Query 027698
Match_columns 220
No_of_seqs 117 out of 419
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 23:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027698.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027698hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k1va_ a.37.1.1 (A:) Mafg {Mo 14.2 21 0.0016 20.6 0.4 11 204-214 29-39 (41)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 10.4 72 0.0052 16.2 1.7 16 102-117 6-21 (27)
3 d2a1ia1 c.52.1.20 (A:99-227) D 10.3 6.4 0.00047 28.6 -3.6 25 105-130 96-120 (129)
4 d1s99a_ d.58.48.2 (A:) Putativ 9.5 48 0.0035 25.1 1.2 29 142-170 110-138 (189)
5 d2db7a1 a.273.1.1 (A:3-57) Hai 7.2 55 0.004 19.9 0.5 13 107-119 15-27 (55)
6 d2dlqa4 g.37.1.1 (A:8-34) GLI- 5.9 1.4E+02 0.01 15.0 1.6 16 2-17 6-21 (27)
7 d1rqja_ a.128.1.1 (A:) Farnesy 3.7 2.2E+02 0.016 21.8 2.1 16 52-67 65-80 (299)
8 d1fpsa_ a.128.1.1 (A:) Farnesy 3.5 6.4E+02 0.046 19.2 5.1 17 52-68 79-95 (348)
9 d1hy7a_ d.92.1.11 (A:) Stromel 3.3 3.1E+02 0.023 18.1 2.5 23 54-77 113-135 (168)
10 d1v4ea_ a.128.1.1 (A:) Octopre 3.3 2.5E+02 0.019 21.2 2.1 18 52-69 54-71 (280)
No 1
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.20 E-value=21 Score=20.56 Aligned_cols=11 Identities=55% Similarity=0.664 Sum_probs=7.6
Q ss_pred HHHHcccccch
Q 027698 204 LKQRGSKLGKR 214 (220)
Q Consensus 204 ~~QRkK~l~~~ 214 (220)
+||||+.|+.|
T Consensus 29 lKqrRRTLKNR 39 (41)
T d1k1va_ 29 LKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhhhcC
Confidence 67888777543
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.41 E-value=72 Score=16.18 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.0
Q ss_pred chHHHHHHHHHhhhhh
Q 027698 102 PSLFITFLAWCLIEVI 117 (220)
Q Consensus 102 ~~~~~l~~aWs~~Evi 117 (220)
|...+.++.||++-++
T Consensus 6 wv~llvvftwsiamvv 21 (27)
T d2e74h1 6 WVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeEE
Confidence 3445678899987654
No 3
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.28 E-value=6.4 Score=28.55 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhchhHHHHhhcCCC
Q 027698 105 FITFLAWCLIEVIRYPFYALNTIGAC 130 (220)
Q Consensus 105 ~~l~~aWs~~EviRY~yY~~~l~~~~ 130 (220)
.++++|||.-|..||-= .++.....
T Consensus 96 ~TLilaws~eEaa~YlE-~~k~~e~~ 120 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYLE-TYKAYEQK 120 (129)
T ss_dssp CEEEEESSHHHHHHHHH-HHHTCCSS
T ss_pred CEEEEEcCHHHHHHHHH-HHHHhcCC
Confidence 56789999999999953 33444433
No 4
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=9.53 E-value=48 Score=25.14 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.9
Q ss_pred ccccccchhhHHHHHHHHhcchhhhhccc
Q 027698 142 FIPLYPIGVLGEMLLLNQAFPYMKEKNIF 170 (220)
Q Consensus 142 FivLYPiGv~~E~~~i~~alp~~~~~~~~ 170 (220)
=+-|||+|.-=-|--||..+.+.|+.+.|
T Consensus 110 qfsLYpmg~~d~m~~Iy~~id~~k~~G~~ 138 (189)
T d1s99a_ 110 QFALYPMNEPDYMGLIMEAVDIAKAQGTF 138 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHHTTCE
T ss_pred eEEEEecCCccHHHHHHHHHHHHHHcCCC
Confidence 34599999988889999999999887654
No 5
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.21 E-value=55 Score=19.89 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=10.4
Q ss_pred HHHHHHhhhhhch
Q 027698 107 TFLAWCLIEVIRY 119 (220)
Q Consensus 107 l~~aWs~~EviRY 119 (220)
+-+.=|.+||.||
T Consensus 15 ~GF~ECa~EV~Ry 27 (55)
T d2db7a1 15 LGFRECLAEVARY 27 (55)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4566789999997
No 6
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.87 E-value=1.4e+02 Score=15.03 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=12.4
Q ss_pred CCCCCchhHHHhHHhH
Q 027698 2 AHQRQPIKLYLFGYNS 17 (220)
Q Consensus 2 ~~~~~l~~~YL~~YN~ 17 (220)
.|+.-+++-||-.-|-
T Consensus 6 c~k~f~skyylkvhnr 21 (27)
T d2dlqa4 6 CHKKFLSKYYLKVHNR 21 (27)
T ss_dssp TCCCCSSHHHHHHHHH
T ss_pred hHHHHHHhHhhhhccc
Confidence 4777888999988773
No 7
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=3.66 E-value=2.2e+02 Score=21.80 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhhhc
Q 027698 52 WILQTAAFLEVVHGAV 67 (220)
Q Consensus 52 ~~~Q~~a~lEi~H~~~ 67 (220)
...+.++.+|.+|++.
T Consensus 65 ~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYS 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567889999999886
No 8
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.52 E-value=6.4e+02 Score=19.25 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhhcc
Q 027698 52 WILQTAAFLEVVHGAVG 68 (220)
Q Consensus 52 ~~~Q~~a~lEi~H~~~G 68 (220)
...+.++++|.+|++.=
T Consensus 79 ~~~~~A~avEliH~asL 95 (348)
T d1fpsa_ 79 CALAVGWCIELFQAFFL 95 (348)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678899999999973
No 9
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=3.32 E-value=3.1e+02 Score=18.08 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhhcccccCcccch
Q 027698 54 LQTAAFLEVVHGAVGILPSGVWLP 77 (220)
Q Consensus 54 ~Q~~a~lEi~H~~~GlvrS~~~tt 77 (220)
.+..++=|+.|++ ||--++---+
T Consensus 113 ~~~v~~HEiGHAL-GL~H~~~~~s 135 (168)
T d1hy7a_ 113 LFLVAAHEIGHSL-GLFHSANTEA 135 (168)
T ss_dssp HHHHHHHHHHHHH-TBCCCSCTTS
T ss_pred ceeeeHhhhcccc-CCCcCCCCCc
Confidence 4678889999986 8876654433
No 10
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=3.27 E-value=2.5e+02 Score=21.25 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhhhccc
Q 027698 52 WILQTAAFLEVVHGAVGI 69 (220)
Q Consensus 52 ~~~Q~~a~lEi~H~~~Gl 69 (220)
.....++.+|.+|++.=+
T Consensus 54 ~~~~~AaaiEliH~asLI 71 (280)
T d1v4ea_ 54 DAISSLAALELVHLASLL 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677889999998743
Done!