RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027696
(220 letters)
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_I 1s1i_I 3jyw_I
Length = 224
Score = 303 bits (777), Expect = e-106
Identities = 191/220 (86%), Positives = 204/220 (92%)
Query: 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENV
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 61 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
SSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSD 180
KPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREE 180
Query: 181 YLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA 220
Y++ K+E RI+ DGVNA+LLG HG LA R PG+AFL T
Sbjct: 181 YVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAETI 220
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_H 4a1c_H 4a1e_H
Length = 215
Score = 301 bits (771), Expect = e-105
Identities = 138/214 (64%), Positives = 167/214 (78%)
Query: 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
MGRRPARCYRQ K KPYPKSR+ RGVPD +IRIYD G KK V+EFP+ VH+VS EKE +
Sbjct: 1 MGRRPARCYRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQI 60
Query: 61 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
+SEALEAARIA NK + KF KDAFHLR RVHP+HVLRINKMLSCAGADRLQ+GMRGAFG
Sbjct: 61 TSEALEAARIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFG 120
Query: 121 KPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSD 180
K G ARV IG +L SVR K+ + +A +AL RAK KFPGRQK++ S+KWGFTK +R+
Sbjct: 121 KALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQ 180
Query: 181 YLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRA 214
Y R +++ ++V DG N K++G GPL+ + R
Sbjct: 181 YSRLRNQKKLVTDGSNVKVIGERGPLSRLELFRK 214
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 214
Score = 296 bits (759), Expect = e-103
Identities = 145/214 (67%), Positives = 167/214 (78%)
Query: 1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60
MGRRPARCYR KNKPYPKSRFCRGVPD KIRI+D+G KK VDEFP C H+VS E E +
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 61 SSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
SSEALEAARI NKYM K GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSD 180
KPQGT A+V IGQV++S+R K N H EALRRAKFKFPGRQKI +S+KWGFTKF+ +
Sbjct: 121 KPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 181 YLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRA 214
+ +E R++PDG K + GPL + +
Sbjct: 181 FENMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
Length = 219
Score = 286 bits (734), Expect = 2e-99
Identities = 138/205 (67%), Positives = 155/205 (75%)
Query: 3 RRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSS 62
RRPARCYR KNKPYPKSR+ R VPD KIRIYD+G KK VDEFP CVHLVS E E +SS
Sbjct: 1 RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSS 60
Query: 63 EALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 122
EALEAARI NKYM +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP
Sbjct: 61 EALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKP 120
Query: 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYL 182
G ARV IGQ++ SVR KDSN E LRRA++KFPG+QKII+S+KWGFT R +YL
Sbjct: 121 HGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYL 180
Query: 183 RFKSENRIVPDGVNAKLLGCHGPLA 207
+ + + DG K L G L
Sbjct: 181 KKREAGEVKDDGAFVKFLSKKGSLE 205
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H*
1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H*
1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H*
2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Length = 171
Score = 236 bits (604), Expect = 3e-80
Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 1/166 (0%)
Query: 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
+PA YR I Y + + G+P KI + +G K+K D++P + L+ E +
Sbjct: 1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHG 60
Query: 64 ALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 122
+LEA+R++ N+++ K G++ + + +R P VLR NK + AGADR+ GMR AFGK
Sbjct: 61 SLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKI 120
Query: 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 168
GT ARV G+ L + C ++ H +EA RRA K +I S
Sbjct: 121 VGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSS 166
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Length = 151
Score = 216 bits (550), Expect = 2e-72
Identities = 107/148 (72%), Positives = 122/148 (82%)
Query: 34 YDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHP 93
+D+G KK VDEFP C H+VS E E +SSEALEAARI NKYM K GKD FH+RVR+HP
Sbjct: 3 FDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHP 62
Query: 94 FHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALR 153
FHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K N H EALR
Sbjct: 63 FHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALR 122
Query: 154 RAKFKFPGRQKIIVSRKWGFTKFSRSDY 181
RAKFKFPGRQKI +S+KWGFTKF+ ++
Sbjct: 123 RAKFKFPGRQKIHISKKWGFTKFNADEF 150
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J*
1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J*
1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H*
1giy_P ...
Length = 157
Score = 211 bits (539), Expect = 1e-70
Identities = 42/167 (25%), Positives = 61/167 (36%), Gaps = 13/167 (7%)
Query: 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
+P +R Y + + G+P I + +G +P V V + +
Sbjct: 1 KPGAHFRNSIKPAYTRREYISGIPGKGIAQFKMG-NNGAGPTYPAQVENVVEKPVQIRHN 59
Query: 64 ALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123
ALEAAR A N+++ + R+R PFHV+R ++ GMR FGK
Sbjct: 60 ALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIR----------EQDGDGMRAPFGKSV 109
Query: 124 GTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 170
GT AR + A RRA K I S
Sbjct: 110 GTAARSHGANHDFIAWVNPDP--AVEFAWRRAYMKVTPTVNIDSSPA 154
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J
1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K*
1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N
1vou_N 1vow_N 1voy_N ...
Length = 142
Score = 55.8 bits (134), Expect = 2e-10
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 52 LVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRL 111
L++ E + S +EA RI +++ + + +R+ P +
Sbjct: 35 LIAMEPAWIKSNQIEACRIVMSRHF-----RRGGKIYIRIFPDKPVTKKPA--------- 80
Query: 112 QTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKW 171
+T M G + + V G+V+ V A+EA R A K P + K++ +
Sbjct: 81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEE--QAKEAFRLAGHKLPIQTKMVKREVY 138
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M
2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M
2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Length = 136
Score = 50.0 bits (119), Expect = 3e-08
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 60 VSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119
+++ +EAAR A + + K + +RV P + + M
Sbjct: 41 LTARQIEAARRAMTRAV-----KRQGKIWIRVFPDKPITEKPL---------AVRMGKGK 86
Query: 120 GKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 167
G + A + G+VL + A+EA + A K P + +
Sbjct: 87 GNVEYWVALIQPGKVLYEMDGVPEE--LAREAFKLAAAKLPIKTTFVT 132
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13,
mitochondrial; mitochondrial ribosome, large ribosomal
subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB:
3iy9_I
Length = 118
Score = 49.3 bits (117), Expect = 4e-08
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 52 LVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRL 111
+++ + E R+ N+ M + PF + +
Sbjct: 19 ILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWR---VPAPFKPITRKSV--------- 66
Query: 112 QTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 164
M G G V G++++ + + Q L + K P K
Sbjct: 67 GHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEE-VQGFLDQVAHKLPFAAK 118
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 135
Score = 47.7 bits (113), Expect = 2e-07
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 60 VSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAF 119
++S +EA R A + + + VR+ P + + +T M
Sbjct: 42 ITSRQIEAGRRAMTRNA-----RRGGKIWVRIFPDKPVTVRPA---------ETRMGSGK 87
Query: 120 GKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 167
G P+ A V G++L + N A+ A+ A K P R + I+
Sbjct: 88 GSPEYWVAVVKPGRILYEISGVAEN--IARRAVAIAASKMPIRTQFII 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 43/313 (13%), Positives = 89/313 (28%), Gaps = 102/313 (32%)
Query: 3 RRPARCY---RQIKNKPYPK---SRFCRGVPDPKIRIYDV----GMKKKGVDE------- 45
+ + Y R + +P+ K S R V + ++ + G +E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 46 -----------------------------FPFCVHLVSW--EKENV-SSEALEAARIACN 73
F ++++ W N + L + I+C
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 74 --------KYM--AKFAGKDAFHLRVRVH--PFHVLRINKMLSCAGAD------------ 109
Y+ AK G LR + H + ++ A D
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 110 -RL--QTGMRG--AFGK----PQGTCARVAIGQV----LLSVRCKDSNSLHAQEALRRAK 156
+ G+R A+ P + + +LS+ + Q+ + +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS--NLTQEQVQDYVNKTN 357
Query: 157 FKFPGRQKIIVSRKWGFTKF-----SRSDY-LRFKSENRIVPDGVN-AKLLGCHGPLASR 209
P +++ +S G +S Y L P G++ +++ P + R
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-----PFSER 412
Query: 210 QP--GRAFLHATA 220
+ FL +
Sbjct: 413 KLKFSNRFLPVAS 425
Score = 39.3 bits (91), Expect = 8e-04
Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 79/201 (39%)
Query: 54 SWEK-ENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVH--------PFHVLRINK--- 101
SWE +A+ F + VR + P +L +
Sbjct: 288 SWESFFVSVRKAITVL----------------FFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 102 ------MLSCAGADR--LQTGMRGAFGKPQGTCARVAIG-QVLLSVRCKDSN-------- 144
MLS + + +Q + T + + G QV +S+ N
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVN-------KTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 145 SLHA-QEALRRAK-------FKFPGRQKIIVSRKWGFTKFSR----------SDYLRFKS 186
SL+ LR+AK + P + RK KFS S L +
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSE-----RK---LKFSNRFLPVASPFHSHLLV-PA 435
Query: 187 ENRIVPDGVNAKLLGCHGPLA 207
+ I D V + +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQ 456
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 7e-04
Identities = 34/240 (14%), Positives = 58/240 (24%), Gaps = 78/240 (32%)
Query: 10 RQIKNKPYPKSRFC----RGVPDPK-IRIYDVGMK------KKGVDEF-----PFCVHLV 53
R +K+KPY C V + K +++ K K V +F + L
Sbjct: 236 RLLKSKPYEN---CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 54 SWEKENVSSEALEAARIACNKYMAKFAGKDAFHLR---VRVHPFHVLRINKMLSCAGADR 110
E + K+ L + +P + I + + G
Sbjct: 293 HHSMTLTPDEVKS--------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLAT 343
Query: 111 LQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-----SNSLHAQE-ALRRAKFK----FP 160
V C +SL+ E A R F FP
Sbjct: 344 WDN---------------------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 161 GRQKI---IVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLH 217
I ++S W + +V L+ + +
Sbjct: 383 PSAHIPTILLSLIWF--------DVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIP 429
Score = 29.1 bits (64), Expect = 1.6
Identities = 23/201 (11%), Positives = 47/201 (23%), Gaps = 62/201 (30%)
Query: 14 NKPYPKSRFCRGVPDPKIR-------------IYDVGMKKKG--------------VDEF 46
N+ + K R P K+R I G+ G +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 47 PFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCA 106
F + ++ + N LE + + + + ++ H ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQ-------- 231
Query: 107 GADRLQTGMRGAFGKPQGTC----ARVAIGQVL--LSVRCK------DSNSLHAQEALRR 154
L+ ++ KP C V + ++ CK A
Sbjct: 232 --AELRRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 155 AKFKFPGRQKIIVSRKWGFTK 175
+ T
Sbjct: 287 THIS-------LDHHSMTLTP 300
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 28.3 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 155 AKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRI 190
KF FPGR S KW + F D+ + +RI
Sbjct: 140 TKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRI 175
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta
fold, unknown function; 2.55A {Pyrococcus horikoshii}
Length = 226
Score = 26.5 bits (58), Expect = 6.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 129 VAIGQVLLSVRCKDSNSLHAQEALRRA 155
+AI Q +SV DS +H ++ + A
Sbjct: 198 LAIKQGDVSVEVFDSAEIHMRKLIELA 224
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 26.8 bits (59), Expect = 6.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 155 AKFKFPGRQKIIVSRKWGFTKFSRSDY 181
F FPGR + W F +D+
Sbjct: 261 TGFNFPGRNGEYSNFTWNGQCFDGTDW 287
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous
domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP:
c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Length = 228
Score = 26.5 bits (58), Expect = 6.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 129 VAIGQVLLSVRCKDSNSLHAQEALRRA 155
V + Q L V D + A+ A++ A
Sbjct: 199 VVLKQDDLKVPLIDPMDVIAEVAVKVA 225
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 26.8 bits (59), Expect = 6.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 155 AKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEN 188
+F FPGR S KW + F D+ + + N
Sbjct: 141 TRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLN 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.436
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,489,146
Number of extensions: 202781
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 24
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)