RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027695
(220 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 221 bits (565), Expect = 4e-72
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 5/223 (2%)
Query: 1 MLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 59
+ + + ++ P + + ++ K GLT P + K VA G+ SH
Sbjct: 120 SYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSH 178
Query: 60 ELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSA 119
E+++ ++Q L ++PP V+Q F+NH VL+KV++VGE+ VV+R SL + + +
Sbjct: 179 EMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRES 238
Query: 120 GVFRFPRVSCAAASADDADLDPC--VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG 177
F VS +S+ +LD V E P ++ L++ LR+ LG+ LF +DII +
Sbjct: 239 IFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ 298
Query: 178 TRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC 220
T Q VIDIN FPGY + E+ + + ++ Q + +
Sbjct: 299 T-GQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAA 340
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 192 bits (489), Expect = 5e-61
Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 18/224 (8%)
Query: 7 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 66
++N + +P ++ + ++ L LP + KP A G+ +H++ + +
Sbjct: 101 EINALLIKNNIPIPNSFSVKSKEE-VIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLE 159
Query: 67 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST-------SA 119
Q + + P + Q ++NH + KV+ +G +K R SLP+V + + +
Sbjct: 160 QEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLE 219
Query: 120 GVFRFPRV---------SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNL 170
+ +P + A DP + L + LA ++R LG++L +
Sbjct: 220 DILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGI 279
Query: 171 DIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSR 214
D I+E+ + V+D+N FP YG +++ L T+
Sbjct: 280 DFIKENEQGN-PLVVDVNVFPSYGGKVDFDWFVEKVALCYTEVA 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 4e-05
Identities = 36/246 (14%), Positives = 72/246 (29%), Gaps = 72/246 (29%)
Query: 21 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEP----- 75
+ L+ R + D + A T + + + L L Y + L
Sbjct: 267 KILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 76 -PLV-------LQEFVNHGGVLFKVY--IVGEAIKVVRRFSL----PDVTKQ---DLSTS 118
P +++ + + + + + + + SL P ++ LS
Sbjct: 326 NPRRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-- 379
Query: 119 AGVFR---------FPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR-----RQLG 164
VF + +D + V +L L+E+ KE L
Sbjct: 380 --VFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 165 LRLFNLD-------IIREHGTRDQFYVIDI------NYF---PGY--------GKMPEYE 200
L++ + I+ + F D+ YF G+ +M +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 201 HIFTDF 206
+F DF
Sbjct: 495 MVFLDF 500
Score = 29.8 bits (66), Expect = 0.74
Identities = 43/236 (18%), Positives = 72/236 (30%), Gaps = 85/236 (36%)
Query: 21 RQLVIERDASSIPDVVLKA-----------GLTLPLVAKPLVADGSAKS----HELSLAY 65
+L + ++ IP ++L + L LV +S + L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 66 ---------------DQYSLKK------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRR 104
D Y++ K L PP + Q F +H G K E + + R
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 105 FSLPDVTKQDLSTSAGVFRFP----RVSCAAASADDADLDPCVAELPPRPLLERLAKELR 160
L D FRF R A +A + L+ L++
Sbjct: 496 VFL-D------------FRFLEQKIRHDSTAWNASGSILN----------TLQQ------ 526
Query: 161 RQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHI-----FTDFL-LSL 210
L+ + I ++ V I F +P+ E +TD L ++L
Sbjct: 527 ----LKFYKPYICDNDPKYER-LVNAILDF-----LPKIEENLICSKYTDLLRIAL 572
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 38.2 bits (89), Expect = 0.001
Identities = 28/185 (15%), Positives = 59/185 (31%), Gaps = 39/185 (21%)
Query: 17 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL-------VADGSAKSHELSLAYDQYS 69
+ P+ + D ++ G P+V KP+ +A +
Sbjct: 101 LPQPKTALAT-DREEALRLMEAFGY--PVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEV 157
Query: 70 LKKLE-PPLVLQEFVNHGGVLFKVYIVG-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 127
L + +QE+V G +V++VG AI + R + +
Sbjct: 158 LGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYR-------------RSAHWI---- 200
Query: 128 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDI 187
+A + C P + RL+ + +G + +D+ + V ++
Sbjct: 201 ---TNTARGGQAENC----PLTEEVARLSVKAAEAVGGGVVAVDLFE---SERGLLVNEV 250
Query: 188 NYFPG 192
N+
Sbjct: 251 NHTME 255
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 36.7 bits (85), Expect = 0.004
Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 28/160 (17%)
Query: 30 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 89
+S + + + LP+ KP S + + + L L++QE + +
Sbjct: 137 ASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLVGQELG 196
Query: 90 FKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPR 149
Y+ + KV F + ++ + + + R
Sbjct: 197 VDAYVDLISGKVTSIF----IKEKLTMRAG--------------------ETDKSRSVLR 232
Query: 150 PLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDIN 188
+ L + + GL + D+ G Y+ +IN
Sbjct: 233 DDVFELVEHVLDGSGLVGPLDFDLFDVAG---TLYLSEIN 269
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 36.5 bits (84), Expect = 0.004
Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 56/236 (23%)
Query: 16 KVDVPRQLVIERDASSIPDVVLKAG----------LTLPLVAKPLVAD------------ 53
+ +PR ++ RD ++ + L G P V KP+ A+
Sbjct: 109 GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSA 168
Query: 54 --GSA----KSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVG-EAIKVVRRFS 106
GS K S Y S + + +EF+ G KVY VG + R S
Sbjct: 169 GGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS 228
Query: 107 LPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR 166
K + + R+P L R + +A ++
Sbjct: 229 PALDGKVERDSEGKEVRYP------------------VILNAR--EKLIAWKVCLAFKQT 268
Query: 167 LFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY----EHIFTDFLLSLTQSRYKKK 218
+ D++R +G Q YV D+N F +Y I + ++ ++
Sbjct: 269 VCGFDLLRANG---QSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQFHIP 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.032
Identities = 34/244 (13%), Positives = 78/244 (31%), Gaps = 87/244 (35%)
Query: 8 MNLSNSYGKVDVPRQLVIERDAS-------SIPDVVLKAGLTLPLVAKPLVADGSAKSHE 60
M+L Y + + D SI D+V+ + L + G K
Sbjct: 1633 MDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------TIHFGGEKGKR 1683
Query: 61 L-----SLAYDQYSLKKLEPPLVLQE---------FVNHGGVLFK-------VYIVGEAI 99
+ ++ ++ KL+ + +E F + G+L + ++ +A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 100 -KVVR-RFSLPDVTKQD-------------LSTSAGVFRF------------------PR 126
+ ++ + +P D L++ A V PR
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 127 VSCAAASADDADLDP-CVAELPPRPLLERLAKELRRQLGLRL----FNLDIIREHGTRDQ 181
++ ++P VA + L+ + + + ++ G + +N++ +Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--------NQ 1851
Query: 182 FYVI 185
YV
Sbjct: 1852 QYVA 1855
Score = 32.7 bits (74), Expect = 0.086
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 28/112 (25%)
Query: 56 AKSHELSLAYDQYSLKKLEPPLVLQEFVNHG-GV----LFKVYIVGEAIKVVRRFSLPDV 110
+ +E AY SL PP +L++ + + GV L + + V
Sbjct: 308 VRCYE---AYPNTSL----PPSILEDSLENNEGVPSPML-----------SISNLTQEQV 349
Query: 111 TKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 162
T++ + +V + + V PP+ L L LR+
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKN----LVVSGPPQS-LYGLNLTLRKA 396
>3lr0_A Sensor protein; niaid, seattle structural genomics center for
infectious DIS ssgcid, PH, RISS, iodide phased,
burkholder melioidosis; 1.90A {Burkholderia
pseudomallei} PDB: 3lr3_A 3lr5_A
Length = 143
Score = 28.7 bits (64), Expect = 0.90
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 113 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 172
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 63 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 108
Query: 173 IREHGTRDQFYV 184
+ ++
Sbjct: 109 AQSVNDIPGVWI 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 39/67 (58%)
Query: 66 DQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP 125
++ +LKKL+ L K+Y A D SA P
Sbjct: 18 EKQALKKLQASL-------------KLY----A---------DD--------SA-----P 38
Query: 126 RVSCAAA 132
++ A
Sbjct: 39 ALAIKAT 45
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Length = 127
Score = 27.9 bits (62), Expect = 1.4
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 113 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 172
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 47 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 92
Query: 173 IREHGTRDQFYV 184
+ ++
Sbjct: 93 AQSVNDIPGVWI 104
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system,
NF-KB signaling, alternative splicing, apoptosis,
cytoplasm, differentiation; NMR {Rattus norvegicus} PDB:
2ktr_B
Length = 102
Score = 25.4 bits (55), Expect = 8.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 88 VLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 127
+ K Y++G EA + +RRFS + + +AG R+
Sbjct: 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERL 47
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 26.4 bits (58), Expect = 9.1
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 85 HGGVLFKVYIVGEAIKVVRRFSL----PDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 140
HG + + + G F + P +T Q L V A A+
Sbjct: 232 HGVRMVRKGVSGSTQNQRMSFDMEINNPALTGQVL-----------VCAARAAMRQQPGA 280
Query: 141 PCVAELPPRPLLERLAKELRRQL 163
+ E+P LL ++ +L
Sbjct: 281 YTLQEIPVIDLLPGDREQWIGKL 303
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.405
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,486,368
Number of extensions: 214916
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 20
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)