Query 027698
Match_columns 220
No_of_seqs 117 out of 419
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 14.2 27 0.00092 19.6 -0.6 14 201-214 7-20 (26)
2 2a1i_A DNA excision repair pro 11.0 13 0.00044 29.3 -3.6 17 105-121 113-129 (146)
3 4b19_A PEPA1; toxin, toxin apo 9.5 1.6E+02 0.0053 16.9 1.6 14 197-210 17-30 (30)
4 3fap_B FRAP, FKBP12-rapamycin 5.6 2.1E+02 0.0073 20.4 1.2 32 55-86 28-60 (94)
5 3im4_C Dual specificity A kina 4.8 2.6E+02 0.0089 17.4 1.0 9 109-117 17-25 (45)
6 2rdd_B UPF0092 membrane protei 4.2 5E+02 0.017 14.9 2.0 6 200-205 17-22 (37)
7 1s99_A YKOF; thiamin-binding p 4.1 2.9E+02 0.01 22.5 1.2 30 143-172 119-148 (200)
8 2db7_A Hairy/enhancer-OF-split 3.9 2.5E+02 0.0085 18.6 0.5 14 107-120 22-35 (64)
9 2e2f_A Diapausin; Ca-channel b 3.7 2.4E+02 0.0083 17.0 0.2 7 79-85 8-14 (41)
10 3h8k_B Autocrine motility fact 3.6 3E+02 0.01 15.4 0.5 9 203-211 9-17 (28)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=14.24 E-value=27 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.1
Q ss_pred HHHHHHHcccccch
Q 027698 201 SHMLKQRGSKLGKR 214 (220)
Q Consensus 201 ~hM~~QRkK~l~~~ 214 (220)
-+|++.|||++..+
T Consensus 7 Ydml~~RKkKi~~~ 20 (26)
T 2kpa_A 7 YEMLAARKKRISVK 20 (26)
T ss_dssp HHHHTCTHHHHHCH
T ss_pred HHHHHHHHHHhccc
Confidence 38999999998544
No 2
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=11.02 E-value=13 Score=29.32 Aligned_cols=17 Identities=35% Similarity=0.383 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhchhH
Q 027698 105 FITFLAWCLIEVIRYPF 121 (220)
Q Consensus 105 ~~l~~aWs~~EviRY~y 121 (220)
.++++|||.-|.-||-=
T Consensus 113 ~TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLE 129 (146)
T ss_dssp CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHH
Confidence 56789999999999964
No 3
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=9.46 E-value=1.6e+02 Score=16.94 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHccc
Q 027698 197 IKLYSHMLKQRGSK 210 (220)
Q Consensus 197 ~~ly~hM~~QRkK~ 210 (220)
.-+|+|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 46789999998764
No 4
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=5.57 E-value=2.1e+02 Score=20.36 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhcccccCccc-chhhhhcccee
Q 027698 55 QTAAFLEVVHGAVGILPSGVW-LPFMQWCGRTL 86 (220)
Q Consensus 55 Q~~a~lEi~H~~~GlvrS~~~-tt~~QV~sR~~ 86 (220)
..+++||-+|..+.--+.... +.|.|.+||-.
T Consensus 28 ~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L 60 (94)
T 3fap_B 28 GMFEVLEPLHAMMERGPQTLKETSFNQAYGRDL 60 (94)
T ss_dssp HHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 456889999999854233222 78889888864
No 5
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=4.84 E-value=2.6e+02 Score=17.37 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.7
Q ss_pred HHHHhhhhh
Q 027698 109 LAWCLIEVI 117 (220)
Q Consensus 109 ~aWs~~Evi 117 (220)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 478888776
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=4.21 E-value=5e+02 Score=14.92 Aligned_cols=6 Identities=33% Similarity=0.716 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027698 200 YSHMLK 205 (220)
Q Consensus 200 y~hM~~ 205 (220)
|-=|.|
T Consensus 17 YFl~iR 22 (37)
T 2rdd_B 17 YFMILR 22 (37)
T ss_dssp HHHTHH
T ss_pred HHHHhh
Confidence 333444
No 7
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=4.14 E-value=2.9e+02 Score=22.46 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.9
Q ss_pred cccccchhhHHHHHHHHhcchhhhhccccc
Q 027698 143 IPLYPIGVLGEMLLLNQAFPYMKEKNIFAN 172 (220)
Q Consensus 143 ivLYPiGv~~E~~~i~~alp~~~~~~~~s~ 172 (220)
+-|||+|---=|-.|+..+...++.+.|.-
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~~ 148 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFVQ 148 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHcCcccC
Confidence 348999998888889999988888765533
No 8
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=3.94 E-value=2.5e+02 Score=18.62 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhchh
Q 027698 107 TFLAWCLIEVIRYP 120 (220)
Q Consensus 107 l~~aWs~~EviRY~ 120 (220)
.-..=|+.||.||.
T Consensus 22 ~Gf~eC~~EV~rfL 35 (64)
T 2db7_A 22 LGFRECLAEVARYL 35 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 35566889999974
No 9
>2e2f_A Diapausin; Ca-channel blocker, antifungal peptide, structural genomics, antifungal protein; NMR {Gastrophysa atrocyanea}
Probab=3.67 E-value=2.4e+02 Score=17.01 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=4.5
Q ss_pred hhhccce
Q 027698 79 MQWCGRT 85 (220)
Q Consensus 79 ~QV~sR~ 85 (220)
=||+||+
T Consensus 8 dqvcsri 14 (41)
T 2e2f_A 8 DQVCPRI 14 (41)
T ss_dssp HHSTTSC
T ss_pred hhcccCc
Confidence 3777775
No 10
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=3.57 E-value=3e+02 Score=15.39 Aligned_cols=9 Identities=56% Similarity=0.689 Sum_probs=5.8
Q ss_pred HHHHHcccc
Q 027698 203 MLKQRGSKL 211 (220)
Q Consensus 203 M~~QRkK~l 211 (220)
|+.+||..+
T Consensus 9 ~Lq~Rk~~m 17 (28)
T 3h8k_B 9 MLVQRKDEL 17 (28)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566676665
Done!