEeecCCCCeE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---EPPLVLQEFVNHGGVL 89 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---~~p~vvQefI~h~g~~ 89 (220)
..+||++|.+..+++. .+..+.+....++||+|+||..|+ +|.++.++.+.++|..+ ..++++|||| .|.+
T Consensus 120 ~~~gip~p~~~~~~~~-~~~~~~~~~~~~~~P~viKP~~g~---~s~gv~~v~~~~el~~~~~~~~~~lvqeyi--~G~e 193 (326)
T PRK12767 120 KENGIPTPKSYLPESL-EDFKAALAKGELQFPLFVKPRDGS---ASIGVFKVNDKEELEFLLEYVPNLIIQEFI--EGQE 193 (326)
T ss_pred HHcCCCCCCEEcccCH-HHHHhhhhcccCCCCEEEEeCCCC---CccCeEEeCCHHHHHHHHHhCCCeEEEecc--CCce
Confidence 4567999999888532 223222223578999999998754 47789999999998763 3589999999 5777
Q ss_pred EEEEEE---CCeEEE-EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 027695 90 FKVYIV---GEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 165 (220)
Q Consensus 90 ~KV~Vi---G~~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl 165 (220)
+.+-++ ++++++ ..+..+.- ..|. ..... ....+++.+++.++.++||+
T Consensus 194 ~~v~~~~~~~G~~~~~~~~~~~~~--------~~g~-----------~~~~~--------~~~~~~i~~~~~~i~~~lg~ 246 (326)
T PRK12767 194 YTVDVLCDLNGEVISIVPRKRIEV--------RAGE-----------TSKGV--------TVKDPELFKLAERLAEALGA 246 (326)
T ss_pred EEEEEEEcCCCCEEEEEEeeeeee--------cCCc-----------eeEEE--------EcCCHHHHHHHHHHHHhcCC
Confidence 776555 455543 33322100 0000 00000 01135689999999999999
Q ss_pred c-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 166 R-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 166 ~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+ ++++|+++++ + +++++|+|..++
T Consensus 247 ~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 247 RGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred eeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 6 7889999985 3 599999998554
No 34
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.45 E-value=1.7e-12 Score=122.28 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=99.2
Q ss_pred CCCCCCCCcEEEEecCC-CCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------CCCeEEEeecCC
Q 027695 13 SYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~-~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------~~p~vvQefI~h 85 (220)
+..||+||++.....+. .+..+......++||+||||..| || |+|+.+|.++++|+.+ ...+++|+||+
T Consensus 151 ~~aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~~G-GS--S~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~- 226 (493)
T PRK06524 151 NEAGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTPYG-DS--GSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR- 226 (493)
T ss_pred HHcCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEECCC-CC--CcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC-
Confidence 46789999998863221 11111121224999999999973 44 8999999999999763 24689999995
Q ss_pred CCeEEEE--EEECC-eEEEE-EEecCCCCcccccc-cCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 86 GGVLFKV--YIVGE-AIKVV-RRFSLPDVTKQDLS-TSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 86 ~g~~~KV--~ViG~-~v~~~-~R~slp~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
|+++-| ++.++ .+... .+..++.. ++. ...|.++. ...++.++++. .++++++|.++.
T Consensus 227 -GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr~G~~~~--------~i~PA~L~~ei-----~eeIqeiA~ka~ 289 (493)
T PRK06524 227 -NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYRGGWCGN--------DIWPGALPPAQ-----TRKAREMVRKLG 289 (493)
T ss_pred -cEEEEEEEEEeCCCCEEeccccccccce---EEEEccCCeEEE--------EEccCCCCHHH-----HHHHHHHHHHHH
Confidence 788877 44443 23221 12212110 111 01111110 01133344332 567999999999
Q ss_pred HHh---CCc-eeEEEEEEeCCCCCeEEEEEecCCCCC
Q 027695 161 RQL---GLR-LFNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 161 ~~l---Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++| |+. ++++|++++.+++ ++|++|||.-|+=
T Consensus 290 ~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 290 DVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred HHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 999 555 6679999985334 6999999998873
No 35
>PRK05586 biotin carboxylase; Validated
Probab=99.45 E-value=1e-12 Score=122.71 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=99.0
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|++. .+. +..+..+. ...++||+|+||..|+ +|+||.++.++++|.+. +.++
T Consensus 124 ~~~GIpvp~~~~~~~~-~~~e~~~~--~~~igyPvvvKP~~gg---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~v 197 (447)
T PRK05586 124 IKAGVPVVPGSEGEIE-NEEEALEI--AKEIGYPVMVKASAGG---GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSM 197 (447)
T ss_pred HHCCCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEECCCC---CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 45789999874 343 22222222 3468999999998854 57899999999998542 3579
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
++||||+ +++.+.+.|+++. +.....+... + +..+... ...+....++++. .+.+++
T Consensus 198 ivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~------~------~~~~~~~--~~~~p~~~l~~~~-----~~~l~~ 257 (447)
T PRK05586 198 YIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS------L------QRRNQKV--LEEAPSPVMTEEL-----RKKMGE 257 (447)
T ss_pred EEEecCC-CCeEEEEEEEECCCCCEEEEeceecc------e------Eecccce--EEEcCCCCCCHHH-----HHHHHH
Confidence 9999997 3588999888753 3322111000 0 0000000 0000001122211 457999
Q ss_pred HHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 155 LAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 155 lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
+|.++.++||+.-.+ +|++++. +| ++||+|||..||-.
T Consensus 258 ~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 258 IAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred HHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 999999999999665 9999985 34 69999999998744
No 36
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.44 E-value=1.4e-12 Score=119.10 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=102.1
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEee
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQEF 82 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQef 82 (220)
..||++|++..+++. +++.+. ...++||+|+||..+. +|.++.++.++++|.+. ..++++|||
T Consensus 124 ~~gip~p~~~~~~s~-~~l~~~--~~~~g~P~VvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEef 197 (395)
T PRK09288 124 ELGLPTSPYRFADSL-EELRAA--VEEIGYPCVVKPVMSS---SGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEF 197 (395)
T ss_pred hCCCCCCCceEECCH-HHHHHH--HHhcCCCEEEEeCCCc---CCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEe
Confidence 579999999999632 223332 2468999999998643 57899999999998652 258999999
Q ss_pred cCCCCeEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 027695 83 VNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
|+ .+.++.|.++.+. .+.. ....+. .. .+.+. . ...++.++++. .++++++|.++
T Consensus 198 i~-~~~E~sv~~~~~~~~~~~~~--~~~~~~-----~~-~~~~~--~------~~~p~~l~~~~-----~~~i~~~~~~~ 255 (395)
T PRK09288 198 ID-FDYEITLLTVRAVDGGTHFC--APIGHR-----QE-DGDYR--E------SWQPQPMSPAA-----LEEAQEIAKKV 255 (395)
T ss_pred cC-CCEEEEEEEEEcCCCCEEEe--cCcccE-----EE-CCEEE--E------EECCCCCCHHH-----HHHHHHHHHHH
Confidence 96 4789999887432 2221 011110 00 11111 0 00122233222 45688999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027695 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
.++||.. .+.+|++++++ .+||+|+|.-||-.+....
T Consensus 256 ~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~~ 293 (395)
T PRK09288 256 TDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVTL 293 (395)
T ss_pred HHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCcceee
Confidence 9999965 56799999752 4899999999997665443
No 37
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.43 E-value=1.4e-12 Score=122.53 Aligned_cols=152 Identities=22% Similarity=0.289 Sum_probs=100.5
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+.+ ..+..+. ...++||+|+||..|+ +|.||.++.++++|.+. +.++
T Consensus 127 ~~~GIp~~p~~~~~v~~-~~e~~~~--~~~igyPvvvKp~~gg---gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v 200 (467)
T PRK12833 127 RRAGVPTVPGSDGVVAS-LDAALEV--AARIGYPLMIKAAAGG---GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGV 200 (467)
T ss_pred HHcCCCCCCCcCcCcCC-HHHHHHH--HHHhCCCEEEEECCCC---CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 35789998775 4442 1222222 3468999999999864 47899999999998652 4579
Q ss_pred EEEeecCCCCeEEEEEEECCe--EE-EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA--IK-VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~--v~-~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
++||||+. |+.+-|-|+||. ++ ...|. ++... ....+.. +....++++. .+.+.
T Consensus 201 lvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r~-------~~ki~e~---------~p~~~l~~~~-----~~~l~ 258 (467)
T PRK12833 201 YLERFIAR-ARHIEVQILGDGERVVHLFERECSLQRR-------RQKILEE---------APSPSLTPAQ-----RDALC 258 (467)
T ss_pred EEEecCCC-CEEEEEEEEeCCCcEEEEEEeecccccC-------CccEEEE---------CCCCCCCHHH-----HHHHH
Confidence 99999973 799999999874 22 22232 11100 0001100 0011222222 46799
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++|.++.++||+.-.+ +|++++..+| ++|++|||.-++-
T Consensus 259 ~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~ 298 (467)
T PRK12833 259 ASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQV 298 (467)
T ss_pred HHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCc
Confidence 9999999999999554 9999985344 6999999999874
No 38
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.42 E-value=1.3e-12 Score=106.38 Aligned_cols=141 Identities=25% Similarity=0.363 Sum_probs=69.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-CCCeEEEeecCCCCeEEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-EPPLVLQEFVNHGGVLFK 91 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-~~p~vvQefI~h~g~~~K 91 (220)
...+|++|.+...... ....+|+|+||..|+ +|.++.++.+.+++... ..-.++|||| .|..+.
T Consensus 12 ~~~gi~~P~~~~~~~~----------~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~~~~~i~Qe~i--~G~~~S 76 (161)
T PF02655_consen 12 KELGIPVPTTLRDSEP----------EPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFLNKLRIVQEFI--EGEPYS 76 (161)
T ss_dssp TTT-S--------EES----------S--SSSEEEEESS----------B--SS--TTE-------EEEE-----SEEEE
T ss_pred HccCCCCCCccccccc----------cccCCcEEEEeCCCC---CCCCeEEECCchhhccccccceEEeeee--CCEEeE
Confidence 4568999944444321 234899999999975 56689999999888754 3334999999 589999
Q ss_pred EEEECCe----EEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCc
Q 027695 92 VYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLR 166 (220)
Q Consensus 92 V~ViG~~----v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l-Gl~ 166 (220)
+.++.+. +.++-|..+..- ...|.| +++.. +.. .+..+++.++|.++.++| ||.
T Consensus 77 v~~l~~~~~~~~l~~~rq~i~~~--------~~~~~~----~G~~~--~~~-------~~~~~~~~~~~~~i~~~l~gl~ 135 (161)
T PF02655_consen 77 VSFLASGGGARLLGVNRQLIGND--------DGRFRY----CGGIV--PAD-------TPLKEEIIELARRIAEALPGLR 135 (161)
T ss_dssp EEEEE-SSSEEEEEEEEEEEET------------TEE----EEEEE--S-----------HHHHHHHHHHHHHTTSTT--
T ss_pred EEEEEeCCceEEEEechHhhccc--------cceeee----ccccc--ccC-------CchHHHHHHHHHHHHHHcCCCe
Confidence 9998543 223334432110 000111 11111 111 112577999999999999 998
Q ss_pred -eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 167 -LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 167 -l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
++|||+|+++ +++||||||.-|+
T Consensus 136 G~~giD~I~~~---~~~~viEINPR~t 159 (161)
T PF02655_consen 136 GYVGIDFILDD---GGPYVIEINPRFT 159 (161)
T ss_dssp EEEEEEEEESS----SEEEEEEESS--
T ss_pred eeEeEEEEEeC---CcEEEEEEcCCCC
Confidence 8899999975 2589999997664
No 39
>PRK06849 hypothetical protein; Provisional
Probab=99.42 E-value=5.5e-12 Score=115.46 Aligned_cols=145 Identities=19% Similarity=0.327 Sum_probs=95.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc----CCCeEEEeecCCCCe
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----EPPLVLQEFVNHGGV 88 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~----~~p~vvQefI~h~g~ 88 (220)
+..||++|++..+++. ++.. .+.....+||+|+||..++ +++++.++.+++.++.+ ..|+++||||+ |.
T Consensus 125 ~~~GipvP~t~~v~~~-~~l~-~~~~~~~~~P~vlKP~~~~---~~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~--G~ 197 (389)
T PRK06849 125 RSLGLSVPKTYLITDP-EAIR-NFMFKTPHTPYVLKPIYSR---FVRRVDLLPKEAALKELPISKDNPWVMQEFIQ--GK 197 (389)
T ss_pred HHcCCCCCCEEEeCCH-HHHH-HHhhcCCCCcEEEEeCccc---CCCeEEEecCHHHhcccccCCCCCeEEEEEec--CC
Confidence 3568999999999632 2222 2222224899999999865 35678888998887765 34799999997 55
Q ss_pred EEE--EEEECCeEEEE-EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 027695 89 LFK--VYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 165 (220)
Q Consensus 89 ~~K--V~ViG~~v~~~-~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl 165 (220)
++- .++.++++.+. .+.. .. ....+. . ....+ . ..+++++++.++.++||+
T Consensus 198 e~~~~~~~~~G~v~~~~~~~~--~~-----~~~~~~-----------~---~~~~~----~-~~~~l~~~~~~~~~~l~~ 251 (389)
T PRK06849 198 EYCSYSIVRSGELRAHSCYKP--EY-----CAGSGA-----------Q---IAFQP----I-NHPRIEEFVTHFVKELNY 251 (389)
T ss_pred eEEEEEEEECCEEEEEEEeec--cc-----cCCCCc-----------e---eEeEE----C-CcHHHHHHHHHHHHhcCc
Confidence 544 44557776543 2111 10 000000 0 00001 0 135689999999999999
Q ss_pred c-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 166 R-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 166 ~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+ .++||++.+. +| ++|++|+|.-++
T Consensus 252 ~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 252 TGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 9 7789999874 44 699999998877
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.37 E-value=9.7e-12 Score=115.83 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=97.0
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
...||++|.+. .++ +..+..+. ...++||+|+||..|+ +|+||.++.|+++|.+. +.++
T Consensus 126 ~~~gIp~pp~~~~~~~-~~~~~~~~--~~~~g~PvvvKP~~g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~v 199 (445)
T PRK08462 126 KRAGVPVIPGSDGALK-SYEEAKKI--AKEIGYPVILKAAAGG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTM 199 (445)
T ss_pred HHCCCCCCCCcccccC-CHHHHHHH--HHHcCCCEEEEeCCCC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcE
Confidence 35789998865 233 21122222 3458999999999864 47899999999998642 2469
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~~-~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++||||+ +++.+.+.++++. ++.. .|. +... . ....+. ......+++.. .+++
T Consensus 200 lvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~-----~--~~~~~~---------~~p~~~l~~~~-----~~~i 257 (445)
T PRK08462 200 YMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQR-----R--HQKLIE---------ESPAVVLDEKT-----RERL 257 (445)
T ss_pred EEeccCC-CCeEEEEEEEECCCCCEEEEEecccccee-----c--ccceEE---------EcCCCCCCHHH-----HHHH
Confidence 9999997 4688999888653 2222 111 1100 0 000000 00011122221 4679
Q ss_pred HHHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 153 ERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
.++|.++.++||+.-++ +|++++.+ + ++||+|||.-+|-
T Consensus 258 ~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR~~~ 297 (445)
T PRK08462 258 HETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTRLQV 297 (445)
T ss_pred HHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECCcCc
Confidence 99999999999998655 99999853 3 5899999999974
No 41
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.37 E-value=1.6e-11 Score=112.67 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=93.2
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEee
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEF 82 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQef 82 (220)
...+|||+|++..+.+. .+..+.+ ..++||+|+||..+ + +|.+|.++.|.+++... +.++++|||
T Consensus 75 l~~~gIptp~~~~~~~~-~ea~~~~--~~~g~PvVvKp~~~--~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~ 148 (379)
T PRK13790 75 MEKYNIPTADYKEVERK-KDALTYI--ENCELPVVVKKDGL--A-AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETF 148 (379)
T ss_pred HHHCCCCCCCEEEECCH-HHHHHHH--HhcCCCEEEEeCCC--C-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 34678999999888632 2232322 36899999999864 2 57899999999988642 247999999
Q ss_pred cCCCCeEEEEEEE--CCeEEEEEEecCCCCcccccccCCceeeecCccc-cc--ccCCCCCCCccccCCCChHHHHHHHH
Q 027695 83 VNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC-AA--ASADDADLDPCVAELPPRPLLERLAK 157 (220)
Q Consensus 83 I~h~g~~~KV~Vi--G~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~lA~ 157 (220)
|. |.++.|.++ |+.++. ++-+.... ...|+....+. ++ .......++++. .+...++++.
T Consensus 149 i~--G~E~sv~~~~~g~~~~~-----~~~~~~~~----kr~~~~d~g~~tgg~~~~~p~~~l~~~~----~~~~~~~i~~ 213 (379)
T PRK13790 149 LE--GEEFSLMTFVNGDLAVP-----FDCIAQDH----KRAFDHDEGPNTGGMGAYCPVPHISDDV----LKLTNETIAQ 213 (379)
T ss_pred cc--CceEEEEEEeeCCEEEe-----cccccccc----cccccCCCCCcCCCCceEeeCCCCCHHH----HHHHHHHHHH
Confidence 95 678887766 433221 10000000 00111111100 00 000011122111 0122378888
Q ss_pred HHHHHh---CCceeE---EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 158 ELRRQL---GLRLFN---LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 158 ~l~~~l---Gl~l~G---~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++.++| |+.++| +|++++. +| +||+|+|..||-
T Consensus 214 ~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G~ 252 (379)
T PRK13790 214 PIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccCC
Confidence 888888 667666 5999974 33 899999999875
No 42
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.35 E-value=8.7e-12 Score=118.38 Aligned_cols=152 Identities=11% Similarity=0.192 Sum_probs=100.2
Q ss_pred CCCCCCCCcEEEE-ecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027695 13 SYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
...|||+|.+... -.+..+..+ ....++||+|+||..|+ +|+||.++.++++|... +.+++
T Consensus 124 ~~~GVpv~p~~~~~v~~~~e~~~--~a~~igyPvvIKp~~Gg---GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~ 198 (499)
T PRK08654 124 KKAGVPVLPGTEEGIEDIEEAKE--IAEEIGYPVIIKASAGG---GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVF 198 (499)
T ss_pred HHcCcCCCCCcCcCCCCHHHHHH--HHHHhCCCEEEEeCCCC---CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 4578999877653 112222222 23468999999999865 57899999999998642 35799
Q ss_pred EEeecCCCCeEEEEEEECCe---EE-EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027695 79 LQEFVNHGGVLFKVYIVGEA---IK-VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~~---v~-~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
+|+||+ +++.+.|-|++|. +. ...|. |+..- +.+ ....+....++++. .+.+.
T Consensus 199 vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqrr--------------~qk--~ie~~Pa~~l~~~~-----~~~l~ 256 (499)
T PRK08654 199 IEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQRR--------------HQK--LIEEAPSPIMTPEL-----RERMG 256 (499)
T ss_pred EEeCCC-CCcEEEEEEEEcCCCCEEEEeeeccccccC--------------ccc--eEEECCCCCCCHHH-----HHHHH
Confidence 999997 4688999888764 22 22332 21100 000 00000011133322 56799
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
++|.++.+++|+.-.| ||++.++ + ++|++|||.-++..
T Consensus 257 ~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlqve 295 (499)
T PRK08654 257 EAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQVE 295 (499)
T ss_pred HHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCCCC
Confidence 9999999999999777 9999963 3 59999999998743
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=99.35 E-value=9.5e-12 Score=127.52 Aligned_cols=153 Identities=14% Similarity=0.253 Sum_probs=101.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
...||++|.+..+++. .+..+ ....++||+|+||..++ +|.+|.++.++++|..+ +.++++|+||
T Consensus 711 ~~~GIp~p~~~~v~s~-eea~~--~a~~iGyPvvVKP~~g~---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI 784 (1102)
T PLN02735 711 NELKIEQPKGGIARSE-ADALA--IAKRIGYPVVVRPSYVL---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYL 784 (1102)
T ss_pred HHcCCCCCCeeEeCCH-HHHHH--HHHhcCCCeEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3578999999888632 22222 23468999999998854 46799999999999752 3479999999
Q ss_pred CCCCeEEEEEEECC---eEEE-EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGE---AIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~---~v~~-~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+ +|+++-|-+++| .+.. ..+.-... .+....... .......++++. .++++++|.++
T Consensus 785 ~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~gvhsGds~----~~~P~~~L~~e~-----~~~i~~~a~ki 845 (1102)
T PLN02735 785 S-DATEIDVDALADSEGNVVIGGIMEHIEQ---------AGVHSGDSA----CSLPTQTIPSSC-----LATIRDWTTKL 845 (1102)
T ss_pred C-CcEEEEEEEEECCCCCEEEecceEeeec---------cCccCCCcc----EEecCCCCCHHH-----HHHHHHHHHHH
Confidence 6 489999999975 2321 11111000 010000000 000011232222 46789999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++||+. ++.+|++++.+ + ++||+|||..||
T Consensus 846 ~~~L~~~G~~~vqf~v~~d-g-~~yviEiNpR~s 877 (1102)
T PLN02735 846 AKRLNVCGLMNCQYAITPS-G-EVYIIEANPRAS 877 (1102)
T ss_pred HHHcCCcceeeEEEEEcCC-C-cEEEEEEeCCCC
Confidence 9999998 55699999642 3 599999999998
No 44
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.35 E-value=1.3e-11 Score=126.10 Aligned_cols=151 Identities=15% Similarity=0.302 Sum_probs=98.9
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
...||++|++..+++ .++..+. ...++||+|+||..+. +|.+|.++.|+++|..+ +.|+++||||
T Consensus 678 ~~~GIp~P~~~~v~s-~ee~~~~--~~~igyPvIVKP~~~~---Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI 751 (1050)
T TIGR01369 678 DELGIPQPKWKTATS-VEEAVEF--ASEIGYPVLVRPSYVL---GGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYL 751 (1050)
T ss_pred HHCCcCCCCeEEECC-HHHHHHH--HHhcCCCEEEEECCCC---CCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecC
Confidence 457899999999863 2223322 3468999999998854 46899999999998752 4589999999
Q ss_pred CCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+ +|+++-|-++ |+++++. ++.-.+ .+. +... .........+++. ..+++++++.++
T Consensus 752 ~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~----------~gv---~sGd-s~~~~P~~~l~~~-----~~~~i~~~a~ki 811 (1050)
T TIGR01369 752 E-DAVEVDVDAVSDGEEVLIPGIMEHIEE----------AGV---HSGD-STCVLPPQTLSAE-----IVDRIKDIVRKI 811 (1050)
T ss_pred C-CCeEEEEEEEEeCCEEEEEEEEEeecc----------cCC---cCCC-ceEEecCCCCCHH-----HHHHHHHHHHHH
Confidence 6 3777666555 6666542 221100 000 0000 0000001122221 135799999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++||+. ++++|+++++ + .+||||||..++
T Consensus 812 ~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 812 AKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred HHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 9999997 6679999974 2 599999999986
No 45
>PRK07206 hypothetical protein; Provisional
Probab=99.34 E-value=2.9e-11 Score=111.20 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=100.2
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCC---cEEEeecccCCCCccccceeeeChhhhhcc--------------CC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTL---PLVAKPLVADGSAKSHELSLAYDQYSLKKL--------------EP 75 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~---P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~--------------~~ 75 (220)
..+||++|++..+++ .++..+.+ ..++| |+|+||..|+ +|.++.++.|.++|+.. ..
T Consensus 117 ~~~gi~~p~~~~~~~-~~e~~~~~--~~~g~~~~P~VvKP~~g~---gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~ 190 (416)
T PRK07206 117 AEAGLPAARQINTAD-WEEAEAWL--RENGLIDRPVVIKPLESA---GSDGVFICPAKGDWKHAFNAILGKANKLGLVNE 190 (416)
T ss_pred HHcCCCcccEEecCC-HHHHHHHH--HhcCCCCCCEEEeCCCCC---CCCCEEEeCCHHHHHHHHHHHHhccccCCCCCC
Confidence 457899999998863 22333333 34556 9999999864 56799999999998652 24
Q ss_pred CeEEEeecCCCCeEEEEEEE--CCeEEE--EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHH
Q 027695 76 PLVLQEFVNHGGVLFKVYIV--GEAIKV--VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPL 151 (220)
Q Consensus 76 p~vvQefI~h~g~~~KV~Vi--G~~v~~--~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (220)
++++||||+ |.+|.|-++ ++++.. .++..-..... ....+.+.. .-|. ..+..++
T Consensus 191 ~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------~~p~--~~~~~~~ 249 (416)
T PRK07206 191 TVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLNS-----GSTVYDYDE------------FLDY--SEPEYQE 249 (416)
T ss_pred eEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccCC-----CCceecccc------------cCCc--cHHHHHH
Confidence 799999995 788876555 566543 23321111100 000111000 0010 0112467
Q ss_pred HHHHHHHHHHHhCCc--eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC
Q 027695 152 LERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 198 (220)
Q Consensus 152 ~~~lA~~l~~~lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~ 198 (220)
+.+++.++.++||+. .+.+|++++. +| +++||||.-||=...+.
T Consensus 250 i~~~~~~~~~alg~~~G~~h~E~~~~~-~g--~~liEin~R~~G~~~~~ 295 (416)
T PRK07206 250 LVDYTKQALDALGIKNGPAHAEVMLTA-DG--PRLIEIGARLDGGLHPD 295 (416)
T ss_pred HHHHHHHHHHHcCCccCCceEEEEEcC-CC--CEEEEECCccCCCCccc
Confidence 899999999999994 6789999975 33 68999999998555553
No 46
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.33 E-value=2.7e-11 Score=114.29 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=98.3
Q ss_pred CCCCCCCCcEEE-Ee-cCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQLV-IE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~~-i~-~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
...||++|.+.. +. .+..+..+. ...++||+|+||..|+ +|.||.++.++++|... +.++
T Consensus 123 ~~~gIpvpp~~~~~~~~~~~~~~~~--~~~igyPvvvKP~~gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~v 197 (478)
T PRK08463 123 KKNGIPIVPGTEKLNSESMEEIKIF--ARKIGYPVILKASGGG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEV 197 (478)
T ss_pred HHcCCCCCCCccccCCCCHHHHHHH--HHHhCCCEEEEeCCCC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 357899976443 32 121222222 3468999999999864 57899999999998542 3579
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~-~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++|+||+ +++.+.+-|+++. +.. ..|- +... . +.. ....+....++++. .+.+
T Consensus 198 lvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~~-------------~-~~~--~ie~~P~~~l~~~~-----~~~i 255 (478)
T PRK08463 198 FMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQR-------------R-HQK--VIEIAPCPSISDNL-----RKTM 255 (478)
T ss_pred EEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCcccc-------------c-cCc--eEEECCCCCCCHHH-----HHHH
Confidence 9999997 4688888888664 322 2231 1100 0 000 00000011233322 4678
Q ss_pred HHHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 153 ERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
+++|.++.++||+.-+| +|++++. ++ ++||+|||.-++-.
T Consensus 256 ~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~~~~ 296 (478)
T PRK08463 256 GVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRIQVE 296 (478)
T ss_pred HHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCCC
Confidence 89999999999999776 9999985 33 69999999888754
No 47
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.33 E-value=2e-11 Score=113.98 Aligned_cols=152 Identities=13% Similarity=0.201 Sum_probs=96.6
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .++ +..+..+ ....++||+|+||..++ +|++|.++.++++|..+ ..++
T Consensus 124 ~~~gip~pp~~~~~~~-~~~e~~~--~~~~ig~PvvvKP~~g~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~v 197 (449)
T TIGR00514 124 KKAGVPCVPGSDGLVE-DEEENVR--IAKRIGYPVIIKATAGG---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGV 197 (449)
T ss_pred HHCCCCCCCCcccCcC-CHHHHHH--HHHHhCCCEEEEeCCCC---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 35789998764 333 2222222 23468999999999864 46899999999998652 2479
Q ss_pred EEEeecCCCCeEEEEEEECC---eEEEEE-Ee-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGE---AIKVVR-RF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~---~v~~~~-R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++||||+ +++.+-+-++++ ++.... +- +.... ...... ......++++ ..+++
T Consensus 198 lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~-------~~~~~~---------~~p~~~l~~~-----~~~~i 255 (449)
T TIGR00514 198 YIEKYIE-NPRHVEIQVLADKYGNAIYLGERDCSIQRR-------HQKLLE---------EAPSPALTPE-----LRRKM 255 (449)
T ss_pred EEEECCC-CCeEEEEEEEEcCCCCEEEEeccccCceec-------ccceEE---------ECCCCCCCHH-----HHHHH
Confidence 9999996 468888888865 332221 10 00000 000000 0001122222 14679
Q ss_pred HHHHHHHHHHhCCcee-EEEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 153 ERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~-G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
+++|.++.++||+.-. .+|++++. +| .+||+|||.-++-.
T Consensus 256 ~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~~~ 296 (449)
T TIGR00514 256 GDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQVE 296 (449)
T ss_pred HHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCCCC
Confidence 9999999999999844 49999984 23 58999999988743
No 48
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.32 E-value=2.4e-11 Score=124.42 Aligned_cols=150 Identities=17% Similarity=0.284 Sum_probs=96.3
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
...||++|++..+++. .+..+. ...++||+|+||..+. +|.+|.++.|+++|..+ +.++++||||
T Consensus 678 ~~~GIp~P~~~~~~s~-ee~~~~--~~~igyPvvVKP~~~~---Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI 751 (1066)
T PRK05294 678 EKLGIPQPPNGTATSV-EEALEV--AEEIGYPVLVRPSYVL---GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFL 751 (1066)
T ss_pred HHcCcCCCCeEEECCH-HHHHHH--HHhcCCCeEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 4578999999998632 223232 3468999999998853 57899999999998752 4589999999
Q ss_pred CCCCeEEEEEEE--CCeEEE--EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 027695 84 NHGGVLFKVYIV--GEAIKV--VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKE 158 (220)
Q Consensus 84 ~h~g~~~KV~Vi--G~~v~~--~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~ 158 (220)
+.. +.+-|-++ |+.+.+ .++. ....+..++ ... ...+..++++ ..+.++++|.+
T Consensus 752 ~G~-~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-----s~~----------~~p~~~l~~~-----~~~~i~~~a~~ 810 (1066)
T PRK05294 752 EGA-IEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-----SAC----------SLPPQTLSEE-----IIEEIREYTKK 810 (1066)
T ss_pred CCC-EEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----CcE----------EecCCCCCHH-----HHHHHHHHHHH
Confidence 632 26655555 443332 1121 100000000 000 0001122221 14579999999
Q ss_pred HHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 159 LRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 159 l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+.++||+. ++++|+++++ + ++||+|||..|+
T Consensus 811 i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 811 LALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred HHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 99999996 6679999974 2 589999999886
No 49
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.32 E-value=2.4e-11 Score=114.39 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=97.7
Q ss_pred CCCCCCCCcEEE--EecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~~--i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
...||++|.+.. ++ +..+..+ ....++||+|+||..|+ +|++|.++.++++|.+. +.++
T Consensus 123 ~~~GIp~pp~~~~~~~-~~~e~~~--~~~~igyPvvvKp~~gg---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v 196 (472)
T PRK07178 123 IKAGVPVTPGSEGNLA-DLDEALA--EAERIGYPVMLKATSGG---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEV 196 (472)
T ss_pred HHCCCCCCCCcCcCCC-CHHHHHH--HHHHcCCcEEEEeCCCC---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 357899987754 32 1111222 23468999999999864 57899999999998642 3479
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEE-EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA---IKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~-~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
++|+||+ +++.+.|-|+++. +.. ..|.- . . ...+.. ....+....++++. .+.++
T Consensus 197 ~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~--s-----~------~~~~~~--~~e~~P~~~l~~~~-----~~~i~ 255 (472)
T PRK07178 197 FLEKCIV-NPKHIEVQILADSHGNVVHLFERDC--S-----I------QRRNQK--LIEIAPSPQLTPEQ-----RAYIG 255 (472)
T ss_pred EEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc--c-----e------EecCcc--eEEECCCCCCCHHH-----HHHHH
Confidence 9999996 5788888888653 222 22210 0 0 000000 00001111233322 46789
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++|.++.++||+.-.| +|++++.+ + ++|++|||.-++-
T Consensus 256 ~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl~~ 294 (472)
T PRK07178 256 DLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRVQV 294 (472)
T ss_pred HHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCcCC
Confidence 9999999999998665 99999753 3 5999999998864
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.32 E-value=2.1e-11 Score=113.53 Aligned_cols=154 Identities=12% Similarity=0.186 Sum_probs=96.9
Q ss_pred CCCCCCCCcEE--EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~--~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+. .+++ ..+..+. ...++||+|+||..|+ +|.|+.++.++++|.+. +..+
T Consensus 124 ~~~gIp~pp~~~~~v~~-~~~~~~~--~~~~g~PvvvKP~~g~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~v 197 (451)
T PRK08591 124 KKAGVPVVPGSDGPVDD-EEEALAI--AKEIGYPVIIKATAGG---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGV 197 (451)
T ss_pred HHcCCCCCCCcccccCC-HHHHHHH--HHHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 45789998763 4432 2222222 3468999999999864 47899999999998642 3569
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
++||||+ +++.+-+-+++|. +.....+.. . . +..+... ...+....++++ ..+.+.+
T Consensus 198 lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~-~-----~------~~~~~~~--~~~~p~~~l~~~-----~~~~l~~ 257 (451)
T PRK08591 198 YMEKYLE-NPRHIEIQVLADGHGNAIHLGERDC-S-----L------QRRHQKV--LEEAPSPAITEE-----LRRKIGE 257 (451)
T ss_pred EEEeCCC-CCcEEEEEEEEcCCCCEEEEecccc-c-----c------eecceeE--EEECCCCCCCHH-----HHHHHHH
Confidence 9999997 3678888787643 322211000 0 0 0000000 000001112222 2567999
Q ss_pred HHHHHHHHhCCce-eEEEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 155 LAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 155 lA~~l~~~lGl~l-~G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
+|.++.++||+.- +.+|++++. +| ++||+|||.-++-.
T Consensus 258 ~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~~ 296 (451)
T PRK08591 258 AAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQVE 296 (451)
T ss_pred HHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCcc
Confidence 9999999999994 459999985 33 69999999988743
No 51
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.31 E-value=2.6e-11 Score=122.02 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=98.6
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc--------CCCeEEEeecC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL--------EPPLVLQEFVN 84 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~--------~~p~vvQefI~ 84 (220)
..+||++|++..+++. .+..+. ...++||+|+||..|+ +|.++.++.|+++|.+. ..++++||||+
T Consensus 116 ~~~GIp~P~~~~v~~~-~e~~~~--~~~~~~PvVVKP~~g~---gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~ 189 (887)
T PRK02186 116 RDHGIDVPRTHALALR-AVALDA--LDGLTYPVVVKPRMGS---GSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE 189 (887)
T ss_pred HHcCCCCCCEEEeCCH-HHHHHH--HHhCCCCEEEEeCCCC---CCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc
Confidence 4678999999998632 223332 2468999999999864 56789999999988652 46899999996
Q ss_pred CCCeEEEEEEE--CCeE--EEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 85 HGGVLFKVYIV--GEAI--KVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 85 h~g~~~KV~Vi--G~~v--~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
|.+|-|-++ ++.+ ...+++.... ...|- .. +. ..+..+++. ..+.+.+++.++.
T Consensus 190 --G~E~sVe~i~~~g~~~i~~i~~k~~~~---------~~~~v-e~---g~--~~P~~l~~~-----~~~~l~~~~~~~l 247 (887)
T PRK02186 190 --GDEYSVETLTVARGHQVLGITRKHLGP---------PPHFV-EI---GH--DFPAPLSAP-----QRERIVRTVLRAL 247 (887)
T ss_pred --CCcEEEEEEEECCcEEEEEEEeeecCC---------CCCeE-Ee---cc--ccCCCCCHH-----HHHHHHHHHHHHH
Confidence 667766554 4443 2334443210 00010 00 00 012222221 2467899999999
Q ss_pred HHhCCc--eeEEEEEEeCCCCCeEEEEEecCCCCC
Q 027695 161 RQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 161 ~~lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++||+. .+.+|+++++ + .+||||||.-+|=
T Consensus 248 ~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~~G 279 (887)
T PRK02186 248 DAVGYAFGPAHTELRVRG-D--TVVIIEINPRLAG 279 (887)
T ss_pred HHcCCCcCceEEEEEEEC-C--CEEEEEECCCCCC
Confidence 999994 6789999975 2 4899999998763
No 52
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.30 E-value=4.6e-11 Score=111.70 Aligned_cols=176 Identities=12% Similarity=0.084 Sum_probs=101.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+|||||++..+++ ..+..+.+ ..++||+|+||..+ + +|.||.++.+++++.+. ..++++
T Consensus 111 ~~~GIptp~~~~~~~-~~e~~~~~--~~~g~PvVVKp~~~--~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlI 184 (434)
T PLN02257 111 DKYKIPTAKYETFTD-PAAAKKYI--KEQGAPIVVKADGL--A-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVV 184 (434)
T ss_pred HHcCCCCCCeEEeCC-HHHHHHHH--HHcCCCEEEEcCCC--C-CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEE
Confidence 467899999998853 22233322 46899999999853 2 57899999999887531 247999
Q ss_pred EeecCCCCeEEEEEEECC-e-EEEEEEecCCCCcccccccCCceeeecCccccc---ccCCCCCCCccccCCCChHH-HH
Q 027695 80 QEFVNHGGVLFKVYIVGE-A-IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA---ASADDADLDPCVAELPPRPL-LE 153 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~-~-v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~ 153 (220)
||||+ |+++.|.++.| + ++... .+. ....+|+++..+..+ ..+....++++. .++ .+
T Consensus 185 Eefi~--G~E~Sv~~~~dG~~~~pl~----~~~------dhkr~~d~d~g~ntggmg~~sp~p~l~~~~-----~~~i~~ 247 (434)
T PLN02257 185 EEFLD--GEEASFFALVDGENAIPLE----SAQ------DHKRVGDGDTGPNTGGMGAYSPAPVLTPEL-----ESKVME 247 (434)
T ss_pred EECCC--CCEEEEEEEECCCcEEEEE----eee------ecccccCCCCCCCCCCCeeEecCCCCCHHH-----HHHHHH
Confidence 99995 88999977633 2 22111 110 011244444433211 111000121111 121 23
Q ss_pred HHHH---HHHHHhCCceeE---EEEEEeCCCCCeEEEEEecCCCCCCCCCC----chhHHHHHHHHHHh
Q 027695 154 RLAK---ELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYGKMPE----YEHIFTDFLLSLTQ 212 (220)
Q Consensus 154 ~lA~---~l~~~lGl~l~G---~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~----~~~~l~~~i~~~~~ 212 (220)
+++. +..++.|+.+.| +|++++..++ .+||+|+|..||...-.. ...-|.+.+.+...
T Consensus 248 ~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~ 315 (434)
T PLN02257 248 TIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACK 315 (434)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHc
Confidence 3333 334577888666 8999972223 489999999999753322 23344555555443
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.29 E-value=2.6e-11 Score=124.44 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=100.2
Q ss_pred CCCCCCCCcEEEE-ecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027695 13 SYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i-~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
...||++|.+... -.+..+..+. ...++||+|+||..|+ +|++|.++.++++|++. +.+++
T Consensus 124 ~~~GVPvpp~t~~~v~~~eea~~~--ae~iGyPvIVKP~~GG---GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vl 198 (1143)
T TIGR01235 124 IKAGVPVVPGTDGPPETMEEVLDF--AAAIGYPVIIKASWGG---GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVY 198 (1143)
T ss_pred HHcCCCCCCCcccCcCCHHHHHHH--HHHcCCCEEEEECCCC---CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 3578999887532 1122222222 3468999999998864 47899999999998642 35799
Q ss_pred EEeecCCCCeEEEEEEECCe---E-EEEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027695 79 LQEFVNHGGVLFKVYIVGEA---I-KVVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~~---v-~~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
+||||+ +++.+.|-++||. + +...|- |... .+.+. ...+....++++. .+++.
T Consensus 199 IEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr--------------r~qk~--ie~aPa~~L~~e~-----r~~I~ 256 (1143)
T TIGR01235 199 VEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR--------------RHQKV--VEVAPAPYLSREV-----RDEIA 256 (1143)
T ss_pred EEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc--------------cCceE--EEEeCCCCCCHHH-----HHHHH
Confidence 999996 4799999999775 2 233342 2110 00000 0000011222222 46799
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++|.++.+++|+.-+| |||+++.+ + ++|++|||.-++.
T Consensus 257 ~~A~kla~aLgy~G~gtVEFlvd~d-g-~~yfIEVNPRiqv 295 (1143)
T TIGR01235 257 EYAVKLAKAVNYINAGTVEFLVDND-G-KFYFIEVNPRIQV 295 (1143)
T ss_pred HHHHHHHHHcCCcceEEEEEEEeCC-C-cEEEEEeecCCCc
Confidence 9999999999998666 99999853 3 6999999999864
No 54
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.28 E-value=4.7e-11 Score=122.30 Aligned_cols=150 Identities=15% Similarity=0.295 Sum_probs=99.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCC
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNH 85 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h 85 (220)
...||++|++..+++. ++..+. ...++||+|+||..+. ++.+|.++.++++|+.+ ..|+++||||
T Consensus 679 ~~~GIp~P~~~~~~s~-ee~~~~--~~~igyPvVVKP~~~~---Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI-- 750 (1068)
T PRK12815 679 DELGLPHVPGLTATDE-EEAFAF--AKRIGYPVLIRPSYVI---GGQGMAVVYDEPALEAYLAENASQLYPILIDQFI-- 750 (1068)
T ss_pred HHcCcCCCCeEEeCCH-HHHHHH--HHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEee--
Confidence 3578999999988632 222222 3468999999998854 57899999999998652 4689999999
Q ss_pred CCeEEEEEEECC--eEEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHH
Q 027695 86 GGVLFKVYIVGE--AIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR 161 (220)
Q Consensus 86 ~g~~~KV~ViG~--~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~ 161 (220)
.|.++-|-++.| .+.+. +... . ..|. +... ......+..++++ ..+++++++.++.+
T Consensus 751 ~G~E~~Vd~i~dg~~v~i~~i~e~~-e---------~~gv---~sGd-s~~v~pp~~l~~~-----~~~~i~~~a~ki~~ 811 (1068)
T PRK12815 751 DGKEYEVDAISDGEDVTIPGIIEHI-E---------QAGV---HSGD-SIAVLPPQSLSEE-----QQEKIRDYAIKIAK 811 (1068)
T ss_pred cCceEEEEEEEcCCceEEeeEEEEe-e---------ccCC---cCCC-eeEEECCCCCCHH-----HHHHHHHHHHHHHH
Confidence 477888887743 33221 1110 0 0010 0000 0000012222221 14679999999999
Q ss_pred HhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 162 QLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 162 ~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+||+. ++++|+++++ + .+||+|||..+|
T Consensus 812 ~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 812 KLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred HcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 99988 7789999975 2 589999999998
No 55
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.27 E-value=1.6e-11 Score=104.62 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=94.3
Q ss_pred CCCCCCCcEEEEe-cCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027695 14 YGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 14 ~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+||+|.+.... .+..+..+ ...+++||+++||..|+ ++++|.+++|+++|..+ +.++++
T Consensus 11 ~~gvp~~pg~~~~~~~~eea~~--~a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~i 85 (211)
T PF02786_consen 11 KLGVPVPPGSTVPISSVEEALE--FAEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLI 85 (211)
T ss_dssp HTT-BBSSBESSSBSSHHHHHH--HHHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEE
T ss_pred HCCCCcCCCCCCCCCCHHHHHH--HHHhcCCceEEeecccc---cccccccccchhhhhhhhhhccccCccccccceEEE
Confidence 4578888777661 12112222 23458999999999865 58899999999999752 579999
Q ss_pred EeecCCCCeEEEEEEECCe---E-EEEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHH
Q 027695 80 QEFVNHGGVLFKVYIVGEA---I-KVVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~~---v-~~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
++||. +.+.+-|=|++|. + +...|- +.+- +.+++ -..+....++++. ...+++
T Consensus 86 ek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~ds---------------i~~~P~~~L~~~~-----~~~l~~ 143 (211)
T PF02786_consen 86 EKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQDS---------------IEEAPAQTLSDEE-----RQKLRE 143 (211)
T ss_dssp EE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEEE---------------EEEES-SSS-HHH-----HHHHHH
T ss_pred eeehh-hhhhhhhhhhhccccceeeeeeecccccc-ccccc---------------eeEeeccccchHH-----HHHHHH
Confidence 99997 4588999999763 2 233443 2111 11110 0011122333322 467999
Q ss_pred HHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCC
Q 027695 155 LAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 155 lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+|.++++.+|+.-.+ |=|+++..++ ++||+|+|..-+
T Consensus 144 ~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 144 AAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp HHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred HHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 999999999999665 9999996344 899999997654
No 56
>PLN02735 carbamoyl-phosphate synthase
Probab=99.27 E-value=6.3e-11 Score=121.56 Aligned_cols=154 Identities=10% Similarity=0.176 Sum_probs=98.2
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCC-CcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEee
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEF 82 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQef 82 (220)
...||++|++..+++. .+..+. ...++ ||+|+||..+. +|.++.+++|+++|..+ +.++++|||
T Consensus 153 ~~~GIpvp~~~~v~s~-eea~~~--~~~iG~yPvVVKP~~~~---GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~ 226 (1102)
T PLN02735 153 EKIGLKTPPSGIATTL-DECFEI--AEDIGEFPLIIRPAFTL---GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKS 226 (1102)
T ss_pred HHCCCCCCCeeEeCCH-HHHHHH--HHHhCCCCEEEEeCCCC---CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4678999999998632 222222 34576 99999998854 45588999999998752 357999999
Q ss_pred cCCCCeEEEEEEECCe---EE-EEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 027695 83 VNHGGVLFKVYIVGEA---IK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKE 158 (220)
Q Consensus 83 I~h~g~~~KV~ViG~~---v~-~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~ 158 (220)
|. +.++|-|-|++|. +. ++.. -++++....+ . +... .+....+++.. .+.++++|.+
T Consensus 227 I~-G~kE~ev~Vl~D~~g~~i~v~~i---e~~dp~gvh~-G-----~s~~----vaPa~tL~~~~-----~q~l~~~A~k 287 (1102)
T PLN02735 227 LL-GWKEYELEVMRDLADNVVIICSI---ENIDPMGVHT-G-----DSIT----VAPAQTLTDKE-----YQRLRDYSVA 287 (1102)
T ss_pred cC-CCeEEEEEEEEcCCCCEEEEeeE---EEEcCCcccc-C-----CEEE----EEeCCCCCHHH-----HHHHHHHHHH
Confidence 95 2389999999762 22 1111 1111000000 0 0000 00011222221 4579999999
Q ss_pred HHHHhCCc--eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 159 LRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 159 l~~~lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+.++||+. .+.+|++++..+| ++||+|||.-+|
T Consensus 288 i~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVNPR~s 322 (1102)
T PLN02735 288 IIREIGVECGGSNVQFAVNPVDG-EVMIIEMNPRVS 322 (1102)
T ss_pred HHHHhCCCcCceEEEEEEECCCC-cEEEEEecCCCC
Confidence 99999993 7789999984334 699999996555
No 57
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.25 E-value=8e-11 Score=109.45 Aligned_cols=154 Identities=13% Similarity=0.191 Sum_probs=94.6
Q ss_pred CCCCCCCCcEEEEe-cCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027695 13 SYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
..+||++|++.... .+..+..+. ...++||+|+||..++ +|+++.++.+.++|.++ +.+++
T Consensus 124 ~~~gIp~p~~~~~~~~~~~e~~~~--~~~~~~P~VvKP~~g~---gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~l 198 (450)
T PRK06111 124 QAAGVPVVPGITTNLEDAEEAIAI--ARQIGYPVMLKASAGG---GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMY 198 (450)
T ss_pred HHCCCCCCCCcCcCcCCHHHHHHH--HHHhCCCEEEEeCCCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 45789999873321 222222222 2458999999998854 57899999999998642 34799
Q ss_pred EEeecCCCCeEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHH
Q 027695 79 LQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERL 155 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (220)
+||||+ +++.+.+.++++ ++.....+..+ +. ..+..... .+....+++. ..+.++++
T Consensus 199 vEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~~-~~-----------~~~~~~~~--~~p~~~~~~~-----~~~~i~~~ 258 (450)
T PRK06111 199 IEKYIE-DPRHIEIQLLADTHGNTVYLWERECS-VQ-----------RRHQKVIE--EAPSPFLDEE-----TRKAMGER 258 (450)
T ss_pred EEcccC-CCcEEEEEEEEcCCCCEEEEEeeccc-cc-----------ccccceEE--ecCCCCCCHH-----HHHHHHHH
Confidence 999997 346777766653 23322211100 00 00000000 0000012221 14678999
Q ss_pred HHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCC
Q 027695 156 AKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 156 A~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
|.++.++||+. .+.+|++++.+ | ++||+|||.-|+-
T Consensus 259 a~~~~~~lg~~g~~~ve~~~~~~-g-~~~viEiN~R~~~ 295 (450)
T PRK06111 259 AVQAAKAIGYTNAGTIEFLVDEQ-K-NFYFLEMNTRLQV 295 (450)
T ss_pred HHHHHHHcCCCCceeEEEEEcCC-C-CEEEEEEECCcCC
Confidence 99999999997 55699999853 3 5899999999863
No 58
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.25 E-value=3e-11 Score=99.99 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=99.0
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCCe
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGV 88 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g~ 88 (220)
..||+||.|..+.+. +++.+. ...++||+|+|+..+ |. .++|..++.+++++..+ ..++++|+||+. .+
T Consensus 3 ~~gip~~~~~~i~~~-~~l~~a--~~~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~ 76 (172)
T PF02222_consen 3 ELGIPTAPYATIDSL-EDLEEA--AESIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DR 76 (172)
T ss_dssp HTT--B-EEEEESSH-HHHHHH--HHHHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SE
T ss_pred ccCCCCCCeEEECCH-HHHHHH--HHHcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cE
Confidence 468999999999742 234443 345899999999885 34 69999999999999763 579999999985 58
Q ss_pred EEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCC
Q 027695 89 LFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGL 165 (220)
Q Consensus 89 ~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl 165 (220)
++.|.++-+ ++..+ |..-|. +..+...+. .-++.+++.. ..+++++|.++.+.|+.
T Consensus 77 EiSvivaR~~~G~~~~y--p~~en~------~~~~il~~s--------~~Pa~i~~~~-----~~~a~~ia~~i~~~l~~ 135 (172)
T PF02222_consen 77 EISVIVARDQDGEIRFY--PPVENV------HRDGILHES--------IAPARISDEV-----EEEAKEIARKIAEALDY 135 (172)
T ss_dssp EEEEEEEEETTSEEEEE--EEEEEE------EETTEEEEE--------EESCSS-HHH-----HHHHHHHHHHHHHHHTS
T ss_pred EEEEEEEEcCCCCEEEE--cCceEE------EECCEEEEE--------ECCCCCCHHH-----HHHHHHHHHHHHHHcCc
Confidence 899888832 22221 100011 111222111 1134444433 56799999999999998
Q ss_pred c-eeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027695 166 R-LFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 166 ~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
- +|++.+.+.. +|+++||.|+-.-|--.|
T Consensus 136 vGv~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 136 VGVLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp SEEEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEEEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 8 8899999986 453599999987775544
No 59
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.24 E-value=9.9e-11 Score=109.18 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=90.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+|||||++..+++ ..+..+.+ ..++||+|+||..+ .+|.|+.++.+++++... ...+++
T Consensus 117 ~~~gIpt~~~~~~~~-~~ea~~~~--~~~~~PvVVKp~~~---~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlI 190 (426)
T PRK13789 117 KEAKIPTASYKTFTE-YSSSLSYL--ESEMLPIVIKADGL---AAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVI 190 (426)
T ss_pred HHcCCCCCCeEeeCC-HHHHHHHH--HhcCCCEEEEeCCC---CCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEE
Confidence 467899999988863 22233322 35899999999853 257899999999887542 126999
Q ss_pred EeecCCCCeEEEEEEECCe--EEEEEEecCCCCcccccccCCceeeecCccccc---ccCCCC-CCCccccCCCChHHH-
Q 027695 80 QEFVNHGGVLFKVYIVGEA--IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA---ASADDA-DLDPCVAELPPRPLL- 152 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~~--v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~- 152 (220)
|||| .|+++.|.++.+. ++. +|-.. +- ...|+.+..+..+ +.+ +. .++++. .+++
T Consensus 191 EEfl--~G~E~Sv~~~~dg~~~~~-----lp~~~--d~---k~~~d~d~g~~tggmg~~~-P~p~~~~~~-----~~~i~ 252 (426)
T PRK13789 191 EEFM--EGQEASIFAISDGDSYFL-----LPAAQ--DH---KRAFDGDQGPNTGGMGAYC-PAPVITEAI-----LQKVK 252 (426)
T ss_pred EECc--CCeEEEEEEEECCCEEEE-----ccceE--ec---ccccCCCCCCCCCCceEEe-eCCCCCHHH-----HHHHH
Confidence 9999 4899999998543 221 12110 00 1112222111110 111 11 111111 1223
Q ss_pred HHHHHHHHHH---hCCce---eEEEEEEeCCCCCeEEEEEecCCCCC
Q 027695 153 ERLAKELRRQ---LGLRL---FNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 153 ~~lA~~l~~~---lGl~l---~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++++..+.++ +|+.+ +.+|++++. +| ++||+|+|..||-
T Consensus 253 ~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g-~~~vlE~n~R~Gd 297 (426)
T PRK13789 253 ERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EG-EPKVVEFNCRFGD 297 (426)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC-CEEEEEEecCCCC
Confidence 2355455544 46544 558999975 33 5899999999995
No 60
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.23 E-value=1.8e-10 Score=106.62 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=57.6
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
..+||++|++..+++. ++..+.+ ..++||+|+||..++ +|.++.++.++++|.+. ..++++
T Consensus 111 ~~~gip~p~~~~~~~~-~~~~~~~--~~~~~P~VvKP~~~~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlv 184 (420)
T PRK00885 111 ARYGIPTAAYETFTDA-EEALAYL--DEKGAPIVVKADGLA---AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVI 184 (420)
T ss_pred HHcCCCCCCeEEeCCH-HHHHHHH--HHcCCCEEEEeCCCC---CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEE
Confidence 4578999999988532 2232322 358999999998743 56799999999988541 247999
Q ss_pred EeecCCCCeEEEEEEECC
Q 027695 80 QEFVNHGGVLFKVYIVGE 97 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~ 97 (220)
||||+ |.++.|.++.+
T Consensus 185 Ee~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 185 EEFLD--GEEASFFAFVD 200 (420)
T ss_pred EEccC--CcEEEEEEEEC
Confidence 99995 79999988843
No 61
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.19 E-value=2.3e-10 Score=117.15 Aligned_cols=156 Identities=14% Similarity=0.213 Sum_probs=99.8
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----C----CCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----E----PPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~----~p~vvQefI 83 (220)
...|||+|++..+++. .+..+ ....++||+|+||..|. +|.|+.++.|+++|..+ . .++++||||
T Consensus 136 ~~~Gipvp~~~~v~s~-~e~~~--~~~~igyPvIVKP~~g~---gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I 209 (1050)
T TIGR01369 136 KEIGEPVPESEIAHSV-EEALA--AAKEIGYPVIVRPAFTL---GGTGGGIAYNREELKEIAERALSASPINQVLVEKSL 209 (1050)
T ss_pred HHCCCCCCCeeecCCH-HHHHH--HHHHhCCCeEEECCCCC---CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcc
Confidence 4578999999988632 22222 23468999999998753 57889999999998653 1 479999999
Q ss_pred CCCCeEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+ +.+++-+-|+.| ..... ++.-++.+....+ .+. . ..+ ++ .+++. ..+.++++|.++
T Consensus 210 ~-G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~-g~~-----i----~v~-Pa~tl~~~-----~~~~l~~~a~~i 270 (1050)
T TIGR01369 210 A-GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHT-GDS-----I----VVA-PSQTLTDK-----EYQMLRDASIKI 270 (1050)
T ss_pred c-CceEEEEEEEEeCCCCEEEE--eeceeccCcceec-Cce-----E----EEe-cCCCCCHH-----HHHHHHHHHHHH
Confidence 6 237888888754 22211 1111221100000 000 0 000 11 12221 135689999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 027695 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 194 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~ 194 (220)
.++||+. .+.+|++++.+++ ++||+|||..++-.
T Consensus 271 ~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~~s 305 (1050)
T TIGR01369 271 IRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVSRS 305 (1050)
T ss_pred HHHcCCcceeEEEEEEECCCC-cEEEEEeecCcCcc
Confidence 9999998 5569999985434 79999999888643
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.19 E-value=2.4e-10 Score=117.09 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=99.3
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
...||++|++..+++. .+..+. ...++||+|+||..|. +|+|+.++.++++|..+ ..++++||||
T Consensus 137 ~~~Gipvp~~~~v~s~-~e~~~~--~~~ig~PvVVKP~~g~---gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I 210 (1066)
T PRK05294 137 KKIGLPVPRSGIAHSM-EEALEV--AEEIGYPVIIRPSFTL---GGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESL 210 (1066)
T ss_pred HHCCcCCCCeeeeCCH-HHHHHH--HHHcCCCeEEEcCCCC---CCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcc
Confidence 4578999999999632 223332 3468999999998743 57799999999998652 2479999999
Q ss_pred CCCCeEEEEEEECC---eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~---~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+ +.+++-+-|+.| ++..+. +..++++....+ .+.. ..+ ++ .+++. ..+.++++|.++
T Consensus 211 ~-G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~gih~-g~~~---------~~~-Pa~~l~~~-----~~~~l~~~a~ki 271 (1066)
T PRK05294 211 L-GWKEYEYEVMRDKNDNCIIVC--SIENIDPMGVHT-GDSI---------TVA-PAQTLTDK-----EYQMLRDASIAI 271 (1066)
T ss_pred c-CceEEEEEEEEcCCCCEEEEe--eeeeccccceec-CCeE---------EEe-CCCCCCHH-----HHHHHHHHHHHH
Confidence 6 227888888744 222221 111111100000 0000 000 11 12211 145689999999
Q ss_pred HHHhCCc--eeEEEEEEeCCCCCeEEEEEecCCCCC
Q 027695 160 RRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 160 ~~~lGl~--l~G~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
.++||+. .+.||+.++..++ ++||+|+|.-|+-
T Consensus 272 ~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~~ 306 (1066)
T PRK05294 272 IREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVSR 306 (1066)
T ss_pred HHHcCCccCceEEEEEEECCCC-cEEEEEeecCCCc
Confidence 9999998 6679999985444 6999999977763
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.16 E-value=3.1e-10 Score=116.82 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=97.6
Q ss_pred CCCCCCCCcEEE--EecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCe
Q 027695 13 SYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPL 77 (220)
Q Consensus 13 ~~~~I~~P~~~~--i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~ 77 (220)
..+||++|.+.. +. +.++..+ ....++||+|+||..|+ +|++|.++.++++|.+. +.++
T Consensus 128 ~~~GVPv~P~~~~~v~-s~eea~~--~a~~iGyPvVVKP~~Gg---GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~v 201 (1146)
T PRK12999 128 IKAGVPVIPGSEGPID-DIEEALE--FAEEIGYPIMLKASAGG---GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEV 201 (1146)
T ss_pred HHCCCCCCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECCCC---CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 357899876554 33 2222222 23468999999999865 57899999999998642 3579
Q ss_pred EEEeecCCCCeEEEEEEECCe---EEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHH
Q 027695 78 VLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLL 152 (220)
Q Consensus 78 vvQefI~h~g~~~KV~ViG~~---v~~-~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++||||+ +++.+.|-+++|. ++. ..|- |+.- . +.+. -..+....++++ ..+.+
T Consensus 202 lVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvqr-------------r-~qk~--ie~aP~~~L~~~-----~~~~l 259 (1146)
T PRK12999 202 YLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQR-------------R-HQKV--VEIAPAPGLSEE-----LRERI 259 (1146)
T ss_pred EEecCCC-CCeEEEEEEEEECCCCEEEEEccccceee-------------c-CccE--EEEcCCCCCCHH-----HHHHH
Confidence 9999997 4688888888653 222 2221 1100 0 0000 000001122222 14678
Q ss_pred HHHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 153 ERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
.++|.++.+++|+.-.| +|++++.+ + ++|++|||..++.
T Consensus 260 ~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqv 299 (1146)
T PRK12999 260 CEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQV 299 (1146)
T ss_pred HHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCC
Confidence 99999999999998766 99999863 3 5999999988864
No 64
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.13 E-value=8.6e-10 Score=114.04 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=98.2
Q ss_pred CCCCCCCCc-EEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027695 13 SYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~-~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
..+||++|. +.++++ .++..+. ...++||+|+||..++ +|.+|.++.++++|.+. +.+++
T Consensus 123 ~~~GVPt~p~~~lv~s-~dea~~~--a~~igyPvVVKP~~gg---GG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vl 196 (1201)
T TIGR02712 123 EAAGVPLLPGTGLLSS-LDEALEA--AKEIGYPVMLKSTAGG---GGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVF 196 (1201)
T ss_pred HHCCCCCCCceeecCC-HHHHHHH--HHhcCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 357899855 545542 2222222 3468999999999864 47899999999998631 34799
Q ss_pred EEeecCCCCeEEEEEEECC---eEEEEE-Ee-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027695 79 LQEFVNHGGVLFKVYIVGE---AIKVVR-RF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~---~v~~~~-R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
+||||+ +++.+.|.+++| ++.... |- +... .+.... . ......++++ ..+++.
T Consensus 197 VEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr-------~~~k~v-----e----e~Pap~l~~~-----~~~~l~ 254 (1201)
T TIGR02712 197 LERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR-------RNQKVV-----E----ETPAPNLPPE-----TRQALL 254 (1201)
T ss_pred EEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe-------cCccEE-----E----EcCCCCCCHH-----HHHHHH
Confidence 999997 479999988865 333322 21 1100 000000 0 0000012221 246799
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 027695 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 193 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg~ 193 (220)
++|.++.+.||+.-++ +|++++..++ ++||+|||.-++-
T Consensus 255 ~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~ 294 (1201)
T TIGR02712 255 AAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQV 294 (1201)
T ss_pred HHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCc
Confidence 9999999999998555 9999986444 6999999998863
No 65
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.12 E-value=5.4e-10 Score=92.61 Aligned_cols=137 Identities=21% Similarity=0.301 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeCh-hhhhc--------cCCCeEEEeecCC-CCe
Q 027695 19 VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSLKK--------LEPPLVLQEFVNH-GGV 88 (220)
Q Consensus 19 ~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~-~~L~~--------~~~p~vvQefI~h-~g~ 88 (220)
+|.+++.+ +...+.+.+.+. +. +|+||+.|. ++.++.++... ..++. ...|+++|+|++. ..=
T Consensus 12 ~P~T~vs~-~~~~i~~f~~~~--~~-~VlKPl~g~---gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~G 84 (173)
T PF02955_consen 12 IPPTLVSR-DKEEIRAFIEEH--GD-IVLKPLDGM---GGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEG 84 (173)
T ss_dssp S--EEEES--HHHHHHHHHHH--SS-EEEEESS-----TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-
T ss_pred CcCEEEEC-CHHHHHHHHHHC--CC-EEEEECCCC---CCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCC
Confidence 58777775 333444444443 33 999999965 46788888774 22222 2458999999984 223
Q ss_pred EEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh---CC
Q 027695 89 LFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---GL 165 (220)
Q Consensus 89 ~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l---Gl 165 (220)
|.|+++++++...+.||- |. .++|+.+ ...++. .....+ ++.-.++|.++...| |+
T Consensus 85 DkRii~~nG~~~~av~R~-P~--~gd~R~N--------~~~Gg~-~~~~~l---------t~~e~~i~~~i~~~L~~~Gl 143 (173)
T PF02955_consen 85 DKRIILFNGEPSHAVRRI-PA--KGDFRSN--------LAAGGS-AEPAEL---------TEREREICEQIGPKLREDGL 143 (173)
T ss_dssp EEEEEEETTEE-SEEEEE-----SS-S-----------GGGTSC-EEEEE-----------HHHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEECCEEhHHeecC-CC--CCCceee--------eccCCc-eeecCC---------CHHHHHHHHHHHHHHhhcCc
Confidence 899999999987665442 21 2344433 111111 111112 344566666666655 88
Q ss_pred ceeEEEEEEeCCCCCeEEEEEecCC
Q 027695 166 RLFNLDIIREHGTRDQFYVIDINYF 190 (220)
Q Consensus 166 ~l~G~Dvi~~~~~~~~~~ViEVN~f 190 (220)
-++|+|+| + + |+.|||.+
T Consensus 144 ~f~GiDvi---g-~---~l~EiNvt 161 (173)
T PF02955_consen 144 LFVGIDVI---G-D---KLTEINVT 161 (173)
T ss_dssp -EEEEEEE---T-T---EEEEEE-S
T ss_pred EEEEEecc---c-c---ceEEEecc
Confidence 99999999 2 2 68999975
No 66
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.12 E-value=7.6e-10 Score=102.24 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=91.3
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCc-EEEeecccCCCCccccceeeeChhhhhcc------------CCCeEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P-~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------------~~p~vv 79 (220)
...||++|++..+++. .+..+.+ ..++|| +|+||..++ +|.++.++.+.+++... ..++++
T Consensus 113 ~~~gIp~p~~~~~~~~-~~~~~~~--~~~g~P~~VvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lv 186 (423)
T TIGR00877 113 KRYGIPTAEYEVFTDP-EEALSYI--QEKGAPAIVVKADGLA---AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVI 186 (423)
T ss_pred HHCCCCCCCeEEECCH-HHHHHHH--HhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3578999999998632 2233322 468999 999997743 56799999999887542 247999
Q ss_pred EeecCCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCC---hHHH
Q 027695 80 QEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP---RPLL 152 (220)
Q Consensus 80 QefI~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 152 (220)
||||+ |.+|.|.++ |+.+... .|.--+ .+........+ ......|.. .++. .+..
T Consensus 187 Ee~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~------------~~~~~~~~~~g---~~~~~~p~~-~~~~~~~~~~~ 248 (423)
T TIGR00877 187 EEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKR------------ALEGDKGPNTG---GMGAYSPAP-VFTEEVEKRIA 248 (423)
T ss_pred EECcc--CceEEEEEEEcCCeEEeceeeeeeee------------cccCCCCCCCC---CCceecCCC-CCCHHHHHHHH
Confidence 99995 789998887 4333321 111000 00000000000 000011110 0111 1224
Q ss_pred HHHHHHHHHHh---CC---ceeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027695 153 ERLAKELRRQL---GL---RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 153 ~~lA~~l~~~l---Gl---~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
++++..+.++| |+ ..+.+|++++. ++ +|++|+|..||-.+.
T Consensus 249 ~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g--~~viEin~R~g~~~~ 295 (423)
T TIGR00877 249 EEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG--PKVLEFNCRFGDPET 295 (423)
T ss_pred HHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC--cEEEEEEccCCCccc
Confidence 55666666666 33 35669999975 33 799999999984433
No 67
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.10 E-value=1.1e-09 Score=112.29 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=98.0
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeec
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
...||++|++..+++. .+..+. ...++||+|+||..+. +|.++.++.|+++|..+ ..++++||||
T Consensus 137 ~~~GIpvp~~~~v~s~-ee~~~~--~~~igyPvVVKP~~g~---gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I 210 (1068)
T PRK12815 137 KELGEPVPESEIVTSV-EEALAF--AEKIGFPIIVRPAYTL---GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESI 210 (1068)
T ss_pred HHcCcCCCCceeeCCH-HHHHHH--HHHcCCCEEEEECcCC---CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEcc
Confidence 4678999999999632 222222 3468999999999754 46788999999998652 1479999999
Q ss_pred CCCCeEEEEEEECCe---EEEEEEecCCCCcccccccCCceeeecCcccccccCCCC-CCCccccCCCChHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~---v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~l 159 (220)
+ +.+++-+-|+.|. +.... +..++++..+.+. +... .+ ++ .+++. ..++++++|.++
T Consensus 211 ~-G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi~tG------~s~~----v~-Pa~~l~~~-----~~~~l~~~a~ki 271 (1068)
T PRK12815 211 A-GWKEIEYEVMRDRNGNCITVC--NMENIDPVGIHTG------DSIV----VA-PSQTLTDD-----EYQMLRSASLKI 271 (1068)
T ss_pred C-CCeEEEEEEEEcCCCCEEEEE--eceecccccccCC------ceEE----Ee-cCCCCCHH-----HHHHHHHHHHHH
Confidence 6 2378999988652 32211 1112111111000 0000 00 11 12211 135689999999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.++||+. .+.+|+.++.+++ ++||+|||.-++
T Consensus 272 ~~~Lg~~G~~~vef~l~~~~g-~~~ViEINPR~~ 304 (1068)
T PRK12815 272 ISALGVVGGCNIQFALDPKSK-QYYLIEVNPRVS 304 (1068)
T ss_pred HHHcCCCCceEEEEEEECCCC-cEEEEEEecCcc
Confidence 9999997 5669999986434 699999995554
No 68
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.06 E-value=1.6e-09 Score=101.64 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=99.2
Q ss_pred CCCCCCCCcEEEEe-cCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeE
Q 027695 13 SYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i~-~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~v 78 (220)
..+|||+|.+..-- .+.++..+ ....++||||+||..|+ +|.||.+|.++++|.+. ++.++
T Consensus 124 ~~aGVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~~Gg---Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~ 198 (449)
T COG0439 124 AKAGVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAAAGG---GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVY 198 (449)
T ss_pred HHcCCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEECCCC---CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 35789999887211 01112222 24567899999998865 57899999999999752 34599
Q ss_pred EEeecCCCCeEEEEEEECCeE-E---EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHH
Q 027695 79 LQEFVNHGGVLFKVYIVGEAI-K---VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 153 (220)
Q Consensus 79 vQefI~h~g~~~KV~ViG~~v-~---~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
+|+||+ +.+-+-+-|+||.. . ...|- |++-- +..+ ...+....++++. ..++-
T Consensus 199 iEk~i~-~~rhievqv~gD~~g~~i~l~eRdcsiqrr-------------~qkv---ieeapsp~~~~e~-----r~~i~ 256 (449)
T COG0439 199 LEKFIE-GPRHIEVQVLGDGHGNVIHLGERDCSIQRR-------------HQKV---IEEAPSPLLTEEL-----REKIG 256 (449)
T ss_pred eeeecc-CCceEEEEEEEcCcccEEEEEeccCCCcCC-------------ccce---eeecCCCCCCHHH-----HHHHH
Confidence 999998 45778888998865 1 22343 33210 0010 0111111222222 46688
Q ss_pred HHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEecCCCC
Q 027695 154 RLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 154 ~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+.|.++.+.+|..-+| +.+|.+. ++ ++|++|+|.-=+
T Consensus 257 ~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~Rlq 294 (449)
T COG0439 257 EAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTRLQ 294 (449)
T ss_pred HHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecccc
Confidence 8999999999999998 9999986 33 699999997654
No 69
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.98 E-value=1.3e-08 Score=85.37 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=84.2
Q ss_pred CCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCCCCccc
Q 027695 41 LTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQ 113 (220)
Q Consensus 41 l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~ 113 (220)
-+||+|||--.++ .+-|=..+.|..++.++ +.-+-++.||+ .-.|++|--||+.+.+++|+|+..
T Consensus 49 ~~fPvVvKvG~~h---~G~GKvkv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~---- 120 (203)
T PF02750_consen 49 PRFPVVVKVGHAH---AGMGKVKVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG---- 120 (203)
T ss_dssp SSSSEEEEESS-S---TTTTEEEE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----
T ss_pred CCCCEEEEEcccc---CceeEEEEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----
Confidence 5899999986554 34566799999888764 56778999997 469999999999999999999742
Q ss_pred ccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEEEEEeCCCCCeEEEEEecCC
Q 027695 114 DLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYF 190 (220)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~l-Gl~l~G~Dvi~~~~~~~~~~ViEVN~f 190 (220)
.|++|.|.=-+. .++.++..+.-+.++.+.+ ||+++++|.|... +| +.||+|||..
T Consensus 121 nWK~N~gsa~lE-------------------qi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds 177 (203)
T PF02750_consen 121 NWKANTGSAMLE-------------------QIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDS 177 (203)
T ss_dssp TSSTTSSSEEEE-------------------EE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-T
T ss_pred cccccccchhee-------------------ecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCC
Confidence 577664321111 1223556788888999999 9999999999986 55 5799999964
No 70
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.97 E-value=9.9e-09 Score=92.88 Aligned_cols=136 Identities=24% Similarity=0.334 Sum_probs=96.7
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCc---EEEeecccCCCCccccceeee-Chhhhhcc----------------
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKKL---------------- 73 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P---~VvKP~~a~Gs~~sh~m~lv~-~~~~L~~~---------------- 73 (220)
..+|++|.+..+++ .++... +-+.+++| +.+||..|. +|.|..++. +.+.++.+
T Consensus 117 ~~~ipvp~~~~v~t-~~el~~--a~~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~ 190 (329)
T PF15632_consen 117 ANGIPVPPYWRVRT-ADELKA--AYEELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAA 190 (329)
T ss_pred hCCCCCCCEEEeCC-HHHHHH--HHHhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHH
Confidence 46899999999963 222322 23456777 999999964 567888888 44554432
Q ss_pred ------CCCeEEEeecCCCCeEEEEEEE--CCeEE-EEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCcccc
Q 027695 74 ------EPPLVLQEFVNHGGVLFKVYIV--GEAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVA 144 (220)
Q Consensus 74 ------~~p~vvQefI~h~g~~~KV~Vi--G~~v~-~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 144 (220)
-+|++++||++ |.+|.|=|+ ++++. ++-|+-. .. ...
T Consensus 191 l~~~~~~~~llvMeyL~--G~EySVD~l~~~G~viaaV~R~K~-G~-------------------------~q~------ 236 (329)
T PF15632_consen 191 LQRSEEFPPLLVMEYLP--GPEYSVDCLADEGRVIAAVPRRKL-GR-------------------------RQV------ 236 (329)
T ss_pred HhccCCCCCcEEecCCC--CCeEEEEEEecCCEEEEEEEEEec-Cc-------------------------eeE------
Confidence 25899999995 788887777 56776 4446532 10 000
Q ss_pred CCCChHHHHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 145 ELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 145 ~~~~~~~~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+..++.+-++|.++++.+||+ +++|++..|. +| +++++|||.-|+
T Consensus 237 -l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 237 -LENDEELIELARRLAEAFGLDGLFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred -EEECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 111456899999999999999 8899999975 34 589999999987
No 71
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.89 E-value=4e-08 Score=91.97 Aligned_cols=155 Identities=8% Similarity=0.062 Sum_probs=87.0
Q ss_pred CCCCCCCCcEE-EEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeC----hhh-hhc---c---CCCeEEE
Q 027695 13 SYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD----QYS-LKK---L---EPPLVLQ 80 (220)
Q Consensus 13 ~~~~I~~P~~~-~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~----~~~-L~~---~---~~p~vvQ 80 (220)
..++|++|.+. ...+. .+..+. ...++||+|+||..+. +|.+|.++.+ .++ +.. + ..++++|
T Consensus 114 ~~~gIptp~~~~~~~~~-~e~~~~--~~~~~~PvVVKP~~~s---ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIE 187 (435)
T PRK06395 114 ERHNIPGNINFNACFSE-KDAARD--YITSMKDVAVKPIGLT---GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIE 187 (435)
T ss_pred HHCCcCCCcccceeCCh-HHHHHH--HHhhCCCEEEEeCCCC---CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEE
Confidence 35789997544 44322 222222 2356999999997743 6779998853 222 221 1 3579999
Q ss_pred eecCCCCeEEEEEEE--CCeEEEE--EEecCCCCcccccccCCceeeecCcccccccCC----CCCCCccccCCCChHHH
Q 027695 81 EFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD----DADLDPCVAELPPRPLL 152 (220)
Q Consensus 81 efI~h~g~~~KV~Vi--G~~v~~~--~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 152 (220)
||| .|.+|.|.++ |+.++.. .+- .+-...++...+. ... |+.++ ...++++ ..+++
T Consensus 188 Efl--~G~E~Svd~~~dg~~~~~l~~~~d-~~r~~~~d~gp~t-------Ggm-G~~s~~~~~~p~l~~~-----~~~~i 251 (435)
T PRK06395 188 KKM--TGEEFSLQAFSDGKHLSFMPIVQD-YKRAYEGDHGPNT-------GGM-GSISDRDFSLPFLSKD-----APERA 251 (435)
T ss_pred eec--CCceEEEEEEEcCCeEEEecccce-eeecccCCCCCcc-------CCC-ccccCCCCCCCCCCHH-----HHHHH
Confidence 999 4788887776 5554321 000 0000000000000 000 11110 0012111 14567
Q ss_pred HHHHHHHHHHhCCc------eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 153 ERLAKELRRQLGLR------LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 153 ~~lA~~l~~~lGl~------l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
++++.++.++|+.+ ++.+++++++ +| ++|||+|.-+|
T Consensus 252 ~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~g 294 (435)
T PRK06395 252 KHILNDIIRAMKDENNPFKGIMYGQFMDTP-NG--VKVIEINARFA 294 (435)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEEEEEeC-CC--cEEEEEeCCCC
Confidence 88999999999952 4469999964 33 79999999998
No 72
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.84 E-value=5.6e-08 Score=89.36 Aligned_cols=152 Identities=18% Similarity=0.304 Sum_probs=92.6
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecC
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVN 84 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~ 84 (220)
..++++|.. ..+ ...+..+ ....++||+||||.++- +|.|-.++.|+++|.++ -.+++++|+|.
T Consensus 126 eigi~~P~~-~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~ 198 (400)
T COG0458 126 EIGIPVPSR-IAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESII 198 (400)
T ss_pred HcCCCCCcc-ccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCceeEEeCHHHHHHHHHhccccCccccceeeeeec
Confidence 467999933 222 1112222 23568999999999853 55688899999999864 24799999997
Q ss_pred CCCeEEEEEEECC----eEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHH
Q 027695 85 HGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160 (220)
Q Consensus 85 h~g~~~KV~ViG~----~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~ 160 (220)
++..+..-|+=| -++++ +.-|+.+...++.+.... + .-..+.. .....++..+.++.
T Consensus 199 -G~ke~e~ev~rd~~~n~ivvc---~men~dp~gvhtgdsi~v------a----paqtl~d-----~eyq~~r~~~~~ii 259 (400)
T COG0458 199 -GWKEFEYEVVRDGKDNCIVVC---NMENLDPMGVHTGDSITV------A----PAQTLTD-----KEYQMLRDAAIKVI 259 (400)
T ss_pred -CceEEEEEEEEeCCCCEEEEE---eCCccccccccccceeee------c----ccccccc-----HHHHHHHHHHHHHH
Confidence 567777666633 23333 333333322222110000 0 0000100 01244666999999
Q ss_pred HHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 161 RQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 161 ~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+.+|+. =..+++.++++++ +|||+|+|.-+|
T Consensus 260 r~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 260 REIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred HHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 999999 2239999988655 899999997776
No 73
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.74 E-value=1.9e-07 Score=85.38 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=89.1
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----C---------CCeE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----E---------PPLV 78 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~---------~p~v 78 (220)
..+||++|++..- + ..+.||+||||..|.|. -|.|+.++.|+++|... + ..++
T Consensus 135 ~~aGI~~Pk~~~~-------p-----~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~i 201 (366)
T PRK13277 135 EKAGIPYPKLFKD-------P-----EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSEELIKAGVIDREDLKNAR 201 (366)
T ss_pred HHcCCCCceeecC-------c-----cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHHhhhhcCcccccccccce
Confidence 3678999987761 1 24799999999987542 28899999999998652 1 3457
Q ss_pred EEeecCCCCeEE--EEEEE--CCeE--EEEEEecCCCCcccccccCCceeeecCcccccc-----cCCCCCCCccc-cCC
Q 027695 79 LQEFVNHGGVLF--KVYIV--GEAI--KVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA-----SADDADLDPCV-AEL 146 (220)
Q Consensus 79 vQefI~h~g~~~--KV~Vi--G~~v--~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~-~~~ 146 (220)
+||||. |..| -+|+- -+++ .+..||---|+ +|+...+...+-.. ....+. .|.. ++.
T Consensus 202 IQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~~p~~vv~G~-~p~t~rEs 270 (366)
T PRK13277 202 IEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNEEPRYIEVGH-EPATIRES 270 (366)
T ss_pred eEeccC--CCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhcccCCceEEEcC-ccccchHH
Confidence 999996 4443 34543 4533 33333321222 22222211101000 000001 1111 111
Q ss_pred CChHHHHHHHHHHHHHhC-------CceeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 147 PPRPLLERLAKELRRQLG-------LRLFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 147 ~~~~~~~~lA~~l~~~lG-------l~l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
..+.+.+++.++.++++ ...|.+|++++++ + .+||+|||.-.|
T Consensus 271 -lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInpR~g 320 (366)
T PRK13277 271 -LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAPRIG 320 (366)
T ss_pred -HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcCCcC
Confidence 24667888888888877 4467799998753 3 699999997555
No 74
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.74 E-value=2e-07 Score=85.31 Aligned_cols=160 Identities=18% Similarity=0.272 Sum_probs=89.0
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------------CCCeEE
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVL 79 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------------~~p~vv 79 (220)
...+||++|++ +.+ . ..+.||+|+||..| + +++|+.++.+++++.+. ...+++
T Consensus 131 L~~aGIp~p~~--~~~-----~-----~~i~~PvIVKp~~g--~-ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iI 195 (358)
T PRK13278 131 LEEAGIRIPRK--YES-----P-----EDIDRPVIVKLPGA--K-GGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAII 195 (358)
T ss_pred HHHcCCCCCCE--eCC-----H-----HHcCCCEEEEeCCC--C-CCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEE
Confidence 34688999996 321 1 12579999999543 3 68999999999888541 367999
Q ss_pred EeecCCCCeEEE--EEEE--CCeEE--EEEEecCCCCcccccccCCceeeecCcccc--c---ccCCCCCCCccccCCCC
Q 027695 80 QEFVNHGGVLFK--VYIV--GEAIK--VVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--A---ASADDADLDPCVAELPP 148 (220)
Q Consensus 80 QefI~h~g~~~K--V~Vi--G~~v~--~~~R~slp~~~~~~~~~~~g~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 148 (220)
||||. |..|- .|+- -+++. ..-|+-.-|. ++.+..+...+- + .....+.. |...+-..
T Consensus 196 EEfI~--G~e~sv~~f~s~~~~~~e~l~id~r~~~~~--------d~~~r~p~~~~~~~~~~p~~v~~Gn~-P~~~resl 264 (358)
T PRK13278 196 QEYVV--GVPYYFHYFYSPIKNRLELLGIDRRYESNI--------DGLVRIPAKDQLELGIDPTYVVVGNI-PVVLRESL 264 (358)
T ss_pred EecCC--CcEEEEEEEEeccCCeEEEEeeceeeeecc--------cceeeccchhhhhcccCCceeEecce-eccchHhH
Confidence 99996 66655 4432 35543 3334422221 122221111000 0 00000000 11100011
Q ss_pred hHHHHHHHHHHHHH----h--CCc-eeEEEEEEeCCCCCeEEEEEecCCC-C-----CCCCCCch
Q 027695 149 RPLLERLAKELRRQ----L--GLR-LFNLDIIREHGTRDQFYVIDINYFP-G-----YGKMPEYE 200 (220)
Q Consensus 149 ~~~~~~lA~~l~~~----l--Gl~-l~G~Dvi~~~~~~~~~~ViEVN~fP-g-----~~g~~~~~ 200 (220)
.+.+.+++.++.++ + |+. -|++|++++.+ + ++||+|||.-+ | +.|.| |.
T Consensus 265 l~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d-~-~~~V~Eis~R~~ggtn~~~~~s~-y~ 326 (358)
T PRK13278 265 LPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDN-L-EIVVFEISARIVAGTNLYMNGSP-YS 326 (358)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCC-C-CEEEEEEeCcccCCccceeCCCc-ch
Confidence 34455555555555 5 444 67799999753 3 58999999988 5 44556 54
No 75
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.72 E-value=5e-08 Score=86.73 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=90.5
Q ss_pred CCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCC-Cccc-cceeeeChhhhhcc---------CCCeEEEeec
Q 027695 15 GKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKSH-ELSLAYDQYSLKKL---------EPPLVLQEFV 83 (220)
Q Consensus 15 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs-~~sh-~m~lv~~~~~L~~~---------~~p~vvQefI 83 (220)
.|++.|+++.+++.. +. ....+.||+|+||..|+|. ..++ ....+.+.++++.. ...+++||||
T Consensus 125 lgl~~P~Ty~v~S~~-d~----~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~I 199 (415)
T COG3919 125 LGLPYPKTYLVNSEI-DT----LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFI 199 (415)
T ss_pred hCCCCcceEEecchh-hh----hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 569999999997432 11 2346899999999986532 1122 24556677777642 4579999999
Q ss_pred CCCCeEEEEE---EECCeEEE--EEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHH
Q 027695 84 NHGGVLFKVY---IVGEAIKV--VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKE 158 (220)
Q Consensus 84 ~h~g~~~KV~---ViG~~v~~--~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~ 158 (220)
|.+|---.+| +..++-++ .-|+.. +|.. +........+.++...+-+.|++
T Consensus 200 PGGgE~qfsyaAlw~~g~pvaeftarr~r-------------qyPv-----------dfgytst~vevvDn~Q~i~aar~ 255 (415)
T COG3919 200 PGGGENQFSYAALWDKGHPVAEFTARRLR-------------QYPV-----------DFGYTSTVVEVVDNQQVIQAARD 255 (415)
T ss_pred CCCCcccchHHHHHhCCCchhhhhcchhh-------------cCCc-----------ccccccEEEEecCcHHHHHHHHH
Confidence 9776533332 23222111 113221 1110 11111222344555556666777
Q ss_pred HHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 159 LRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 159 l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+-+..+-+ +.-||+=.|..+| -+-++|||.-|+
T Consensus 256 ~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 256 FLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred HHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 77777766 6679999998776 699999999998
No 76
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=98.68 E-value=3.1e-08 Score=96.47 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=107.1
Q ss_pred CCCCCCCCcEEEEecCCCC-chHHH---------HhcCCCCcEEEeecccCCCCccccceeeeChh-------hhhcc--
Q 027695 13 SYGKVDVPRQLVIERDASS-IPDVV---------LKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-------SLKKL-- 73 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~-~~~~l---------~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~-------~L~~~-- 73 (220)
+..||++|+...+.++..+ ....+ .-+-+.=|+|=||+.| +-|.++|-+--+ -++.+
T Consensus 139 e~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~----EDHNIYIYYPsSaGGGsqrLFRKIgn 214 (1018)
T KOG1057|consen 139 EAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA----EDHNIYIYYPSSAGGGSQRLFRKIGN 214 (1018)
T ss_pred HHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc----ccccEEEEecCCCCccHHHHHHHhcc
Confidence 4688999999888654322 11111 1233567999999996 588888866431 12221
Q ss_pred -------------CCCeEEEeecCCCCeEEEEEEECCeEE-EEEEecCCCCcccccccCCceeeecCcccccccCCCCCC
Q 027695 74 -------------EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADL 139 (220)
Q Consensus 74 -------------~~p~vvQefI~h~g~~~KV~ViG~~v~-~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 139 (220)
...++.+||+|.+|.|.|||.||-... +-.|+| |.++ |... + ..++.++
T Consensus 215 RSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKS-PvvD--------GkV~--R------ns~GKEv 277 (1018)
T KOG1057|consen 215 RSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-PVVD--------GKVE--R------NSDGKEV 277 (1018)
T ss_pred cccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccC-cccc--------ceee--e------cCCCcee
Confidence 236999999999999999999999875 445887 4431 1110 0 0001111
Q ss_pred -CccccCCCChHHHHHHHHHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchh
Q 027695 140 -DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEH 201 (220)
Q Consensus 140 -~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~ 201 (220)
-|. ...+.-+.+|.+++-+++-+..|||++..+| .-||+|||.|-=.|+.-.|+.
T Consensus 278 RYpv----~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G---~SYVcDVNGfSFVKns~kYYD 333 (1018)
T KOG1057|consen 278 RYPV----ILNSSEKQIARKVCIAFKQTVCGFDLLRANG---KSYVCDVNGFSFVKNSNKYYD 333 (1018)
T ss_pred ecee----ecChhhHHHHhHHHhhccccccchHHhhcCC---ceEEEeccceeeeecchhhhH
Confidence 010 0123347799999999999999999999764 469999999987777766653
No 77
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.67 E-value=7.5e-07 Score=84.63 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=51.5
Q ss_pred CCCCCCCC-cEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhh---------h----hc------
Q 027695 13 SYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----KK------ 72 (220)
Q Consensus 13 ~~~~I~~P-~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~---------L----~~------ 72 (220)
..++|++| .+..+++ ..+..+.+ ...+|+|+||..++ +|.||.++.+.++ + +.
T Consensus 118 ~~~gIpt~~~~~~~~~-~~ea~~~~---~~~~PvVVKP~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~ 190 (486)
T PRK05784 118 WKYSIPGRLRYKVFYD-VEEAAKFI---EYGGSVAIKPARQA---GGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSA 190 (486)
T ss_pred HHcCcCCCccceEeCC-HHHHHHHH---hhcCCEEEeeCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHh
Confidence 45789997 6766652 22233322 22379999997743 5789999999752 1 11
Q ss_pred ----cCCCeEEEeecCCCCeEEEEEEECC
Q 027695 73 ----LEPPLVLQEFVNHGGVLFKVYIVGE 97 (220)
Q Consensus 73 ----~~~p~vvQefI~h~g~~~KV~ViG~ 97 (220)
.+..+++||||. |.++.|.++.|
T Consensus 191 ~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 191 YYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred hccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 134799999994 89999988843
No 78
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.66 E-value=2e-07 Score=83.43 Aligned_cols=152 Identities=17% Similarity=0.265 Sum_probs=94.6
Q ss_pred CCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-----------CCCeEEEeec
Q 027695 15 GKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQEFV 83 (220)
Q Consensus 15 ~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----------~~p~vvQefI 83 (220)
-|+||-++...++. .+..+ ....++||+||||+.+ +.+||=+++.++++++.. ..-+++++||
T Consensus 125 LglpTs~Y~fa~s~-~e~~~--a~~~iGfPcvvKPvMS---SSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv 198 (394)
T COG0027 125 LGLPTSKYRFADSL-EELRA--AVEKIGFPCVVKPVMS---SSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFV 198 (394)
T ss_pred hCCCCccccccccH-HHHHH--HHHHcCCCeecccccc---cCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEe
Confidence 35777777777531 12222 3567999999999993 359999999999999753 3569999999
Q ss_pred CCCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccC--CCC--hHHHHHHHHHH
Q 027695 84 NHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAE--LPP--RPLLERLAKEL 159 (220)
Q Consensus 84 ~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~lA~~l 159 (220)
+- ||-+-.+ +.|..-++ +.|+-+ + |..-.+++..+++.+ +.. .+..+.+|+++
T Consensus 199 ~f---d~EiTlL------tvr~~~~~----------~~Fc~P-I---GHrq~dgdY~ESWQP~~mS~~al~~A~~IA~~v 255 (394)
T COG0027 199 KF---DFEITLL------TVRAVDGT----------GSFCAP-I---GHRQEDGDYRESWQPQEMSEAALEEAQSIAKRV 255 (394)
T ss_pred cc---eEEEEEE------EEEEecCC----------CCcCCC-c---ccccCCCChhcccCccccCHHHHHHHHHHHHHH
Confidence 74 4444333 11211011 001100 0 000012222222211 111 24578899999
Q ss_pred HHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCC
Q 027695 160 RRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 198 (220)
Q Consensus 160 ~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~ 198 (220)
.++||.. +||+.+++. |++.|+-||-.-|-=+|+--
T Consensus 256 t~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmVT 292 (394)
T COG0027 256 TDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMVT 292 (394)
T ss_pred HHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceEE
Confidence 9999877 999999996 35799999999998777653
No 79
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.66 E-value=1.5e-07 Score=88.56 Aligned_cols=127 Identities=16% Similarity=0.282 Sum_probs=90.0
Q ss_pred HhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEEEeecCCCCeEEEEEEECCeEE-E-
Q 027695 37 LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAIK-V- 101 (220)
Q Consensus 37 ~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vvQefI~h~g~~~KV~ViG~~v~-~- 101 (220)
....++||+++|+..|+ ++.||.++.+++++.+. +..++++.||+ +.|-+-|=|.||+.- +
T Consensus 143 ~a~eIgyPvMiKa~~GG---GGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav 218 (670)
T KOG0238|consen 143 VAREIGYPVMIKATAGG---GGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAV 218 (670)
T ss_pred HHHhcCCcEEEEeccCC---CCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEE
Confidence 35679999999999976 57899999999888652 56899999998 568899999998753 1
Q ss_pred -E-EEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EEEEEeCC
Q 027695 102 -V-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHG 177 (220)
Q Consensus 102 -~-~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G-~Dvi~~~~ 177 (220)
- +|- |+.- . +.+ .-..+....++++. +..+.+.|.++++++|..-+| |.||+|..
T Consensus 219 ~l~ERdCSvQR--------R------nQK--iiEEaPap~l~~e~-----R~~lgeaAv~aa~avgY~~aGTVEFi~D~~ 277 (670)
T KOG0238|consen 219 HLGERDCSVQR--------R------NQK--IIEEAPAPNLPEET-----RRALGEAAVRAAKAVGYVGAGTVEFIVDSK 277 (670)
T ss_pred Eecccccchhh--------h------hhh--hhhcCCCCCCCHHH-----HHHHHHHHHHHHHhhCCcccceEEEEEcCC
Confidence 1 232 2210 0 000 00001111122221 567999999999999999999 99999974
Q ss_pred CCCeEEEEEecCC
Q 027695 178 TRDQFYVIDINYF 190 (220)
Q Consensus 178 ~~~~~~ViEVN~f 190 (220)
+.+|++|.|+-
T Consensus 278 --~~FyFmEmNTR 288 (670)
T KOG0238|consen 278 --DNFYFMEMNTR 288 (670)
T ss_pred --CcEEEEEeece
Confidence 36999999964
No 80
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.61 E-value=3e-07 Score=82.67 Aligned_cols=120 Identities=26% Similarity=0.288 Sum_probs=73.8
Q ss_pred CCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCCCCeEEEEEEECC----eEEEEEEecCCCCccccccc
Q 027695 42 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLST 117 (220)
Q Consensus 42 ~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h~g~~~KV~ViG~----~v~~~~R~slp~~~~~~~~~ 117 (220)
.+|+|.||+.|+|. . +-++.-.|+.. ..++++|||| .|+-..|-+|++ .+.++-+.-+ + |..
T Consensus 149 ekt~IlKPv~GaGG--~--~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~-----~~~ 214 (389)
T COG2232 149 EKTLILKPVSGAGG--L--VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-D-----GLR 214 (389)
T ss_pred ceeeEEeeccCCCc--e--eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-c-----ccc
Confidence 45599999997654 2 32222222222 3789999999 599999999977 3333323211 1 110
Q ss_pred -CCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEecCCC
Q 027695 118 -SAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFP 191 (220)
Q Consensus 118 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fP 191 (220)
..+.|- +++ .++|-..+ ..++++++|..+...|||- .-|||+++.+ .| +||||||.-+
T Consensus 215 ~~~~~f~----Y~G-------NlTP~~~~--~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVNPR~ 274 (389)
T COG2232 215 GEYSQFV----YKG-------NLTPFPYE--EVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVNPRI 274 (389)
T ss_pred cccccce----ecc-------CcCCCcch--hhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEecCcc
Confidence 111121 222 22221111 1257899999999999998 6689999975 33 7999999544
No 81
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.60 E-value=1.4e-06 Score=76.93 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=31.3
Q ss_pred CcEEEeecccCCCCccccceeeeChhhhhc----cCCCeEEEeecCC----CC--eEEEEEEE
Q 027695 43 LPLVAKPLVADGSAKSHELSLAYDQYSLKK----LEPPLVLQEFVNH----GG--VLFKVYIV 95 (220)
Q Consensus 43 ~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~----~~~p~vvQefI~h----~g--~~~KV~Vi 95 (220)
--+|+||..+ + .|.||.++.+.+++.. ...++|||+||+. +| .|+|+||+
T Consensus 66 ~~wI~KP~~~--~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvl 125 (292)
T PF03133_consen 66 NLWIVKPSNG--S-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVL 125 (292)
T ss_dssp --EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEE
T ss_pred CEEEEecccc--C-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEE
Confidence 3599999774 3 7899999999999985 4679999999974 23 68999988
No 82
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.57 E-value=2e-07 Score=78.64 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcE-EEeecccCCCCccccceeeeChhhhhcc-------------CCCeEE
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPL-VAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVL 79 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~-VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vv 79 (220)
.++|||+.+..++ +..+..+.+.. ..+|+ |+|+.. -..+.++.++.+.++..+. ..++++
T Consensus 12 ~~~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViKadG---la~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvI 85 (194)
T PF01071_consen 12 RYGIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIKADG---LAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVI 85 (194)
T ss_dssp HTT-SB--EEEES-SHHHHHHHHHH--HSSSEEEEEESS---SCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEE
T ss_pred HcCCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEccCC---CCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEE
Confidence 5789999999987 33344455544 57787 999963 4467899999999665331 358999
Q ss_pred EeecCCCCeEEEEEEE--CCeEE
Q 027695 80 QEFVNHGGVLFKVYIV--GEAIK 100 (220)
Q Consensus 80 QefI~h~g~~~KV~Vi--G~~v~ 100 (220)
|||+ .|+++.++++ |+.+.
T Consensus 86 EE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 86 EEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp EE-----SEEEEEEEEEESSEEE
T ss_pred Eecc--CCeEEEEEEEEcCCeEE
Confidence 9999 6999999888 55543
No 83
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.55 E-value=1.1e-05 Score=71.59 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=104.7
Q ss_pred CCCCCCCCcEEEE-ecC------CCCc--hHHHHhcCCCCcEEEeecccCCCCccccceeeeChhh---------hhc--
Q 027695 13 SYGKVDVPRQLVI-ERD------ASSI--PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------LKK-- 72 (220)
Q Consensus 13 ~~~~I~~P~~~~i-~~~------~~~~--~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~---------L~~-- 72 (220)
...||++|..+.- ..+ ..+. .+.+.......++|+||..| | +++|+.++...++ +.+
T Consensus 35 ~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G--~-~G~Gi~~i~~~~~~~~~~~~~~~~~~~ 111 (285)
T PF14397_consen 35 RDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG--S-GGKGILVIDRRDGSEINRDISALYAGL 111 (285)
T ss_pred HHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC--C-CccCEEEEEeecCcccccchhHHHHHH
Confidence 3568999994331 110 1111 11222333359999999874 4 6888888877652 111
Q ss_pred --cC-CCeEEEeecCCC----------CeEEEEEEE-C-Ce--EE-EEEEecCCCCcccccccCCcee---eecCc-ccc
Q 027695 73 --LE-PPLVLQEFVNHG----------GVLFKVYIV-G-EA--IK-VVRRFSLPDVTKQDLSTSAGVF---RFPRV-SCA 130 (220)
Q Consensus 73 --~~-~p~vvQefI~h~----------g~~~KV~Vi-G-~~--v~-~~~R~slp~~~~~~~~~~~g~~---~~~~~-~~~ 130 (220)
.. ..+++||+|... =-++||.++ . +. +. +.+|-+-.....+.+.+ +|.+ |.... ...
T Consensus 112 ~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~~~~~DN~~~-Ggi~~~ID~~tGl~~~ 190 (285)
T PF14397_consen 112 ESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRGGSGVDNFHQ-GGIGVGIDLATGLGRF 190 (285)
T ss_pred HhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCCCCcccccCC-CCEEEEEecCCCcccc
Confidence 11 279999998632 146888877 3 23 32 45676522111122221 1211 11111 000
Q ss_pred -cccCCCCCC--Ccc------ccCCCChHHHHHHHHHHHHHh-CCceeEEEEEEeCCCCCeEEEEEecCC--CCCCCCCC
Q 027695 131 -AASADDADL--DPC------VAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYF--PGYGKMPE 198 (220)
Q Consensus 131 -~~~~~~~~~--~~~------~~~~~~~~~~~~lA~~l~~~l-Gl~l~G~Dvi~~~~~~~~~~ViEVN~f--Pg~~g~~~ 198 (220)
+....+... .|. ...+|.-+++.++|.++++.+ ++.+.|.|+.++. +| +++||.|+. ||+.-..-
T Consensus 191 ~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~-~G--p~llE~N~~~~pgl~~~~~ 267 (285)
T PF14397_consen 191 AGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITE-DG--PVLLEGNARWDPGLMIQIA 267 (285)
T ss_pred ccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcC-CC--cEEEEeeCCCCCCcHhhhc
Confidence 000001111 121 134565678999999998765 7899999999986 34 799999999 99875533
Q ss_pred chhHHHHHHHHHH
Q 027695 199 YEHIFTDFLLSLT 211 (220)
Q Consensus 199 ~~~~l~~~i~~~~ 211 (220)
....|...+.+.+
T Consensus 268 ~g~gl~~~~~~v~ 280 (285)
T PF14397_consen 268 NGPGLFPRLQEVE 280 (285)
T ss_pred cCcchHHHHHHHH
Confidence 3333444444433
No 84
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.54 E-value=5.4e-07 Score=88.56 Aligned_cols=125 Identities=17% Similarity=0.277 Sum_probs=92.3
Q ss_pred hcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEEEeecCCCCeEEEEEEECCe----EE
Q 027695 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IK 100 (220)
Q Consensus 38 ~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vvQefI~h~g~~~KV~ViG~~----v~ 100 (220)
..+.+||+++|-.+|+ +++||-+|.++++|.+. +..++++.||. +.+-+-|=++||+ |+
T Consensus 154 a~~~gyPvmiKA~~GG---GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvH 229 (1149)
T COG1038 154 AEEYGYPVMIKAAAGG---GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVH 229 (1149)
T ss_pred HHhcCCcEEEEEccCC---CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEE
Confidence 5578999999999976 58999999999999652 56899999998 5688999999886 34
Q ss_pred EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EEEEEeCCC
Q 027695 101 VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGT 178 (220)
Q Consensus 101 ~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G-~Dvi~~~~~ 178 (220)
.++|- |+.- . |++ --..+.-..++++. +.++.+.|.++++..|..-+| +.|+++.+
T Consensus 230 LfERDCSvQR-----R---------hQK--VVE~APa~~L~~~~-----R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~- 287 (1149)
T COG1038 230 LFERDCSVQR-----R---------HQK--VVEVAPAPYLSPEL-----RDEICDDAVKLARNIGYINAGTVEFLVDED- 287 (1149)
T ss_pred Eeecccchhh-----c---------cce--eEEecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcccceEEEEEcCC-
Confidence 45553 3210 0 110 00112222344443 567899999999999999999 99999974
Q ss_pred CCeEEEEEecC
Q 027695 179 RDQFYVIDINY 189 (220)
Q Consensus 179 ~~~~~ViEVN~ 189 (220)
+ ++|+||||.
T Consensus 288 ~-~fyFIEvNP 297 (1149)
T COG1038 288 G-KFYFIEVNP 297 (1149)
T ss_pred C-cEEEEEecC
Confidence 4 689999994
No 85
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.54 E-value=1.2e-07 Score=82.70 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=66.3
Q ss_pred EEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCCCCeEEEEEEE-CCeEEEEEEecCCCCcccccccCCceee
Q 027695 45 LVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIV-GEAIKVVRRFSLPDVTKQDLSTSAGVFR 123 (220)
Q Consensus 45 ~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h~g~~~KV~Vi-G~~v~~~~R~slp~~~~~~~~~~~g~~~ 123 (220)
.|+||..|||+. ++....+..++ +++||||+ |.-+.|-++ |+++..- |+ | ++ .+ -+..
T Consensus 141 ~ViKp~dgCgge---~i~~~~~~pd~------~i~qEfIe--G~~lSVSL~~GEkv~pL---sv-N-rQ-fi----~~~~ 199 (307)
T COG1821 141 YVIKPADGCGGE---GILFGRDFPDI------EIAQEFIE--GEHLSVSLSVGEKVLPL---SV-N-RQ-FI----IFAG 199 (307)
T ss_pred EEecccccCCcc---eeeccCCCcch------hhHHHhcC--CcceEEEEecCCccccc---ee-c-hh-hh----hhcc
Confidence 899999999663 44444443332 89999996 555555554 7775422 11 0 00 00 0111
Q ss_pred ecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC-Cc-eeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 124 FPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG-LR-LFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lG-l~-l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
+.-.+.++. +.++. +..++..+.|.++.+.++ |+ ++|||+|..+ .+||||||.-|.
T Consensus 200 ~~~~y~gg~----~pi~h-----e~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvIEINpR~T 257 (307)
T COG1821 200 SELVYNGGR----TPIDH-----ELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVIEINPRPT 257 (307)
T ss_pred ceeeeccCc----CCCCc-----HHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEEEecCCCC
Confidence 111222221 11221 124556677777777665 77 8899999962 479999999987
No 86
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.45 E-value=9.3e-07 Score=84.17 Aligned_cols=126 Identities=13% Similarity=0.218 Sum_probs=90.2
Q ss_pred hcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEEEeecCCCCeEEEEEEECCeE----E
Q 027695 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAI----K 100 (220)
Q Consensus 38 ~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vvQefI~h~g~~~KV~ViG~~v----~ 100 (220)
...++||+.+|...|+ ++.||-++.+++++.+. +..++++.|+.. -|-+-|=|+||+. +
T Consensus 148 A~eiGyPVlIKAsaGG---GGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~ 223 (645)
T COG4770 148 AEEIGYPVLIKASAGG---GGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVH 223 (645)
T ss_pred HHhcCCcEEEEeccCC---CCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEE
Confidence 5679999999998875 57899999999888652 568999999985 5888888998874 2
Q ss_pred EEEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EEEEEeCCC
Q 027695 101 VVRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGT 178 (220)
Q Consensus 101 ~~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G-~Dvi~~~~~ 178 (220)
.-.|- |+.- ..+.+- ..+...-++++. ++.|-+-|.+++++.|..-+| |-||++.+
T Consensus 224 LgERdCSlQR-------------RhQKVI---EEAPaP~l~~~~-----R~amg~aAv~~a~avgY~gAGTVEFivd~~- 281 (645)
T COG4770 224 LGERDCSLQR-------------RHQKVI---EEAPAPFLTEET-----REAMGEAAVAAAKAVGYVGAGTVEFIVDAD- 281 (645)
T ss_pred eeccccchhh-------------hcchhh---hcCCCCCCCHHH-----HHHHHHHHHHHHHhcCCCcCceEEEEEcCC-
Confidence 23343 3310 001110 011111233332 567999999999999999999 99999974
Q ss_pred CCeEEEEEecCC
Q 027695 179 RDQFYVIDINYF 190 (220)
Q Consensus 179 ~~~~~ViEVN~f 190 (220)
+ .+|++|+|+-
T Consensus 282 ~-~f~FlEMNTR 292 (645)
T COG4770 282 G-NFYFLEMNTR 292 (645)
T ss_pred C-cEEEEEeecc
Confidence 3 4999999964
No 87
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.40 E-value=1.2e-05 Score=73.59 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=110.7
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------CCCeEEEeecCC
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNH 85 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------~~p~vvQefI~h 85 (220)
....||+||.|..+++. +++.+.+ ..++||.|+|...| |= +++|-.++.+.+++... ...+++++||+-
T Consensus 107 l~~~Gi~va~~~~v~~~-~el~~~~--~~~g~p~VlKtr~g-GY-DGkGQ~~i~~~~~~~~~~~~~~~~~~~vlE~fV~F 181 (375)
T COG0026 107 LDKAGLPVAPFQVVDSA-EELDAAA--ADLGFPAVLKTRRG-GY-DGKGQWRIRSDADLELRAAGLAEGGVPVLEEFVPF 181 (375)
T ss_pred HHHcCCCCCCeEEeCCH-HHHHHHH--HHcCCceEEEeccc-cc-cCCCeEEeeCcccchhhHhhhhccCceeEEeeccc
Confidence 34678999999999742 3455544 45779999999995 44 79999999988777641 223399999985
Q ss_pred CCeEEEEEEE---CCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 027695 86 GGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 86 ~g~~~KV~Vi---G~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
.+++.|.+. ++.+.++ |-.-|+ +..|...+.- -++.+++. ..+..+++|.++.+.
T Consensus 182 -~~EiSvi~aR~~~G~~~~y--P~~eN~------h~~gIl~~si--------aPa~i~~~-----~~~~A~~~a~~i~~~ 239 (375)
T COG0026 182 -EREISVIVARSNDGEVAFY--PVAENV------HRNGILRTSI--------APARIPDD-----LQAQAEEMAKKIAEE 239 (375)
T ss_pred -ceEEEEEEEEcCCCCEEEe--ccccee------eecCEEEEEE--------ecCcCCHH-----HHHHHHHHHHHHHHH
Confidence 488888777 2232221 111121 1122222111 12233322 246789999999999
Q ss_pred hCCc-eeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc----hhHHHHHHHHHH
Q 027695 163 LGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY----EHIFTDFLLSLT 211 (220)
Q Consensus 163 lGl~-l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~----~~~l~~~i~~~~ 211 (220)
|+.- .+|+-+.+..+ | +++|.|+=.-|=-.|-=-. .+-|.++|+..+
T Consensus 240 L~yvGVl~vE~Fv~~d-g-~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~ 291 (375)
T COG0026 240 LDYVGVLAVEFFVTPD-G-ELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVL 291 (375)
T ss_pred cCceEEEEEEEEEECC-C-cEEEeeccCCCCCccccchhhccccHHHHHHHHHh
Confidence 9998 88999999863 4 6999999877765443211 245556655543
No 88
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.36 E-value=8.5e-06 Score=71.54 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=90.3
Q ss_pred CCcEEEEecCCCCchHHHHhcCCCC-cEEEeecccCCCCccccceeeeChhh----------------------hhc---
Q 027695 19 VPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLAYDQYS----------------------LKK--- 72 (220)
Q Consensus 19 ~P~~~~i~~~~~~~~~~l~~~~l~~-P~VvKP~~a~Gs~~sh~m~lv~~~~~----------------------L~~--- 72 (220)
.|.|..+++ .+++.+.|. .| -+++||..| | .+.|+..|.-..+ |..
T Consensus 36 LP~T~~~~~-~~~l~~~L~----~y~~vylKP~~G--s-~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 107 (262)
T PF14398_consen 36 LPETELLTS-FEDLREMLN----KYKSVYLKPDNG--S-KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLK 107 (262)
T ss_pred CCCceEcCC-HHHHHHHHH----HCCEEEEEeCCC--C-CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHH
Confidence 899988863 123433332 44 488999885 4 5666665554422 111
Q ss_pred --c-CCCeEEEeecCC---C--CeEEEEEEE--CC---eEE-EEEEecCCCCcccccccCCceeeecCcccccccCCCCC
Q 027695 73 --L-EPPLVLQEFVNH---G--GVLFKVYIV--GE---AIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 138 (220)
Q Consensus 73 --~-~~p~vvQefI~h---~--g~~~KV~Vi--G~---~v~-~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 138 (220)
+ ..++++||.|+- + -.|+||.|- |. ++. ...|.+-++- +.+ |++++|.......
T Consensus 108 ~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rva~~~~----ivT--------N~~~GG~~~~~~~ 175 (262)
T PF14398_consen 108 ELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVTGIVARVAKPGS----IVT--------NLSQGGTALPFEE 175 (262)
T ss_pred HhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEEEEEEEEcCCCC----cee--------ccCCCceecCHHH
Confidence 1 348999999973 2 478999999 22 233 3457765441 111 2222222111000
Q ss_pred -CCcc--c--cCCCChHHHHHHHHHHHHHhCC--ceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCc
Q 027695 139 -LDPC--V--AELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 199 (220)
Q Consensus 139 -~~~~--~--~~~~~~~~~~~lA~~l~~~lGl--~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~ 199 (220)
+... . ......+....+|..+.+.+|. .-+|+|+-+|. +| ++|+||||.-|+-..+..+
T Consensus 176 ~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 176 VLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 0000 0 0000123345566666667775 56799999996 44 7999999999997777765
No 89
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.16 E-value=1.1e-05 Score=78.29 Aligned_cols=125 Identities=16% Similarity=0.251 Sum_probs=89.6
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------------CCCeEEEeecCCCCeEEEEEEECCeE----EE
Q 027695 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAI----KV 101 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------------~~p~vvQefI~h~g~~~KV~ViG~~v----~~ 101 (220)
...+||+|.|...|+ +++||.+|.+-+++++. +.-++++.||+. -|-+-|-.+||+. +.
T Consensus 181 k~yG~PvI~KAAyGG---GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHL 256 (1176)
T KOG0369|consen 181 KEYGLPVIIKAAYGG---GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHL 256 (1176)
T ss_pred HhcCCcEEEeecccC---CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEE
Confidence 457999999999875 58999999999888652 557999999985 4888999998863 44
Q ss_pred EEEe-cCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EEEEEeCCCC
Q 027695 102 VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTR 179 (220)
Q Consensus 102 ~~R~-slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G-~Dvi~~~~~~ 179 (220)
++|- |..- . |.+- -..+.-..++|++ ++.+-.-|.++++..|..-+| +.|++|.. |
T Consensus 257 yERDCSvQR-----R---------HQKV--VEiAPA~~Lp~~v-----R~~~~~davklAk~vgY~NAGTvEFLvD~~-g 314 (1176)
T KOG0369|consen 257 YERDCSVQR-----R---------HQKV--VEIAPAKTLPPEV-----RDAILTDAVKLAKHVGYENAGTVEFLVDQK-G 314 (1176)
T ss_pred eecccchhh-----h---------hcce--eEecccccCCHHH-----HHHHHHHHHHHHHHhCcccCCceEEEEccC-C
Confidence 4553 2100 0 1110 0112222344443 556778899999999999999 99999974 4
Q ss_pred CeEEEEEecCC
Q 027695 180 DQFYVIDINYF 190 (220)
Q Consensus 180 ~~~~ViEVN~f 190 (220)
++|+||||.-
T Consensus 315 -~hYFIEvN~R 324 (1176)
T KOG0369|consen 315 -RHYFIEVNPR 324 (1176)
T ss_pred -CEEEEEecCc
Confidence 6899999954
No 90
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.01 E-value=9.3e-05 Score=68.75 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------C-------CCeEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------E-------PPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------~-------~p~vv 79 (220)
..++|||+.+-.++ +.++..+.+ ...+.|+|+||.- -..+.|+.++.+.++..+. + ..+|+
T Consensus 112 ~k~~IPta~y~~f~-~~e~a~ayi--~~~g~piVVKadG---LaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVI 185 (428)
T COG0151 112 KKYGIPTAEYEVFT-DPEEAKAYI--DEKGAPIVVKADG---LAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVI 185 (428)
T ss_pred HHcCCCcccccccC-CHHHHHHHH--HHcCCCEEEeccc---ccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEE
Confidence 46789999998887 434444444 4589999999942 2357799999998776542 1 45999
Q ss_pred EeecCCCCeEEEEEEE--CCeEEEEEEecCCCCcccccccCCceeeecCccc---ccccCCCCCCCccccCCCChHHHHH
Q 027695 80 QEFVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC---AAASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 80 QefI~h~g~~~KV~Vi--G~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
+||. .|.++.++++ |+.+. .+|-.+ +-+. -|+=+.... =|+++...-++++..+.-.++-++.
T Consensus 186 EEfL--~GeE~S~~a~~DG~~v~-----p~p~aQ--DhKr---a~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~p 253 (428)
T COG0151 186 EEFL--DGEEFSLQAFVDGKTVI-----PMPTAQ--DHKR---AYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEP 253 (428)
T ss_pred Eecc--cceEEEEEEEEcCCeEE-----ECcccc--cccc---ccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999 5888887777 66654 333211 1000 011000000 0122211112222111101133455
Q ss_pred HHHHHHHHhCCceeE---EEEEEeCCCCCeEEEEEecCCCCCCCC----CCchhHHHHHHHHHHhh
Q 027695 155 LAKELRRQLGLRLFN---LDIIREHGTRDQFYVIDINYFPGYGKM----PEYEHIFTDFLLSLTQS 213 (220)
Q Consensus 155 lA~~l~~~lGl~l~G---~Dvi~~~~~~~~~~ViEVN~fPg~~g~----~~~~~~l~~~i~~~~~~ 213 (220)
.+..+++. |..+-| .=+++.. +| ++|||.|.-+|==.- +...+-|.+.+...++.
T Consensus 254 tv~gm~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g 315 (428)
T COG0151 254 TVEGMAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDG 315 (428)
T ss_pred HHHHHHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhC
Confidence 56666666 777777 3455554 34 799999999882222 22234455555555543
No 91
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.70 E-value=0.0057 Score=53.12 Aligned_cols=160 Identities=17% Similarity=0.254 Sum_probs=90.3
Q ss_pred CCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChh-----hhh----c----------------
Q 027695 18 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-----SLK----K---------------- 72 (220)
Q Consensus 18 ~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~-----~L~----~---------------- 72 (220)
..|...-+.++.+++ .-..|+-++|+||+.|||+ ..++.+.. .+. .
T Consensus 36 ~l~pll~v~~~~~~i----~~~~Lp~~fViK~nhgsg~-----~~i~~dk~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~ 106 (239)
T PF14305_consen 36 YLPPLLGVYDNPDDI----DFDSLPDKFVIKPNHGSGS-----NIIVRDKSKLDIEEAKKKLNRWLKKDYYYQSREWHYK 106 (239)
T ss_pred eECceeecCCChhhh----hhhcCCCCEEEEEecCCCc-----EEEEeCCcccCHHHHHHHHHHHhhhccccccccccCc
Confidence 445455453332222 3456889999999997654 34444432 111 1
Q ss_pred -cCCCeEEEeecCCC-C---eEEEEEEECCeEEEEEEecCCCCcccccccCCceee--ecCcccccccCCCCCCCccccC
Q 027695 73 -LEPPLVLQEFVNHG-G---VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFR--FPRVSCAAASADDADLDPCVAE 145 (220)
Q Consensus 73 -~~~p~vvQefI~h~-g---~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~ 145 (220)
+.+-++++||+... | +|||+|+.++++....--+-+.- .....+|+ +....-.... + .....+
T Consensus 107 ~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~-----~~~~~~yd~dw~~l~~~~~~--~---~~~~~~ 176 (239)
T PF14305_consen 107 NIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFG-----NHKRNFYDRDWNRLPFRSDY--P---PDEDIP 176 (239)
T ss_pred CCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCC-----CeEEEEECcccCCCccccCC--C---CCCCCC
Confidence 13569999999975 4 69999999997654332211100 00011232 1111110000 0 011111
Q ss_pred CC-ChHHHHHHHHHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchh
Q 027695 146 LP-PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEH 201 (220)
Q Consensus 146 ~~-~~~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~ 201 (220)
.| .-++|-++|.+|++- ..+.-||+...+ +++|+=|+=.+||=.-.+-++.
T Consensus 177 kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~---~~iyFGElTf~p~~G~~~~~p~ 228 (239)
T PF14305_consen 177 KPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD---GKIYFGELTFTPGAGFEPFFPP 228 (239)
T ss_pred CChhHHHHHHHHHHHccC--CCEEEEEEEEeC---CcEEEEeeecCCCCcCCCCCCH
Confidence 12 236789999999887 557889999864 2599999999999664444443
No 92
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.59 E-value=7.6e-05 Score=68.76 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=59.4
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCC-CcEEEeec--ccCCCCccccceeeeChhhhhcc-----C---------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPL--VADGSAKSHELSLAYDQYSLKKL-----E--------- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-~P~VvKP~--~a~Gs~~sh~m~lv~~~~~L~~~-----~--------- 74 (220)
.+.+||+||.+.++++ ..+..+. ...++ ||+|+||. .| |...+.++.++.+++++.+. .
T Consensus 12 l~~~GIpvp~~~~~~~-~~ea~~~--~~~ig~~PvVvK~~~~~g-gkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~ 87 (386)
T TIGR01016 12 FAKYGIPVPRGYVATS-VEEAEEI--AAKLGAGPVVVKAQVHAG-GRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTD 87 (386)
T ss_pred HHHcCCCCCCceeeCC-HHHHHHH--HHHhCCCcEEEEecccCC-CCccCceEEEeCCHHHHHHHHHHHhccceeecccC
Confidence 4578999999999853 2223222 23578 99999997 32 33345689999998887542 1
Q ss_pred ------CCeEEEeecCCCCeEEEEEEECCe
Q 027695 75 ------PPLVLQEFVNHGGVLFKVYIVGEA 98 (220)
Q Consensus 75 ------~p~vvQefI~h~g~~~KV~ViG~~ 98 (220)
..+++|||+++ |+++-|.++.|+
T Consensus 88 ~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~ 116 (386)
T TIGR01016 88 PLGQPVNKILIEEATDI-DKEYYLSIVIDR 116 (386)
T ss_pred CCCCEeeEEEEEECccC-CceEEEEEEEcC
Confidence 14999999974 799999999886
No 93
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00016 Score=65.91 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=84.7
Q ss_pred CCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCCCCccc
Q 027695 41 LTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQ 113 (220)
Q Consensus 41 l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~ 113 (220)
-.||+|||-..|+ -+-|-..|.|.++|.++ +...-+|-||+. -.|+||=-||..+.+++|.|+- +
T Consensus 238 ~tyPvVVkvghah---sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDa-KYDiriQKIG~nYKaymRtsIs----g 309 (488)
T KOG3895|consen 238 PTYPVVVKVGHAH---SGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMRTSIS----G 309 (488)
T ss_pred CCCcEEEEecccc---cccceeeecchhhhHhHHHHHHHHhhhhhccccccc-cceeehhhhhhhHHHHhhhhhc----c
Confidence 4599999997765 24566778899998774 456778999984 4899999999999999999873 3
Q ss_pred ccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhC-CceeEEEEEEeCCCCCeEEEEEecC
Q 027695 114 DLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTRDQFYVIDINY 189 (220)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lG-l~l~G~Dvi~~~~~~~~~~ViEVN~ 189 (220)
.|++|.|.--...+ ...+.-+.....+.+.+| |++..||.+... +| |=||+|||.
T Consensus 310 nWKtNtGSamLEQI-------------------amseRyklwvdtcse~fGgldICav~alhsK-dG-rd~i~eV~d 365 (488)
T KOG3895|consen 310 NWKTNTGSAMLEQI-------------------AMSERYKLWVDTCSEMFGGLDICAVKALHSK-DG-RDYIIEVMD 365 (488)
T ss_pred CcccCchHHHHHHH-------------------HHHHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-hhheeeecc
Confidence 57766331000000 012334556666777775 678899999875 45 458999996
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.24 E-value=0.00044 Score=63.73 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=60.9
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCC-CCcEEEeeccc-CCCCccccceeeeChhhhhcc------C---------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL------E--------- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l-~~P~VvKP~~a-~Gs~~sh~m~lv~~~~~L~~~------~--------- 74 (220)
...+|||+|.+.++++. ++..+ ....+ +||+|+||..- +|.+.+.++.+..+++++.+. .
T Consensus 12 L~~~gIpvp~~~~~~~~-~ea~~--~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~ 88 (388)
T PRK00696 12 FAKYGVPVPRGIVATTP-EEAVE--AAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGP 88 (388)
T ss_pred HHHcCCCCCCCeeeCCH-HHHHH--HHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCC
Confidence 45789999999988632 22332 22357 89999999742 344567799999998887541 1
Q ss_pred C-----CeEEEeecCCCCeEEEEEEECCeEE
Q 027695 75 P-----PLVLQEFVNHGGVLFKVYIVGEAIK 100 (220)
Q Consensus 75 ~-----p~vvQefI~h~g~~~KV~ViG~~v~ 100 (220)
. .+++|||+++ |+++-+.+..|..+
T Consensus 89 ~g~~~~gvlVe~~~~~-~~E~~vg~~~D~~f 118 (388)
T PRK00696 89 KGQPVNKVLVEEGADI-AKEYYLSIVLDRAT 118 (388)
T ss_pred CCCEEeEEEEEeccCC-CceEEEEEEEcCCC
Confidence 1 3899999974 79999999988643
No 95
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0015 Score=62.28 Aligned_cols=73 Identities=21% Similarity=0.372 Sum_probs=46.4
Q ss_pred CCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCC------CCeEEE
Q 027695 18 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNH------GGVLFK 91 (220)
Q Consensus 18 ~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h------~g~~~K 91 (220)
..|.+.++-.|..+..+...+ .-.-=+||||-. |+.+-|+.++.....+.. +.|++||+||.. +-+|++
T Consensus 282 fmPrtyilP~d~e~lrk~w~~-nasr~wIVkppa---saRg~gIrv~~kw~q~pk-~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEK-NASRLWIVKPPA---SARGIGIRVINKWSQFPK-DRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhh-CccccEEecCcc---cccCcceEeccchhhCCC-cccHHHHHHhhcceeecCcceeEE
Confidence 367777774332223222222 111129999976 456778999888887763 579999999863 346777
Q ss_pred EEEE
Q 027695 92 VYIV 95 (220)
Q Consensus 92 V~Vi 95 (220)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 7765
No 96
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.03 E-value=0.0013 Score=66.33 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecC
Q 027695 14 YGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVN 84 (220)
Q Consensus 14 ~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~ 84 (220)
.-||.-|.|..+++- ++. +. -...++||+++.|..-- .+-.|.+++++++|+.+ +-|+++-.||+
T Consensus 1043 ~i~v~Qp~Wkelt~~-~eA-~~-F~~~VgYP~lvRPSYVL---SGaAMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie 1116 (1435)
T KOG0370|consen 1043 SIGVDQPAWKELTSL-EEA-KK-FAEKVGYPVLVRPSYVL---SGAAMNVVYSESDLKSYLEQASAVSPDHPVVISKFIE 1116 (1435)
T ss_pred HcCCCchhhhhhccH-HHH-HH-HHHhcCCceEeccccee---cchhhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc
Confidence 356888988888631 111 12 24579999999997521 14479999999999863 56999999998
Q ss_pred CCCeEEEEEEE--CCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 027695 85 HGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 162 (220)
Q Consensus 85 h~g~~~KV~Vi--G~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~ 162 (220)
+++++-|=.+ .+++.+. -.|- -.++.|. |+. .+.-...+.++++.. -+.+++++.+++++
T Consensus 1117 -~AkEidvDAVa~~G~~~~h-aiSE-------HvEnAGV---HSG-DAtlv~Ppq~l~~~t-----~~rik~i~~ki~~a 1178 (1435)
T KOG0370|consen 1117 -GAKEIDVDAVASDGKVLVH-AISE-------HVENAGV---HSG-DATLVLPPQDLSADT-----LERIKDIAAKVAKA 1178 (1435)
T ss_pred -ccceechhhhccCCeEEEE-ehhh-------hhhcccc---cCC-ceeEeCCchhcCHHH-----HHHHHHHHHHHHHH
Confidence 6788776555 3444332 1121 1111111 110 000001122222211 35689999999999
Q ss_pred hCCc-eeEEEEEEeCCCCCeEEEEEecC
Q 027695 163 LGLR-LFNLDIIREHGTRDQFYVIDINY 189 (220)
Q Consensus 163 lGl~-l~G~Dvi~~~~~~~~~~ViEVN~ 189 (220)
|.++ -|.+-+|..+ +++.|||.|.
T Consensus 1179 ~~itGPfN~Q~i~k~---n~lkVIECN~ 1203 (1435)
T KOG0370|consen 1179 LKITGPFNMQIIAKD---NELKVIECNV 1203 (1435)
T ss_pred hcccCCceEEEEecC---CeEEEEEeee
Confidence 9999 8899999864 3699999995
No 97
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=96.84 E-value=0.0049 Score=64.72 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=89.1
Q ss_pred hcCCCCcEEEeecccCCCCccccceeeeChhhhhcc---------CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCC
Q 027695 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLP 108 (220)
Q Consensus 38 ~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~---------~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp 108 (220)
...++||+.+|...|| ++.|+-.+.+.+++..+ ..|+++-.-.. ++|-+-|=.++|++.-+.--.-+
T Consensus 235 ae~IGfPvMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~IsLfgR 310 (2196)
T KOG0368|consen 235 AEKIGFPVMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVISLFGR 310 (2196)
T ss_pred HHhcCCceEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeEeecc
Confidence 4559999999999987 46688888999999875 46899998887 57889999998885422110001
Q ss_pred CCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EEEEEeCCCCCeEEEEEe
Q 027695 109 DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDI 187 (220)
Q Consensus 109 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~l~G-~Dvi~~~~~~~~~~ViEV 187 (220)
+ +.++.. |.+ .-..+ ++.+.|. .....|++.|.++++..|.--+| |..+-..++| +||++|.
T Consensus 311 D---CSiQRR------hQK--IIEEA-PatIap~----etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~fyFLEL 373 (2196)
T KOG0368|consen 311 D---CSIQRR------HQK--IIEEA-PATIAPP----ETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EYYFLEL 373 (2196)
T ss_pred c---chHHHH------HHH--HHhhC-CcccCCH----HHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cEEEEec
Confidence 1 000000 100 00000 2222221 11467999999999999999999 9999987665 8999999
Q ss_pred cCC
Q 027695 188 NYF 190 (220)
Q Consensus 188 N~f 190 (220)
|.-
T Consensus 374 NPR 376 (2196)
T KOG0368|consen 374 NPR 376 (2196)
T ss_pred Ccc
Confidence 953
No 98
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.60 E-value=0.11 Score=41.11 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=66.3
Q ss_pred CcEEEeecccCCCCccccceeeeChhhhhcc-----CCCeEEEeecCCCCeEEEEEEECCeEEEEEEecCCCCccccccc
Q 027695 43 LPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST 117 (220)
Q Consensus 43 ~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~~p~vvQefI~h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~ 117 (220)
-|+-+||..- .. .-.=.++.+.++|... +.++++.|.++ =..++|+||+.++++..-+-. +
T Consensus 2 ~~~FiKP~~~--~K-~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~--~-------- 67 (130)
T PF14243_consen 2 RPVFIKPPDD--DK-SFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYR--G-------- 67 (130)
T ss_pred CCeEeCCCCC--CC-cceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecC--C--------
Confidence 3778899762 11 1111244445665432 56899999997 478999999999998764431 0
Q ss_pred CCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHH-HhCCceeEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 118 SAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR-QLGLRLFNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 118 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~-~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
.....+ ..+.+......+.+ ...-..|.+|+=+.. +| .++|||+|.+=+
T Consensus 68 ------------------~~~~~~------~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 68 ------------------DWDLEP------DPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ------------------CcccCC------CHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 000110 12323333333332 344557889998875 34 589999997655
No 99
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=95.03 E-value=0.0096 Score=51.26 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=43.3
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeeccc---CCCCcccccee-eeChhhhhcc--------------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA---DGSAKSHELSL-AYDQYSLKKL-------------- 73 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a---~Gs~~sh~m~l-v~~~~~L~~~-------------- 73 (220)
...+||++|.+..+++. ++..+ ....++||+++|-... |=| +..++.+ +.++++++..
T Consensus 19 L~~yGI~~~~~~~~~~~-~ea~~--~a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p~ 94 (222)
T PF13549_consen 19 LAAYGIPVPPTRLVTSA-EEAVA--AAEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEVREAFERLRERVAAHHPG 94 (222)
T ss_dssp HHTTT------EEESSH-HHHHH--HHHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHcCcCCCCeeEeCCH-HHHHH--HHHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45789999999999632 22222 2346899999999753 222 3445666 7788777642
Q ss_pred --CCCeEEEeecCCCCeEEEEEEECCe
Q 027695 74 --EPPLVLQEFVNHGGVLFKVYIVGEA 98 (220)
Q Consensus 74 --~~p~vvQefI~h~g~~~KV~ViG~~ 98 (220)
-..++||+.+++.|.++-|.+.-|-
T Consensus 95 ~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 95 ARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp ----EEEEEE------EEEEEEEEEET
T ss_pred CccceEEEEEcccCCcEEEEEEEEECC
Confidence 1259999999877999988877654
No 100
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=94.96 E-value=0.12 Score=46.36 Aligned_cols=92 Identities=18% Similarity=0.375 Sum_probs=62.6
Q ss_pred CeEEEeecCC-CCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHH
Q 027695 76 PLVLQEFVNH-GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 76 p~vvQefI~h-~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
-+++.+|++- .+.+|||||-++++++.--+.+ + .|+|=. ..... ....+.+
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~-----------~~~~L~-----------~~~~~-----I~~~I~~ 202 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-N-----------YYDFLE-----------ELKEE-----IRSKIQE 202 (299)
T ss_pred EEEEeccccCCccceEEEEEECCEEEEEecccc-c-----------ccHHHH-----------HHHHH-----HHHHHHH
Confidence 4899999984 5999999999999987632222 2 111100 00000 1233455
Q ss_pred HH-HHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCCCCCC
Q 027695 155 LA-KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM 196 (220)
Q Consensus 155 lA-~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~ 196 (220)
.. ..+...+.+.-|-|||.+.... ++.++||+|.|-+.++-
T Consensus 203 F~~~~I~~~~~~~~~v~DVyi~~~~-~~v~LID~NPf~~~Td~ 244 (299)
T PF07065_consen 203 FFEEHIKPKFPLDNYVFDVYITRDK-DKVWLIDFNPFGPRTDP 244 (299)
T ss_pred HHHHHHHhhCCCCCEEEEEEEcCCC-CeEEEEEecCCcccCcc
Confidence 44 5678889999999999998742 37999999999986553
No 101
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.085 Score=50.55 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=43.1
Q ss_pred hcCCCCcEEEeecccCCCCccccceeeeChhhhhcc------------CCCeEEEeecCCC----C--eEEEEEEECC
Q 027695 38 KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVLQEFVNHG----G--VLFKVYIVGE 97 (220)
Q Consensus 38 ~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~------------~~p~vvQefI~h~----g--~~~KV~ViG~ 97 (220)
+.+-....|+||.. .+.+.|+.++.+.+.+.+. +..+++|-||++. | .|+|.||+=.
T Consensus 195 ~~~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt 269 (497)
T KOG2157|consen 195 EDSERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVT 269 (497)
T ss_pred hccccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEee
Confidence 33557899999954 4589999999999887654 3579999999874 3 3558888744
No 102
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=92.74 E-value=0.23 Score=46.23 Aligned_cols=84 Identities=12% Similarity=-0.022 Sum_probs=58.5
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCCc-EEEeecc-cCCCCccccceeeeChhhhhcc-----C----------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLV-ADGSAKSHELSLAYDQYSLKKL-----E---------- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P-~VvKP~~-a~Gs~~sh~m~lv~~~~~L~~~-----~---------- 74 (220)
...+||++|++.++++ .++..+ ....++|| +|+|... .+|-..+.++.+..|++++... .
T Consensus 12 L~~yGIpvp~~~~~~~-~~ea~~--~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~ 88 (392)
T PRK14046 12 LASFGVAVPRGALAYS-PEQAVY--RARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGP 88 (392)
T ss_pred HHHcCCCCCCceEECC-HHHHHH--HHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCC
Confidence 4578999999999863 223333 23468995 5999743 3455567888888899887642 1
Q ss_pred -----CCeEEEeecCCCCeEEEEEEECCeE
Q 027695 75 -----PPLVLQEFVNHGGVLFKVYIVGEAI 99 (220)
Q Consensus 75 -----~p~vvQefI~h~g~~~KV~ViG~~v 99 (220)
.-+++|+++++ ++++-+.+.=|+.
T Consensus 89 ~g~~v~~vlVe~~~~~-~~E~ylgi~~D~~ 117 (392)
T PRK14046 89 EGKPVQRVYVETADPI-ERELYLGFVLDRK 117 (392)
T ss_pred CCCeeeeEEEEEecCC-CcEEEEEEEECCC
Confidence 13899999985 6888887776653
No 103
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=92.42 E-value=0.21 Score=42.38 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=44.1
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCCC-cEEEeec-ccCCCCccccceeeeChhhhhcc-----C----------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPL-VADGSAKSHELSLAYDQYSLKKL-----E---------- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~-P~VvKP~-~a~Gs~~sh~m~lv~~~~~L~~~-----~---------- 74 (220)
.+.+||++|++.++++. ++..+...+ ++. ++|+|+. .++|.--+-++-++.++++...+ .
T Consensus 11 l~~~gi~vp~g~~a~s~-eea~~~~~~--l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~ 87 (202)
T PF08442_consen 11 LRKYGIPVPRGVVATSP-EEAREAAKE--LGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGP 87 (202)
T ss_dssp HHCTT----SEEEESSH-HHHHHHHHH--HTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTT
T ss_pred HHHcCCCCCCeeecCCH-HHHHHHHHH--hCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCC
Confidence 34679999999999642 233333223 444 6899995 44555556778999999887652 0
Q ss_pred -----CCeEEEeecCCCCeEEEEEE
Q 027695 75 -----PPLVLQEFVNHGGVLFKVYI 94 (220)
Q Consensus 75 -----~p~vvQefI~h~g~~~KV~V 94 (220)
.-++++|+++|. ++|=+.+
T Consensus 88 ~G~~v~~vlvee~v~~~-~E~Ylsi 111 (202)
T PF08442_consen 88 KGEKVNKVLVEEFVDIK-REYYLSI 111 (202)
T ss_dssp TEEEE--EEEEE---CC-EEEEEEE
T ss_pred CCCEeeEEEEEecCccC-ceEEEEE
Confidence 137999999986 4443333
No 104
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=0.18 Score=47.76 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCCcEEEeecccCCCCccccceeeeChhhhhccCCCeEEEeecCC-------CCeEEEEEEE
Q 027695 40 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNH-------GGVLFKVYIV 95 (220)
Q Consensus 40 ~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~~p~vvQefI~h-------~g~~~KV~Vi 95 (220)
..+-|+||||..|+ -|.|++++.+......++. .++||||-. =-.|+|||+|
T Consensus 224 ~~KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~l 282 (565)
T KOG2158|consen 224 IMKRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSL 282 (565)
T ss_pred HhcccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeee
Confidence 35669999999865 5668999976655555433 678888732 2356777776
No 105
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=84.24 E-value=14 Score=36.51 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=52.6
Q ss_pred CCCCCCCCcEEEEecCCCCchHHHHhcCCCCcEEEeecccCCCCccccceeeeChhh-hhcc------------CCCeEE
Q 027695 13 SYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS-LKKL------------EPPLVL 79 (220)
Q Consensus 13 ~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~-L~~~------------~~p~vv 79 (220)
+.|+|||-.+..++. +++....+ +..--.++|+|- .|-.-+.++.+..+.++ ++++ ..-+++
T Consensus 117 ~r~~IPTA~y~~ft~-~e~a~sfi-~~~~~~~~ViKA---dGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvVi 191 (788)
T KOG0237|consen 117 HRHNIPTAKYKTFTD-PEEAKSFI-QSATDKALVIKA---DGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVI 191 (788)
T ss_pred HhcCCCcceeeeeCC-HHHHHHHH-HhCCCcceEEee---cccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEeh
Confidence 467899999999974 22333333 222337799996 34556779999888754 3321 346999
Q ss_pred EeecCCCCeEEEEEEECCe
Q 027695 80 QEFVNHGGVLFKVYIVGEA 98 (220)
Q Consensus 80 QefI~h~g~~~KV~ViG~~ 98 (220)
+||.+ |-+..++..=|-
T Consensus 192 EE~LE--GeEvS~laftDG 208 (788)
T KOG0237|consen 192 EELLE--GEEVSFLAFTDG 208 (788)
T ss_pred hhhcC--cceEEEEEEecC
Confidence 99994 778887777443
No 106
>PLN02235 ATP citrate (pro-S)-lyase
Probab=84.13 E-value=2.7 Score=39.71 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=50.6
Q ss_pred CCCCCCCcEEEE-ecCCCCchHHHHhc-CCCCc-EEEeecc-cCCCCccccceeeeChhhhhcc-----CC---------
Q 027695 14 YGKVDVPRQLVI-ERDASSIPDVVLKA-GLTLP-LVAKPLV-ADGSAKSHELSLAYDQYSLKKL-----EP--------- 75 (220)
Q Consensus 14 ~~~I~~P~~~~i-~~~~~~~~~~l~~~-~l~~P-~VvKP~~-a~Gs~~sh~m~lv~~~~~L~~~-----~~--------- 75 (220)
..|||+|...++ ++ .++..+...+. .|+.| +|+|+.. ++|---+-++-++.|+++..++ ..
T Consensus 22 ~~gipvP~~~v~~~~-~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G 100 (423)
T PLN02235 22 LAGIDLPIRSAQVTE-STDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKG 100 (423)
T ss_pred cCCCCCCCCeeccCC-HHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCc
Confidence 469999999988 53 22232222121 15554 6999963 3444456678999999888653 11
Q ss_pred ---CeEEEeecCCCCeEEEEEEECC
Q 027695 76 ---PLVLQEFVNHGGVLFKVYIVGE 97 (220)
Q Consensus 76 ---p~vvQefI~h~g~~~KV~ViG~ 97 (220)
-++++|+++|. ++|=+.++-|
T Consensus 101 ~v~~vLVEe~v~i~-~E~Ylsi~~D 124 (423)
T PLN02235 101 PITTFIVEPFVPHD-QEFYLSIVSD 124 (423)
T ss_pred cEeEEEEEecCCCc-ceEEEEEEEe
Confidence 35888888875 5544444433
No 107
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=82.67 E-value=2.5 Score=39.33 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=56.9
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCCC-CcEEEeec-ccCCCCccccceeeeChhhhhcc-----C----------
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPL-VADGSAKSHELSLAYDQYSLKKL-----E---------- 74 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l~-~P~VvKP~-~a~Gs~~sh~m~lv~~~~~L~~~-----~---------- 74 (220)
...+|||+|+..++.+. ++..+ ....++ .|+|||+. .++|.--+-|+-++.|.++..+. .
T Consensus 12 f~~~GiPvp~g~v~~s~-eea~~--~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~ 88 (387)
T COG0045 12 FAKYGIPVPPGYVATSP-EEAEE--AAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGE 88 (387)
T ss_pred HHHcCCCCCCceeeeCH-HHHHH--HHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCc
Confidence 56789999999998642 22322 223455 89999996 34455456689999999887642 1
Q ss_pred --CCeEEEeecCCCCeEEEEEEECCe
Q 027695 75 --PPLVLQEFVNHGGVLFKVYIVGEA 98 (220)
Q Consensus 75 --~p~vvQefI~h~g~~~KV~ViG~~ 98 (220)
.-++++|++||..++|=+-++=|+
T Consensus 89 ~v~~vlvee~~~~~~~E~Ylsiv~DR 114 (387)
T COG0045 89 PVNKVLVEEAVDIIKKEYYLSIVLDR 114 (387)
T ss_pred eeeEEEEEecCCCccceEEEEEEEEc
Confidence 138999999976656655555343
No 108
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=76.57 E-value=12 Score=35.12 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=43.7
Q ss_pred cEEEeecccCCCCccccceeeeChhhhhc----c-CCCeEEEeecCC---CC-e-EEEEEEECCeEEE-EEEec
Q 027695 44 PLVAKPLVADGSAKSHELSLAYDQYSLKK----L-EPPLVLQEFVNH---GG-V-LFKVYIVGEAIKV-VRRFS 106 (220)
Q Consensus 44 P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~----~-~~p~vvQefI~h---~g-~-~~KV~ViG~~v~~-~~R~s 106 (220)
..|.||..| - ++-+|.|+.+-..+.. + +.++|.|+|++= +| . .+=+++|||+... ..|.+
T Consensus 309 ~yV~KPi~g--R-EG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~ 379 (397)
T PHA02117 309 KYVSKPLLS--R-EGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIRED 379 (397)
T ss_pred CEEeccCCC--c-CCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecC
Confidence 399999994 3 6778999866433322 2 578999999984 33 3 5889999998875 46875
No 109
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=72.31 E-value=5.4 Score=36.48 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=36.4
Q ss_pred hHHHHhcCCCCc------------EEEeecccCCCCccccceeeeChhhhhcc-----C---------CCeEEEeecC
Q 027695 33 PDVVLKAGLTLP------------LVAKPLVADGSAKSHELSLAYDQYSLKKL-----E---------PPLVLQEFVN 84 (220)
Q Consensus 33 ~~~l~~~~l~~P------------~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-----~---------~p~vvQefI~ 84 (220)
-+.|.++++++| +|||+..|- +++|-.++.+.+++.+- . ....+||||=
T Consensus 129 ~~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 129 YKLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAK---GGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHHHHcCCCCCcccCChHHcCCceEEecCCcc---CCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 345667777776 999998764 58999999999998652 1 2477888884
No 110
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=71.89 E-value=2.9 Score=39.69 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=38.0
Q ss_pred CCcEEEEec-------CCCCchHHHHhcCCCCcEEEeecccCCCCccccceee--eChhhhhc-----cCCCeEEEeecC
Q 027695 19 VPRQLVIER-------DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA--YDQYSLKK-----LEPPLVLQEFVN 84 (220)
Q Consensus 19 ~P~~~~i~~-------~~~~~~~~l~~~~l~~P~VvKP~~a~Gs~~sh~m~lv--~~~~~L~~-----~~~p~vvQefI~ 84 (220)
+|-|..++. +..++.+...+ =+==+|+||.-+. +||||++= .++++.++ ++.|+|+|||+.
T Consensus 310 vP~T~~l~~~~~~~~g~~~dL~~~~~a--~r~~lVLKP~D~Y---gg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~ 384 (445)
T PF14403_consen 310 VPWTRLLTAGRTTYQGEDVDLVEFAIA--NRDRLVLKPNDEY---GGKGVYIGWETSPEEWEAALEEAAREPYILQEYVR 384 (445)
T ss_pred CCceEEEcCccccccccchhHHHHHHh--chhcEEecccccc---CCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 688888864 12233322222 2445899998864 56777653 34454443 377999999997
Q ss_pred C
Q 027695 85 H 85 (220)
Q Consensus 85 h 85 (220)
-
T Consensus 385 ~ 385 (445)
T PF14403_consen 385 P 385 (445)
T ss_pred C
Confidence 4
No 111
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=64.38 E-value=12 Score=35.23 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=34.2
Q ss_pred cCCCCCCCCcEEEEecCCCCchHHHHhcCC---CCcEEEeecc-cCCCCcc-------ccceeeeChhhhhc
Q 027695 12 NSYGKVDVPRQLVIERDASSIPDVVLKAGL---TLPLVAKPLV-ADGSAKS-------HELSLAYDQYSLKK 72 (220)
Q Consensus 12 ~~~~~I~~P~~~~i~~~~~~~~~~l~~~~l---~~P~VvKP~~-a~Gs~~s-------h~m~lv~~~~~L~~ 72 (220)
...+||++|++.++++ .++..+. ...+ ++|+|+|+.. ++|---+ -++.+..+ +++.+
T Consensus 39 L~~~GIpvp~~~va~t-~eea~~a--a~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~ 106 (422)
T PLN00124 39 MSKYGVNVPKGAAASS-LDEVKKA--LEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE 106 (422)
T ss_pred HHHcCCCCCCceeeCC-HHHHHHH--HHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence 4578999999999863 2223221 2345 7999999984 2333212 34556655 65543
No 112
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.67 E-value=42 Score=30.09 Aligned_cols=87 Identities=17% Similarity=0.302 Sum_probs=53.5
Q ss_pred CeEEEeecC-CCCeEEEEEEECCeEEEEEEecCCCCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHH
Q 027695 76 PLVLQEFVN-HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLER 154 (220)
Q Consensus 76 p~vvQefI~-h~g~~~KV~ViG~~v~~~~R~slp~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
.+++-++-+ |.+-+|||||=.+++++...|-..| .|++=. .. .+.++.
T Consensus 164 eLvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tn-----------yYd~l~--------------e~------kd~~k~ 212 (334)
T KOG2983|consen 164 ELVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTN-----------YYDVLL--------------EE------KDLLKG 212 (334)
T ss_pred hhhHhhhcCCCcCceEEEEEeccceeeeeeccchh-----------HHHHHH--------------HH------HHHHHH
Confidence 466777766 5799999999999988764333222 222110 00 123344
Q ss_pred HHHHHHHH-----hCCceeEEEEEEeCCCCCeEEEEEecCCCCCCC
Q 027695 155 LAKELRRQ-----LGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK 195 (220)
Q Consensus 155 lA~~l~~~-----lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g 195 (220)
+...+.+. +-=.-|-||+-++.. ++.++||+|.|=|-+.
T Consensus 213 lI~eff~d~i~~kF~dedfvfDVYi~k~--~kv~lID~Npf~~~Td 256 (334)
T KOG2983|consen 213 LIEEFFKDKILFKFPDEDFVFDVYITKE--RKVWLIDFNPFCGSTD 256 (334)
T ss_pred HHHHHHHhhhhccCCCCCeeEEEEecCC--CcEEEEeccCccCccc
Confidence 44333333 344467899998863 4799999999987443
No 113
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=59.50 E-value=11 Score=34.43 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=18.0
Q ss_pred CCceeEEEEEEeCCCCCeEEEEEecCC
Q 027695 164 GLRLFNLDIIREHGTRDQFYVIDINYF 190 (220)
Q Consensus 164 Gl~l~G~Dvi~~~~~~~~~~ViEVN~f 190 (220)
-+.++|+|++.+. +| +++|||.|.-
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~ 91 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTR 91 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-S
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCC
Confidence 4789999999986 45 6999999954
No 114
>PRK04247 hypothetical protein; Provisional
Probab=58.58 E-value=1.2e+02 Score=26.45 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=17.1
Q ss_pred E-EEEEEeCCCCCeEEEEEecCCC
Q 027695 169 N-LDIIREHGTRDQFYVIDINYFP 191 (220)
Q Consensus 169 G-~Dvi~~~~~~~~~~ViEVN~fP 191 (220)
| +|++..+++| .++|||+=.--
T Consensus 160 G~IDila~D~~G-~lViVEvKrr~ 182 (238)
T PRK04247 160 GIIDILGRDKDG-NLVVLELKRRR 182 (238)
T ss_pred CceeEEEECCCC-CEEEEEEEEcc
Confidence 5 8999887655 68999997553
No 115
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=53.86 E-value=9.3 Score=39.77 Aligned_cols=136 Identities=16% Similarity=0.233 Sum_probs=73.7
Q ss_pred HhcCCCCcEEEeecccCCCCccccceeeeChhhhhcc-------CCCeEEEeecCCCCeEEEEEEECCeEE-EEEEecCC
Q 027695 37 LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSLP 108 (220)
Q Consensus 37 ~~~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~-------~~p~vvQefI~h~g~~~KV~ViG~~v~-~~~R~slp 108 (220)
+.+.++||+|+....+-|. -|=....|+++|.++ .+.++++.=.. +=.++-.-|+-|..- |..-...-
T Consensus 528 aae~l~ypvivRaayalgg---lgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnme 603 (1435)
T KOG0370|consen 528 AAERLGYPVIVRAAYALGG---LGSGFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNME 603 (1435)
T ss_pred HHHhcCcHHHHHHHHHhcC---ccccccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCc
Confidence 3667999999999765322 233456899999764 34566666663 112233335555432 22222344
Q ss_pred CCcccccccCCceeeecCcccccccCCCCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEEEEEeCCCCCeEEEEEe
Q 027695 109 DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDI 187 (220)
Q Consensus 109 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~l~~~lGl~-l~G~Dvi~~~~~~~~~~ViEV 187 (220)
|+++-.+.+.+... .+....++.+. ...++..|.++-+.||.- =..+-...+..+- +|+||||
T Consensus 604 n~DplgihtGdSiV----------vapsqtlsd~e-----y~mlrttaikVirhlgvvGEcniQyaL~p~s~-~y~IiEV 667 (1435)
T KOG0370|consen 604 NFDPLGIHTGDSIV----------VAPSQTLSDEE-----YQMLRTTAIKVIRHLGVVGECNIQYALNPYSL-EYRIIEV 667 (1435)
T ss_pred ccCcceeeccceEE----------EeeccccChHH-----HHHHHhcchhheeccCCcccccceeeecccce-eEEEEEE
Confidence 44443333221111 01111222111 245777788888888865 2346666655333 7999999
Q ss_pred cCCCC
Q 027695 188 NYFPG 192 (220)
Q Consensus 188 N~fPg 192 (220)
|.-=+
T Consensus 668 NarLS 672 (1435)
T KOG0370|consen 668 NARLS 672 (1435)
T ss_pred EeEEe
Confidence 97544
No 116
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=53.75 E-value=22 Score=31.92 Aligned_cols=34 Identities=21% Similarity=0.604 Sum_probs=26.6
Q ss_pred HHHHHHhCCce------eEEEEEEeCCCCCeEEEEEecCCCC
Q 027695 157 KELRRQLGLRL------FNLDIIREHGTRDQFYVIDINYFPG 192 (220)
Q Consensus 157 ~~l~~~lGl~l------~G~Dvi~~~~~~~~~~ViEVN~fPg 192 (220)
..+.+.+|+++ =-||+++.. ++..|+||+|++-|
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGS 218 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecC
Confidence 44566678877 559999964 34799999999988
No 117
>PRK03298 hypothetical protein; Provisional
Probab=50.15 E-value=1.7e+02 Score=25.37 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.0
Q ss_pred eE-EEEEEeCCCCCeEEEEEecCC
Q 027695 168 FN-LDIIREHGTRDQFYVIDINYF 190 (220)
Q Consensus 168 ~G-~Dvi~~~~~~~~~~ViEVN~f 190 (220)
+| +|++..+..| .++++||---
T Consensus 134 ~G~IDil~rD~~G-~~V~vEvKRr 156 (224)
T PRK03298 134 IGPVDLLCRDADG-GTVAVEIKRR 156 (224)
T ss_pred CCceeEEEEcCCC-CEEEEEEEec
Confidence 57 9999987556 6899999866
No 118
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.82 E-value=32 Score=33.30 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=30.5
Q ss_pred CCceeEEEEEEeCCCCCeEEEEEecCCCCCCCCCCchhHHH
Q 027695 164 GLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFT 204 (220)
Q Consensus 164 Gl~l~G~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~~~~l~ 204 (220)
-..+||+|+++++. . .+|+||||+.|.++.-......+.
T Consensus 376 ~FElyG~DfliD~~-l-kpwLiEiNssP~~~~t~~~d~~l~ 414 (497)
T KOG2157|consen 376 CFELYGFDFLIDEA-L-KPWLIEINASPDLTQTTKNDARLK 414 (497)
T ss_pred hhhhhCcceeecCC-C-CeEEEEeecCCcccccchhhhHHH
Confidence 34689999999974 4 589999999999988776544433
No 119
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=40.52 E-value=18 Score=26.79 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=15.7
Q ss_pred EeecCCC--CeEEEEEEECCe
Q 027695 80 QEFVNHG--GVLFKVYIVGEA 98 (220)
Q Consensus 80 QefI~h~--g~~~KV~ViG~~ 98 (220)
+.|+||+ |-+|+|..+|+.
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~ 23 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEG 23 (88)
T ss_dssp --EEEETTTEEEEEEEEECTT
T ss_pred cccccCCccchheeeeeCCCc
Confidence 6799998 999999999885
No 120
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=39.54 E-value=1e+02 Score=30.74 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=42.2
Q ss_pred cEEEeecccCCCCccccceeeeCh-hhhhc----c-CCCeEEEeecCCC---C--eEEEEEEECCeEEE-EEEec
Q 027695 44 PLVAKPLVADGSAKSHELSLAYDQ-YSLKK----L-EPPLVLQEFVNHG---G--VLFKVYIVGEAIKV-VRRFS 106 (220)
Q Consensus 44 P~VvKP~~a~Gs~~sh~m~lv~~~-~~L~~----~-~~p~vvQefI~h~---g--~~~KV~ViG~~v~~-~~R~s 106 (220)
..|.||..| - ++-+|.|+.+. ..+.. + +.++|.|+|++=+ | ..+=+++|||+..+ ..|.+
T Consensus 529 ~yV~KPi~G--R-EG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 529 GYAVKPIAG--R-CGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred CeEeccCCC--c-CCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 389999994 3 57789998762 22222 2 4689999999842 2 34778999998875 46865
No 121
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=39.29 E-value=83 Score=29.47 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=40.4
Q ss_pred EEEeecccCCCCccccceeeeChhhhhccC----------------CCeEEEeecCCCCe------EEEEEEECCeEEEE
Q 027695 45 LVAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHGGV------LFKVYIVGEAIKVV 102 (220)
Q Consensus 45 ~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~~----------------~p~vvQefI~h~g~------~~KV~ViG~~v~~~ 102 (220)
+|||...| + .+-|+..+.+.+++..++ ..+++||=|...-+ +==||-||..+++.
T Consensus 260 ViVKADaG--T-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 260 VIVKADAG--T-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred EEEEcCCC--C-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 78898773 4 677888899999987651 25899998764322 22378888888764
Q ss_pred -EEe
Q 027695 103 -RRF 105 (220)
Q Consensus 103 -~R~ 105 (220)
.|.
T Consensus 337 fYRv 340 (403)
T TIGR02049 337 FYRV 340 (403)
T ss_pred EEEe
Confidence 354
No 122
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=38.90 E-value=74 Score=29.89 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=27.0
Q ss_pred cee-EEEEEEeCCCCCeEEEEEecCCCC-CCCCC-CchhHHHHHHHHHHhhh
Q 027695 166 RLF-NLDIIREHGTRDQFYVIDINYFPG-YGKMP-EYEHIFTDFLLSLTQSR 214 (220)
Q Consensus 166 ~l~-G~Dvi~~~~~~~~~~ViEVN~fPg-~~g~~-~~~~~l~~~i~~~~~~~ 214 (220)
-++ .||+--. |-++.=||.|.||| |-++. .+..+-++++.+.+++-
T Consensus 25 PfY~SVDlRna---GfKlAPVDtNLFPaGfNNL~~~~~plavqa~~~aiek~ 73 (404)
T PF08886_consen 25 PFYSSVDLRNA---GFKLAPVDTNLFPAGFNNLNPEFLPLAVQAAMAAIEKI 73 (404)
T ss_dssp -SEEEEEEEE----SS-EEEEEEESS---GGGS-GGGHHHHHHHHHHHHHHH
T ss_pred CceEEEEeccc---CCccccccccCCcCcccCCCHHHHHHHHHHHHHHHHHh
Confidence 345 5997643 34699999999998 66664 34455566666666553
No 123
>PRK14676 hypothetical protein; Provisional
Probab=35.78 E-value=83 Score=24.27 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EEEEEeCCCCCeEEEEEecCCCCCCCCCCc-----hhHHHHHHHHHHhhhc
Q 027695 151 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPGYGKMPEY-----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 151 ~~~~lA~~l~~~lGl~l~--------G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~-----~~~l~~~i~~~~~~~~ 215 (220)
.-+++|.+.-+.-|..+. | +|+|...+ +.+++|||-+-.+|..-... ...+......|+..+.
T Consensus 12 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~lVFVEVKt~~~~g~~~eaV~~~K~~ri~~aA~~yL~~~~ 88 (117)
T PRK14676 12 TAEEAVARIYDRSGRPVAARRWRGVSGEIDLIAREG--AEVIFIEVKKSKSHAAAAARLSRRQMDRIYGAASEFLAGEP 88 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeecCCCCCeEEEEEeeC--CEEEEEEEeeCCCCCChhHcCCHHHHHHHHHHHHHHHHhCC
Confidence 457778888888888753 5 99999763 47999999986665542121 2456666677775543
No 124
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=33.88 E-value=12 Score=33.78 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=40.0
Q ss_pred cCCCCcEEEeecccCCCCccccceeeeCh-----hhhhccC---------CCeEEEeecCCCCeEEEEEEECCeEEEEE
Q 027695 39 AGLTLPLVAKPLVADGSAKSHELSLAYDQ-----YSLKKLE---------PPLVLQEFVNHGGVLFKVYIVGEAIKVVR 103 (220)
Q Consensus 39 ~~l~~P~VvKP~~a~Gs~~sh~m~lv~~~-----~~L~~~~---------~p~vvQefI~h~g~~~KV~ViG~~v~~~~ 103 (220)
.-+++|.+.||+.| | +-.|..+... +++.... .+.++|+|+ .|..|+++|.+++..++.
T Consensus 84 e~~giPyvg~gv~~--S--a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSSv 156 (317)
T COG1181 84 ELLGIPYVGKGVLA--S--AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSSV 156 (317)
T ss_pred HHhCCCEecCchhh--h--hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCcccee
Confidence 35899999999985 3 2234333333 4444321 356677888 588999999999988665
No 125
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=33.05 E-value=24 Score=32.80 Aligned_cols=55 Identities=27% Similarity=0.397 Sum_probs=35.9
Q ss_pred EEEeecccCCCCccccceeeeCh-hhhhcc-----CCCeEEEeecCCCCeE---EEE--EEECCeEEEE
Q 027695 45 LVAKPLVADGSAKSHELSLAYDQ-YSLKKL-----EPPLVLQEFVNHGGVL---FKV--YIVGEAIKVV 102 (220)
Q Consensus 45 ~VvKP~~a~Gs~~sh~m~lv~~~-~~L~~~-----~~p~vvQefI~h~g~~---~KV--~ViG~~v~~~ 102 (220)
-|.||+.| . ++-++.++.+. +.+... +.++|.|||++-+-.. +-| +||||.....
T Consensus 299 yv~KPl~g--R-EGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v~d~~cG~ 364 (387)
T COG0754 299 YVRKPLFG--R-EGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVVGDEACGI 364 (387)
T ss_pred hhcccccc--c-cCCCeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEECccccee
Confidence 69999994 3 56689999874 444433 5689999999854222 222 4666776543
No 126
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=29.39 E-value=1.2e+02 Score=26.80 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEEEe
Q 027695 150 PLLERLAKELRRQLGLRLFNLDIIRE 175 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l~G~Dvi~~ 175 (220)
..+.+--.+-.+.+|+.-+=+|+++.
T Consensus 13 ~kV~~~l~~kv~~~~~ed~i~~v~Vp 38 (258)
T TIGR01956 13 DEVIENIKAKVRALGLENYISDFKIL 38 (258)
T ss_pred HHHHHHHHHHHHhCCCccEEEEEEEe
Confidence 33444444455779999877888774
No 127
>PRK14683 hypothetical protein; Provisional
Probab=29.36 E-value=1.7e+02 Score=22.86 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCCCCCCCCc----hhHHHHHHHHHHhhhc
Q 027695 150 PLLERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPGYGKMPEY----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~----~~~l~~~i~~~~~~~~ 215 (220)
...+++|.+--+.-|..+ .| +|+|...+ +.+++|||-+- .+...... ...|......|+....
T Consensus 17 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDIIa~~~--~~lVFVEVKtR-~~g~~eaVt~~K~~ri~~aA~~yL~~~~ 92 (122)
T PRK14683 17 YLGEVLIILFLKCKLYHIIKHRYRCPLGEIDIIAHKN--KQLVFIEVKTS-LFNKNIPITYKQQKSILKSAKYFIAFHR 92 (122)
T ss_pred HHHHHHHHHHHHHCCCEEEeeecCCCCCcEEEEEEeC--CEEEEEEEeec-CCCcccCCCHHHHHHHHHHHHHHHHHCC
Confidence 346778888888888875 46 99999764 47999999986 44332222 2456666777775443
No 128
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.38 E-value=1.9e+02 Score=26.79 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=44.3
Q ss_pred CCcEEEeecccCCCCccccceeeeChhhhhcc----------CCCeEEEeecCCCCeEEEEEE--ECCeEEEEE
Q 027695 42 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----------EPPLVLQEFVNHGGVLFKVYI--VGEAIKVVR 103 (220)
Q Consensus 42 ~~P~VvKP~~a~Gs~~sh~m~lv~~~~~L~~~----------~~p~vvQefI~h~g~~~KV~V--iG~~v~~~~ 103 (220)
.=|+=+||..|+ ++++=.+|.+.++|+.+ ...+|++|-+. +-..|.|.- |++.+..+.
T Consensus 136 ~G~VRlKp~~a~---gG~GQ~vv~~~~~Ld~~L~~~~~~~l~~~GlVLE~~L~-~~~T~SVGqv~v~g~~~SY~ 205 (355)
T PF11379_consen 136 DGPVRLKPVHAT---GGRGQQVVADADELDAALAALDDAELARHGLVLEEDLE-EVVTYSVGQVRVAGLVASYY 205 (355)
T ss_pred cCCeeeccCccc---CCCCceEecCHHHHHHHHHcCCHHHHHhCCEEEecccC-CCceeeEEEEEECCEEEEEe
Confidence 568999999976 67788999999998763 24689999997 346677654 478777654
No 129
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=27.64 E-value=74 Score=26.43 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEEEeCCCCCeEEEEEecCCCC-----CCCCCCchhHHHHHHHHHHhhh
Q 027695 150 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG-----YGKMPEYEHIFTDFLLSLTQSR 214 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l~G~Dvi~~~~~~~~~~ViEVN~fPg-----~~g~~~~~~~l~~~i~~~~~~~ 214 (220)
+-...=|+.+++.++.- +|.|+ +| ++|--.|.||| |-|-..-...-.+.|++.++..
T Consensus 47 enA~~KA~~~~~~~~~p-----vi~dD-SG--L~v~aL~g~PG~~s~r~~g~~~~~~~~~~~ll~~l~~~ 108 (189)
T PF01725_consen 47 ENALIKAKAAAQQLGKP-----VIADD-SG--LEVDALNGFPGVYSARFAGPEATDEEGNEKLLKLLSGL 108 (189)
T ss_dssp HHHHHHHHHHHHHHSSS-----EEEEE-EE--EEEGGGTTTBGGGHCCCC-TTS-HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCC-----EEEeC-cE--EeHhhhCCCcCCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 44556678888888887 66664 55 77777999999 3332222566677777777654
No 130
>PRK14681 hypothetical protein; Provisional
Probab=26.13 E-value=68 Score=26.23 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCCCC-CCCC--c----hhHHHHHHHHHHhh
Q 027695 150 PLLERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPGYG-KMPE--Y----EHIFTDFLLSLTQS 213 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg~~-g~~~--~----~~~l~~~i~~~~~~ 213 (220)
...+++|.+.-+.-|..+ +| +|+|...+++ .+++|||-+-.+-. |.|. . ...|......|+..
T Consensus 47 ~~gE~~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~-~LVFVEVKtR~~~~~g~p~eaVt~~Kqrrl~raA~~yL~~ 125 (158)
T PRK14681 47 ALGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEY-TIVFVEVKTRRSMHYGYPQEAVTAAKQHNLRKAACDWLLE 125 (158)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCc-eEEEEEEEeccCCCCCChHHcCCHHHHHHHHHHHHHHHHh
Confidence 456778888888888875 35 9999986433 69999999876532 2222 1 24666777777755
Q ss_pred h
Q 027695 214 R 214 (220)
Q Consensus 214 ~ 214 (220)
.
T Consensus 126 ~ 126 (158)
T PRK14681 126 R 126 (158)
T ss_pred C
Confidence 3
No 131
>PRK14680 hypothetical protein; Provisional
Probab=24.82 E-value=1.6e+02 Score=23.31 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCcee--------E-EEEEEeCCCCCeEEEEEecCCCC--CCCCCCc------hhHHHHHHHHHHh
Q 027695 150 PLLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGKMPEY------EHIFTDFLLSLTQ 212 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l~--------G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g~~~~------~~~l~~~i~~~~~ 212 (220)
..-+++|.+.-+..|.++. | +|+|...+ +.+++|||-+--+ |.. |.. ...|......|+.
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~lVFVEVKtR~~~~~g~-p~eaV~~~K~~ri~raA~~yL~ 86 (134)
T PRK14680 10 QHGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDG--DTIVFVEVKTRAAHGLTS-PTDALTHSKRHRLIRAARAWLA 86 (134)
T ss_pred HHHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEeC--CEEEEEEEEecCCCCCCC-hHHhCCHHHHHHHHHHHHHHHH
Confidence 3467788888888888753 5 99999753 4799999998654 332 211 2456666667775
Q ss_pred hh
Q 027695 213 SR 214 (220)
Q Consensus 213 ~~ 214 (220)
..
T Consensus 87 ~~ 88 (134)
T PRK14680 87 AH 88 (134)
T ss_pred hC
Confidence 43
No 132
>PRK14678 hypothetical protein; Provisional
Probab=24.79 E-value=1.7e+02 Score=22.66 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCCCCCCCCc----hhHHHHHHHHHHhhhc
Q 027695 150 PLLERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPGYGKMPEY----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~----~~~l~~~i~~~~~~~~ 215 (220)
..-+++|.+.-+.-|.++ +| +|+|...+ +.+++|||-+--+....... ...|......|+....
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~lvFVEVKtR~~~~~~eaV~~~K~~ri~~~A~~yL~~~~ 86 (120)
T PRK14678 10 DWGEQVAAAYLERCGYTIIARNWRCRAGEIDIVAREG--DQLVFVEVRTRRDQDALESITLAKRQRLVALAYHYLAAHD 86 (120)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeecCCCCCEeeeEEeC--CEEEEEEEEECCCCCccccCCHHHHHHHHHHHHHHHHhCC
Confidence 345777777777778775 45 99999763 47999999998776522222 2456666677775543
No 133
>PRK14679 hypothetical protein; Provisional
Probab=24.47 E-value=3.5e+02 Score=21.19 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCcee--------E-EEEEEeCCCCCeEEEEEecCCCCCCCCCC-c----hhHHHHHHHHHHhhhc
Q 027695 150 PLLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPGYGKMPE-Y----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l~--------G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~-~----~~~l~~~i~~~~~~~~ 215 (220)
..-+++|.+.-+.-|.++. | +|+|...+ +.+++|||=+-.+...-.. . ...|......|+....
T Consensus 19 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~lVFVEVKtR~~~~~~~eaV~~~K~~ri~~aA~~yL~~~~ 96 (128)
T PRK14679 19 LSAEGLALLALMLKGYRPLARRFAAAGGEIDLIVRRG--RTIAFVEVKARATLDAAATAIDARKRARFSRAARAWLARHP 96 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEeeeccCCCCeEEEEEEeC--CEEEEEEEEecCCCCChhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 3467788888888898864 6 99999763 4799999998877542111 1 2466667777775543
No 134
>COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.41 E-value=3.4e+02 Score=20.99 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCC--CCCCC-Cc----hhHHHHHHHHHHhhh
Q 027695 151 LLERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPG--YGKMP-EY----EHIFTDFLLSLTQSR 214 (220)
Q Consensus 151 ~~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g~~-~~----~~~l~~~i~~~~~~~ 214 (220)
..+.+|.+--+..|+.+ +| +|+|...+ +.+++|||=+-=+ |.+.. .. ...+.....-|+.++
T Consensus 7 ~~E~~A~~~L~~~G~~il~rN~r~r~GEIDlIa~~~--~~ivFVEVK~R~~~~~g~a~~aV~~~K~~ki~~aA~~~La~~ 84 (114)
T COG0792 7 AGEDLAARFLESKGLRILARNWRCRYGEIDLIARDG--DTVVFVEVKYRRNDLYGGAAEAVTPRKQRKLRRAARLWLARQ 84 (114)
T ss_pred HHHHHHHHHHHHcCcchhhhhccCCCCceEEEEecC--CEEEEEEEEeeccCCccchHHhCCHHHHHHHHHHHHHHHhhC
Confidence 45667777777777764 57 99999863 4789999988777 23322 22 246666667777666
Q ss_pred c
Q 027695 215 Y 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 85 ~ 85 (114)
T COG0792 85 P 85 (114)
T ss_pred C
Confidence 5
No 135
>PRK14677 hypothetical protein; Provisional
Probab=24.25 E-value=2e+02 Score=21.77 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCCCCCCCCc-----hhHHHHHHHHHHhhhc
Q 027695 152 LERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPGYGKMPEY-----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 152 ~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg~~g~~~~-----~~~l~~~i~~~~~~~~ 215 (220)
-+++|.+.-+.-|..+ +| +|+|...+ +.+++|||=+-.++..-... ...+......++.+..
T Consensus 6 ~E~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~~~--~~lvFVEVK~~~~~~~~~eaV~~~K~~ri~~aA~~yl~~~~ 81 (107)
T PRK14677 6 AEELACKFLKKKGYKILERNYRTKYGEIDIVARDG--REIVFVEVKSGSGKVDPLERIDLKKVRNLEQTARFYMIQNK 81 (107)
T ss_pred HHHHHHHHHHHCCCEEEEEEecCCCceeeEEEEEC--CEEEEEEEecCCCCcChHHCCCHHHHHHHHHHHHHHHHhCC
Confidence 4666777777777764 35 99999763 47999999874444321111 1345555666665433
No 136
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=23.79 E-value=92 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.6
Q ss_pred CceeE-EEEEEeCCCCCeEEEEEecC
Q 027695 165 LRLFN-LDIIREHGTRDQFYVIDINY 189 (220)
Q Consensus 165 l~l~G-~Dvi~~~~~~~~~~ViEVN~ 189 (220)
.+++| ||+..+. +| .+.++|.|+
T Consensus 105 ~slyGRfDfa~dg-~g-~~KllE~NA 128 (397)
T PHA02117 105 WGLYGRFDLIMTP-NG-GPKMLEYNA 128 (397)
T ss_pred CcEEEEEEEEEcC-CC-CeEEEEecC
Confidence 47999 9999984 33 589999993
No 137
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=22.73 E-value=92 Score=22.83 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCC--CCC-CCCc----hhHHHHHHHHHHhhhc
Q 027695 153 ERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPG--YGK-MPEY----EHIFTDFLLSLTQSRY 215 (220)
Q Consensus 153 ~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g-~~~~----~~~l~~~i~~~~~~~~ 215 (220)
+++|.+--+..|..+ +| +|+|...+ +.++++||=+--+ |.. .+.. .+.+......|+...+
T Consensus 3 E~~A~~~L~~~G~~IL~rN~r~~~GEIDiIa~~~--~~lvfVEVK~R~~~~~~~~~~~v~~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 3 EELAARYLERKGYRILERNWRCRRGEIDIIARDG--DTLVFVEVKTRSSSSFGSPEEAVDPRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEETTEEEEEEEEET--TEEEEEEEEE--------------HHHHHHHHHHHHHHHHH-G
T ss_pred HHHHHHHHHHCCCEEeeeeecCCCCcEeEEEEEc--ccEEEEEEEEeecccccCHHHHChHHHHHHHHHHHHHHHHHCC
Confidence 566666667777765 36 99999863 4799999976543 222 1111 2356666666666654
No 138
>PRK14685 hypothetical protein; Provisional
Probab=21.88 E-value=74 Score=26.59 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCcee--------E-EEEEEeCCCCCeEEEEEecCCCC--CCCCC-Cc----hhHHHHHHHHHH
Q 027695 150 PLLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGKMP-EY----EHIFTDFLLSLT 211 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l~--------G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g~~-~~----~~~l~~~i~~~~ 211 (220)
..-+++|...-+.-|+.+. | +|+|...+ +.+++|||=+--+ |..-. .. ...|......||
T Consensus 46 ~~gE~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~dg--~~LVFVEVKtR~~~~~g~a~eaVt~~KqrRI~raA~~yL 121 (177)
T PRK14685 46 QAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDG--EVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLL 121 (177)
T ss_pred HHHHHHHHHHHHHCCCEEeEeeecCCCCcEEEEEecC--CEEEEEEEeECCCCCCCChHHcCCHHHHHHHHHHHHHHH
Confidence 4567888888888888753 5 99999763 4799999998643 44321 22 245666666666
No 139
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=56 Score=31.44 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=24.1
Q ss_pred eeEEEEEEeCCCC--CeEEEEEecCCCCCCCCCCch
Q 027695 167 LFNLDIIREHGTR--DQFYVIDINYFPGYGKMPEYE 200 (220)
Q Consensus 167 l~G~Dvi~~~~~~--~~~~ViEVN~fPg~~g~~~~~ 200 (220)
.+|+|+++..+.+ -.+-|+|||+-|--+-.=.|+
T Consensus 572 mygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYh 607 (631)
T KOG2155|consen 572 MYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYH 607 (631)
T ss_pred hhhheeeeccCCCccccceeEEEecCcchHHHhhcC
Confidence 6899999965433 147899999999855444443
No 140
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=21.69 E-value=77 Score=24.53 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCC--CCCC-CCc----hhHHHHHHHHHHhhh
Q 027695 151 LLERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPG--YGKM-PEY----EHIFTDFLLSLTQSR 214 (220)
Q Consensus 151 ~~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g~-~~~----~~~l~~~i~~~~~~~ 214 (220)
.-+++|.+.-+.-|..+ +| +|+|...+ +.+++|||-+-.+ |..- ... ...+......|+.++
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~lvFVEVK~R~~~~~g~~~eaV~~~K~~ri~~aA~~yL~~~ 88 (119)
T TIGR00252 11 AGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDT--KTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLWLASQ 88 (119)
T ss_pred HHHHHHHHHHHHCCCEEeEEEecCCCCcEEEEEeeC--CEEEEEEEEecCCCCCCChHHcCCHHHHHHHHHHHHHHHHhC
Confidence 45777777777788764 45 99999753 4799999998654 3321 111 245666667777544
No 141
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.03 E-value=57 Score=26.12 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.6
Q ss_pred eEEEEEEeCCCCCeEEEEE-----ecCCCC
Q 027695 168 FNLDIIREHGTRDQFYVID-----INYFPG 192 (220)
Q Consensus 168 ~G~Dvi~~~~~~~~~~ViE-----VN~fPg 192 (220)
.|.|++..++.. ...+|| ||.|+|
T Consensus 112 aGa~vLySEDmQ-~gl~i~~~l~iVNPF~~ 140 (142)
T COG5573 112 AGADVLYSEDMQ-DGLVIEQQLTIVNPFRS 140 (142)
T ss_pred cCCceeechhcc-CCeeecccceEeCCCCC
Confidence 578888876544 357888 999997
No 142
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=20.94 E-value=2.8e+02 Score=25.42 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=25.4
Q ss_pred CCCeEEEeecCCCCeEEEEEEECC-eEEEEEEec
Q 027695 74 EPPLVLQEFVNHGGVLFKVYIVGE-AIKVVRRFS 106 (220)
Q Consensus 74 ~~p~vvQefI~h~g~~~KV~ViG~-~v~~~~R~s 106 (220)
..+.++||=| +|.=|++++-++ ++.+..|.+
T Consensus 24 ~~ewvatEKl--hGaNfsi~~~~~~~i~~akR~~ 55 (325)
T TIGR02307 24 LTEWVAREKI--HGTNFSIIIERDFKVTCAKRTG 55 (325)
T ss_pred CceEEEEEEe--cCcceEEEEeCCceEEEeeccc
Confidence 3589999999 688899999988 777777764
No 143
>PRK12497 hypothetical protein; Reviewed
Probab=20.93 E-value=74 Score=24.44 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCce--------eE-EEEEEeCCCCCeEEEEEecCCCC--CCCC-CCc----hhHHHHHHHHHHhh
Q 027695 150 PLLERLAKELRRQLGLRL--------FN-LDIIREHGTRDQFYVIDINYFPG--YGKM-PEY----EHIFTDFLLSLTQS 213 (220)
Q Consensus 150 ~~~~~lA~~l~~~lGl~l--------~G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g~-~~~----~~~l~~~i~~~~~~ 213 (220)
..-+++|.+.-+..|..+ +| +|+|...+ +.+++|||-+--+ |..- +.. ...+......|+..
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~--~~lvFVEVK~R~~~~~g~~~eav~~~K~~ri~~aA~~yL~~ 87 (119)
T PRK12497 10 AAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDG--DTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQLWLAR 87 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEcceecCCCCcEeeeEEeC--CEEEEEEEEeccCCCCCCHHHcCCHHHHHHHHHHHHHHHHh
Confidence 345777777777778764 36 99999753 4799999998766 3221 111 24666777777766
Q ss_pred h
Q 027695 214 R 214 (220)
Q Consensus 214 ~ 214 (220)
.
T Consensus 88 ~ 88 (119)
T PRK12497 88 H 88 (119)
T ss_pred C
Confidence 5
No 144
>PRK14682 hypothetical protein; Provisional
Probab=20.58 E-value=84 Score=24.24 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCce---------eE-EEEEEeCCCCCeEEEEEecCCCC--CCCCCC--c----hhHHHHHHHHHHh
Q 027695 151 LLERLAKELRRQLGLRL---------FN-LDIIREHGTRDQFYVIDINYFPG--YGKMPE--Y----EHIFTDFLLSLTQ 212 (220)
Q Consensus 151 ~~~~lA~~l~~~lGl~l---------~G-~Dvi~~~~~~~~~~ViEVN~fPg--~~g~~~--~----~~~l~~~i~~~~~ 212 (220)
..+++|.+.-+.-|..+ +| +|+|...+ +.+++|||-+-.+ |.. |. . ...+......|+.
T Consensus 9 ~gE~~A~~~L~~~Gy~Il~rN~r~~~~GEIDiIa~~~--~~lvFVEVKtR~~~~~g~-~~eaV~~~K~~ri~~aA~~yL~ 85 (117)
T PRK14682 9 KAELQACKFLHTQALEILAHNFKALPYGEIDIIALDK--DTLVFIEVKYRSKTKFAQ-AEEMLTYSKQQKLVNSASIYLQ 85 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeeEECCCCCcEEEEEeeC--CEEEEEEEEecCCCCCCC-hHHcCCHHHHHHHHHHHHHHHH
Confidence 35666666666666642 45 99999753 4799999998764 332 22 1 2466667777775
Q ss_pred hhc
Q 027695 213 SRY 215 (220)
Q Consensus 213 ~~~ 215 (220)
..+
T Consensus 86 ~~~ 88 (117)
T PRK14682 86 HNP 88 (117)
T ss_pred hCC
Confidence 443
Done!