RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027695
         (220 letters)



>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 327

 Score = 28.7 bits (63), Expect = 0.51
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 30 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 89
          + IP          P V  P  A     +  L L        K +   +       G VL
Sbjct: 6  TPIPQQKHYESKPFPAVISPPSASIPIPALSLPLFTQ---TIKTQKHYLDSLLHESGAVL 62

Query: 90 FK 91
          F+
Sbjct: 63 FR 64


>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
           [TaxId: 354]}
          Length = 179

 Score = 27.7 bits (61), Expect = 0.89
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 153 ERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE-----YEHIFTDFL 207
           + + K    +      N++ +         ++I      G G++P          + +FL
Sbjct: 19  KSIKKRFDDETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFL 78

Query: 208 LSLTQSRYKKKSC 220
             +    +  K+ 
Sbjct: 79  PKIEGLDFSGKTV 91


>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 293

 Score = 27.9 bits (61), Expect = 1.1
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 136 DADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQF--YVIDINYFP-G 192
             D   C++E+    + +R+A++  R+LG +  N+D       RD     V D   FP G
Sbjct: 26  REDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRDAEGRLVPDPERFPRG 85

Query: 193 YGKMPEYEH 201
              + +Y H
Sbjct: 86  IKALADYVH 94


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
           ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 26.9 bits (58), Expect = 1.9
 Identities = 2/16 (12%), Positives = 7/16 (43%)

Query: 178 TRDQFYVIDINYFPGY 193
           +     V ++N+   +
Sbjct: 153 SERGLLVNEVNHTMEF 168


>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 273

 Score = 26.7 bits (58), Expect = 2.1
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 149 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQF--YVIDINYFPGYGK-MPEYEHIF 203
           R   + L      +LG +  N+D      +RD    +V +   FP   K + +Y H  
Sbjct: 29  RETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAK 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 831,742
Number of extensions: 38946
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 9
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)