Query 027696
Match_columns 220
No_of_seqs 201 out of 770
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 23:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 1E-105 5E-110 694.2 21.1 210 1-210 1-210 (215)
2 3j0l_J Ribosomal protein L10; 100.0 2E-103 5E-108 682.8 9.7 208 3-210 1-208 (219)
3 3iz5_I 60S ribosomal protein L 100.0 4E-106 1E-110 700.6 -17.3 218 1-218 1-218 (224)
4 2zkr_h 60S ribosomal protein L 100.0 7E-100 2E-104 658.3 17.0 211 1-211 1-211 (214)
5 3j21_N 50S ribosomal protein L 100.0 1.2E-84 4.2E-89 551.2 14.7 168 1-171 1-170 (181)
6 1vq8_H 50S ribosomal protein L 100.0 3.6E-82 1.2E-86 532.6 17.7 167 4-170 1-168 (171)
7 1ffk_F Ribosomal protein L10E; 100.0 4E-73 1.4E-77 472.4 17.8 155 4-171 1-155 (157)
8 2pa2_A 60S ribosomal protein L 100.0 4.9E-71 1.7E-75 457.3 12.9 150 33-182 2-151 (151)
9 3r8s_M 50S ribosomal protein L 100.0 2.6E-38 8.8E-43 257.7 11.2 106 48-169 29-134 (136)
10 2ftc_I Mitochondrial ribosomal 100.0 3.9E-38 1.3E-42 251.0 10.5 104 48-164 15-118 (118)
11 3bbo_O Ribosomal protein L16; 100.0 1.3E-37 4.4E-42 253.2 4.6 107 45-168 28-134 (135)
12 2zjr_J 50S ribosomal protein L 100.0 3.3E-37 1.1E-41 252.7 2.6 108 45-169 29-136 (142)
13 2kvt_A Uncharacterized protein 49.9 5 0.00017 29.0 0.8 48 13-68 3-54 (71)
14 1cz6_A Protein (androctonin); 39.5 11 0.00036 22.2 1.0 16 3-18 11-26 (26)
15 3cbz_A Dishevelled-2; PDZ doma 36.5 16 0.00054 26.5 1.8 42 128-170 51-95 (108)
16 1wi4_A Synip, syntaxin binding 36.5 21 0.00073 26.0 2.6 44 126-169 57-103 (109)
17 2vsp_A PDZ domain-containing p 35.0 37 0.0013 23.3 3.5 38 129-170 45-85 (91)
18 2pa1_A PDZ and LIM domain prot 32.2 42 0.0014 22.8 3.4 38 129-170 44-84 (87)
19 2iwq_A Multiple PDZ domain pro 31.0 22 0.00074 26.6 1.8 37 129-169 78-117 (123)
20 2gzv_A PRKCA-binding protein; 30.3 29 0.00099 25.5 2.4 42 128-173 68-112 (114)
21 2ego_A General receptor for ph 30.0 56 0.0019 22.7 3.8 36 129-168 55-93 (96)
22 2ogk_A Hypothetical protein; a 29.7 1.1E+02 0.0037 24.2 5.9 65 60-154 75-141 (146)
23 2dsj_A Pyrimidine-nucleoside ( 29.5 52 0.0018 30.7 4.4 28 128-155 379-406 (423)
24 2ejy_A 55 kDa erythrocyte memb 29.4 22 0.00074 25.9 1.5 28 128-155 54-84 (97)
25 3e17_A Tight junction protein 29.3 12 0.0004 26.2 0.0 39 128-170 39-80 (88)
26 2yt7_A Amyloid beta A4 precurs 29.0 26 0.00088 24.9 1.9 30 126-155 53-85 (101)
27 2d90_A PDZ domain containing p 29.0 94 0.0032 21.7 4.9 40 129-172 48-90 (102)
28 4e34_A Golgi-associated PDZ an 28.7 8.5 0.00029 26.4 -0.8 30 127-156 45-77 (87)
29 1vb7_A PDZ and LIM domain 2; P 28.4 57 0.0019 22.6 3.6 39 128-170 47-88 (94)
30 2cs5_A Tyrosine-protein phosph 27.4 37 0.0013 24.6 2.6 43 128-170 60-105 (119)
31 1brw_A PYNP, protein (pyrimidi 26.3 52 0.0018 30.7 3.8 28 128-155 387-414 (433)
32 2byg_A Channel associated prot 26.3 27 0.00092 25.7 1.6 38 128-169 72-112 (117)
33 2v90_A PDZ domain-containing p 26.0 79 0.0027 21.8 4.0 39 129-171 48-89 (96)
34 3nfk_A Tyrosine-protein phosph 25.6 76 0.0026 22.3 3.9 29 128-156 62-93 (107)
35 1kwa_A Hcask/LIN-2 protein; PD 25.5 15 0.0005 25.7 -0.0 45 121-169 36-83 (88)
36 2fcf_A Multiple PDZ domain pro 25.2 73 0.0025 22.2 3.7 38 129-170 58-98 (103)
37 1wif_A RSGI RUH-020, riken cDN 25.2 53 0.0018 25.0 3.2 40 128-170 67-110 (126)
38 2eg2_A Nitrogen regulatory pro 25.0 42 0.0014 24.8 2.5 44 133-176 58-102 (112)
39 2db5_A INAD-like protein; PDZ 24.9 42 0.0014 24.7 2.4 39 128-170 72-114 (128)
40 2iwo_A Multiple PDZ domain pro 24.3 29 0.00099 25.7 1.5 39 128-170 71-112 (120)
41 2o2t_A Multiple PDZ domain pro 24.3 40 0.0014 24.3 2.2 39 128-170 67-109 (117)
42 1um1_A KIAA1849 protein, RSGI 24.2 1E+02 0.0036 21.7 4.5 39 128-170 54-95 (110)
43 2dlu_A INAD-like protein; PDZ 24.0 1.1E+02 0.0036 21.7 4.5 38 128-169 56-96 (111)
44 2fne_A Multiple PDZ domain pro 24.0 38 0.0013 24.9 2.1 39 128-170 71-112 (117)
45 3pkz_A Recombinase SIN; small 23.7 1.4E+02 0.0049 21.9 5.3 44 139-187 9-52 (124)
46 2e7k_A Maguk P55 subfamily mem 22.9 34 0.0012 23.9 1.5 28 128-155 47-76 (91)
47 3h5q_A PYNP, pyrimidine-nucleo 22.9 69 0.0023 30.0 4.0 28 128-155 390-417 (436)
48 2euc_A Hypothetical protein YF 22.8 29 0.001 27.5 1.3 31 59-89 83-113 (130)
49 2kv8_A RGS12, regulator of G-p 22.0 84 0.0029 21.0 3.4 39 129-171 41-82 (83)
50 1whd_A RGS3, regulator of G-pr 21.8 1.1E+02 0.0038 21.4 4.2 38 129-170 54-94 (100)
51 3rpf_A Molybdopterin synthase 20.9 1.4E+02 0.0047 23.9 4.9 39 123-161 79-121 (148)
52 2he4_A Na(+)/H(+) exchange reg 20.8 84 0.0029 21.3 3.2 37 129-169 46-85 (90)
53 2vh7_A Acylphosphatase-1; hydr 20.6 1.3E+02 0.0046 21.8 4.5 41 122-165 36-76 (99)
54 2q5w_E Molybdopterin-convertin 20.3 1.1E+02 0.0038 24.4 4.2 38 124-161 81-122 (149)
55 2wp4_A Molybdopterin-convertin 20.3 1.1E+02 0.0038 24.3 4.2 40 122-161 87-130 (147)
56 1fm0_E Molybdopterin convertin 20.2 1.1E+02 0.0038 24.4 4.2 39 123-161 82-124 (150)
57 3egg_C Spinophilin; PP1, serin 20.1 46 0.0016 26.6 1.9 38 128-169 129-169 (170)
58 2ns1_B Nitrogen regulatory pro 20.0 84 0.0029 23.4 3.3 43 133-175 62-105 (116)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=100.00 E-value=1.3e-105 Score=694.23 Aligned_cols=210 Identities=65% Similarity=1.082 Sum_probs=196.6
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
||||||||||||+|||||||+||+||||+||++|||||++|+|+|||+|+||+|+|++||||+||||||||+||||++++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~kka~~~~fp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~ 80 (215)
T 4a17_H 1 MGRRPARCYRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFI 80 (215)
T ss_dssp -CCCCGGGTSSCCSCCCCSCTTCCSCCCCSCCCCEEECTTCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcHHhhccccCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCCeeEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|+|+||||||+|||||||+|||||||||||||+|||+|||+|+||||||++|||||||+++++|+++|+|||++|++|||
T Consensus 81 GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP 160 (215)
T 4a17_H 81 SKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFP 160 (215)
T ss_dssp CGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSS
T ss_pred CCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecccCccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCC
Q 027696 161 GRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQ 210 (220)
Q Consensus 161 ~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~~~~gpl~~~~ 210 (220)
++|+|+++++||||+|++|||++|++||+|++|||+||||++||||++|+
T Consensus 161 ~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~~gpl~~~~ 210 (215)
T 4a17_H 161 GRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNVKVIGERGPLSRLE 210 (215)
T ss_dssp SCEEEEEESBCTTSSSBHHHHHHHHHTTCEEEETTEEEECCTTSCTTTSG
T ss_pred CceEEEEccccCCCccCHHHHHHHHHCCeEecCCccEEEccCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999995
No 2
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=100.00 E-value=1.5e-103 Score=682.84 Aligned_cols=208 Identities=66% Similarity=1.086 Sum_probs=195.2
Q ss_pred CCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCC
Q 027696 3 RRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGK 82 (220)
Q Consensus 3 ~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk 82 (220)
||||||||||+|||||||+||+||||+||++|||||++|+|+|||+|+||+|+|++||||+||||||||+||||++++|+
T Consensus 1 rrParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~kka~~~efp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~GK 80 (219)
T 3j0l_J 1 RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGR 80 (219)
T ss_dssp CCCSSSCSSCSSSCCCCSTTSTTCCCCSCCCSBCSSCSCCSSSSCCCEEEECCSCEEECHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCchhhccccCCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCCeeEEEEECccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCc
Q 027696 83 DAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGR 162 (220)
Q Consensus 83 ~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~ 162 (220)
|+||||||+|||||||+|||||||||||||+|||+|||+|+||||||++|||||||+++++|+++|+|||++|++|||++
T Consensus 81 ~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KLP~~ 160 (219)
T 3j0l_J 81 DAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQ 160 (219)
T ss_dssp TTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHHHSSSCC
T ss_pred ccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCC
Q 027696 163 QKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQ 210 (220)
Q Consensus 163 ~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~~~~gpl~~~~ 210 (220)
|+|+++++||||+|++|||++|+++|+|++|||+||||++||||++|.
T Consensus 161 tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~~gpl~~~~ 208 (219)
T 3j0l_J 161 QKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNI 208 (219)
T ss_dssp CCCEECCCSSSSSCSCHHHHTTTTSCCSCCCSSSCCCSCCSSSCHHHH
T ss_pred eEEEEecccCccccCHHHHHHHHHCCeEecCCccEEEccCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999995
No 3
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=100.00 E-value=4e-106 Score=700.57 Aligned_cols=218 Identities=87% Similarity=1.431 Sum_probs=183.3
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
||||||||||||+|||||||+||+||||+||++|||||++|+|+|||+|+||+|+|++||||+||||||||+||||++++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~rGvP~~KI~~fd~G~kka~~~efp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~ 80 (224)
T 3iz5_I 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNA 80 (224)
T ss_dssp --------------------------------CCCCCSCCCGGGTSSCCSCCCCCTTTSCSCCCCCCSSSSEECCSSCHH
T ss_pred CCCCcHhhhccccCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCceEEEEEECccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|||+||||||+|||||||+|||||||||||||+|||+|||+|+||||||++|||||||+++++|+++|+|||++|++|||
T Consensus 81 GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tGMr~~kGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALrrA~~KLP 160 (224)
T 3iz5_I 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFP 160 (224)
T ss_dssp HHCCCEEEEEECSCCEEEHHHHHHHHHHHHHHHHHHHCSSSCSCEEEECCCCCSEECCCCCCCCSSCSSSSSSCCCSCCC
T ss_pred CCccceEEEEeCCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecccCccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCCCCcccccC
Q 027696 161 GRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 218 (220)
Q Consensus 161 ~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~~~~gpl~~~~~~~~~~~~ 218 (220)
++|+|+++++||||+|++|||++|++||+|++|||+||||++||||++|.++.+|..+
T Consensus 161 ~ktkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~vk~~~~~gpl~~~~~~~~~~~~ 218 (224)
T 3iz5_I 161 GRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAE 218 (224)
T ss_dssp CCEEEEECCTTTEEEEEEECCSSSCSHHHHHHHHHHHTSSSCEECCCCCSSTTHHHHH
T ss_pred CceEEEEecccCccccCHHHHHHHHHcCcEecCCcceEEcCCCCChHHcCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999988754
No 4
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.1e-100 Score=658.32 Aligned_cols=211 Identities=69% Similarity=1.141 Sum_probs=165.0
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
|+||||||||+|+|||||||+||+||||+||++|||||++|+++|||+|++|+|+|++||||+||||||+|+||||++.+
T Consensus 1 M~rrParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~~gL~a~E~~~Its~qIEAARia~nR~lkr~~ 80 (214)
T 2zkr_h 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSC 80 (214)
T ss_dssp ---CCGGGTSSCCSCCCCCTTTCCCCCCCCCCSSCEECSSSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccccCCCCCChhhhcCCCCCccEEEEeCCCCcCCcccCCEEEEEEECcccccCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|+++||||||+|||||||+|||||||||||||+|||+|||+|+||||+|++|||||||+++++++++|+|||++|++|||
T Consensus 81 Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~KLP 160 (214)
T 2zkr_h 81 GKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFP 160 (214)
T ss_dssp CTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSS
T ss_pred CCcCcEEEEEECCCceeecccccccCCchhhcccccCCCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CceEEEEecccCccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCCC
Q 027696 161 GRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQP 211 (220)
Q Consensus 161 ~~~kIv~~~~~Gft~~~~~e~~~~~~~~~l~~dG~~vk~~~~~gpl~~~~~ 211 (220)
++|+|+++++||||+|++|||++++++|+|++|||+|||+++||||++|..
T Consensus 161 ~ktkiv~~~~~gft~~~~~~~~~~~~~~~~~~dg~~~~~~~~~g~l~~~~~ 211 (214)
T 2zkr_h 161 GRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPLDKWRA 211 (214)
T ss_dssp SCEEEEECC------------------------------------------
T ss_pred CcEEEEEeccCCccccCHHHHHHHHHCCeEecCCceEEEECCCCChHHhhh
Confidence 999999999999999999999999999999999999999999999999973
No 5
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-84 Score=551.19 Aligned_cols=168 Identities=39% Similarity=0.630 Sum_probs=163.8
Q ss_pred CCCCccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhh
Q 027696 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA 80 (220)
Q Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~ 80 (220)
||||||||||+++|||||||+||+||||+||++|||||+++ |||+|+||+|+|.+||||+||||||+|+||||++++
T Consensus 1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~k~a---~fp~~~~L~a~E~~qIss~qiEAARia~nRyl~r~~ 77 (181)
T 3j21_N 1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMGNPAG---DFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNV 77 (181)
T ss_dssp --CCCSSSTTCSSSCCCCCTTTSSCCCCCSCCCCEEESCTT---SCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHhhccCCCCCCchhhhcCCCCCCeEEEEecCcccC---CCCEEEEEEEcccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999999999889
Q ss_pred CCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCC
Q 027696 81 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 160 (220)
Q Consensus 81 Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP 160 (220)
|+++||||||+|||||||+|||||||||||||+|||+|||+|+||||||++||+||||+++++|+++|+|||++|++|||
T Consensus 78 Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~gwvArVk~Gqilfei~~~~~~~~~A~eAlr~A~~KlP 157 (181)
T 3j21_N 78 GRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157 (181)
T ss_dssp CTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCCCEEEECSSEEEEEEEECSTTHHHHHHHHHHHHHSSS
T ss_pred CCccceEEEEECCCceeeecccccccchhhhccccccccCCcceEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cce--EEEEeccc
Q 027696 161 GRQ--KIIVSRKW 171 (220)
Q Consensus 161 ~~~--kIv~~~~~ 171 (220)
++| +|+++++.
T Consensus 158 ~~t~~kiv~~~~~ 170 (181)
T 3j21_N 158 CKCYYRIYDKEGN 170 (181)
T ss_dssp SCCSSCEEECCCC
T ss_pred CCeeeEEEEeccH
Confidence 999 99999875
No 6
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00 E-value=3.6e-82 Score=532.64 Aligned_cols=167 Identities=36% Similarity=0.590 Sum_probs=153.6
Q ss_pred CccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCC-
Q 027696 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGK- 82 (220)
Q Consensus 4 rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk- 82 (220)
|||||||+++|||||||+||+||||+||++|||||++|+++|||+|++|+|+|++||||+||||||+|+||||++..|+
T Consensus 1 rparcYr~~~~~~Y~r~~y~~gvP~~kI~~fd~G~~~~~~~~fp~~~~L~a~E~~~Its~qIEAaRia~~R~lkk~~Gk~ 80 (171)
T 1vq8_H 1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEE 80 (171)
T ss_dssp CCGGGTSSCCSCCCCCTTTCCCCCCCCCCCSBCSCTTSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcccccccCCCCCchhhhcCCCCCCcEEEEecCCCcCCcccCCEEEEEEECcccccCHHHHHHHHHHHHHHhHHhcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCc
Q 027696 83 DAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGR 162 (220)
Q Consensus 83 ~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~ 162 (220)
++||||||+|||||||||||||||||||||+|||+|||+|+||||+|++|||||||+++++++++|+|||++|++|||++
T Consensus 81 ~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KLP~k 160 (171)
T 1vq8_H 81 GDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPS 160 (171)
T ss_dssp CSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSC
T ss_pred CCcEEEEEEcCCeeEeccccccccchhhhhccccccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred eEEEEecc
Q 027696 163 QKIIVSRK 170 (220)
Q Consensus 163 ~kIv~~~~ 170 (220)
|+|+++++
T Consensus 161 tkiv~~~~ 168 (171)
T 1vq8_H 161 CRIDSSPA 168 (171)
T ss_dssp EEEEECSC
T ss_pred EEEEEecC
Confidence 99999875
No 7
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=4e-73 Score=472.42 Aligned_cols=155 Identities=28% Similarity=0.418 Sum_probs=150.4
Q ss_pred CccccccccCCCCCCCCCCcCCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCc
Q 027696 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD 83 (220)
Q Consensus 4 rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~ 83 (220)
|||||||+++|||||||+||+||||+||++|||||++|+ +|||+|++|+|+|++||||+||||||+|+||||++.+|+|
T Consensus 1 rparcyr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~-~~fp~~~~L~a~E~~~Its~qIEAaRia~nR~lkr~~Gk~ 79 (157)
T 1ffk_F 1 KPGAHFRNSIKPAYTRREYISGIPGKGIAQFKMGNNGAG-PTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAA 79 (157)
T ss_pred CCccccccCCCCCCchhhhcCCCCCCceEEEeCCCCCcc-ccCCEEEEEEECccccCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 799999999999999999999999999999999999998 9999999999999999999999999999999999888999
Q ss_pred ceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCce
Q 027696 84 AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQ 163 (220)
Q Consensus 84 ~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~ 163 (220)
+||||||+|||||||+|| |+|||+|||+|+||||+|++|||||||+++ ++++|+|||++|++|||++|
T Consensus 80 ~fklwIRifP~~~it~kp----------etrMg~gkG~p~~wvArVk~G~ilfei~gv--~~~~A~eAlr~A~~KlP~kt 147 (157)
T 1ffk_F 80 NYKFRIRKFPFHVIREQD----------GDGMRAPFGKSVGTAARSHGANHDFIAWVN--PDPAVEFAWRRAYMKVTPTV 147 (157)
T ss_pred ccEEEEEECCCeeeEecc----------cccccCCCCCccEEEEEEcCCCEEEEEecc--CHHHHHHHHHHHHhhCCCcE
Confidence 999999999999999999 999999999999999999999999999997 56699999999999999999
Q ss_pred EEEEeccc
Q 027696 164 KIIVSRKW 171 (220)
Q Consensus 164 kIv~~~~~ 171 (220)
+|+++++.
T Consensus 148 kiv~~~~~ 155 (157)
T 1ffk_F 148 NIDSSPAG 155 (157)
T ss_pred EEEEecCC
Confidence 99998763
No 8
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=4.9e-71 Score=457.34 Aligned_cols=150 Identities=71% Similarity=1.120 Sum_probs=106.9
Q ss_pred EEecCCCCCCCCCCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhh
Q 027696 33 IYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQ 112 (220)
Q Consensus 33 ~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq 112 (220)
+|||||++|+++|||+|++|+|+|++||||+||||||+|+||||++.+|+++||||||+|||||||+|||||||||||||
T Consensus 2 ~fd~G~~~~~~~~fp~~~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq 81 (151)
T 2pa2_A 2 SFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQ 81 (151)
T ss_dssp -------CCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC------------------
T ss_pred ccccCCCcCCcccCCEEEEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhh
Confidence 79999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ccccCCCCCcceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEecccCccccChHHHH
Q 027696 113 TGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYL 182 (220)
Q Consensus 113 ~GMr~afGkp~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~Gft~~~~~e~~ 182 (220)
+|||+|||+|+||||+|+||||||||+++++++++|+|||++|++|||++|+|+++++||||+|++|||+
T Consensus 82 ~gMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~~ 151 (151)
T 2pa2_A 82 TGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 151 (151)
T ss_dssp -----------CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC------
T ss_pred cccccCCCCccEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhCC
Confidence 9999999999999999999999999999888999999999999999999999999999999999999995
No 9
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=100.00 E-value=2.6e-38 Score=257.70 Aligned_cols=106 Identities=21% Similarity=0.214 Sum_probs=100.1
Q ss_pred eEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEE
Q 027696 48 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127 (220)
Q Consensus 48 ~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vA 127 (220)
-+.+|+++|.+||||+||||||+|+||||.+ ++++|||+||||+||+|| +++|||+|||+|++|||
T Consensus 29 G~~gL~a~e~~~it~~qiEaaR~ai~R~lkr-----~gk~wirv~P~~pvt~k~---------~etRMGkGKG~~~~wva 94 (136)
T 3r8s_M 29 GSFGLKAVGRGRLTARQIEAARRAMTRAVKR-----QGKIWIRVFPDKPITEKP---------LAVRMGKGKGNVEYWVA 94 (136)
T ss_dssp SSEEEEECSCEEEEHHHHHHHHHHHHHTTCS-----CSEEEECCCCCEEEEECC---------SSCCSCSSCCEEEEEEE
T ss_pred ceEEEEECcCCeECHHHHHHHHHHHHHhhhc-----CcEEEEEECCCCceEeCc---------hhccCCCCCCCCCEEEE
Confidence 5679999999999999999999999999975 447999999999999999 59999999999999999
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEec
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
+|++|||||||.+. ++++|+|||++|++|||++|+|++.+
T Consensus 95 ~Vk~G~ilfEi~g~--~~~~A~eAlr~a~~KLP~~~kiv~~~ 134 (136)
T 3r8s_M 95 LIQPGKVLYEMDGV--PEELAREAFKLAAAKLPIKTTFVTKT 134 (136)
T ss_dssp EECTTCEEEEEESS--CHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred EECCCCEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999999999985 99999999999999999999999764
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=100.00 E-value=3.9e-38 Score=251.04 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=96.3
Q ss_pred eEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEE
Q 027696 48 FCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 127 (220)
Q Consensus 48 ~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vA 127 (220)
-+.+|+++|++||||+||||||+|+||||.+. .+||+|||+|||||||+++ ++++|++++|+|++|||
T Consensus 15 G~~gL~a~e~~~it~~qiEaaR~ai~r~l~~k---~~~~~wirv~P~~pvt~k~---------~e~RMG~GKG~~~~wva 82 (118)
T 2ftc_I 15 GNFAILALGGGYLHWGHFEMMRLTINRSMDPK---NMFAIWRVPAPFKPITRKS---------VGHRMGGGKGAIDHYVT 82 (118)
T ss_pred eeEEEEECcCCccCHHHHHHHHHHHHheeecc---CCeEEEEEECCCcccCcCc---------hhcccccCCCCccEEEE
Confidence 56799999999999999999999999999532 4689999999999997766 59999999999999999
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceE
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 164 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~k 164 (220)
+|++|||||||.++ .++++|+|||++|++|||++|+
T Consensus 83 ~Vk~G~ilfEi~g~-~~~~~a~eAlr~a~~KlP~~~~ 118 (118)
T 2ftc_I 83 PVKAGRLVVEMGGR-CEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred EECCCCEEEEEecc-CCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999994 7999999999999999999985
No 11
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=1.3e-37 Score=253.22 Aligned_cols=107 Identities=25% Similarity=0.261 Sum_probs=99.4
Q ss_pred CCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcce
Q 027696 45 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG 124 (220)
Q Consensus 45 ~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g 124 (220)
.| -+++|+++|.+||||+||||||+|+||||. ++||+|||+|||||||+++ ++++|++++|+|++
T Consensus 28 ~f-G~~gL~a~e~~~it~~qiEaaR~ai~R~lk-----~~~k~wirv~P~~pvt~k~---------~e~RMG~GKG~~~~ 92 (135)
T 3bbo_O 28 CF-GRYALQALEPAWITSRQIEAGRRAMTRNAR-----RGGKIWVRIFPDKPVTVRP---------AETRMGSGKGSPEY 92 (135)
T ss_dssp CS-SSEEEEESSCCCCCHHHHHHHHHHHHHTTC-----SSSCCCCCCCCCSCCCCCC---------SSCCSSCCCSCSSC
T ss_pred ee-ceEEEEECcCCccCHHHHHHHHHHHHHHhh-----hCcEEEEEeCCCcccEecc---------ccccccccCCCceE
Confidence 35 567999999999999999999999999994 4789999999999997766 59999999999999
Q ss_pred EEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEe
Q 027696 125 TCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 168 (220)
Q Consensus 125 ~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~ 168 (220)
|||+|++|||||||.+ .++++|+|||++|++|||++|+|+++
T Consensus 93 wva~Vk~G~ilfEi~g--v~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 93 WVAVVKPGRILYEISG--VAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCCCCCTTCEEEEECS--SCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEECCCCEEEEEec--CCHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999999999999998 58999999999999999999999863
No 12
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=100.00 E-value=3.3e-37 Score=252.70 Aligned_cols=108 Identities=23% Similarity=0.273 Sum_probs=101.1
Q ss_pred CCCeEEEEeeccccccChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcce
Q 027696 45 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG 124 (220)
Q Consensus 45 ~fp~~~~Lvs~E~~qiss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g 124 (220)
.| -+++|+++|++||||+||||||+|+||||.+ +||+|||+|||||||+|| ++++|++++|+|++
T Consensus 29 ~f-G~~gL~a~e~~~it~~qiEAaR~ai~R~lkr-----~gk~wirv~P~~pvt~Kp---------~e~RMG~GKG~~~~ 93 (142)
T 2zjr_J 29 AF-GDYGLIAMEPAWIKSNQIEACRIVMSRHFRR-----GGKIYIRIFPDKPVTKKP---------AETRMGKGKGAVEY 93 (142)
T ss_dssp SS-SSCEEEECSCBCCBHHHHHHHHHHHHHHCSS-----CCCCCCCCCCCCEECCCS---------SSCCCSSSCCTTSE
T ss_pred ec-ceEEEEECcCCeECHHHHHHHHHHHHHHhhh-----CcEEEEEeCCCcceEcCc---------ccccccccCCCCCE
Confidence 35 5679999999999999999999999999975 678999999999999999 48899999999999
Q ss_pred EEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEEEEec
Q 027696 125 TCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 125 ~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
|||+|++|||||||.+ .++++|+|||++|++|||++|+|++++
T Consensus 94 wva~Vk~G~ilfEi~g--v~~~~A~eAlr~A~~KLP~~~kiv~~~ 136 (142)
T 2zjr_J 94 WVSVVKPGRVMFEVAG--VTEEQAKEAFRLAGHKLPIQTKMVKRE 136 (142)
T ss_dssp EBCCBCTTEEEECCCS--SCSTTTTTHHHHHHHTCSSCEEEECSC
T ss_pred EEEEECCCCEEEEEeC--CCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 9999999999999998 588999999999999999999999876
No 13
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=49.92 E-value=5 Score=29.00 Aligned_cols=48 Identities=25% Similarity=0.523 Sum_probs=35.2
Q ss_pred CCCCCCCCCCc----CCCCCCceeEEecCCCCCCCCCCCeEEEEeeccccccChhHHHHH
Q 027696 13 KNKPYPKSRFC----RGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAA 68 (220)
Q Consensus 13 ~~~pY~r~~y~----~GvP~~KI~~fd~G~~~a~~~~fp~~~~Lvs~E~~qiss~aLEAA 68 (220)
..|||||.-+| +|.|+..|+-|.+- | |+|--=+|+|+-.. -.+||.|-
T Consensus 3 ~rPpYPReA~iV~veKG~~g~~vtwyeLR---A---Dhp~PnsLISEH~t--eqEA~DAK 54 (71)
T 2kvt_A 3 TKPPYPREAYIVTIEKGKPGQTVTWYQLR---A---DHPKPDSLISEHPT--AQEAMDAK 54 (71)
T ss_dssp CCCSSCCCEEEEEEEEECSSSEEEEEEEE---E---SSSCTTEEEEEESS--HHHHHHHH
T ss_pred CCCCCCcceEEEEeecCCCCceEEEEEee---c---CCCCCCcccccCcc--HHHHhhhH
Confidence 35799998887 79999999999884 4 67777788886531 13555553
No 14
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=39.54 E-value=11 Score=22.23 Aligned_cols=16 Identities=44% Similarity=1.020 Sum_probs=13.6
Q ss_pred CCccccccccCCCCCC
Q 027696 3 RRPARCYRQIKNKPYP 18 (220)
Q Consensus 3 ~rParcYr~~~~~pY~ 18 (220)
||-+-||-.|.|.||.
T Consensus 11 rrrggcyykctnrpy~ 26 (26)
T 1cz6_A 11 RRRGGCYYKCTNRPYX 26 (26)
T ss_dssp CSSSCCEEEECCCCC-
T ss_pred HhcCceEEEccCCCCC
Confidence 6778899999999994
No 15
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=36.51 E-value=16 Score=26.49 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=28.7
Q ss_pred EeeCCCEEEEEEecCC-C--HHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS-N--SLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~-~--~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
++++|++|.+|.+... + .+.+.+.|+.+..+ +....+.+.+.
T Consensus 51 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~-~~~v~l~v~R~ 95 (108)
T 3cbz_A 51 RIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK-PGPIVLTVAKS 95 (108)
T ss_dssp CCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS-SSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC-CCeEEEEEEeC
Confidence 5789999999976543 3 57788888877322 33466666654
No 16
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=36.49 E-value=21 Score=25.95 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=29.4
Q ss_pred EEEeeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEec
Q 027696 126 CARVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 126 vArV~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
+.++++|+.|++|.+.... .+.+.+.|+.+..+--....|.+.+
T Consensus 57 aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R 103 (109)
T 1wi4_A 57 DGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103 (109)
T ss_dssp HCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEe
Confidence 3358899999999876532 6788888888774433444454443
No 17
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=34.98 E-value=37 Score=23.33 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=26.1
Q ss_pred eeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEecc
Q 027696 129 VAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 129 V~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
+++|++|.+|.+... +.+.+.++|+.+ .....+.+.+.
T Consensus 45 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~ 85 (91)
T 2vsp_A 45 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS----GKNVTLLVCGK 85 (91)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----CSEEEEEEEC-
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEeC
Confidence 689999999987765 567777777654 44556666554
No 18
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=32.22 E-value=42 Score=22.81 Aligned_cols=38 Identities=13% Similarity=0.351 Sum_probs=25.9
Q ss_pred eeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEecc
Q 027696 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
+++|++|.+|.+.... .+.+.++|+.+. ....+.+.+.
T Consensus 44 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 84 (87)
T 2pa1_A 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSP----SPLRLQLDRI 84 (87)
T ss_dssp CCTTCEEEEETTEESTTCCHHHHHHHHHTCC----SSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEec
Confidence 6899999999876543 477777777653 4555655543
No 19
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=30.97 E-value=22 Score=26.63 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=25.7
Q ss_pred eeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEec
Q 027696 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
+++|++|.+|.+.... .+.+.++|+.+ +....+.+.+
T Consensus 78 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~r 117 (123)
T 2iwq_A 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQS 117 (123)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHC----CSSEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEE
Confidence 7899999999876543 57778888765 3355555544
No 20
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=30.28 E-value=29 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=27.6
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEecccCc
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRKWGF 173 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~~Gf 173 (220)
++++|++|.+|.+... +.+.+.+.|+.+. ....+.+.+..+|
T Consensus 68 ~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~~~~~~ 112 (114)
T 2gzv_A 68 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK----GEVTIHYNKLQYY 112 (114)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SEEEEEEECCCCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEecccc
Confidence 4899999999977543 5666777776543 3455666554443
No 21
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=29.97 E-value=56 Score=22.70 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=24.4
Q ss_pred eeCCCEEEEEEecCCCH---HHHHHHHHHcccCCCCceEEEEe
Q 027696 129 VAIGQVLLSVRCKDSNS---LHAQEALRRAKFKFPGRQKIIVS 168 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~~---~~a~eALrrA~~KlP~~~kIv~~ 168 (220)
+++|++|.+|.+....- +.+.++|+.+ +....+.+.
T Consensus 55 L~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~ 93 (96)
T 2ego_A 55 LTPGDTIASVNGLNVEGIRHREIVDIIKAS----GNVLRLETL 93 (96)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHT----TTEEEEEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEE
Confidence 58899999998765433 7777777765 344455443
No 22
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=29.68 E-value=1.1e+02 Score=24.23 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=39.3
Q ss_pred cChhHHHHHHHHHHhhhhhhhCCcceeEEEEecCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCEEEEEE
Q 027696 60 VSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR 139 (220)
Q Consensus 60 iss~aLEAARiaanKyl~K~~Gk~~f~l~Irv~P~hvir~nkmls~AgADRlq~GMr~afGkp~g~vArV~~GqvIf~i~ 139 (220)
|++ +++++|-.+.+.+. |...+++ |.||+++..|--++.+| + |-|-+.|.
T Consensus 75 l~~-~ld~~r~~l~~~~~---~~~~~~~----------rldKQaAy~G~v~~~d~-----d-----------d~I~v~I~ 124 (146)
T 2ogk_A 75 LGE-QAEEILSTLEDRID---EQNVLHI----------RIDKQKAYLGEVSLTSG-----G-----------DPIAVKLR 124 (146)
T ss_dssp HGG-GHHHHHHHHHHHBC---TTCEEEE----------EECHHHHHTTCCCBCCS-----S-----------SCEEEEEE
T ss_pred HHH-HHHHHHHHHHhccC---CCceEEE----------EEEhHHHhCCCEEeecC-----C-----------CcEEEEEE
Confidence 444 47777766666552 2123333 44899888887677665 2 33444444
Q ss_pred ec--CCCHHHHHHHHHH
Q 027696 140 CK--DSNSLHAQEALRR 154 (220)
Q Consensus 140 ~~--~~~~~~a~eALrr 154 (220)
.+ +...+.|+|.++.
T Consensus 125 ~~~y~~k~e~~~~~~~~ 141 (146)
T 2ogk_A 125 LVTYPSKREKVIEFARE 141 (146)
T ss_dssp EECSSCCHHHHHHHHHH
T ss_pred EecccchHHHHHHHHHH
Confidence 44 6778888888874
No 23
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.47 E-value=52 Score=30.68 Aligned_cols=28 Identities=32% Similarity=0.286 Sum_probs=25.4
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHc
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA 155 (220)
+|+.||+|++|....+..+.|.+.|+.|
T Consensus 379 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 406 (423)
T 2dsj_A 379 RVERGEALALVYHRRRGLEEALGHLREA 406 (423)
T ss_dssp EECTTSEEEEEEECSSSHHHHHHHHHHH
T ss_pred EeCCCCeEEEEEeCCccHHHHHHHHHhC
Confidence 7899999999999877889999998887
No 24
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=29.38 E-value=22 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=21.2
Q ss_pred EeeCCCEEEEEEecCCC---HHHHHHHHHHc
Q 027696 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRA 155 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~---~~~a~eALrrA 155 (220)
++++|++|.+|.+.+.. .+.+.++|+.+
T Consensus 54 ~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 54 SLHVGDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp CCCTTCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 37889999999877654 57777777764
No 25
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=29.27 E-value=12 Score=26.21 Aligned_cols=39 Identities=15% Similarity=0.423 Sum_probs=27.1
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
++++|++|.+|.+... +.+.+.+.|+.+. ....+.+.+.
T Consensus 39 ~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~----~~v~L~v~~~ 80 (88)
T 3e17_A 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSR----GKLQLVVLRD 80 (88)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHTT----TEEEEEECCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEeCC
Confidence 5789999999976643 6677888887653 4555555443
No 26
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=28.98 E-value=26 Score=24.88 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=22.9
Q ss_pred EEEeeCCCEEEEEEecCC---CHHHHHHHHHHc
Q 027696 126 CARVAIGQVLLSVRCKDS---NSLHAQEALRRA 155 (220)
Q Consensus 126 vArV~~GqvIf~i~~~~~---~~~~a~eALrrA 155 (220)
++.+++|++|.+|.+... +.+.+.+.|+.+
T Consensus 53 ~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 53 SGALSIGDRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp GSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 345789999999988765 667777777764
No 27
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.98 E-value=94 Score=21.67 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=26.4
Q ss_pred eeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEecccC
Q 027696 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRKWG 172 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~~G 172 (220)
+++|++|.+|.+.... .+.+.++|+.+ .....+.+.+..+
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~~~ 90 (102)
T 2d90_A 48 LKNNDLVVAVNGKSVEALDHDGVVEMIRKG----GDQTTLLVLDKEA 90 (102)
T ss_dssp CCTTCEEEEESSCBCTTSCHHHHHHHHHHS----TTEEEEEECSTTC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEEECCC
Confidence 5889999999887543 35666667653 3355666655444
No 28
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=28.73 E-value=8.5 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=21.8
Q ss_pred EEeeCCCEEEEEEecCC---CHHHHHHHHHHcc
Q 027696 127 ARVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (220)
Q Consensus 127 ArV~~GqvIf~i~~~~~---~~~~a~eALrrA~ 156 (220)
|.+++|++|.+|.+... +.+.+.++|+.+.
T Consensus 45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 77 (87)
T 4e34_A 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR 77 (87)
T ss_dssp SCCCTTEEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 46789999999976643 4567777777543
No 29
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.41 E-value=57 Score=22.56 Aligned_cols=39 Identities=13% Similarity=0.371 Sum_probs=25.8
Q ss_pred EeeCCCEEEEEEecCCCH---HHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDSNS---LHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~---~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
-+++|++|.+|.+....- +.+.++|+... ....+.+.+.
T Consensus 47 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 88 (94)
T 1vb7_A 47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQSA----SPLRLQLDRS 88 (94)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTCC----SSEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CcEEEEEEEC
Confidence 368999999998765332 66666666542 4556666554
No 30
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.41 E-value=37 Score=24.62 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=29.7
Q ss_pred EeeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
.+++|++|.+|.+.... .+.+.+.++.+.-.......+.+.+.
T Consensus 60 GL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 60 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp CCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEcc
Confidence 47899999999876542 46777788777543334556666654
No 31
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=26.30 E-value=52 Score=30.67 Aligned_cols=28 Identities=25% Similarity=0.461 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHc
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA 155 (220)
+|+.||+|++|....+..+.|.+.|+.|
T Consensus 387 ~v~~g~~l~~i~~~~~~~~~a~~~~~~~ 414 (433)
T 1brw_A 387 RVQKGEALATIHSNRPDVLDVKEKIEAA 414 (433)
T ss_dssp EECTTCEEEEEEESSSCCHHHHHHHHTT
T ss_pred EECCCCeEEEEEcCCccHHHHHHHHHhc
Confidence 7899999999999877889999988877
No 32
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=26.29 E-value=27 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=25.6
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEec
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
++++|++|.+|.+... +.+.+.++|+.+ .....+.+.+
T Consensus 72 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~----g~~v~l~v~R 112 (117)
T 2byg_A 72 RLQVGDRLLMVNNYSLEEVTHEEAVAILKNT----SEVVYLKVGK 112 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEe
Confidence 4789999999987654 456677777654 3445555554
No 33
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=26.04 E-value=79 Score=21.76 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=25.2
Q ss_pred eeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEeccc
Q 027696 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRKW 171 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~~ 171 (220)
+++|++|.+|.+.... .+.+.++|+.+ .....+.+.+..
T Consensus 48 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----g~~v~l~v~r~~ 89 (96)
T 2v90_A 48 MQAGDRLVAVAGESVEGLGHEETVSRIQGQ----GSCVSLTVVDPE 89 (96)
T ss_dssp CCTTEEEEEETTEECTTCCHHHHHHHHHTT----TTEEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCEEEEEEECCC
Confidence 6889999999876543 36666666653 344556665543
No 34
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=25.60 E-value=76 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=20.0
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcc
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAK 156 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~ 156 (220)
|+++|++|.+|.+... ..+.+.+.|+.+.
T Consensus 62 rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~ 93 (107)
T 3nfk_A 62 RLNEGDQVVLINGRDIAEHTHDQVVLFIKASC 93 (107)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHCGG
T ss_pred ccCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Confidence 3789999999976543 3456666676654
No 35
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=25.48 E-value=15 Score=25.71 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=28.9
Q ss_pred CcceEEEEeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEec
Q 027696 121 KPQGTCARVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 121 kp~g~vArV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
.|-...|.+++|+.|.+|.+... +.+.+.+.|+.+.- +..+.+.+
T Consensus 36 spA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~----~v~l~v~r 83 (88)
T 1kwa_A 36 GMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG----SITFKIVP 83 (88)
T ss_dssp SHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE----EEEEEEEC
T ss_pred CHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC----cEEEEEEC
Confidence 33333345799999999977654 46777777877532 44554444
No 36
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=25.22 E-value=73 Score=22.16 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=25.9
Q ss_pred eeCCCEEEEEEecCC-C--HHHHHHHHHHcccCCCCceEEEEecc
Q 027696 129 VAIGQVLLSVRCKDS-N--SLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 129 V~~GqvIf~i~~~~~-~--~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
+++|++|.+|.+... + .+.+.++|+.+ +....+.+.+.
T Consensus 58 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~r~ 98 (103)
T 2fcf_A 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKA----GNPVVFMVQSI 98 (103)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTC----CSSEEEEEECC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCcEEEEEEEC
Confidence 689999999987643 2 56677777654 44566666543
No 37
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=25.16 E-value=53 Score=25.05 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=27.6
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCC-ceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPG-RQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~-~~kIv~~~~ 170 (220)
++++|++|.+|.+... +.+.+.++|+.+. |+ ...+.+.+.
T Consensus 67 ~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~---~G~~v~l~V~R~ 110 (126)
T 1wif_A 67 ILQPGDVLISVGHANVLGYTLREFLKLLQNIT---IGTVLQIKAYRG 110 (126)
T ss_dssp SSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC---SSCEEEEEEESS
T ss_pred CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCC---CCCEEEEEEEEC
Confidence 4789999999998866 4567777776432 23 445666665
No 38
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=25.01 E-value=42 Score=24.83 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=33.2
Q ss_pred CEEEEEEecCCCHHHHHHHHHHcccC-CCCceEEEEecccCcccc
Q 027696 133 QVLLSVRCKDSNSLHAQEALRRAKFK-FPGRQKIIVSRKWGFTKF 176 (220)
Q Consensus 133 qvIf~i~~~~~~~~~a~eALrrA~~K-lP~~~kIv~~~~~Gft~~ 176 (220)
.+.+++-+.++..+.+.+|++.+... =|+.-+|+++.=.-+..+
T Consensus 58 k~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~ri 102 (112)
T 2eg2_A 58 KVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRI 102 (112)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEECSCCBCT
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHhEEEe
Confidence 45788888888999999999987754 577778888865444433
No 39
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=24.91 E-value=42 Score=24.75 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=26.7
Q ss_pred EeeCCCEEEEEEecCC----CHHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS----NSLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~----~~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
++++|++|.+|.+... +.+.+.++|+.+ .....+.+.+.
T Consensus 72 ~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~----~~~v~l~v~r~ 114 (128)
T 2db5_A 72 RLKENDQILAINHTPLDQNISHQQAIALLQQT----TGSLRLIVARE 114 (128)
T ss_dssp CCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC----CSEEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcC----CCeEEEEEEcC
Confidence 4899999999998654 466777777663 23445555544
No 40
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=24.29 E-value=29 Score=25.73 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=27.0
Q ss_pred EeeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
.+++|++|.+|.+.... .+.+.+.|+.+. ....+.+.+.
T Consensus 71 gL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~----~~v~l~v~r~ 112 (120)
T 2iwo_A 71 KLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS----GSIEMQVVAG 112 (120)
T ss_dssp CCCTTCEEEEETTEECTTCBHHHHHHHHHHCC----SEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEEC
Confidence 67999999999876432 577777887764 3455555543
No 41
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=24.28 E-value=40 Score=24.30 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=26.8
Q ss_pred EeeCCCEEEEEEecCC----CHHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS----NSLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~----~~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
++++|++|.+|.+... +.+.+.++|+.+ .....+.+.+.
T Consensus 67 ~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~----~~~v~l~v~R~ 109 (117)
T 2o2t_A 67 RLKETDQILAINGQALDQTITHQQAISILQKA----KDTVQLVIARG 109 (117)
T ss_dssp CCCTTCEEEEETTEECCTTSCHHHHHHHHHHC----CSEEEEEEESS
T ss_pred CCCCCCEEEEECCEECCCCCCHHHHHHHHHcC----CCEEEEEEEeC
Confidence 4899999999987653 567777777663 23455666554
No 42
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.17 E-value=1e+02 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=25.9
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
++++|++|.+|.+... +...+..+++.+ .....+.+.+.
T Consensus 54 ~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~v~R~ 95 (110)
T 1um1_A 54 RLSLGDRILEVNGSSLLGLGYLRAVDLIRHG----GKKMRFLVAKS 95 (110)
T ss_dssp CCCTTCEEEEESSCBCSSCCHHHHHHHHHTC----CSEEEEEEECC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEeC
Confidence 4789999999987654 355566666553 33456666654
No 43
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=24.02 E-value=1.1e+02 Score=21.75 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=25.3
Q ss_pred EeeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEec
Q 027696 128 RVAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
++++|++|.+|.+.... .+.+.++|+.+. ....+.+.+
T Consensus 56 ~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g----~~v~l~v~R 96 (111)
T 2dlu_A 56 RLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG----NSVRMLVAR 96 (111)
T ss_dssp CCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhCC----CeEEEEEEe
Confidence 37899999999887543 466667776642 344555544
No 44
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=23.99 E-value=38 Score=24.92 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=26.5
Q ss_pred EeeCCCEEEEEEecCC---CHHHHHHHHHHcccCCCCceEEEEecc
Q 027696 128 RVAIGQVLLSVRCKDS---NSLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~---~~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
++++|++|.+|.+... +.+.+.++|+.+. ....+.+.+.
T Consensus 71 ~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~----~~v~l~v~R~ 112 (117)
T 2fne_A 71 RLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK----GTVTLMVLSS 112 (117)
T ss_dssp CCCTTCEEEEETTEECTTCCHHHHHHHHHHCC----SSEEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CeEEEEEEeC
Confidence 4889999999987654 4667777777653 3455555543
No 45
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=23.68 E-value=1.4e+02 Score=21.87 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=33.6
Q ss_pred EecCCCHHHHHHHHHHcccCCCCceEEEEecccCccccChHHHHhhhhc
Q 027696 139 RCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSE 187 (220)
Q Consensus 139 ~~~~~~~~~a~eALrrA~~KlP~~~kIv~~~~~Gft~~~~~e~~~~~~~ 187 (220)
++..|+.+.=+++|+..+.. +|+.....|-+..+|.+|.+|.+.
T Consensus 9 St~~Qsl~~Q~~~l~~~~~~-----~i~~d~~Sg~~~~~Rp~l~~ll~~ 52 (124)
T 3pkz_A 9 SSLDQNLERQLENLKTFGAE-----KIFTEKQSGKSIENRPILQKALNF 52 (124)
T ss_dssp SSTTSCHHHHHHHHHHTTCS-----EEEEEESCSSCSTTCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHhCCc-----eEEEEcccCCChhcCHHHHHHHHH
Confidence 34566788888888887653 777777778765899999999875
No 46
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=34 Score=23.87 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=21.3
Q ss_pred EeeCCCEEEEEEecCC--CHHHHHHHHHHc
Q 027696 128 RVAIGQVLLSVRCKDS--NSLHAQEALRRA 155 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~--~~~~a~eALrrA 155 (220)
.+++|++|.+|.+... +.+.+.+.|+.+
T Consensus 47 ~L~~GD~I~~ing~~v~~~~~~~~~~l~~~ 76 (91)
T 2e7k_A 47 LLHVGDIIKEVNGQPVGSDPRALQELLRNA 76 (91)
T ss_dssp CCCTTCEEEEETTEECTTCHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCEECCCCHHHHHHHHHcC
Confidence 4688999999977654 667777777754
No 47
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=22.86 E-value=69 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.7
Q ss_pred EeeCCCEEEEEEecCCCHHHHHHHHHHc
Q 027696 128 RVAIGQVLLSVRCKDSNSLHAQEALRRA 155 (220)
Q Consensus 128 rV~~GqvIf~i~~~~~~~~~a~eALrrA 155 (220)
+|+.||+|++|...+...+.|.+.|+.|
T Consensus 390 ~V~~g~~l~~i~~~~~~~~~a~~~~~~a 417 (436)
T 3h5q_A 390 KVEEGESLLTIHSNRQDVDDVVKKLDSS 417 (436)
T ss_dssp EECTTSEEEEEEESSSCCHHHHHHHHHH
T ss_pred EeCCCCeEEEEeCChHhHHHHHHHHHhc
Confidence 7899999999995566778898888876
No 48
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=22.80 E-value=29 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=23.4
Q ss_pred ccChhHHHHHHHHHHhhhhhhhCCcceeEEE
Q 027696 59 NVSSEALEAARIACNKYMAKFAGKDAFHLRV 89 (220)
Q Consensus 59 qiss~aLEAARiaanKyl~K~~Gk~~f~l~I 89 (220)
-||...++|.+.-||-||.+.-+.+.|||.+
T Consensus 83 fvT~DM~~~S~~NAneyL~~e~~~d~yhLF~ 113 (130)
T 2euc_A 83 YVTADMFETSKANAHAFLSRRHGNAAYHLFV 113 (130)
T ss_dssp GCCHHHHHHHHHHHHHHTC-----CCCCCCC
T ss_pred HHHHHHHHHHHHhHHHHHHhccCcceeeeec
Confidence 5788999999999999999988999999854
No 49
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=21.98 E-value=84 Score=21.00 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=23.8
Q ss_pred eeCCCEEEEEEecCCC-H--HHHHHHHHHcccCCCCceEEEEeccc
Q 027696 129 VAIGQVLLSVRCKDSN-S--LHAQEALRRAKFKFPGRQKIIVSRKW 171 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~-~--~~a~eALrrA~~KlP~~~kIv~~~~~ 171 (220)
+++|++|.+|.+.... . +.+.+.|+.+ +....+.+.+.-
T Consensus 41 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~~ 82 (83)
T 2kv8_A 41 LRAGDQILAVNEINVKKASHEDVVKLIGKC----SGVLHMVIAEGV 82 (83)
T ss_dssp CCTTCEEEEETTEECSSCCHHHHHHHHTTC----SSCEEEEEECCC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEEcCC
Confidence 6899999999876432 2 4555555433 234556665543
No 50
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.79 E-value=1.1e+02 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=24.0
Q ss_pred eeCCCEEEEEEecCCC---HHHHHHHHHHcccCCCCceEEEEecc
Q 027696 129 VAIGQVLLSVRCKDSN---SLHAQEALRRAKFKFPGRQKIIVSRK 170 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~---~~~a~eALrrA~~KlP~~~kIv~~~~ 170 (220)
+++|++|.+|.+.... .+.+.+.|+.+ +....+.+.+.
T Consensus 54 L~~GD~I~~vng~~v~~~~~~~~~~~l~~~----~~~v~l~v~R~ 94 (100)
T 1whd_A 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSC----PSEIILLVWRV 94 (100)
T ss_dssp CCSSCEEEEETTEECTTCCHHHHHHHHHHC----SSEEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCeEEEEEEEC
Confidence 6899999999876543 45566666553 33345555443
No 51
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.95 E-value=1.4e+02 Score=23.93 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=32.2
Q ss_pred ceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHc----ccCCCC
Q 027696 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG 161 (220)
Q Consensus 123 ~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA----~~KlP~ 161 (220)
.+.+-++.+|+.++-|-+-..|...|.+|.+.+ |...|+
T Consensus 79 ~HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~~Pi 121 (148)
T 3rpf_A 79 AHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPI 121 (148)
T ss_dssp EEEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhcCCE
Confidence 566678999999999999999999999887544 666776
No 52
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=20.84 E-value=84 Score=21.33 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=22.1
Q ss_pred eeCCCEEEEEEecCCC-H--HHHHHHHHHcccCCCCceEEEEec
Q 027696 129 VAIGQVLLSVRCKDSN-S--LHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 129 V~~GqvIf~i~~~~~~-~--~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
+++|++|.+|.+.... . +.+.++|+.+ .....+.+.+
T Consensus 46 l~~GD~I~~ing~~v~~~~~~~~~~~l~~~----~~~v~l~v~r 85 (90)
T 2he4_A 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAR----EDEARLLVVG 85 (90)
T ss_dssp CCTTCEEEEETTEECTTSCHHHHHHHHTTS----SSEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHcC----CCcEEEEEEc
Confidence 5789999999765432 2 5555566543 3444555544
No 53
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=20.61 E-value=1.3e+02 Score=21.83 Aligned_cols=41 Identities=22% Similarity=0.097 Sum_probs=27.0
Q ss_pred cceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHcccCCCCceEE
Q 027696 122 PQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 165 (220)
Q Consensus 122 p~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA~~KlP~~~kI 165 (220)
-.|||--..-|.|.+++.+.....+.-+++|+ .+-|...+|
T Consensus 36 L~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~---~~~p~~a~V 76 (99)
T 2vh7_A 36 LVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE---TRGSPKSHI 76 (99)
T ss_dssp CEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH---HTCSTTCEE
T ss_pred CcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH---hcCCCceEE
Confidence 58999999999999999986443444444443 244544443
No 54
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=20.31 E-value=1.1e+02 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=30.8
Q ss_pred eEEEEeeCCCEEEEEEecCCCHHHHHHHHHHc----ccCCCC
Q 027696 124 GTCARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG 161 (220)
Q Consensus 124 g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA----~~KlP~ 161 (220)
+.+-++.+|+.++-|-+-..+...|.+|++.+ |...|+
T Consensus 81 HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 122 (149)
T 2q5w_E 81 HRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPI 122 (149)
T ss_dssp EECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCCE
Confidence 44457999999999999999999999987654 666776
No 55
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=20.29 E-value=1.1e+02 Score=24.33 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.7
Q ss_pred cceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHc----ccCCCC
Q 027696 122 PQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG 161 (220)
Q Consensus 122 p~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA----~~KlP~ 161 (220)
..+.+-++.+|+.++-|-+-..|...|.+|++.+ |...|+
T Consensus 87 i~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 130 (147)
T 2wp4_A 87 VAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPI 130 (147)
T ss_dssp EEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCCE
Confidence 3566668999999999999999999999987654 667776
No 56
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=20.17 E-value=1.1e+02 Score=24.36 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=31.6
Q ss_pred ceEEEEeeCCCEEEEEEecCCCHHHHHHHHHHc----ccCCCC
Q 027696 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA----KFKFPG 161 (220)
Q Consensus 123 ~g~vArV~~GqvIf~i~~~~~~~~~a~eALrrA----~~KlP~ 161 (220)
.+.+-++.+|+.++-|-+-..|...|.+|++.+ |...|+
T Consensus 82 ~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aPi 124 (150)
T 1fm0_E 82 IHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPF 124 (150)
T ss_dssp EEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCE
T ss_pred EEEEcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCCE
Confidence 445558999999999999999999999987654 666776
No 57
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=20.10 E-value=46 Score=26.55 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=25.7
Q ss_pred EeeCCCEEEEEEecC---CCHHHHHHHHHHcccCCCCceEEEEec
Q 027696 128 RVAIGQVLLSVRCKD---SNSLHAQEALRRAKFKFPGRQKIIVSR 169 (220)
Q Consensus 128 rV~~GqvIf~i~~~~---~~~~~a~eALrrA~~KlP~~~kIv~~~ 169 (220)
++++|++|++|.+.. ...+.|.+.|+.+. ....+.+.+
T Consensus 129 ~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g----~~v~L~V~R 169 (170)
T 3egg_C 129 RIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK----GRVRFMIGR 169 (170)
T ss_dssp CCCTTCEEEEETTEECTTBCHHHHHHHHHHCC----SEEEEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC----CEEEEEEEe
Confidence 589999999997653 34567777887643 345555543
No 58
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=20.02 E-value=84 Score=23.37 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=33.9
Q ss_pred CEEEEEEecCCCHHHHHHHHHHcccC-CCCceEEEEecccCccc
Q 027696 133 QVLLSVRCKDSNSLHAQEALRRAKFK-FPGRQKIIVSRKWGFTK 175 (220)
Q Consensus 133 qvIf~i~~~~~~~~~a~eALrrA~~K-lP~~~kIv~~~~~Gft~ 175 (220)
.+.+++-+.++..+.+.+|++.+... =|+.-+|+++.=.-+..
T Consensus 62 k~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pVe~~~r 105 (116)
T 2ns1_B 62 KVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIR 105 (116)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEESCCBC
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEhHHEEE
Confidence 57788888888999999999988776 78888988886544433
Done!