RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027695
(220 letters)
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
Length = 328
Score = 410 bits (1056), Expect = e-146
Identities = 160/218 (73%), Positives = 182/218 (83%), Gaps = 3/218 (1%)
Query: 1 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 60
MLQ VAD+ LS+ YG V VP+QLV+ D SSIPD V AGL PLVAKPLVADGSAKSH+
Sbjct: 111 MLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHK 170
Query: 61 LSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAG 120
+SLAYDQ L KLEPPLVLQEFVNHGGVLFKVY+VG+ +K VRRFSLPDV++++LS++ G
Sbjct: 171 MSLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEG 230
Query: 121 VFRFPRVSCAAASADDAD---LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG 177
V FPRVS AAASADDAD LDP VAELPPRP LE LA+ELRR+LGLRLFN D+IREHG
Sbjct: 231 VLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHG 290
Query: 178 TRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRY 215
T D++YVIDINYFPGY KMP YE + TDFLLSL Q +Y
Sbjct: 291 TGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKKY 328
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate
5/6-kinase. This family consists of several inositol 1,
3, 4-trisphosphate 5/6-kinase proteins. Inositol
1,3,4-trisphosphate is at a branch point in inositol
phosphate metabolism. It is dephosphorylated by specific
phosphatases to either inositol 3,4-bisphosphate or
inositol 1,3-bisphosphate. Alternatively, it is
phosphorylated to inositol 1,3,4,6-tetrakisphosphate or
inositol 1,3,4,5-tetrakisphosphate by inositol
trisphosphate 5/6-kinase.
Length = 307
Score = 347 bits (892), Expect = e-122
Identities = 138/211 (65%), Positives = 162/211 (76%), Gaps = 2/211 (0%)
Query: 1 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 60
MLQ VAD+NLS G+ VP Q+V+ +DASS+ KAGLT PL+AKPLVADG+AKSHE
Sbjct: 97 MLQVVADLNLSMEDGRFGVPPQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHE 156
Query: 61 LSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAG 120
+SL YDQ L KL+PPLVLQEFVNHGGVLFKVY+VGE + VV+R SLPDV+ L S+G
Sbjct: 157 MSLVYDQEGLNKLQPPLVLQEFVNHGGVLFKVYVVGEHVTVVKRRSLPDVSAGTLDRSSG 216
Query: 121 VFRFPRVSCAAASADDADLD--PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGT 178
FRF +VS ASADDA+LD +AE+PP P LE LA+ LRR LGLRLFN DIIR+ GT
Sbjct: 217 SFRFSQVSNLTASADDAELDKILEIAEMPPDPFLEDLARALRRALGLRLFNFDIIRDAGT 276
Query: 179 RDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 209
D++ VIDINYFPGY KMPEYE + TDF S
Sbjct: 277 ADRYLVIDINYFPGYAKMPEYETVLTDFFWS 307
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 38.5 bits (90), Expect = 0.001
Identities = 42/200 (21%), Positives = 62/200 (31%), Gaps = 39/200 (19%)
Query: 16 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLE- 74
+ VP L+ + V L P+V KPL G L D L LE
Sbjct: 131 GIPVPPTLITRDPDEAAEFV--AEHLGFPVVLKPLDGSGGRGVF-LVEDADPELLSLLET 187
Query: 75 ------PPLVLQEFVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSAGVFRF 124
+++QE++ + +VG AI + R + +L+
Sbjct: 188 LTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPASGDFRSNLARGGRAEPC 247
Query: 125 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYV 184
EL E LA + LGL L +DII +D YV
Sbjct: 248 --------------------ELTEE--EEELAVKAAPALGLGLVGVDIIE---DKDGLYV 282
Query: 185 IDINYFPGYGKMPEYEHIFT 204
++N P E
Sbjct: 283 TEVNVSPTGKGEIERVTGVN 302
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 36.5 bits (85), Expect = 0.005
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 35/187 (18%)
Query: 17 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH------ELSLAYDQYSL 70
+ VP +++ D + + G P+V KP GS EL A +
Sbjct: 17 LPVPPFFLVD-DEEDLDAAAEEIGF--PVVLKPRDGAGSLGVFRVDSAAELEAALAALAA 73
Query: 71 KK-LEPPLVLQEFVNHGGVLFKV--YIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 127
+ +++E++ G + V + + + V
Sbjct: 74 EVEDTREYLVEEYI--DGDEYHVDGLVDDGELVFLGVS--------RYLGPPPPDFSEGV 123
Query: 128 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVI 185
+ S E P L LA+ + + LGLR +F+L+ R ++
Sbjct: 124 ELGSVS---------PGEDPLPEALRELAERVLKALGLRNGVFHLEFFLTPDGR--PVLL 172
Query: 186 DINYFPG 192
+IN PG
Sbjct: 173 EINPRPG 179
>gnl|CDD|221300 pfam11898, DUF3418, Domain of unknown function (DUF3418). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 582 to 594 amino acids in length. This domain is
found associated with pfam07717, pfam00271, pfam04408.
Length = 586
Score = 31.3 bits (72), Expect = 0.40
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 142 CVAELPPR--PLLERLAKELRRQLGLRL----FNLDIIREHGTRDQFYVID 186
+ L P PLL+ LA+ELRR G+R+ ++L+ + H R F V+D
Sbjct: 218 FLEALEPGEGPLLDALARELRRMTGVRIPPDDWDLEALPPH-LRMNFRVVD 267
>gnl|CDD|130780 TIGR01719, euk_UDPppase, uridine phosphorylase. This model
represents a clade of mainly eucaryotic uridine
phosphorylases. Genes from human and mouse have been
characterized. This enzyme is a member of the PHP/UDP
subfamily (pfam01048) and is closely related to the
bacterial uridine (TIGR01718) and inosine (TIGR00107)
phosphorylase equivalogs. In addition to the eukaryotes,
a gene from Mycobacterium leprae is included in this
equivalog and may have resulted from lateral gene
transfer [Purines, pyrimidines, nucleosides, and
nucleotides, Salvage of nucleosides and nucleotides].
Length = 287
Score = 30.5 bits (69), Expect = 0.53
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 46 VAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIV-GEAIKVVRR 104
V L +S D++++ K+ P L V+HG + + I+ E IK++
Sbjct: 50 VGAELGLSCGRDYPNISERGDRFAMYKVGPVL----CVSHGMGIPSISIMLHELIKLLYY 105
Query: 105 FSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 141
+ T + TS G+ P ++ A DA L P
Sbjct: 106 ARCKNPTFIRIGTSGGIGVPPGTVVVSSEAVDACLKP 142
>gnl|CDD|179554 PRK03204, PRK03204, haloalkane dehalogenase; Provisional.
Length = 286
Score = 29.1 bits (65), Expect = 1.6
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 143 VAELP-----PRPLLERLAKELRRQLG 164
VAE+P RPLL RLA+E+ LG
Sbjct: 200 VAEMPKQILAARPLLARLAREVPATLG 226
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 29.0 bits (65), Expect = 2.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 150 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGY 193
L++ LAK LRR+ G + +I +G++ F+ + N F G
Sbjct: 78 VLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYL-FNLFAGR 120
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 27.6 bits (62), Expect = 2.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 149 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVID---INYFPGYGKMP-EYEH 201
P E+LAKEL+ + + +D + ++ V I FP K P +YE
Sbjct: 34 APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEG 90
>gnl|CDD|235550 PRK05660, PRK05660, HemN family oxidoreductase; Provisional.
Length = 378
Score = 28.7 bits (65), Expect = 2.6
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 156 AKELRRQLGLRLFNLDIIREHGTRDQ 181
A +L + LGLR FNLD++ HG DQ
Sbjct: 148 AAKLAQGLGLRSFNLDLM--HGLPDQ 171
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 28.5 bits (63), Expect = 3.8
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 2 LQCVADMNLSNSYGKVDVPR----QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 57
+ C +++ S + G V++ R Q +I R A I +V++ L + KP G+
Sbjct: 237 MPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGL 296
Query: 58 SHELSLAYDQY 68
S + L+Y +
Sbjct: 297 SDKCVLSYGAF 307
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 28.1 bits (63), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 150 PLLERLAKELRRQLGLRL----FNLDIIREHGTRDQFYVID 186
PLL+ L +ELRR G+ + + D + +H + F V+D
Sbjct: 934 PLLDSLERELRRMTGVTVDREDWQWDQVPDH-LKITFRVVD 973
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 27.3 bits (61), Expect = 7.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 123 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF 168
R + S D+ ++P R + LA L Q G+
Sbjct: 126 RLDGLRGGLHSPDELRVEP-------REAIPALAAYLAEQHGVEFH 164
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 27.1 bits (60), Expect = 8.6
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 17 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA-----KSHELSLAYDQYSLK 71
+DVPR + A ++ GLT P+V KP + GS S + A+ +
Sbjct: 120 IDVPRTHALALRAVALD---ALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR 176
Query: 72 KLEPPLVLQEFVNHGGVLFKVYIVGEA-----IKVVRRF 105
++Q +V G + V + A + + R+
Sbjct: 177 AGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKH 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.405
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,614,430
Number of extensions: 1134771
Number of successful extensions: 1049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 28
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)