Query 027698
Match_columns 220
No_of_seqs 117 out of 419
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 13:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02838 3-hydroxyacyl-CoA deh 100.0 2.3E-76 5E-81 507.4 15.7 213 1-214 1-218 (221)
2 KOG3187 Protein tyrosine phosp 100.0 1.4E-67 3E-72 449.9 14.8 214 6-219 7-223 (223)
3 PF04387 PTPLA: Protein tyrosi 100.0 1.7E-64 3.7E-69 417.4 9.7 161 55-215 1-164 (164)
4 COG5198 Ptpl Protein tyrosine 100.0 3.5E-52 7.6E-57 340.7 14.1 197 5-214 3-200 (209)
5 PF01151 ELO: GNS1/SUR4 family 78.3 45 0.00098 29.0 14.6 134 1-139 27-180 (250)
6 PTZ00251 fatty acid elongase; 72.9 26 0.00056 31.4 8.6 135 2-140 51-201 (272)
7 PF07297 DPM2: Dolichol phosph 64.5 6 0.00013 29.0 2.3 49 160-210 27-77 (78)
8 PF11044 TMEMspv1-c74-12: Plec 37.7 34 0.00073 22.6 2.3 6 206-211 27-32 (49)
9 COG3114 CcmD Heme exporter pro 29.7 98 0.0021 22.0 3.7 18 195-212 29-46 (67)
10 PF14333 DUF4389: Domain of un 24.3 2.6E+02 0.0057 20.1 5.4 41 10-50 14-54 (80)
11 PRK13454 F0F1 ATP synthase sub 23.2 1.1E+02 0.0024 25.4 3.7 40 173-212 21-68 (181)
12 PF12669 P12: Virus attachment 22.4 92 0.002 21.3 2.5 18 193-210 10-27 (58)
13 KOG3071 Fatty acyl-CoA elongas 21.3 6.1E+02 0.013 22.8 10.1 135 1-139 51-202 (274)
No 1
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=2.3e-76 Score=507.41 Aligned_cols=213 Identities=30% Similarity=0.537 Sum_probs=197.7
Q ss_pred CCCC-CCchhHHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHHHHHHHHHHHHHhhhhhcccccCcccchhh
Q 027698 1 MAHQ-RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFM 79 (220)
Q Consensus 1 ~~~~-~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~l~~~Q~~a~lEi~H~~~GlvrS~~~tt~~ 79 (220)
||.| .+++|.||++||++|++||++||++++.++...|+ .+.|+++++.++++|++|++||+|+++|+||||+.||++
T Consensus 1 ~~~~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~ 79 (221)
T PLN02838 1 MAGFGSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLP 79 (221)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHH
Confidence 4444 34789999999999999999999999999988774 446999999999999999999999999999999999999
Q ss_pred hhccceeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHh-hcCCCCchhhhhhhccccccccchhhHHHHHHH
Q 027698 80 QWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALN-TIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLN 158 (220)
Q Consensus 80 QV~sR~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~-l~~~~p~~L~WLRYt~FivLYPiGv~~E~~~i~ 158 (220)
||+||++++|||++..||+++++.++.|++|||++|+||||||+++ +.|.+|++|+|||||+|+||||+|+.||+.++|
T Consensus 80 QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~ 159 (221)
T PLN02838 80 QIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIY 159 (221)
T ss_pred HHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 459999999999999999999999999999999
Q ss_pred HhcchhhhhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccch
Q 027698 159 QAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKR 214 (220)
Q Consensus 159 ~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~ 214 (220)
+|+|++++++.|+.+|| |++|++.+++++++++|+||+|+||+||++||||+++|+
T Consensus 160 ~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~k 218 (221)
T PLN02838 160 IALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKS 218 (221)
T ss_pred HhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999 555556667888999999999999999999999999754
No 2
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1.4e-67 Score=449.91 Aligned_cols=214 Identities=35% Similarity=0.609 Sum_probs=204.2
Q ss_pred CchhHHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHHHHHHHHHHHHHhhhhhcccccCcccchhhhhccce
Q 027698 6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT 85 (220)
Q Consensus 6 ~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~l~~~Q~~a~lEi~H~~~GlvrS~~~tt~~QV~sR~ 85 (220)
.+++.||++||++|++||.+++..+......+|+.+++|+++++.++++|++|++|++|+.+|+|+|++.+|++||.||+
T Consensus 7 ~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl 86 (223)
T KOG3187|consen 7 MLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRL 86 (223)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccc
Confidence 46799999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred eeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhccccccccchhhHHHHHHHHhcchhh
Q 027698 86 LFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYMK 165 (220)
Q Consensus 86 ~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~WLRYt~FivLYPiGv~~E~~~i~~alp~~~ 165 (220)
+++|++++..|+++.++.+..++++|+++|++||+||++++.|..|++++|||||+|++|||+|++||+.++++|+|+.+
T Consensus 87 ~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~~al~~~~ 166 (223)
T KOG3187|consen 87 FILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLYAALPAAG 166 (223)
T ss_pred eehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccchhhhhc
Q 027698 166 EKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 219 (220)
Q Consensus 166 ~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~~~k~k 219 (220)
+++.|+++|| |++||+.+|+++++++|+||+|++|+||.+||||.++++++|||
T Consensus 167 ~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~~~ 223 (223)
T KOG3187|consen 167 ETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKKKK 223 (223)
T ss_pred ccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhcccccccCC
Confidence 9999999999 66667777888889999999999999999999999987766653
No 3
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=1.7e-64 Score=417.36 Aligned_cols=161 Identities=44% Similarity=0.802 Sum_probs=156.5
Q ss_pred HHHHHHHhhhhhcccccCcccchhhhhccceeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchh
Q 027698 55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWL 134 (220)
Q Consensus 55 Q~~a~lEi~H~~~GlvrS~~~tt~~QV~sR~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L 134 (220)
|++|++||+|+++|+||||+.||++||+||++++|++++..||++++++++.|++|||++|+||||||+++++|.+|++|
T Consensus 1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L 80 (164)
T PF04387_consen 1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWL 80 (164)
T ss_pred CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccchhhHHHHHHHHhcchhhhhcccccccC---CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccc
Q 027698 135 TYLRYTMFIPLYPIGVLGEMLLLNQAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKL 211 (220)
Q Consensus 135 ~WLRYt~FivLYPiGv~~E~~~i~~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~l 211 (220)
+|||||+|+||||+|++||+.++++|+|++++++.|+.+|| |++|++++++.+++++|+||+|+||+||++||||++
T Consensus 81 ~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l 160 (164)
T PF04387_consen 81 TWLRYSAFIVLYPLGILSELLLIYRALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKL 160 (164)
T ss_pred HHHHHhhHhhccchHHHHHHHHHHHhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 667788888999999999999999999999999999
Q ss_pred cchh
Q 027698 212 GKRQ 215 (220)
Q Consensus 212 ~~~~ 215 (220)
+|+|
T Consensus 161 ~~~~ 164 (164)
T PF04387_consen 161 GKKK 164 (164)
T ss_pred ccCC
Confidence 8764
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=3.5e-52 Score=340.74 Aligned_cols=197 Identities=27% Similarity=0.412 Sum_probs=172.3
Q ss_pred CCchhHHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHHHHHHHHHHHHHhhhhhcccccCcccchhhhhccc
Q 027698 5 RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR 84 (220)
Q Consensus 5 ~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~l~~~Q~~a~lEi~H~~~GlvrS~~~tt~~QV~sR 84 (220)
+.++-.||-+||.++|.+|.+++.+....+...++.+ .+++..+...++|++|++|+.|+.+|.|+|++.||.+||.||
T Consensus 3 k~l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SR 81 (209)
T COG5198 3 KALPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISR 81 (209)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHH
Confidence 3455689999999999999999998888777777777 488899999999999999999999999999999999999999
Q ss_pred eeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhhccccccccchhhHHHHHHHHhcchh
Q 027698 85 TLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPYM 164 (220)
Q Consensus 85 ~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~WLRYt~FivLYPiGv~~E~~~i~~alp~~ 164 (220)
++++|||+.+.-.+-++|.++.+.+|||++|++||.||++++-| .|..|+|||||+|.+|||+|+.+|+.|++.+.--.
T Consensus 82 l~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~~~~naa 160 (209)
T COG5198 82 LFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNAA 160 (209)
T ss_pred HHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 99999999665554458999999999999999999999999855 79999999999999999999999999998876543
Q ss_pred hhhcccccccCCccchHH-HHHHHHHHHhhhhHHHHHHHHHHHHcccccch
Q 027698 165 KEKNIFANFFAGLPFSYY-NVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKR 214 (220)
Q Consensus 165 ~~~~~~s~~mP~~~f~~~-~~~~~~l~~yipg~~~ly~hM~~QRkK~l~~~ 214 (220)
+. .| ++. -.+.+++++|+|||++||+||++||||..+.+
T Consensus 161 ~~--~~---------Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K~~ 200 (209)
T COG5198 161 GK--IF---------SLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKVK 200 (209)
T ss_pred HH--HH---------HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 33 22 223 23567889999999999999999999998533
No 5
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=78.35 E-value=45 Score=29.04 Aligned_cols=134 Identities=15% Similarity=0.233 Sum_probs=78.2
Q ss_pred CCCCCCc-hhHHHhHHhHHHHHHHHHHHHHHHHHHHc----cCC----c------ccch--hchhHHHHHHHHHHHHHhh
Q 027698 1 MAHQRQP-IKLYLFGYNSLQAAGWIVAIFMLLSNLLS----TKS----I------AGTF--ASAGEIIWILQTAAFLEVV 63 (220)
Q Consensus 1 ~~~~~~l-~~~YL~~YN~~~~~gW~~il~~~~~~~~~----~g~----~------~~~y--~~~~~~l~~~Q~~a~lEi~ 63 (220)
|++.++. -+.-+.+||+++++.=++....++..... .|- . .+.+ +.++....++=.-=+.|.+
T Consensus 27 m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~Ell 106 (250)
T PF01151_consen 27 MKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELL 106 (250)
T ss_pred HhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 3333333 36789999999998887777777733211 110 1 1111 1222223233344478888
Q ss_pred hhhcccccCcccchhhhhccceeee---eeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhhhhhh
Q 027698 64 HGAVGILPSGVWLPFMQWCGRTLFF---LVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRY 139 (220)
Q Consensus 64 H~~~GlvrS~~~tt~~QV~sR~~vv---w~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~WLRY 139 (220)
-..+=+.|-+ ..+++||.==..++ |......|. .......+.=+..-++-|.||++..+|.......|=||
T Consensus 107 DTvflvLrkK-~lsfLHvYHH~~~~~~~w~~~~~~~~----~~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~k~~ 180 (250)
T PF01151_consen 107 DTVFLVLRKK-QLSFLHVYHHASTLLYCWISYKYGPG----GQIWFIAALNSFVHVIMYSYYFLSALGIRKVPRWWKKY 180 (250)
T ss_pred HHHHHHHhCC-CcchhHHhhhhhhhhhhhheeeeccc----cchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 8888888888 88899987444444 433333222 12223334557799999999999988865332444444
No 6
>PTZ00251 fatty acid elongase; Provisional
Probab=72.87 E-value=26 Score=31.35 Aligned_cols=135 Identities=15% Similarity=0.158 Sum_probs=77.9
Q ss_pred CCCCCch--hHHHhHHhHHHHHHHHHHHHHHHH----HHHccCC-------cccc-h-hchhHHHHHHHHHHHHHhhhhh
Q 027698 2 AHQRQPI--KLYLFGYNSLQAAGWIVAIFMLLS----NLLSTKS-------IAGT-F-ASAGEIIWILQTAAFLEVVHGA 66 (220)
Q Consensus 2 ~~~~~l~--~~YL~~YN~~~~~gW~~il~~~~~----~~~~~g~-------~~~~-y-~~~~~~l~~~Q~~a~lEi~H~~ 66 (220)
++.++.. |.-+.+||++|++.=++.....+. .....|- ..+. + ...+....++=.-=+.|.+-..
T Consensus 51 ~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTv 130 (272)
T PTZ00251 51 HGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTF 130 (272)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4566666 789999999999888777777753 2222221 0111 1 1223333333344477888888
Q ss_pred cccccCcccchhhhhccceeeeeeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhh-hhhhc
Q 027698 67 VGILPSGVWLPFMQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLT-YLRYT 140 (220)
Q Consensus 67 ~GlvrS~~~tt~~QV~sR~~vvw~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~-WLRYt 140 (220)
+=+.|-+ ..++++|.==..+++....... +...........=+.+-++=|.||.+..+|..+. .. |.||-
T Consensus 131 F~VLRKK-qvsFLHvYHH~~~~~~~w~~~~--~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~-~~~~kk~I 201 (272)
T PTZ00251 131 FLIMGGK-KLPFLSWFHHVTIFLYAWMSYQ--QGSSIWICAAAMNYFVHSIMYFYFALSEAGFKKL-VKPFAMYI 201 (272)
T ss_pred hhhhcCC-CchHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-hhHHHHHH
Confidence 7777777 7778887644433322111221 1122222224445679999999999988886522 22 66653
No 7
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=64.53 E-value=6 Score=29.03 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=26.8
Q ss_pred hcchhhhhcc-cccccC-CccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccc
Q 027698 160 AFPYMKEKNI-FANFFA-GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSK 210 (220)
Q Consensus 160 alp~~~~~~~-~s~~mP-~~~f~~~~~~~~~l~~yipg~~~ly~hM~~QRkK~ 210 (220)
-+|++++++. ++...| .+++..+-++...... ..|. ++-..|+|++||+
T Consensus 27 llPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~-~vg~-f~g~vmik~~~kk 77 (78)
T PF07297_consen 27 LLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLS-GVGT-FLGYVMIKSKKKK 77 (78)
T ss_pred HhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHH-HHHH-HHHHHHhhccccc
Confidence 3567777643 445556 6666666554333332 2233 4455888887753
No 8
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=37.72 E-value=34 Score=22.58 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.6
Q ss_pred HHcccc
Q 027698 206 QRGSKL 211 (220)
Q Consensus 206 QRkK~l 211 (220)
|.=|..
T Consensus 27 QkikqI 32 (49)
T PF11044_consen 27 QKIKQI 32 (49)
T ss_pred HHHHHH
Confidence 444444
No 9
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=29.71 E-value=98 Score=22.00 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHccccc
Q 027698 195 AWIKLYSHMLKQRGSKLG 212 (220)
Q Consensus 195 g~~~ly~hM~~QRkK~l~ 212 (220)
....+-.|-.+|||+.|+
T Consensus 29 ~l~~l~v~sv~qrr~iL~ 46 (67)
T COG3114 29 PLAVLVVHSVLQRRAILR 46 (67)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677899999999993
No 10
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=24.28 E-value=2.6e+02 Score=20.10 Aligned_cols=41 Identities=5% Similarity=0.035 Sum_probs=30.0
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHccCCcccchhchhHH
Q 027698 10 LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEI 50 (220)
Q Consensus 10 ~YL~~YN~~~~~gW~~il~~~~~~~~~~g~~~~~y~~~~~~ 50 (220)
.+.++++.++++.|..++...+..+..+.......+.....
T Consensus 14 ~~~ivl~~~~~~~~~~~~~q~~~~L~tg~~p~~L~~f~~~l 54 (80)
T PF14333_consen 14 PFAIVLSLASIVLGVLVLIQWFAILFTGRYPEPLFDFGAGL 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHH
Confidence 36778899999999999999998888865555444444333
No 11
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.16 E-value=1.1e+02 Score=25.38 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=22.6
Q ss_pred ccCCccch-----HHHHHHHHHHHhhhhHHH---HHHHHHHHHccccc
Q 027698 173 FFAGLPFS-----YYNVVQVVFVMYPFAWIK---LYSHMLKQRGSKLG 212 (220)
Q Consensus 173 ~mP~~~f~-----~~~~~~~~l~~yipg~~~---ly~hM~~QRkK~l~ 212 (220)
.||.++++ +-++++.++++|+....+ =...++.+|++...
T Consensus 21 gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~ 68 (181)
T PRK13454 21 GMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTIT 68 (181)
T ss_pred CCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47744443 223444455555544332 35688999998883
No 12
>PF12669 P12: Virus attachment protein p12 family
Probab=22.45 E-value=92 Score=21.28 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHccc
Q 027698 193 PFAWIKLYSHMLKQRGSK 210 (220)
Q Consensus 193 ipg~~~ly~hM~~QRkK~ 210 (220)
...++.+..+++|++|+-
T Consensus 10 ~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 10 AAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 334455778999998873
No 13
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=21.35 E-value=6.1e+02 Score=22.85 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=75.3
Q ss_pred CCCCCCch-hHHHhHHhHHHHHHHHHHHHHHHHHHHccCC-------cc-cchhchhHHHHHHHHH---HHHHhhhhhcc
Q 027698 1 MAHQRQPI-KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKS-------IA-GTFASAGEIIWILQTA---AFLEVVHGAVG 68 (220)
Q Consensus 1 ~~~~~~l~-~~YL~~YN~~~~~gW~~il~~~~~~~~~~g~-------~~-~~y~~~~~~l~~~Q~~---a~lEi~H~~~G 68 (220)
|++.++++ +.=+.+||+.|.+.=+.++..........+. .. ...+.-+....+++.. =++|.+-..+=
T Consensus 51 m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFf 130 (274)
T KOG3071|consen 51 MRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFF 130 (274)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheee
Confidence 44444444 6778899999887666644444433333321 00 1123333444444432 36777777766
Q ss_pred cccC-cccchhhhhccceeee---eeEeeccccccCcchHHHHHHHHHhhhhhchhHHHHhhcCCCCchhh-hhhh
Q 027698 69 ILPS-GVWLPFMQWCGRTLFF---LVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLT-YLRY 139 (220)
Q Consensus 69 lvrS-~~~tt~~QV~sR~~vv---w~v~~~~p~~~~~~~~~~l~~aWs~~EviRY~yY~~~l~~~~p~~L~-WLRY 139 (220)
+.|. .=-.|++||.==..++ |.-....|..+ ++ ...+-=+..-+|=|.||..+..|....+-. |-.|
T Consensus 131 VLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~-~~---~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky 202 (274)
T KOG3071|consen 131 VLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGH-GF---FAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKY 202 (274)
T ss_pred EEEccCCceEEEEEEecchHHHhhhheeEEeCCce-ee---eeeehhhhHHHHHHHHHHHHhhCcCccccchHHHH
Confidence 6665 3447788887444444 43333444211 11 122223567899999999999988776655 5554
Done!