RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027696
(220 letters)
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 224 bits (573), Expect = 4e-76
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
Query: 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
+PA YR I Y + + G+P KI + +G K+K D++P + L+ E +
Sbjct: 1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHG 60
Query: 64 ALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKP 122
+LEA+R++ N+++ K G++ + + +R P VLR NK + AGADR+ GMR AFGK
Sbjct: 61 SLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKI 120
Query: 123 QGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 165
GT ARV G+ L + C ++ H +EA RRA K +I
Sbjct: 121 VGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 222 bits (567), Expect = 4e-75
Identities = 55/165 (33%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Query: 4 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 63
+P YR Y + + G+P KI +D+G +P V LV + +
Sbjct: 1 KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMG-NNGAGPTYPAQVELVVEKPVQIRHN 59
Query: 64 ALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123
ALEAAR+A N+Y+ + R+R PFHV+R NK + A A GMR FGKP
Sbjct: 60 ALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPV 119
Query: 124 GTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVS 168
GT ARV + + +EA RRAK K I S
Sbjct: 120 GTAARVHGANHIFIAWVNPDP--NVEEAWRRAKMKVTPTINIDSS 162
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 204 bits (520), Expect = 2e-68
Identities = 104/137 (75%), Positives = 114/137 (83%)
Query: 40 KKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRI 99
K VDEFP C H+VS E E +SSEALEAARI NKYM K GKD FH+RVR+HPFHV+RI
Sbjct: 1 KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRI 60
Query: 100 NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKF 159
NKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K N H EALRRAKFKF
Sbjct: 61 NKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKF 120
Query: 160 PGRQKIIVSRKWGFTKF 176
PGRQKI +S+KWGFTKF
Sbjct: 121 PGRQKIHISKKWGFTKF 137
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 49.8 bits (119), Expect = 9e-09
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 56 EKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM 115
+ +++ +EAAR A + + K + +RV P + + M
Sbjct: 35 GRGRLTARQIEAARRAMTRAV-----KRQGKIWIRVFPDKPITEKPL---------AVRM 80
Query: 116 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 167
G + A + G+VL + A+EA + A K P + +
Sbjct: 81 GKGKGNVEYWVALIQPGKVLYEMDGVPEEL--AREAFKLAAAKLPIKTTFVT 130
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 45.2 bits (107), Expect = 6e-07
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 56 EKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGM 115
E ++++ +EAAR+A ++ + + +R+ P + G +
Sbjct: 33 EPAWITAQQIEAARVAMVRHF-----RRGGKIFIRIFPDKPYTKKPLEVRMGKGK----- 82
Query: 116 RGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 167
G +G A V G+V+ V A EALR A K P + KI+
Sbjct: 83 ----GNVEGYVAVVKPGRVMFEVAGVTEEQ--AMEALRIAGHKLPIKTKIVR 128
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.5 bits (59), Expect = 1.3
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 20 SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKF 79
C D K+R +DV K+ + ++ +++ E A +A+
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKE--------RITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353
Query: 80 AGKDAFHLRVRVHPFHVLRINKMLSCAGADR 110
D L+ +N+ L C DR
Sbjct: 354 GVFDVKFLKKGWRSGMGADLNESLCCVCLDR 384
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 25.7 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 133 QVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTK 175
L V+ D + +A R+A PG Q+ I +T
Sbjct: 15 NRQLKVKVADRRVISTTDAERQAV-TPPGLQEAINDLVKKYTL 56
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 25.7 bits (55), Expect = 6.1
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 31 IRIYDVGMKKKGVDEFPFCVHLVSWEK--ENVSSEALEAARIACNKYMAKFAGKDAFHLR 88
+ G VD H+ + + + ++ E + A I + + G+D +
Sbjct: 346 VVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK 405
Query: 89 VRVHPFHVLRI 99
P +LR+
Sbjct: 406 QLPCPAELLRL 416
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
taurus) [TaxId: 9913]}
Length = 527
Score = 24.7 bits (53), Expect = 9.8
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 5/89 (5%)
Query: 37 GMKKKGVDEFPFCVHLV----SWEKENVSSEALEAARIACNKYMAKFAGKDAFHL-RVRV 91
G+ K V C HL+ EK+ ++ + G + +
Sbjct: 86 GLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGII 145
Query: 92 HPFHVLRINKMLSCAGADRLQTGMRGAFG 120
H + T G G
Sbjct: 146 HQIILENYAYPGVLLIGTDSHTPNGGGLG 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.436
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 856,043
Number of extensions: 38838
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 10
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.1 bits)