BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027699
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 145/258 (56%), Gaps = 41/258 (15%)
Query: 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHA 60
MK+ +P L DNY YL+I++ TKEAA+VDPV+P+K+++AA++ WDHA
Sbjct: 1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHA 60
Query: 61 GGNEKMKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYY 120
GGNEK+ ++ G+KVYGG D + TH++ + +G+ +NV L TPCHT GHI Y+
Sbjct: 61 GGNEKLVKLESGLKVYGGD-DRIGALTHKITHLSTLQVGS-LNVKCLATPCHTSGHICYF 118
Query: 121 VTGKEG-EDPAVFTGDTL--------------------------------------YTVK 141
V+ G E PAVFTGDTL YT+
Sbjct: 119 VSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTIN 178
Query: 142 NLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVDLPELQKLVGF 201
NL FA VEP N +++KLAWA+ + G PT+PST+ EE NPFMRV +Q+ G
Sbjct: 179 NLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGE 238
Query: 202 NDPIEALREIRKRKDNWR 219
DP+ +R +R+ KD ++
Sbjct: 239 TDPVTTMRAVRREKDQFK 256
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 125/260 (48%), Gaps = 48/260 (18%)
Query: 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHA 60
M+I +PCL+DNYAY++ +E T VVDP E E II++ K+ +DH
Sbjct: 1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHT 60
Query: 61 GGNEKMKEMVPGIKVYGGSL--DNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHIS 118
GGN ++K+ G KV G ++ D + G +++GDK+ H V + TP HTKGHIS
Sbjct: 61 GGNLELKDRY-GAKVIGSAMDKDRIPGIDMALKDGDKWMFAGH-EVHVMDTPGHTKGHIS 118
Query: 119 YYVTGKEGEDPAVFTGDTL-------------------------------------YTVK 141
Y G A+FTGDT+ YT+
Sbjct: 119 LYFPGSR----AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLS 174
Query: 142 NLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMR---VDLPELQKL 198
N FAL++EP+N LQ A R LPTIP+T++ E NPF+R D+ ++
Sbjct: 175 NSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRI 234
Query: 199 VGFNDPIEALREIRKRKDNW 218
D EAL IRK KD++
Sbjct: 235 PEAADEAEALGIIRKAKDDF 254
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 103/261 (39%), Gaps = 75/261 (28%)
Query: 6 IPCLEDNYAYLIIEETTKEAAVVDPVEPEKII-----EAAKQX-----XXXXXXXXXXXX 55
+P L+DN++YLI + TT A VD K I E KQ
Sbjct: 34 VPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHK 93
Query: 56 XWDHAGGNEKMK-------EMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLH 108
WDH+GGN K+K VP + V GG+ D++ T V GD+ +G ++V +
Sbjct: 94 HWDHSGGNAKLKAELEAMNSTVP-VVVVGGANDSIPAVTKPVREGDRVQVG-DLSVEVID 151
Query: 109 TPCHTKGHISYYVTGKE--GEDPAVFTGDTL----------------------------- 137
PCHT+GH+ Y V + + A+FTGDT+
Sbjct: 152 APCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKG 211
Query: 138 ----------------YTVKNLLFALTVEPSNVKLQQKLAWAQNQR-------QAGLPTI 174
YT + F+ P + LA+ Q QR + G P++
Sbjct: 212 NDYALDKVTFIFPGHEYTSGFMTFSEKTFPD--RASDDLAFIQAQRAKYAAAVKTGDPSV 269
Query: 175 PSTIEEELETNPFMRVDLPEL 195
PS++ EE N F+RV P
Sbjct: 270 PSSLAEEKRQNLFLRVADPAF 290
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 49/259 (18%)
Query: 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHA 60
M + IP +DNY +++ + + +VDP E +++A + DH
Sbjct: 8 MNLNSIPAFQDNYIWVLTNDEGR-CVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHV 66
Query: 61 GGNEKMKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYY 120
GG +++ + P + VYG + KG TH V +GD + L TP HT GH+ Y+
Sbjct: 67 GGVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTL-FATPGHTLGHVCYF 125
Query: 121 VTGKEGEDPAVFTGDTL-------------------------------------YTVKNL 143
P +F GDTL YT+ N+
Sbjct: 126 ------SRPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLICCAHEYTLANI 179
Query: 144 LFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVD----LPELQKLV 199
FAL++ P + + + + R T+P ++ E + N F+R + + E+ K
Sbjct: 180 KFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKET 239
Query: 200 GFNDPIEALREIRKRKDNW 218
P +R +KD +
Sbjct: 240 ILQQPEARFAWLRSKKDTF 258
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 14 AYLIIEETTKEAAVVDPV-EPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKMK-EMVP 71
+YLI + T EA ++DP+ + I A + D A G + ++
Sbjct: 39 SYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNA 98
Query: 72 GIKVYGGSLD-----NVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVT--GK 124
I V G S D N+ TH V++ D +G ++ + LHTP HT IS+ +T G
Sbjct: 99 NIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVG-NIKLKVLHTPGHTPESISFLLTDEGA 157
Query: 125 EGEDP-AVFTGDTLY 138
+ P +F+GD ++
Sbjct: 158 GAQVPMGLFSGDFIF 172
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 83 VKGCTHQV-ENGDKFSIGAHVNVLSLHTPCHTKGHISYYV-TGKEGED--PAVFTGDTLY 138
VK H++ ++GD+ G +V ++ HTP HT H+SY + GK D A+F+GD ++
Sbjct: 94 VKAYPHRLLKDGDELHFG-NVRIVVXHTPGHTPEHVSYLLYDGKTSPDVPXALFSGDFVF 152
Query: 139 T 139
Sbjct: 153 V 153
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 33/159 (20%)
Query: 1 MKIFHIPC--LEDNYAYLIIEETTKEAAVVDPV-EPEKIIEAAKQXXXXXXXXXXXXXXW 57
M++F + L++N AYL+ ET + ++DP EPEK++ + +
Sbjct: 1 MRVFPVTLGPLQEN-AYLV--ETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHF 57
Query: 58 DHAGGNEKMKEMVP------------------GIKVYGGSLDNVKGCTHQVENGDKFSIG 99
DH G + E + + +G ++ +E G + G
Sbjct: 58 DHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRL-FG 116
Query: 100 AHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLY 138
V LH P H+ GH+++Y + E VF+GD L+
Sbjct: 117 FQV----LHLPGHSPGHVAFY----DPEGAQVFSGDLLF 147
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 27/144 (18%)
Query: 16 LIIEETTKEAAVVDPV-EPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKMKEMVPGIK 74
LI E T+ AA+VDP + EKI + DH G ++ + G+
Sbjct: 17 LIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHY-GVP 75
Query: 75 VYGG------------------SLDNVKGCT--HQVENGDKFSIGAHVNVLSLHTPCHTK 114
V G LD + T + +GD+ S+G +V + LH P HT
Sbjct: 76 VIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVG-NVTLQVLHCPGHTP 134
Query: 115 GHISYYVTGKEGEDPAVFTGDTLY 138
GH+ ++ + + + +GD ++
Sbjct: 135 GHVVFF----DEQSQLLISGDVIF 154
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 90 VENGDKFSIGAHVNVLSLHTPCHTKGHISYYVT----GKEGEDPAVFTGDTLY 138
+++GD ++GA +++ ++HTP HT ++Y VT + D A F GDTL+
Sbjct: 126 LDDGDTLALGA-LSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLF 177
>pdb|1WTD|A Chain A, Crystal Structure Of Type Ii Restrcition Endonuclease,
Ecoo109i Dna- Free Form
pdb|1WTD|B Chain B, Crystal Structure Of Type Ii Restrcition Endonuclease,
Ecoo109i Dna- Free Form
pdb|1WTE|A Chain A, Crystal Structure Of Type Ii Restrcition Endonuclease,
Ecoo109i Complexed With Cognate Dna
pdb|1WTE|B Chain B, Crystal Structure Of Type Ii Restrcition Endonuclease,
Ecoo109i Complexed With Cognate Dna
Length = 272
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 154 VKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVDLPELQKLVGFNDPIEAL 208
+K+Q+ AW +RQ+ L + S E + NPFM + + L F++ +EA+
Sbjct: 8 LKVQECAAWWILERQSKLTKLMS---ETMSINPFMTPFIFDYHSLNDFDELVEAI 59
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 108 HTPCHTKGHISYYVTGKEGED-PAVFTG-DTLYTVKNLLFALTVEPSNV-KLQQKLAWAQ 164
H P G ++ G + P + G L N L +L PS + KL WA
Sbjct: 115 HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKL-----WAY 169
Query: 165 NQRQAGLPTIPSTIEEELETNPFMRVDLP----ELQKLVGFNDPIEAL 208
N + LP +PS + +EL + LP EL KL +N+ + +L
Sbjct: 170 NNQLTSLPMLPSGL-QELSVSDNQLASLPTLPSELYKLWAYNNRLTSL 216
>pdb|3UUW|A Chain A, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|B Chain B, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|C Chain C, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|D Chain D, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile
Length = 308
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 122 TGKEGEDPAVFTGDTLYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEE 181
+G + E + + + VKNL E N+ L+Q AW +Q G I + +
Sbjct: 220 SGTKLEQVEILSKGKIQRVKNLNVLEIEEGGNLTLKQSGAWVNILKQKGFEDISNHFIDC 279
Query: 182 LETN 185
+E N
Sbjct: 280 IENN 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,631,962
Number of Sequences: 62578
Number of extensions: 263284
Number of successful extensions: 606
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 19
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)