Query 027696
Match_columns 220
No_of_seqs 201 out of 770
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 13:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00173 60S ribosomal protein 100.0 2E-101 5E-106 668.2 21.7 211 1-211 1-211 (213)
2 KOG0857 60s ribosomal protein 100.0 1E-79 2.2E-84 530.2 7.6 210 1-210 1-211 (212)
3 TIGR00279 L10e ribosomal prote 100.0 3.5E-77 7.6E-82 503.9 18.3 171 1-174 1-171 (172)
4 PRK04199 rpl10e 50S ribosomal 100.0 1.7E-74 3.7E-79 487.7 18.0 169 1-172 1-169 (172)
5 COG0197 RplP Ribosomal protein 100.0 4.2E-50 9E-55 331.7 14.3 141 12-174 2-144 (146)
6 cd01433 Ribosomal_L16_L10e Rib 100.0 6.3E-35 1.4E-39 229.6 12.6 109 44-166 4-112 (112)
7 PF00252 Ribosomal_L16: Riboso 100.0 4.8E-35 1E-39 237.3 11.8 132 5-167 1-133 (133)
8 PRK09203 rplP 50S ribosomal pr 100.0 3.8E-33 8.3E-38 228.3 12.6 104 49-168 31-134 (138)
9 CHL00044 rpl16 ribosomal prote 100.0 2.5E-32 5.5E-37 223.1 12.4 105 48-168 30-134 (135)
10 TIGR01164 rplP_bact ribosomal 100.0 1.9E-32 4.1E-37 221.3 11.4 98 48-161 29-126 (126)
11 KOG3422 Mitochondrial ribosoma 99.8 5.7E-19 1.2E-23 153.9 9.9 108 49-169 70-177 (221)
12 PF07831 PYNP_C: Pyrimidine nu 76.8 5.5 0.00012 29.6 4.5 28 128-155 43-71 (75)
13 PRK10380 hypothetical protein; 53.1 13 0.00027 27.4 2.3 38 13-56 3-44 (63)
14 COG0504 PyrG CTP synthase (UTP 46.5 23 0.00049 35.6 3.7 52 146-198 305-356 (533)
15 PF13533 Biotin_lipoyl_2: Biot 43.7 27 0.00058 23.6 2.7 14 128-141 23-36 (50)
16 cd00992 PDZ_signaling PDZ doma 43.6 36 0.00078 23.5 3.5 35 120-155 36-73 (82)
17 PF02391 MoaE: MoaE protein; 33.0 1E+02 0.0023 24.4 4.9 32 124-155 78-109 (117)
18 COG1242 Predicted Fe-S oxidore 31.9 51 0.0011 31.1 3.4 47 46-102 182-228 (312)
19 PF04019 DUF359: Protein of un 30.3 1.5E+02 0.0033 24.0 5.5 45 28-72 11-58 (121)
20 smart00380 AP2 DNA-binding dom 27.9 61 0.0013 22.7 2.5 50 124-182 12-63 (64)
21 PRK15052 D-tagatose-1,6-bispho 27.3 1.5E+02 0.0033 29.2 5.8 51 134-187 15-70 (421)
22 PRK15458 tagatose 6-phosphate 27.1 1.5E+02 0.0033 29.2 5.8 51 134-187 18-73 (426)
23 cd03777 MATH_TRAF3 Tumor Necro 25.6 1.9E+02 0.0041 24.9 5.6 106 80-200 70-182 (186)
24 cd00756 MoaE MoaE family. Memb 24.6 1.3E+02 0.0028 24.3 4.2 35 127-161 73-111 (124)
25 cd04883 ACT_AcuB C-terminal AC 24.3 1.3E+02 0.0028 20.4 3.6 28 132-159 41-68 (72)
26 cd04906 ACT_ThrD-I_1 First of 23.9 86 0.0019 22.9 2.8 29 131-159 39-69 (85)
27 PF04895 DUF651: Archaeal prot 23.7 86 0.0019 25.3 2.9 74 62-162 13-87 (110)
28 TIGR02810 agaZ_gatZ D-tagatose 23.3 2.1E+02 0.0045 28.2 6.0 51 134-187 14-69 (420)
29 PRK06770 hypothetical protein; 22.4 36 0.00078 29.8 0.6 39 144-187 68-106 (180)
30 COG0279 GmhA Phosphoheptose is 20.9 97 0.0021 27.2 2.9 60 89-158 71-135 (176)
31 cd04885 ACT_ThrD-I Tandem C-te 20.7 1.2E+02 0.0027 21.0 3.0 30 130-159 36-66 (68)
No 1
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=100.00 E-value=2.1e-101 Score=668.15 Aligned_cols=211 Identities=73% Similarity=1.228 Sum_probs=209.1
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
|+||||||||+|+|||||||+||+|||||||++|||||++|+|||||+|+||+|+|.+||||+||||||+|+||||.|.+
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~ 80 (213)
T PTZ00173 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRA 80 (213)
T ss_pred CCCCchhhhhcccCCCCchhhccCCCCCCcEEEEecCCCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|+++||||||+|||||||||||||||||||||+|||+|||+|+||||||++||+||||+++++++++|+|||++|++|||
T Consensus 81 Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP 160 (213)
T PTZ00173 81 GKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFP 160 (213)
T ss_pred CCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecccCccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCCC
Q 027696 161 GRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQP 211 (220)
Q Consensus 161 ~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~~~~gpl~~~~~ 211 (220)
++|+|+++++||||+|+++||++|+++|+|++|||+||++++||||++|..
T Consensus 161 ~~~kIv~~~~wgft~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~ 211 (213)
T PTZ00173 161 GRQKIVVSNKWGFTNYTREEYQKLRAEGKLIQDGVHVKLISPKGPLTKVNP 211 (213)
T ss_pred CeEEEEEecccCccccCHHHHHHHHHCCeEecCCceEEEeCCCCChhhhhc
Confidence 999999999999999999999999999999999999999999999999953
No 2
>KOG0857 consensus 60s ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-79 Score=530.25 Aligned_cols=210 Identities=73% Similarity=1.173 Sum_probs=208.8
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
|||||+|||||++++||++++||+||||+||+|||+|.+++.+++||+|+|++++|.++|+++||||+|+++|+|+.+++
T Consensus 1 ~~~~~~~~yr~~~~~~~~ksr~~r~~p~~~~ri~d~~~~k~~~~e~~l~v~~~~~~~~~l~~~~~eA~ri~~~~~~~~~~ 80 (212)
T KOG0857|consen 1 MGRRPARCYRYSKRKPYPKSRFCRGVPDTKIRIYDLGRKKAGVDEFPLCVHLVSNEIEQLSSEALEAARICANKPMVKSK 80 (212)
T ss_pred CCCChhhhhhHHhcCCCcccccccCCCCCceeHHHhcCcCCCCcccchhhhhhhHHHHhHHHHHHHHhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecC-CceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCC
Q 027696 81 GKDAFHLRVRVHP-FHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKF 159 (220)
Q Consensus 81 Gk~~f~l~Irv~P-~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~Kl 159 (220)
|+|+||+++|+|| +||+++|||||||||||||||||++||||.|+||||++||+||||+++++|.||++|||+||++||
T Consensus 81 ~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQtgmrga~gkp~G~varV~iGqvi~Svrtk~~nkeh~ieal~rak~kf 160 (212)
T KOG0857|consen 81 GKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSVRTKLQNKEHVIEALRRAKFKF 160 (212)
T ss_pred cccchhhhhhcccchhHHHHhhhhcccchhhhhhcccccccCccceEEEEEcCceEEEeecCcccHHHHHHHHHhccccC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccCccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCC
Q 027696 160 PGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQ 210 (220)
Q Consensus 160 P~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~~~~gpl~~~~ 210 (220)
|+.|+|+++++||||+|++|||++|++++++++|||+|++++.+|||++|.
T Consensus 161 pG~qki~vs~kwgftk~~~def~~~~~~~~~~~~g~~vk~~~~~gp~~~~~ 211 (212)
T KOG0857|consen 161 PGRQKIVVSKKWGFTKFDRDEFEDLRARKRLEPDGCGVKFIPVCGPLQAII 211 (212)
T ss_pred CCceeEEeeeecCccccchhHHHHHHhhcceeccCCceeeecccCchhhcc
Confidence 999999999999999999999999999999999999999999999999984
No 3
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=100.00 E-value=3.5e-77 Score=503.92 Aligned_cols=171 Identities=59% Similarity=0.957 Sum_probs=167.6
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
|++|||||||++++|||||++||+|||++||++|||||++ +|||+|++|+++|++||||+||||||+++||||++..
T Consensus 1 m~~rp~r~Yr~~~~~~Ytr~~y~~g~P~~kI~~f~~G~~~---~~fp~~~~L~a~E~~~I~~~qiEAaR~a~~r~lkk~~ 77 (172)
T TIGR00279 1 MARRPARCYRYQKNRPYTRSEYIKGVPGSKIRIYDMGNKS---AEFPVCVHLVAKEPEQIRHNALEAARIAANKYMTRRA 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhhccCCCCCCcEEEEECCCcc---CCCCEEEEEEECccceecHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999986 4899999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|+++||+|||+|||||||+|||+|++||||||+|||+|||+|+||||+|++|||||||+++.+++++|+|||++|++|||
T Consensus 78 g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~Gqiifei~~~~~~~~~AkeAlr~A~~KLP 157 (172)
T TIGR00279 78 GRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIGQKIFSVWTKPSNFDVAKEALRRAAMKFP 157 (172)
T ss_pred CccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcCCEEEEEEeecCCHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecccCcc
Q 027696 161 GRQKIIVSRKWGFT 174 (220)
Q Consensus 161 ~~~kIv~~~~~Gft 174 (220)
++|+|+++++|+..
T Consensus 158 ~~~kiv~~~~~~~~ 171 (172)
T TIGR00279 158 VPCKIVIEKGWELL 171 (172)
T ss_pred CcEEEEEecCcccC
Confidence 99999999999853
No 4
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=100.00 E-value=1.7e-74 Score=487.67 Aligned_cols=169 Identities=49% Similarity=0.760 Sum_probs=165.1
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
|++|||||||++++|||||++||+|||++||++|||||++ +|||+|++|+++|++||||+||||||+++||||++.+
T Consensus 1 m~~rp~~~Yr~~~~~~ytr~~yi~g~P~~kI~~f~~G~~~---~~~~~~~~L~a~E~~~I~~~qiEAaR~ai~r~lkk~~ 77 (172)
T PRK04199 1 MPLRPARCYRHISKPAYTRREYIGGVPGPKIVKFDMGNLS---GDFPVEVSLVVEEPCQIRHNALEAARIAANKYLTKTV 77 (172)
T ss_pred CCCCchhhhcccCCCCCchhcccCCCCCCeEEEEecCCcC---CCCCEEEEEEEcccccccHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999977 6999999999999999999999999999999999888
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|+++||+|||+|||||||+|||+++|||||||+|||+|||+|+||||+|++|||||||+++.+++++|+|||++|++|||
T Consensus 78 G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~~KLP 157 (172)
T PRK04199 78 GRSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAAMKLP 157 (172)
T ss_pred CCcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecccC
Q 027696 161 GRQKIIVSRKWG 172 (220)
Q Consensus 161 ~~~kIv~~~~~G 172 (220)
++|+|+++++..
T Consensus 158 ~k~kiv~~~~~~ 169 (172)
T PRK04199 158 TPCRIVVEKGKE 169 (172)
T ss_pred CcEEEEEecccc
Confidence 999999988754
No 5
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-50 Score=331.70 Aligned_cols=141 Identities=35% Similarity=0.452 Sum_probs=128.3
Q ss_pred cCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEe
Q 027696 12 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRV 91 (220)
Q Consensus 12 ~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv 91 (220)
...|+|||.+|++|+|+++|++||+||+ +|+.+++|++.|.+||||+||||||+|+||||++ .|+ ||||+
T Consensus 2 ml~Pk~tk~rk~~~g~~~~~~~~~~G~~-----~~fg~~gL~a~e~~~It~~qiEAARia~~R~lkr-~g~----~wIRv 71 (146)
T COG0197 2 MLQPKRTKYRKQHKGRGPGITIAKGGNK-----VFFGEYGLVALEPGQITARQIEAARIAANRYLKR-GGG----LWIRV 71 (146)
T ss_pred CcCCCcceeecccCCCCCCceeccCCcc-----ccceEEEEEEcccceecHHHHHHHHHHHHHHhhh-cCC----EEEEE
Confidence 5678999999999999999999999986 6999999999999999999999999999999986 553 99999
Q ss_pred cCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEE--ec
Q 027696 92 HPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV--SR 169 (220)
Q Consensus 92 ~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~--~~ 169 (220)
|||||||+|| ||||||+|| |+|+||||||+|||+||||++++ ++.|+||||+|++|||++|++++ ++
T Consensus 72 fP~~~~~~kp-----~e~Rmg~Gk----G~pegwaArVkpG~vlfei~g~~--e~~A~EAlr~Aa~KLP~~~~~v~~~~~ 140 (146)
T COG0197 72 FPDKPLTEKP-----GEDRMGKGK----GKPEGWAARVKPGRVLFEIAGVP--EELAREALRRAAAKLPVKTKFVIRIEK 140 (146)
T ss_pred cCCceeeeCC-----CcccccCCC----CCccEEEEEecCCcEEEEEecCc--HHHHHHHHHHHhhcCCCceEEEEEEec
Confidence 9999999999 899999999 99999999999999999999985 45599999999999999965554 44
Q ss_pred ccCcc
Q 027696 170 KWGFT 174 (220)
Q Consensus 170 ~~Gft 174 (220)
+.++
T Consensus 141 -~~~~ 144 (146)
T COG0197 141 -REGT 144 (146)
T ss_pred -chhc
Confidence 5443
No 6
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=100.00 E-value=6.3e-35 Score=229.64 Aligned_cols=109 Identities=42% Similarity=0.498 Sum_probs=102.9
Q ss_pred CCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcc
Q 027696 44 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123 (220)
Q Consensus 44 ~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~ 123 (220)
..++.+++|+++|++|||++||||||+++||||.+. +|++|||+||||++|+|| +++|||+|||+|+
T Consensus 4 ~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~----~~~~~ir~~p~~~vt~k~---------~~~rMGkGKG~~~ 70 (112)
T cd01433 4 KLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKK----GGKLWIRVFPDHPVTKKP---------LETRMGKGKGKPE 70 (112)
T ss_pred eeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhc----CceEEEEecCCccEEECc---------cccccCCCCCCcc
Confidence 468899999999999999999999999999999874 579999999999999999 7999999999999
Q ss_pred eEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEE
Q 027696 124 GTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKII 166 (220)
Q Consensus 124 g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv 166 (220)
+|||+|++||+|||+.+..+ .+.|++||++|++|||++|+|+
T Consensus 71 ~~~a~v~~G~iifEi~~~~~-~~~~~~alk~a~~Klp~~~k~i 112 (112)
T cd01433 71 GWVARVKPGQILFEVRGVPE-EEVAKEALRRAAKKLPIKTKIV 112 (112)
T ss_pred EEEEEECCCCEEEEEeCcCc-HHHHHHHHHHhhccCCCcEEEC
Confidence 99999999999999998754 9999999999999999999974
No 7
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=100.00 E-value=4.8e-35 Score=237.29 Aligned_cols=132 Identities=37% Similarity=0.582 Sum_probs=116.3
Q ss_pred cccc-ccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCc
Q 027696 5 PARC-YRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD 83 (220)
Q Consensus 5 Parc-Yr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~ 83 (220)
|.+| ||. ..+ |+|.+|+.++|..++. | |+ ++|+++|.++||++||||||+++||+|.+ .|
T Consensus 1 Pk~~kyrk-~~k-~~r~~~~~~~~~~~l~-~--g~-----------~gl~a~~~g~l~~~qlEa~R~~i~r~lkk-~~-- 61 (133)
T PF00252_consen 1 PKRTKYRK-YQK-YPRINYGKSKPGNKLK-F--GD-----------YGLKALEPGRLTSNQLEAARIAINRYLKK-NG-- 61 (133)
T ss_dssp TSCCSTSS-SSS--SSTTTSTTSSCSSSS-S--SS-----------EEEEESS-EEEEHHHHHHHHHHHHHHHHH-TS--
T ss_pred CCCCccCC-CCC-CCCCCcccccCccEEE-e--ee-----------eeEEEeeeeeechhhhHHHHHHHHHHhhh-he--
Confidence 7899 988 445 9999999999988877 4 21 89999999999999999999999999976 44
Q ss_pred ceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCce
Q 027696 84 AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQ 163 (220)
Q Consensus 84 ~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~ 163 (220)
++|||+|||+++|+++| +++|++++|+|++|||+|++||+|||+.++ .+.+.|++||++|++|||+++
T Consensus 62 --~~~i~v~p~~~vTkk~~---------~~RMG~GKG~~~~~~a~V~~G~iifEi~~~-v~~~~a~~alk~a~~KLP~~~ 129 (133)
T PF00252_consen 62 --KLWIRVFPHHPVTKKPL---------ETRMGKGKGKIDHWVARVKPGQIIFEIGGK-VNEEEAKEALKRAAKKLPIKT 129 (133)
T ss_dssp --TEEESSSCEEEEEE-SS---------SSSSSSSSCEEEEEEEEESTTEEEEEEESG-SCHHHHHHHHHHHHHTSSSCE
T ss_pred --eEEEEeeeeeeeeeehh---------hhhhccCCCCccEEEEEECCCcEEEEECCc-CCHHHHHHHHHHHHhhCCCCE
Confidence 59999999999999994 889999999999999999999999999762 499999999999999999999
Q ss_pred EEEE
Q 027696 164 KIIV 167 (220)
Q Consensus 164 kIv~ 167 (220)
+|+.
T Consensus 130 ~~v~ 133 (133)
T PF00252_consen 130 KFVS 133 (133)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 9973
No 8
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=100.00 E-value=3.8e-33 Score=228.34 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=97.8
Q ss_pred EEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEE
Q 027696 49 CVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCAR 128 (220)
Q Consensus 49 ~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vAr 128 (220)
...|+++|.+|||++||||||+++||+|.+ .| ++|||+||||+||+++ ++++|++|||+|++||||
T Consensus 31 ~~gL~a~e~g~i~~~qlEaaR~~i~r~Lkk-~g----~~~irv~P~~~vt~k~---------~~~RMGkGKG~~~~~var 96 (138)
T PRK09203 31 EFGLKALEPGWITARQIEAARIAMTRHIKR-GG----KVWIRIFPDKPVTKKP---------AEVRMGKGKGSPEYWVAV 96 (138)
T ss_pred cEEEEECcCCeEcHHHHHHHHHHHHHHhhc-Cc----eEEEEeCCCccEEcCh---------hhccccCCCCCCcEEEEE
Confidence 469999999999999999999999999964 55 6999999999999988 588999999999999999
Q ss_pred eeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe
Q 027696 129 VAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 168 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~ 168 (220)
|++||+||||++ .+.++|+|||++|++|||++|+|+..
T Consensus 97 Vk~G~iifEi~~--~~~~~a~~al~~a~~KLP~~~kii~~ 134 (138)
T PRK09203 97 VKPGRILFEIAG--VSEELAREALRLAAAKLPIKTKFVKR 134 (138)
T ss_pred ECCCCEEEEEeC--CCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 999999999998 69999999999999999999999975
No 9
>CHL00044 rpl16 ribosomal protein L16
Probab=99.98 E-value=2.5e-32 Score=223.06 Aligned_cols=105 Identities=24% Similarity=0.319 Sum_probs=96.1
Q ss_pred eEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEE
Q 027696 48 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127 (220)
Q Consensus 48 ~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vA 127 (220)
-+..|+++|.+|||++||||||+++||+|.+ +|++|||+|||+++|+|| .+++|+++||+|++|||
T Consensus 30 G~~GL~a~e~~~i~~~qiEaaR~~i~r~lkk-----~~~i~irv~P~~pvtkkp---------~e~RMGkGKG~~~~~va 95 (135)
T CHL00044 30 GRYALQALEPAWITSRQIEAGRRAITRYARR-----GGKIWIRIFPDKPVTMRP---------AETRMGSGKGSPEYWVA 95 (135)
T ss_pred ccEEEEEccCcEECHHHHHHHHHHHHHhhhc-----CcEEEEEECCCcceEeCc---------ccccccCCCCCccEEEE
Confidence 4578999999999999999999999999965 678999999999999988 35666666999999999
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 168 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~ 168 (220)
+|++|||||||.+. +.++|++||++|++|||++|+|+..
T Consensus 96 ~V~~G~ilfEi~g~--~~~~ak~al~~a~~KLP~k~~~v~~ 134 (135)
T CHL00044 96 VVKPGRILYEMGGV--SETIARAAIKIAAYKMPIKTQFIIS 134 (135)
T ss_pred EECCCcEEEEEeCC--CHHHHHHHHHHHhhcCCCcEEEEec
Confidence 99999999999985 6689999999999999999999864
No 10
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=99.98 E-value=1.9e-32 Score=221.29 Aligned_cols=98 Identities=27% Similarity=0.307 Sum_probs=92.3
Q ss_pred eEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEE
Q 027696 48 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127 (220)
Q Consensus 48 ~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vA 127 (220)
-+..|+++|.+|||++||||||+++||+|.+ +|++|||+|||++||++++ +++|++|||+|++|||
T Consensus 29 G~~gL~a~e~~~i~~~qlEaaR~~i~r~l~~-----~~~~~irv~P~~~vt~k~~---------~~RMGkGKG~~~~~va 94 (126)
T TIGR01164 29 GEYGLQALEPGWITARQIEAARVAMTRYVKR-----GGKLWIRIFPDKPYTKKPL---------ETRMGKGKGNPEYWVA 94 (126)
T ss_pred ccEeeEECcCCeEcHHHHHHHHHHHHHHHhh-----CceEEEEECCCcCEEeCch---------hccccCCCCCCCEEEE
Confidence 3568999999999999999999999999974 7899999999999999994 8899999999999999
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCC
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPG 161 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~ 161 (220)
+|++||+||||.+ .++++|++||++|++|||+
T Consensus 95 rV~~G~ilfEi~~--~~~~~a~~al~~a~~KLP~ 126 (126)
T TIGR01164 95 VVKPGKILFEIAG--VPEEVAREAFRLAASKLPI 126 (126)
T ss_pred EECCCCEEEEEeC--CCHHHHHHHHHHHHhcCCC
Confidence 9999999999998 6999999999999999995
No 11
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.7e-19 Score=153.90 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=97.9
Q ss_pred EEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEE
Q 027696 49 CVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCAR 128 (220)
Q Consensus 49 ~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vAr 128 (220)
...|.+.+.+.|+|.++|+.|..+++++.- ..+|++|.|++|+.+++.+. . +++|++++|.|++||||
T Consensus 70 ~Ygl~a~~~g~l~~~~~e~~r~~~~r~~~~---~~~~~iWrr~~p~~Pvt~K~------~---etRMG~GKGa~d~wva~ 137 (221)
T KOG3422|consen 70 RYGLRAKSGGILDSAQFEAMRLTRARKMNP---RNNGKIWRRPAPNLPVTVKG------N---ETRMGGGKGAIDHWVAR 137 (221)
T ss_pred hhhheeccCceeeHHHHHHHHHHHHHhcCc---ccCccEEEEecCCCceeecC------c---ceeccCCCCCcceeEEE
Confidence 347899999999999999999888888742 34789999999999998765 3 99999999999999999
Q ss_pred eeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEec
Q 027696 129 VAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
|++|+|||||.++ ..++.|++||..|++|||+++++|++.
T Consensus 138 V~~GrIl~EmgG~-~~~~~Ar~al~~aa~klp~~~efVs~~ 177 (221)
T KOG3422|consen 138 VKAGRILFEMGGD-VEEEEARQALLQAAHKLPFKYEFVSEE 177 (221)
T ss_pred ecCCcEEEEeCCc-ccHHHHHHHHHHHHhcCCccEEEeeHh
Confidence 9999999999996 799999999999999999999999874
No 12
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=76.82 E-value=5.5 Score=29.58 Aligned_cols=28 Identities=36% Similarity=0.395 Sum_probs=22.5
Q ss_pred EeeCCCEEEEEEecCCC-HHHHHHHHHHc
Q 027696 128 RVAIGQVLLSVRCKDSN-SLHAQEALRRA 155 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~-~~~a~eALrrA 155 (220)
+|+.||+|++|..+.+. .+.|.+.|+.|
T Consensus 43 ~V~~Gd~l~~i~~~~~~~~~~a~~~~~~a 71 (75)
T PF07831_consen 43 RVEKGDPLATIYANDEARLEEAVERLRAA 71 (75)
T ss_dssp EEBTTSEEEEEEESSSSHHHHHHHHHHHH
T ss_pred EECCCCeEEEEEcCChHHHHHHHHHHHhC
Confidence 78999999999998776 66676666654
No 13
>PRK10380 hypothetical protein; Provisional
Probab=53.06 E-value=13 Score=27.40 Aligned_cols=38 Identities=24% Similarity=0.537 Sum_probs=30.8
Q ss_pred CCCCCCCCCCc----CCCCCCceeEEecCCCCCCCCCCCeEEEEeecc
Q 027696 13 KNKPYPKSRFC----RGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWE 56 (220)
Q Consensus 13 ~~~pY~r~~y~----~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E 56 (220)
..|||||.-+| +|.|+..|+-|.+- | |+|--=+|+|+-
T Consensus 3 ~rPpYPReA~iV~vekG~~g~~vtwyelR---a---Dhp~P~sliSEH 44 (63)
T PRK10380 3 TKPPYPREAYIVTIEKGKPGQTVTWYQLR---A---DHPKPDSLISEH 44 (63)
T ss_pred CCCCCCcceEEEEeecCCCCceEEEEEee---c---CCCCCCcccccC
Confidence 35899998887 89999999999884 4 677777777764
No 14
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=46.53 E-value=23 Score=35.63 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHHHcccCCCCceEEEEecccCccccChHHHHhhhhcCeeeccCceEE
Q 027696 146 LHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAK 198 (220)
Q Consensus 146 ~~a~eALrrA~~KlP~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk 198 (220)
..++|||+.|+..+-.+..|.--....++.-+.++++.+ .+|-|||-|-|.+
T Consensus 305 ~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~-~dgIlVPGGFG~R 356 (533)
T COG0504 305 KSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKL-VDGILVPGGFGYR 356 (533)
T ss_pred HHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhc-CCEEEeCCCCCcC
Confidence 457899999999999999999989999998887888776 8999999998754
No 15
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=43.66 E-value=27 Score=23.56 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.4
Q ss_pred EeeCCCEEEEEEec
Q 027696 128 RVAIGQVLLSVRCK 141 (220)
Q Consensus 128 rV~~GqvIf~i~~~ 141 (220)
.|+.||+|+++...
T Consensus 23 ~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 23 QVKKGDVLLVLDSP 36 (50)
T ss_pred EEcCCCEEEEECcH
Confidence 79999999999853
No 16
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=43.58 E-value=36 Score=23.54 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCcceEEEEeeCCCEEEEEEecCC---CHHHHHHHHHHc
Q 027696 120 GKPQGTCARVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (220)
Q Consensus 120 Gkp~g~vArV~~GqvIf~i~~~~~---~~~~a~eALrrA 155 (220)
|.|... |.+++|++|.+|.+.+. +.+.+.++|+.+
T Consensus 36 ~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~ 73 (82)
T cd00992 36 GGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNS 73 (82)
T ss_pred CChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhC
Confidence 344333 57899999999987754 566777777653
No 17
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=33.00 E-value=1e+02 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.2
Q ss_pred eEEEEeeCCCEEEEEEecCCCHHHHHHHHHHc
Q 027696 124 GTCARVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (220)
Q Consensus 124 g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA 155 (220)
+.+-++.+|+.++-|-+-..|...|.+|++.+
T Consensus 78 HR~G~l~vGe~~v~V~vsa~hR~eaf~A~~~~ 109 (117)
T PF02391_consen 78 HRVGRLKVGEPIVLVAVSAPHRKEAFEACEYI 109 (117)
T ss_dssp EEEEEEETTSEEEEEEEEESSHHHHHHHHHHH
T ss_pred EeeCCCCCCCeEEEEEEecCCHHHHHHHHHHH
Confidence 34458999999999999999999999998754
No 18
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.91 E-value=51 Score=31.12 Aligned_cols=47 Identities=30% Similarity=0.563 Sum_probs=38.1
Q ss_pred CCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeeccc
Q 027696 46 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKM 102 (220)
Q Consensus 46 fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkm 102 (220)
--+|.||+.-=++.=+.+-||+|++.++-=+ -| |.+||-|++.-.+|
T Consensus 182 Ikvc~HiI~GLPgE~~~~mleTak~v~~~~v---~G-------IKlH~LhvvkgT~m 228 (312)
T COG1242 182 IKVCTHLINGLPGETRDEMLETAKIVAELGV---DG-------IKLHPLHVVKGTPM 228 (312)
T ss_pred CeEEEEEeeCCCCCCHHHHHHHHHHHHhcCC---ce-------EEEEEEEEecCChH
Confidence 4589999999999999999999997655433 23 88899999987665
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=30.28 E-value=1.5e+02 Score=24.02 Aligned_cols=45 Identities=27% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCceeEEecCCCCCCCCCC---CeEEEEeeccccccChhHHHHHHHHH
Q 027696 28 DPKIRIYDVGMKKKGVDEF---PFCVHLVSWEKENVSSEALEAARIAC 72 (220)
Q Consensus 28 ~~KI~~fd~G~~~a~~~~f---p~~~~Lvs~E~~qiss~aLEAARiaa 72 (220)
-|.|.++|.=-+...+.+- ...+.-+.+.++.||.+++||-+-|+
T Consensus 11 ~P~laIvD~kTkR~~~~~~~~~~~~~i~v~NPpG~It~el~~ai~~a~ 58 (121)
T PF04019_consen 11 IPDLAIVDGKTKREPVVEEVRKFYRVIEVKNPPGTITEELIEAIKKAL 58 (121)
T ss_pred CCCEEEEeCcccccCCcccccCCceEEEEECCCCcccHHHHHHHHHHH
Confidence 3668888875444333222 24677889999999999999999885
No 20
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=27.85 E-value=61 Score=22.68 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=34.7
Q ss_pred eEEEEeeC--CCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEecccCccccChHHHH
Q 027696 124 GTCARVAI--GQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYL 182 (220)
Q Consensus 124 g~vArV~~--GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~Gft~~~~~e~~ 182 (220)
-|.|+|.. +..-..+.+ -...|.|..|...|..++=+ ....+||..++|+
T Consensus 12 kw~A~I~~~~~~k~~~lG~-f~t~eeAa~Ayd~a~~~~~g--------~~a~~Nf~~~~y~ 63 (64)
T smart00380 12 KWVAEIRDPSKGKRVWLGT-FDTAEEAARAYDRAAFKFRG--------RSARLNFPNSLYD 63 (64)
T ss_pred eEEEEEEecCCCcEEecCC-CCCHHHHHHHHHHHHHHhcC--------CccccCCCCccCC
Confidence 38998886 554444443 45788999999999888744 3345677777664
No 21
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=27.30 E-value=1.5e+02 Score=29.17 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=34.3
Q ss_pred EEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe-----cccCccccChHHHHhhhhc
Q 027696 134 VLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS-----RKWGFTKFSRSDYLRFKSE 187 (220)
Q Consensus 134 vIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~-----~~~Gft~~~~~e~~~~~~~ 187 (220)
-|+||+. .|......||++|+-+= .+.-|.-+ ...|+|.++..+|.+.+.+
T Consensus 15 Gi~SVCs--ahp~VieAAl~~a~~~~-~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~ 70 (421)
T PRK15052 15 GICSVCS--AHPLVIEAALAFDLNST-RKVLIEATSNQVNQFGGYTGMTPADFREFVYG 70 (421)
T ss_pred ceeeECC--CCHHHHHHHHHHHhhcC-CcEEEEeccccccccCCcCCCCHHHHHHHHHH
Confidence 3788885 35544444599987631 22233333 4569999999999999887
No 22
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=27.11 E-value=1.5e+02 Score=29.18 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=34.0
Q ss_pred EEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe-----cccCccccChHHHHhhhhc
Q 027696 134 VLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS-----RKWGFTKFSRSDYLRFKSE 187 (220)
Q Consensus 134 vIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~-----~~~Gft~~~~~e~~~~~~~ 187 (220)
-|+||+. .|......||++|+-+= .+.-|.-+ ...|+|.++..+|.+.+.+
T Consensus 18 gI~sVCs--ahp~VieAAl~~a~~~~-~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~ 73 (426)
T PRK15458 18 GIYAVCS--AHPLVLEAAIRYALAND-SPLLIEATSNQVDQFGGYTGMTPADFRGFVCQ 73 (426)
T ss_pred eEEEecC--CCHHHHHHHHHHHhhcC-CcEEEEeccccccccCCcCCCCHHHHHHHHHH
Confidence 4788885 35544444499987631 22233332 4569999999999999887
No 23
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=25.62 E-value=1.9e+02 Score=24.85 Aligned_cols=106 Identities=19% Similarity=0.143 Sum_probs=53.5
Q ss_pred hCCcceeEEEEecCCceeeecccccccccchhhcc---ccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHc-
Q 027696 80 AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTG---MRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA- 155 (220)
Q Consensus 80 ~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~G---Mr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA- 155 (220)
+|+.+|++.||+||+=.-.. .++=|+.- |.+.+...-.| .|+ .|+-|++--...+..++.+.++-.
T Consensus 70 vg~~GY~w~i~~ypnG~g~~-------~~~~iSvyl~L~~ge~D~~L~W--P~~-~~~tfsLlDQ~~~~~~~~~~~~p~p 139 (186)
T cd03777 70 TGYFGYKMCARVYLNGDGMG-------KGTHLSLFFVIMRGEYDALLPW--PFK-QKVTLMLMDQGSSRRHLGDAFKPDP 139 (186)
T ss_pred eCCCCeeEEEEEEcCCCCCC-------CCCEEEEEEEEecCCcccccCC--cee-EEEEEEEEcCCCccccccceeccCC
Confidence 46668999999999842211 01111111 33444433344 233 667777763322334444444311
Q ss_pred ---ccCCCCceEEEEecccCccccChHHHHhhhhcCeeeccCceEEEe
Q 027696 156 ---KFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLL 200 (220)
Q Consensus 156 ---~~KlP~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~ 200 (220)
.|.-|.. .....|||.+|-.. ++|...+.|..|--.+++.
T Consensus 140 ~~~~F~rp~~---~~n~~~G~~~Fi~~--~~Le~~~ylkdD~l~Irv~ 182 (186)
T cd03777 140 NSSSFKKPTG---EMNIASGCPVFVAQ--TVLENGTYIKDDTIFIKVI 182 (186)
T ss_pred ccccccCCcc---CCCCCCCchheeEH--HHhccCCcEeCCEEEEEEE
Confidence 1111321 11346899887422 2455677887776666553
No 24
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=24.62 E-value=1.3e+02 Score=24.27 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=29.1
Q ss_pred EEeeCCCEEEEEEecCCCHHHHHHHHHHc----ccCCCC
Q 027696 127 ARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG 161 (220)
Q Consensus 127 ArV~~GqvIf~i~~~~~~~~~a~eALrrA----~~KlP~ 161 (220)
-++++|+.++-|-+-..+...|.+|++.+ |...|+
T Consensus 73 G~l~vGe~~v~i~v~a~hR~~af~A~~~~id~lK~~~Pi 111 (124)
T cd00756 73 GRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLKHRAPI 111 (124)
T ss_pred cccCCCCEEEEEEEecCCHHHHHHHHHHHHHHHHhhCCE
Confidence 36899999999999999999998887754 666676
No 25
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.34 E-value=1.3e+02 Score=20.37 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCEEEEEEecCCCHHHHHHHHHHcccCC
Q 027696 132 GQVLLSVRCKDSNSLHAQEALRRAKFKF 159 (220)
Q Consensus 132 GqvIf~i~~~~~~~~~a~eALrrA~~Kl 159 (220)
|..++.+++...+.+.++++|+.+.+++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v 68 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEV 68 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCee
Confidence 4444555554456779999999988765
No 26
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.93 E-value=86 Score=22.94 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCEEEEEEecC--CCHHHHHHHHHHcccCC
Q 027696 131 IGQVLLSVRCKD--SNSLHAQEALRRAKFKF 159 (220)
Q Consensus 131 ~GqvIf~i~~~~--~~~~~a~eALrrA~~Kl 159 (220)
.+++++.+.+.+ ++.+.++++|+.+.+++
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEV 69 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence 466788788765 66889999999888753
No 27
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=23.70 E-value=86 Score=25.30 Aligned_cols=74 Identities=20% Similarity=0.168 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhhhhhhhCCcceeEEEE-ecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEe
Q 027696 62 SEALEAARIACNKYMAKFAGKDAFHLRVR-VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRC 140 (220)
Q Consensus 62 s~aLEAARiaanKyl~K~~Gk~~f~l~Ir-v~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~ 140 (220)
.-+--|||.++.-||. +.+++.--|-+| ++|.--+ | -|.=-+.+++|.|+.++-
T Consensus 13 ~G~YYAaRLaVlE~L~-~~~RQA~viv~REI~p~Y~~---P----lGvW~VRE~vR~A~~~~p----------------- 67 (110)
T PF04895_consen 13 GGAYYAARLAVLEYLR-RRRRQAGVIVLREITPEYYA---P----LGVWQVRENVRKAMKGKP----------------- 67 (110)
T ss_pred chHHHHHHHHHHHHHH-HcCccceEEEEEEecCCcee---e----eeeehHHHHHHHHHhCCC-----------------
Confidence 4577899999999996 477766566555 6777633 1 233345667777775542
Q ss_pred cCCCHHHHHHHHHHcccCCCCc
Q 027696 141 KDSNSLHAQEALRRAKFKFPGR 162 (220)
Q Consensus 141 ~~~~~~~a~eALrrA~~KlP~~ 162 (220)
...+...|||..++.+|..+
T Consensus 68 --~~f~~l~eAl~~~~~~l~~~ 87 (110)
T PF04895_consen 68 --EKFETLEEALEYVSSRLKLP 87 (110)
T ss_pred --cccCCHHHHHHHHHHHhCCC
Confidence 23345677888888777665
No 28
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=23.30 E-value=2.1e+02 Score=28.24 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=34.1
Q ss_pred EEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe-----cccCccccChHHHHhhhhc
Q 027696 134 VLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS-----RKWGFTKFSRSDYLRFKSE 187 (220)
Q Consensus 134 vIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~-----~~~Gft~~~~~e~~~~~~~ 187 (220)
-|+||+. .|.....-||++|+-+= .+.-|.-+ ...|+|.++..+|.+.+.+
T Consensus 14 gI~sVCs--ahp~VieAAl~~a~~~~-~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~ 69 (420)
T TIGR02810 14 GIYSVCS--AHPLVLEAAIRRARASG-TPVLIEATSNQVNQFGGYTGMTPADFRDFVET 69 (420)
T ss_pred eEEEECC--CCHHHHHHHHHHHhhcC-CcEEEEeccccccccCCcCCCCHHHHHHHHHH
Confidence 4788884 35544444599987631 22233333 4569999999999999887
No 29
>PRK06770 hypothetical protein; Provisional
Probab=22.41 E-value=36 Score=29.82 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHcccCCCCceEEEEecccCccccChHHHHhhhhc
Q 027696 144 NSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSE 187 (220)
Q Consensus 144 ~~~~a~eALrrA~~KlP~~~kIv~~~~~Gft~~~~~e~~~~~~~ 187 (220)
+++.+..|++.-. +||+.-.++|||+..+.+.-+.++..
T Consensus 68 tE~~ii~~MH~Mt-----HQKV~A~~KwG~~~mT~enI~~l~~~ 106 (180)
T PRK06770 68 TEEEIITAMHKMT-----HQKVKADEKWGFIEMTQENIEKLKDI 106 (180)
T ss_pred CHHHHHHHHHHHH-----hhhhhhhcccceEecCHHHHHHHHHH
Confidence 5677777887754 58999999999999999998888543
No 30
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.91 E-value=97 Score=27.15 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=38.8
Q ss_pred EEecCCceee-ecccccccccc----hhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccC
Q 027696 89 VRVHPFHVLR-INKMLSCAGAD----RLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFK 158 (220)
Q Consensus 89 Irv~P~hvir-~nkmls~AgAD----Rlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~K 158 (220)
=.-+|--.|+ .+--||+-+=| -+=.+-=.|+| ++|+|++-|+|.. |-+.+.+|++.|+.|
T Consensus 71 R~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g---------~~GDvLigISTSG-NS~nVl~Ai~~Ak~~ 135 (176)
T COG0279 71 RPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG---------QPGDVLIGISTSG-NSKNVLKAIEAAKEK 135 (176)
T ss_pred CCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC---------CCCCEEEEEeCCC-CCHHHHHHHHHHHHc
Confidence 3456766666 33344554443 22222223344 5699999999965 888999999999875
No 31
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.66 E-value=1.2e+02 Score=20.98 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.3
Q ss_pred eCCCEEEEEEecC-CCHHHHHHHHHHcccCC
Q 027696 130 AIGQVLLSVRCKD-SNSLHAQEALRRAKFKF 159 (220)
Q Consensus 130 ~~GqvIf~i~~~~-~~~~~a~eALrrA~~Kl 159 (220)
+.+++.+++.+.. .+.+..+++|+.+.+++
T Consensus 36 ~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 36 DEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4566777777765 67888889999888753
Done!