Query 027699
Match_columns 220
No_of_seqs 260 out of 2014
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 13:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02469 hydroxyacylglutathion 100.0 7.4E-47 1.6E-51 308.1 26.3 219 1-220 1-258 (258)
2 PLN02398 hydroxyacylglutathion 100.0 1.1E-43 2.3E-48 296.2 25.5 212 1-218 76-329 (329)
3 PRK10241 hydroxyacylglutathion 100.0 2.2E-43 4.8E-48 287.2 24.4 210 1-218 1-251 (251)
4 TIGR03413 GSH_gloB hydroxyacyl 100.0 8.4E-43 1.8E-47 283.5 24.4 209 3-218 1-248 (248)
5 KOG0813 Glyoxylase [General fu 100.0 2.9E-36 6.3E-41 241.0 21.1 217 2-220 2-265 (265)
6 PLN02962 hydroxyacylglutathion 100.0 3.8E-31 8.2E-36 214.4 23.2 194 8-211 20-237 (251)
7 KOG0814 Glyoxylase [General fu 99.9 3.5E-24 7.6E-29 159.5 11.4 189 10-211 19-227 (237)
8 PRK11921 metallo-beta-lactamas 99.9 9.6E-23 2.1E-27 176.2 14.6 160 5-172 26-226 (394)
9 PRK05452 anaerobic nitric oxid 99.9 1.2E-21 2.7E-26 172.5 14.4 121 10-137 33-168 (479)
10 COG0491 GloB Zn-dependent hydr 99.8 7.3E-20 1.6E-24 147.6 17.6 126 9-141 22-173 (252)
11 smart00849 Lactamase_B Metallo 99.8 4.7E-19 1E-23 136.6 15.9 124 9-141 4-148 (183)
12 COG0426 FpaA Uncharacterized f 99.8 4.1E-19 8.8E-24 149.6 13.0 157 9-173 33-226 (388)
13 TIGR00649 MG423 conserved hypo 99.8 1.1E-18 2.4E-23 152.2 13.4 133 1-138 1-161 (422)
14 PF00753 Lactamase_B: Metallo- 99.7 6.8E-18 1.5E-22 130.2 9.0 124 8-139 3-149 (194)
15 PRK11244 phnP carbon-phosphoru 99.7 6.8E-16 1.5E-20 125.8 12.8 117 13-138 38-165 (250)
16 TIGR03675 arCOG00543 arCOG0054 99.7 2.8E-16 6E-21 142.2 10.2 134 1-138 175-349 (630)
17 PRK11539 ComEC family competen 99.7 2.6E-15 5.6E-20 139.3 15.7 128 1-137 501-641 (755)
18 TIGR00361 ComEC_Rec2 DNA inter 99.6 1E-14 2.2E-19 133.8 16.1 130 2-137 441-584 (662)
19 PRK00685 metal-dependent hydro 99.6 3.3E-15 7.2E-20 119.9 9.6 126 1-138 1-145 (228)
20 COG0595 mRNA degradation ribon 99.6 1.3E-14 2.8E-19 128.7 12.7 131 1-137 9-168 (555)
21 TIGR03307 PhnP phosphonate met 99.6 1.9E-14 4.2E-19 116.4 11.6 117 13-138 28-155 (238)
22 TIGR02651 RNase_Z ribonuclease 99.6 3.7E-14 8E-19 118.4 12.8 106 13-124 19-149 (299)
23 PF14597 Lactamase_B_5: Metall 99.6 3.9E-14 8.4E-19 106.8 11.0 148 10-173 22-184 (199)
24 PRK02113 putative hydrolase; P 99.5 1.2E-13 2.6E-18 112.6 13.3 113 13-137 36-171 (252)
25 PRK04286 hypothetical protein; 99.5 1.2E-13 2.7E-18 115.2 12.5 131 1-137 1-187 (298)
26 COG2333 ComEC Predicted hydrol 99.5 3.2E-13 7E-18 111.4 13.7 130 2-137 45-192 (293)
27 PRK02126 ribonuclease Z; Provi 99.5 1.8E-13 4E-18 115.6 12.2 113 4-123 9-173 (334)
28 TIGR02649 true_RNase_BN ribonu 99.5 2.1E-13 4.4E-18 114.2 11.2 107 13-123 18-150 (303)
29 PRK05184 pyrroloquinoline quin 99.5 5.2E-13 1.1E-17 111.6 12.5 119 13-137 40-200 (302)
30 COG1782 Predicted metal-depend 99.5 1.4E-13 3E-18 117.9 8.3 132 2-137 182-354 (637)
31 PRK00055 ribonuclease Z; Revie 99.4 4.7E-13 1E-17 109.9 9.8 76 1-80 2-93 (270)
32 COG1236 YSH1 Predicted exonucl 99.4 3.7E-13 8.1E-18 117.3 9.5 119 13-137 15-165 (427)
33 TIGR02108 PQQ_syn_pqqB coenzym 99.4 1.1E-12 2.4E-17 109.5 11.8 120 12-137 38-200 (302)
34 KOG1136 Predicted cleavage and 99.4 6.9E-13 1.5E-17 108.7 6.2 131 1-137 4-180 (501)
35 COG1237 Metal-dependent hydrol 99.4 7.7E-12 1.7E-16 99.8 11.4 68 12-81 22-94 (259)
36 PF12706 Lactamase_B_2: Beta-l 99.3 8.1E-13 1.8E-17 103.1 3.5 109 25-138 2-140 (194)
37 PRK11709 putative L-ascorbate 99.3 1.9E-11 4.1E-16 104.0 9.8 129 5-138 39-230 (355)
38 COG1234 ElaC Metal-dependent h 99.2 4E-11 8.6E-16 99.8 6.8 76 1-80 2-93 (292)
39 PF13483 Lactamase_B_3: Beta-l 99.1 1.4E-10 3E-15 88.5 7.5 108 6-137 2-115 (163)
40 COG2015 Alkyl sulfatase and re 99.0 6.2E-10 1.3E-14 95.4 6.6 158 2-166 116-335 (655)
41 COG2220 Predicted Zn-dependent 99.0 3.6E-09 7.9E-14 86.6 10.0 129 4-138 7-162 (258)
42 KOG4736 Uncharacterized conser 99.0 2.3E-09 4.9E-14 86.8 7.4 113 14-139 97-214 (302)
43 KOG1137 mRNA cleavage and poly 98.9 9.2E-10 2E-14 95.5 4.0 128 3-137 16-183 (668)
44 COG2248 Predicted hydrolase (m 98.8 4.5E-08 9.7E-13 77.9 10.0 132 1-137 1-186 (304)
45 COG1235 PhnP Metal-dependent h 98.8 1.4E-08 3.1E-13 83.6 6.4 53 25-80 42-95 (269)
46 KOG1135 mRNA cleavage and poly 98.6 1.9E-07 4.2E-12 83.2 9.9 120 13-137 16-173 (764)
47 TIGR02650 RNase_Z_T_toga ribon 98.6 2.1E-07 4.5E-12 76.2 8.4 62 14-82 12-83 (277)
48 KOG1361 Predicted hydrolase in 98.1 7.4E-06 1.6E-10 71.5 6.3 88 46-139 112-208 (481)
49 PF02112 PDEase_II: cAMP phosp 98.1 3.4E-05 7.3E-10 65.2 9.7 53 13-65 18-98 (335)
50 KOG2121 Predicted metal-depend 98.0 4.7E-06 1E-10 75.2 4.5 54 14-68 463-523 (746)
51 COG5212 PDE1 Low-affinity cAMP 97.1 0.0013 2.9E-08 53.4 5.9 90 46-137 112-233 (356)
52 KOG3798 Predicted Zn-dependent 96.7 0.0067 1.5E-07 48.9 6.7 90 46-140 132-243 (343)
53 PF13691 Lactamase_B_4: tRNase 96.5 0.016 3.5E-07 36.7 6.3 46 13-62 13-63 (63)
54 PF14234 DUF4336: Domain of un 95.4 0.24 5.3E-06 41.0 10.3 119 14-137 22-159 (285)
55 KOG1138 Predicted cleavage and 91.9 0.79 1.7E-05 40.8 7.4 86 46-137 96-242 (653)
56 KOG3592 Microtubule-associated 91.3 0.28 6.1E-06 45.2 4.2 46 22-68 56-103 (934)
57 PRK00129 upp uracil phosphorib 60.5 33 0.00071 27.1 6.1 56 22-81 124-185 (209)
58 TIGR01091 upp uracil phosphori 59.0 27 0.00058 27.5 5.3 56 22-81 122-183 (207)
59 COG4566 TtrR Response regulato 57.8 26 0.00057 27.4 4.8 45 22-67 48-96 (202)
60 KOG1145 Mitochondrial translat 52.7 18 0.0004 33.0 3.7 53 55-113 160-212 (683)
61 COG0052 RpsB Ribosomal protein 43.3 52 0.0011 26.9 4.6 40 22-61 157-196 (252)
62 COG1107 Archaea-specific RecJ- 42.4 21 0.00045 32.8 2.5 37 25-61 421-458 (715)
63 PF14681 UPRTase: Uracil phosp 40.8 40 0.00087 26.5 3.7 52 22-79 121-182 (207)
64 PRK13701 psiB plasmid SOS inhi 35.3 1.6E+02 0.0034 21.7 5.6 50 108-171 78-128 (144)
65 KOG1448 Ribose-phosphate pyrop 34.9 1.1E+02 0.0025 25.7 5.4 44 14-57 206-254 (316)
66 PLN02541 uracil phosphoribosyl 31.9 1.1E+02 0.0023 25.0 4.8 57 23-81 158-220 (244)
67 PF14572 Pribosyl_synth: Phosp 30.7 2.5E+02 0.0054 21.9 6.4 62 16-79 77-143 (184)
68 PRK04923 ribose-phosphate pyro 30.7 1.7E+02 0.0037 24.8 6.1 55 22-79 217-277 (319)
69 PRK02458 ribose-phosphate pyro 30.3 1.5E+02 0.0032 25.2 5.6 56 22-79 218-278 (323)
70 COG0462 PrsA Phosphoribosylpyr 27.4 94 0.002 26.3 3.9 62 16-79 208-274 (314)
71 PF06290 PsiB: Plasmid SOS inh 27.2 2.2E+02 0.0047 21.1 5.2 51 107-171 77-128 (143)
72 PRK02269 ribose-phosphate pyro 26.5 90 0.002 26.4 3.7 55 22-79 217-277 (320)
73 COG0505 CarA Carbamoylphosphat 26.2 1.5E+02 0.0033 25.6 4.9 38 22-59 179-233 (368)
74 PF03123 CAT_RBD: CAT RNA bind 24.4 1.8E+02 0.004 17.9 4.1 28 1-31 1-28 (59)
75 KOG1251 Serine racemase [Signa 23.3 1.8E+02 0.004 24.0 4.7 50 32-82 160-210 (323)
76 PF12000 Glyco_trans_4_3: Gkyc 23.2 1.8E+02 0.0038 22.3 4.4 37 37-77 57-93 (171)
77 PRK07199 phosphoribosylpyropho 22.8 1E+02 0.0022 25.8 3.4 36 22-57 211-251 (301)
78 PRK00553 ribose-phosphate pyro 22.3 1.1E+02 0.0025 26.0 3.6 36 22-57 218-258 (332)
79 cd02791 MopB_CT_Nitrate-R-NapA 22.1 2.6E+02 0.0056 19.3 5.0 63 54-119 15-81 (122)
80 COG3265 GntK Gluconate kinase 22.0 66 0.0014 24.3 1.8 88 131-218 23-115 (161)
81 PLN02297 ribose-phosphate pyro 21.4 1.2E+02 0.0026 25.8 3.5 36 22-57 230-270 (326)
82 PF06415 iPGM_N: BPG-independe 21.1 28 0.00061 27.9 -0.3 25 54-79 42-67 (223)
83 PF00478 IMPDH: IMP dehydrogen 20.6 1.6E+02 0.0036 25.4 4.2 45 35-79 111-156 (352)
No 1
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=7.4e-47 Score=308.06 Aligned_cols=219 Identities=80% Similarity=1.325 Sum_probs=198.3
Q ss_pred CeEEEEceeCCeeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCC
Q 027699 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSL 80 (220)
Q Consensus 1 m~v~~~~~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~ 80 (220)
|++.+++.+.+||+|||.++.+++++|||||+.+.+++.+++.+.+|++|++||.|+||++|+..|++.+|+++||++..
T Consensus 1 ~~i~~~~~~~dNy~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~ 80 (258)
T PLN02469 1 MKIIPVPCLEDNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSL 80 (258)
T ss_pred CeEEEeccccceEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEech
Confidence 78999999999999999985456899999999999999999999999999999999999999999999998899999876
Q ss_pred CCCCCCcEEcCCCCEEEeCCc-eeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc----------------------
Q 027699 81 DNVKGCTHQVENGDKFSIGAH-VNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL---------------------- 137 (220)
Q Consensus 81 ~~~~~~~~~~~~g~~~~~g~~-~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~---------------------- 137 (220)
+..+.....+.+|+.+.+| + ..+++++|||||+|+++|+++...++.+++||||++
T Consensus 81 ~~~~~~~~~v~~gd~i~lg-~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~~ 159 (258)
T PLN02469 81 DNVKGCTHPVENGDKLSLG-KDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCV 159 (258)
T ss_pred hcCCCCCeEeCCCCEEEEC-CceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCCCCCCHHHHHHHHHH
Confidence 5555556778999999998 6 689999999999999999997531112699999987
Q ss_pred ----------------ccccccchhhccCCChHHHHHHHHHHHHhhhCCCCCCcCcHHHHHHhCCccccCcHHHHHHhCC
Q 027699 138 ----------------YTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVDLPELQKLVGF 201 (220)
Q Consensus 138 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~~~~~~~l~~e~~~n~~l~~~~~~~~~~~~~ 201 (220)
|+..++.|+.+++|++..+...++.+++++..+.+++||||++||++|||||+..++++++++.
T Consensus 160 ~l~~Lp~~t~vypGH~yt~~nl~Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~~ 239 (258)
T PLN02469 160 TLGSLPKPTQVYCGHEYTVKNLKFALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDLPEIQEKVGC 239 (258)
T ss_pred HHHcCCCCeEEEcCCCCchhHHHHHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCCHHHHHHhcC
Confidence 7888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHhhccCCC
Q 027699 202 NDPIEALREIRKRKDNWRG 220 (220)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~ 220 (220)
.++.++|++||++||+|.|
T Consensus 240 ~~~~~~f~~lR~~kd~f~~ 258 (258)
T PLN02469 240 ESPVEALREVRKMKDNWKG 258 (258)
T ss_pred CCHHHHHHHHHHHHhccCC
Confidence 8999999999999999965
No 2
>PLN02398 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=1.1e-43 Score=296.24 Aligned_cols=212 Identities=45% Similarity=0.755 Sum_probs=195.2
Q ss_pred CeEEEEceeCCeeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCC
Q 027699 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSL 80 (220)
Q Consensus 1 m~v~~~~~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~ 80 (220)
|+|+.+|.+.+||+|+|.++.++.+++||||+...+.+.+++.+.++++|++||.|+||+||+..|.+.+ +++||++..
T Consensus 76 ~~i~~ip~l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~ 154 (329)
T PLN02398 76 LQIELVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAV 154 (329)
T ss_pred cEEEEEeeeCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehH
Confidence 6899999999999999987656789999999999999999999999999999999999999999999998 799999876
Q ss_pred C--CCCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc---------------------
Q 027699 81 D--NVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL--------------------- 137 (220)
Q Consensus 81 ~--~~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~--------------------- 137 (220)
+ ..+.....+.+|+++.++ +.+++++++||||+|+++|+++.. +++|+||++
T Consensus 155 ~~~~i~~~d~~v~dGd~i~lg-g~~l~vi~tPGHT~GhI~~~~~~~----~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~ 229 (329)
T PLN02398 155 DKDRIPGIDIVLKDGDKWMFA-GHEVLVMETPGHTRGHISFYFPGS----GAIFTGDTLFSLSCGKLFEGTPEQMLSSLQ 229 (329)
T ss_pred HhhhccCCcEEeCCCCEEEEC-CeEEEEEeCCCcCCCCEEEEECCC----CEEEECCCcCCCCcCCCCCCCHHHHHHHHH
Confidence 3 345567788999999999 999999999999999999998764 799999998
Q ss_pred ----------------ccccccchhhccCCChHHHHHHHHHHHHhhhCCCCCCcCcHHHHHHhCCccccCcHHHHHHhC-
Q 027699 138 ----------------YTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVDLPELQKLVG- 200 (220)
Q Consensus 138 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~~~~~~~l~~e~~~n~~l~~~~~~~~~~~~- 200 (220)
|+..++.|+..++|++..+...++.+++++..+.+++||||++|+++|||||+....++++++
T Consensus 230 rL~~L~~~t~VypGHgyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t~Pstl~~E~~~NPFlR~~~~~v~~~~~~ 309 (329)
T PLN02398 230 KIISLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTSSTDIRKSLSI 309 (329)
T ss_pred HHHcCCCCeEEECCCCChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCcCCccHHHHHhhCCeecCCCHHHHHHhcC
Confidence 778899999999999999999999999999999999999999999999999999999998876
Q ss_pred --CCCHHHHHHHHHHhhccC
Q 027699 201 --FNDPIEALREIRKRKDNW 218 (220)
Q Consensus 201 --~~~~~~~~~~~~~~~~~~ 218 (220)
..++.++|++||++||+|
T Consensus 310 ~~~~~~~~~f~~lR~~Kd~f 329 (329)
T PLN02398 310 PDTADEAEALGIIRRAKDNF 329 (329)
T ss_pred ccCCCHHHHHHHHHHHhhCC
Confidence 378999999999999998
No 3
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=100.00 E-value=2.2e-43 Score=287.25 Aligned_cols=210 Identities=31% Similarity=0.557 Sum_probs=192.3
Q ss_pred CeEEEEceeCCeeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCC
Q 027699 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSL 80 (220)
Q Consensus 1 m~v~~~~~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~ 80 (220)
|+|+++|.+.+||+|++.++ ++++++||||....+++.+++.+.++++|++||.|.||+||+..|++++|+++||++..
T Consensus 1 ~~i~~~~~~~dNy~~li~~~-~~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~ 79 (251)
T PRK10241 1 MNLNSIPAFDDNYIWVLNDE-AGRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQE 79 (251)
T ss_pred CeeEEeeeecceEEEEEEcC-CCcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEeccc
Confidence 89999999999999999874 46799999999999999999999899999999999999999999999998899999876
Q ss_pred CCCCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc-----------------------
Q 027699 81 DNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL----------------------- 137 (220)
Q Consensus 81 ~~~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~----------------------- 137 (220)
.........+.+|+.+.++ +..++++++||||+|+++|+.. .++|+||++
T Consensus 80 ~~~~~~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~~------~~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl 152 (251)
T PRK10241 80 TQDKGTTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFSK------PYLFCGDTLFSGGCGRLFEGTASQMYQSLKKI 152 (251)
T ss_pred ccccCCceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeecC------CcEEEcCeeccCCcCCCCCCCHHHHHHHHHHH
Confidence 5544556778899999999 8999999999999999999752 589999988
Q ss_pred --------------ccccccchhhccCCChHHHHHHHHHHHHhhhCCCCCCcCcHHHHHHhCCccccCcHHHHHHhCC--
Q 027699 138 --------------YTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVDLPELQKLVGF-- 201 (220)
Q Consensus 138 --------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~~~~~~~l~~e~~~n~~l~~~~~~~~~~~~~-- 201 (220)
|+..++.|+..++|++..+...++.+++++..+.+++|||++.|+++|||||+...++++.++.
T Consensus 153 ~~l~~~t~i~pgH~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~~~~ 232 (251)
T PRK10241 153 NALPDDTLICCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVINEET 232 (251)
T ss_pred HcCCCCEEEECCCCChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCCHHHHHHhcccc
Confidence 7889999999999999999999999999999999999999999999999999999999887764
Q ss_pred --CCHHHHHHHHHHhhccC
Q 027699 202 --NDPIEALREIRKRKDNW 218 (220)
Q Consensus 202 --~~~~~~~~~~~~~~~~~ 218 (220)
.++.++|++||++||+|
T Consensus 233 ~~~~~~~~f~~lr~~kd~~ 251 (251)
T PRK10241 233 LLQQPEERFAWLRSKKDRF 251 (251)
T ss_pred CCCCHHHHHHHHHHHhcCC
Confidence 78999999999999997
No 4
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=8.4e-43 Score=283.46 Aligned_cols=209 Identities=45% Similarity=0.779 Sum_probs=190.1
Q ss_pred EEEEceeCCeeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC
Q 027699 3 IFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN 82 (220)
Q Consensus 3 v~~~~~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~ 82 (220)
|.++|++++||+|+|.++. ++++|||||....+.+.+++.+.++++|++||.|+||++|+..|++.++ ++||++..+.
T Consensus 1 v~~~~~~~dN~~yli~~~~-~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~~ 78 (248)
T TIGR03413 1 IIPIPALSDNYIWLLHDPD-GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEER 78 (248)
T ss_pred CEEecccccEEEEEEEcCC-CCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEeccccc
Confidence 5789999999999999853 6899999998888999999999899999999999999999999999985 9999988765
Q ss_pred CCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc-------------------------
Q 027699 83 VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL------------------------- 137 (220)
Q Consensus 83 ~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~------------------------- 137 (220)
.+.....+.+|+.+.++ +..++++++||||+|+++|+++.. +++|+||++
T Consensus 79 ~~~~~~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~~~----~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~ 153 (248)
T TIGR03413 79 IPGITHPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLPDS----PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAA 153 (248)
T ss_pred CCCCcEEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEECCC----CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHc
Confidence 55556788999999999 999999999999999999999864 799999997
Q ss_pred ------------ccccccchhhccCCChHHHHHHHHHHHHhhhCCCCCCcCcHHHHHHhCCccccCcHHHHHHhCC--CC
Q 027699 138 ------------YTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPTIPSTIEEELETNPFMRVDLPELQKLVGF--ND 203 (220)
Q Consensus 138 ------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~~~~~~~l~~e~~~n~~l~~~~~~~~~~~~~--~~ 203 (220)
|+..++.|+..++|.+..+...++.++++...|.+++|||+++|+++|||||+...+++++++. .+
T Consensus 154 l~~~~~i~pGH~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~~~~~~~~~~~~~ 233 (248)
T TIGR03413 154 LPDDTLVYCAHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAALGSQGAD 233 (248)
T ss_pred CCCCeEEECCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHhhCCeecCCCHHHHHHhcCcCCC
Confidence 6677788888888999999999999999999999999999999999999999999999998873 68
Q ss_pred HHHHHHHHHHhhccC
Q 027699 204 PIEALREIRKRKDNW 218 (220)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (220)
+.++|++||++||+|
T Consensus 234 ~~~~~~~lr~~kd~~ 248 (248)
T TIGR03413 234 PVEVFAALRAWKDNF 248 (248)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999999997
No 5
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=240.98 Aligned_cols=217 Identities=46% Similarity=0.754 Sum_probs=189.8
Q ss_pred eEEE-EceeCCeeEEEEEe-CCCCeEEEEcCCChHHHHHHHHH---cCCcccEEEecCCCCcccCchHHHHhhCC-CCEE
Q 027699 2 KIFH-IPCLEDNYAYLIIE-ETTKEAAVVDPVEPEKIIEAAKQ---HGVNLTTVLTTHHHWDHAGGNEKMKEMVP-GIKV 75 (220)
Q Consensus 2 ~v~~-~~~~~~n~~~li~~-~~~~~~iliD~g~~~~~~~~l~~---~~~~i~~iiiTH~H~DH~gg~~~l~~~~p-~~~i 75 (220)
.+.. ++.+++||+||+.+ +....+.++||..++.+...+.+ .+.++.+|+.||.|+||+||+..|.+.+| ++.+
T Consensus 2 ~i~~~~~~~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v 81 (265)
T KOG0813|consen 2 GIKPRLPTLQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKV 81 (265)
T ss_pred CccccccccCCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEE
Confidence 3444 78899999999998 55677889999988888887777 67799999999999999999999999854 8999
Q ss_pred EcCCCCCCCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc------------------
Q 027699 76 YGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL------------------ 137 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~------------------ 137 (220)
|.+.....+.....+.+|+.+.++ |.+|++++|||||.|+++|++.. ..+.+.+|+||++
T Consensus 82 ~g~~~~r~~~i~~~~~~~e~~~~~-g~~v~~l~TPgHT~~hi~~~~~~-~~~e~~iFtGDtlf~~GcG~~FEgt~~~M~~ 159 (265)
T KOG0813|consen 82 IGGADDRIPGITRGLKDGETVTVG-GLEVRCLHTPGHTAGHICYYVTE-STGERAIFTGDTLFGAGCGRFFEGTAEQMDS 159 (265)
T ss_pred ecCChhcCccccccCCCCcEEEEC-CEEEEEEeCCCccCCcEEEEeec-CCCCCeEEeCCceeecCccchhcCCHHHHHH
Confidence 998755566667779999999999 99999999999999999999996 2223899999998
Q ss_pred -------------------ccccccchhhccCCChHHHHHHHHHHHHhhhCCCCC-CcCcHHHHHHhCCccccCcHHHHH
Q 027699 138 -------------------YTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT-IPSTIEEELETNPFMRVDLPELQK 197 (220)
Q Consensus 138 -------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~~~-~~~~l~~e~~~n~~l~~~~~~~~~ 197 (220)
|+.+++.|+..+.|.+....+.+.++++......++ .|+|+++|+.+|||+|...+.+++
T Consensus 160 sl~~l~~L~~~t~iypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~~~~~v~k 239 (265)
T KOG0813|consen 160 SLNELIALPDDTRIYPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRLKKEKVQK 239 (265)
T ss_pred hHHHhhcCCCCceEccCcccccccceeeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCchhhcchHhhhh
Confidence 788888899999999988888999999988888888 999999999999999999988888
Q ss_pred HhC---CCCHHHHHHHHHHhhccCCC
Q 027699 198 LVG---FNDPIEALREIRKRKDNWRG 220 (220)
Q Consensus 198 ~~~---~~~~~~~~~~~~~~~~~~~~ 220 (220)
..+ ..+.+.+|.+||..||.|+.
T Consensus 240 ~~g~~~~~~~~~~m~~lr~~K~~~~~ 265 (265)
T KOG0813|consen 240 ALGLTETADRIVVMGKLRELKNRFSK 265 (265)
T ss_pred hhCCcccccHHHHHHHHHHhhhccCC
Confidence 887 67789999999999999873
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=3.8e-31 Score=214.44 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=148.0
Q ss_pred eeCCeeEEEEEeCC--CCeEEEEcCC--ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCCC
Q 027699 8 CLEDNYAYLIIEET--TKEAAVVDPV--EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNV 83 (220)
Q Consensus 8 ~~~~n~~~li~~~~--~~~~iliD~g--~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~ 83 (220)
...+| ||+|.+++ +++++||||| ..+.+++.+++.+.+|.+|++||.|+||++|+..|++++|+++++++.....
T Consensus 20 ~~~~~-~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~~ 98 (251)
T PLN02962 20 ESSTY-TYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASGS 98 (251)
T ss_pred CceeE-EEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccCC
Confidence 34555 99998742 4789999999 4577888899999999999999999999999999999888999999765432
Q ss_pred CCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccC--CCCCCeEEeCCccccccccchhhccC------CChHH
Q 027699 84 KGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGK--EGEDPAVFTGDTLYTVKNLLFALTVE------PSNVK 155 (220)
Q Consensus 84 ~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~--~~~~~ilfsGD~~~~~~~~~~~~~~~------~~~~~ 155 (220)
.....+.+|+.+.++ +..+++++|||||+|+++|++.+. ..+.+++|+||++ |..+++ .+...
T Consensus 99 -~~d~~l~~g~~i~~g-~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~L-------f~~g~Gr~d~~~g~~~~ 169 (251)
T PLN02962 99 -KADLFVEPGDKIYFG-DLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDAL-------LIRGCGRTDFQGGSSDQ 169 (251)
T ss_pred -CCCEEeCCCCEEEEC-CEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCee-------ccCCcCCCCCCCCCHHH
Confidence 234668899999999 999999999999999999998642 1112699999999 443333 34456
Q ss_pred HHHHHH-HHHHh-------hhCCCCC-CcCcHHHHHHhCCccccCcHHHHHHhC---CCCHHHHHHHH
Q 027699 156 LQQKLA-WAQNQ-------RQAGLPT-IPSTIEEELETNPFMRVDLPELQKLVG---FNDPIEALREI 211 (220)
Q Consensus 156 ~~~~l~-~~~~~-------~~hg~~~-~~~~l~~e~~~n~~l~~~~~~~~~~~~---~~~~~~~~~~~ 211 (220)
+.+++. .+..+ ||||... .++|+++|++.||||+...+++.+.+. ...|+.+..++
T Consensus 170 l~~Sl~~~l~~L~~~~~i~PGHg~~~~~~tti~~e~~~n~~l~~~~~~fv~~~~~~~~~~p~~~~~~~ 237 (251)
T PLN02962 170 LYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEMLYNPRLTKDEETFKTIMENLNLPYPKMIDVAV 237 (251)
T ss_pred HHHHHHHHHHcCCCCeEEECCCCCCCCCCcCHHHHHhhCcccCCCHHHHHHHHhhCCCCCchHHHHHH
Confidence 667764 45443 7998422 348999999999999877777766443 45555544433
No 7
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.91 E-value=3.5e-24 Score=159.52 Aligned_cols=189 Identities=26% Similarity=0.371 Sum_probs=146.1
Q ss_pred CCeeEEEEEeCCCCeEEEEcCC--ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCCCCCCc
Q 027699 10 EDNYAYLIIEETTKEAAVVDPV--EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNVKGCT 87 (220)
Q Consensus 10 ~~n~~~li~~~~~~~~iliD~g--~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~~~ 87 (220)
+..++||+.+-.++++++|||- ...+-.+.++++|.++.|-+.||.|+||+.|..+|+..+|+++-+++...- ...+
T Consensus 19 SsTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SG-akAD 97 (237)
T KOG0814|consen 19 SSTYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASG-AKAD 97 (237)
T ss_pred cceEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHHHHhhhccc-cccc
Confidence 4568999998778999999997 345567778999999999999999999999999999999988866665432 3345
Q ss_pred EEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCccccccccchhhccCCCh------HHHHHHH-
Q 027699 88 HQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLYTVKNLLFALTVEPSN------VKLQQKL- 160 (220)
Q Consensus 88 ~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~~~~~~~~~~~~~~~~------~~~~~~l- 160 (220)
..+++|+.+++| ++.+++..|||||+|++.|+..+. +..|+||++ .....++.+ .++..+.
T Consensus 98 ~~l~~Gd~i~~G-~~~le~ratPGHT~GC~TyV~~d~----~~aFTGDal-------LIRgCGRTDFQqG~~~~LyesVH 165 (237)
T KOG0814|consen 98 LHLEDGDIIEIG-GLKLEVRATPGHTNGCVTYVEHDL----RMAFTGDAL-------LIRGCGRTDFQQGCPASLYESVH 165 (237)
T ss_pred cccCCCCEEEEc-cEEEEEecCCCCCCceEEEEecCc----ceeeeccee-------EEeccCccchhccChHHHHHHHh
Confidence 778999999999 999999999999999999999877 899999999 444443322 2332222
Q ss_pred HHHHHh-------hhCCCC-CCcCcHHHHHHhCCccccCcHHHHH---HhCCCCHHHHHHHH
Q 027699 161 AWAQNQ-------RQAGLP-TIPSTIEEELETNPFMRVDLPELQK---LVGFNDPIEALREI 211 (220)
Q Consensus 161 ~~~~~~-------~~hg~~-~~~~~l~~e~~~n~~l~~~~~~~~~---~~~~~~~~~~~~~~ 211 (220)
+++-.+ |+|.-. ...||+.+|+.+||.|+-..+++.+ +++...|+++-.+.
T Consensus 166 ~kIFTLP~d~~iYpaHdY~G~~~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~yPk~Id~aV 227 (237)
T KOG0814|consen 166 SKIFTLPEDYLIYPAHDYKGFLVSTVWEEKNLNPRLTKSKEEFVKIMKNLNLPYPKQIDKAV 227 (237)
T ss_pred HHheeCCCceEEeeccccCceEeeehhhhhccCcccccCHHHHHHHHHhcCCCChhhhCccc
Confidence 122222 455422 2348999999999999988888755 55688888766554
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.89 E-value=9.6e-23 Score=176.18 Aligned_cols=160 Identities=19% Similarity=0.331 Sum_probs=118.6
Q ss_pred EEceeCCeeEEEEEeCCCCeEEEEcCCC---hHHHHHHHHHc-CC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCC
Q 027699 5 HIPCLEDNYAYLIIEETTKEAAVVDPVE---PEKIIEAAKQH-GV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 5 ~~~~~~~n~~~li~~~~~~~~iliD~g~---~~~~~~~l~~~-~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~ 79 (220)
.++...+.|||+|.+ ++.+|||||. .+.+.+.+++. +. +|++|++||.|+||+||+..+.+.+|++++|+++
T Consensus 26 ~~~~g~~~NsyLI~~---~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~ 102 (394)
T PRK11921 26 STHRGSSYNSYLIKD---EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTK 102 (394)
T ss_pred ecCCceEEEEEEEeC---CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECH
Confidence 344444455999974 4589999984 34566666553 33 7999999999999999999999999999999987
Q ss_pred CCC--------CCCCcEEcCCCCEEEeCCceeEEEEeCCC-CCCCCEEEEEccCCCCCCeEEeCCcccc--ccccch---
Q 027699 80 LDN--------VKGCTHQVENGDKFSIGAHVNVLSLHTPC-HTKGHISYYVTGKEGEDPAVFTGDTLYT--VKNLLF--- 145 (220)
Q Consensus 80 ~~~--------~~~~~~~~~~g~~~~~g~~~~i~~~~~pg-Ht~~~~~~~~~~~~~~~~ilfsGD~~~~--~~~~~~--- 145 (220)
... .......+.+|+++++| +.+++++++|| |+||+++++++.. ++|||||++-. .....|
T Consensus 103 ~~~~~l~~~~~~~~~~~~v~~g~~l~lG-~~~l~~i~tP~~H~p~~~~~y~~~~----~vLFsgD~fG~~~~~~~~~~d~ 177 (394)
T PRK11921 103 NGAKSLKGHYHQDWNFVVVKTGDRLEIG-SNELIFIEAPMLHWPDSMFTYLTGD----NILFSNDAFGQHYASELMYNDL 177 (394)
T ss_pred HHHHHHHHHhCCCCceEEeCCCCEEeeC-CeEEEEEeCCCCCCCCceEEEEcCC----CEEEecCcccccccCccccccc
Confidence 532 11234667899999999 99999999998 9999999999876 89999999721 111112
Q ss_pred --------------hhccCCChHHHHHHHHHHHHh--------hhCCCC
Q 027699 146 --------------ALTVEPSNVKLQQKLAWAQNQ--------RQAGLP 172 (220)
Q Consensus 146 --------------~~~~~~~~~~~~~~l~~~~~~--------~~hg~~ 172 (220)
+..+.|....+...+++++.+ |+||+.
T Consensus 178 ~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i 226 (394)
T PRK11921 178 VDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVI 226 (394)
T ss_pred ccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccE
Confidence 223345555666777777732 799875
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.87 E-value=1.2e-21 Score=172.48 Aligned_cols=121 Identities=21% Similarity=0.431 Sum_probs=97.3
Q ss_pred CCeeEEEEEeCCCCeEEEEcCCC---hHHHHHHHHHc-CC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC--
Q 027699 10 EDNYAYLIIEETTKEAAVVDPVE---PEKIIEAAKQH-GV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN-- 82 (220)
Q Consensus 10 ~~n~~~li~~~~~~~~iliD~g~---~~~~~~~l~~~-~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~-- 82 (220)
...|||||.+ ++.+|||||. ...+++.+.+. +. +|++|++||.|+||+|+++.|++.+|+++||+++...
T Consensus 33 ~t~NsYLI~~---~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~ 109 (479)
T PRK05452 33 SSYNSYLIRE---EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDS 109 (479)
T ss_pred cEEEEEEEEC---CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHH
Confidence 3345999985 4689999984 34556665542 33 7999999999999999999999988899999987543
Q ss_pred -------CCCCcEEcCCCCEEEeCCceeEEEEeCCC-CCCCCEEEEEccCCCCCCeEEeCCcc
Q 027699 83 -------VKGCTHQVENGDKFSIGAHVNVLSLHTPC-HTKGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 83 -------~~~~~~~~~~g~~~~~g~~~~i~~~~~pg-Ht~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
.......+++|+++.+|++.++++++||+ ||||+++++++.. ++|||||++
T Consensus 110 l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~~----~vLFsgD~f 168 (479)
T PRK05452 110 INGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGD----AVLFSNDAF 168 (479)
T ss_pred HHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcCC----CEEEecccc
Confidence 11234678899999998337899999997 9999999999876 899999986
No 10
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.85 E-value=7.3e-20 Score=147.62 Aligned_cols=126 Identities=32% Similarity=0.551 Sum_probs=98.2
Q ss_pred eCCeeEEEEEeCCCC-eEEEEcCCC----hHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC-
Q 027699 9 LEDNYAYLIIEETTK-EAAVVDPVE----PEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN- 82 (220)
Q Consensus 9 ~~~n~~~li~~~~~~-~~iliD~g~----~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~- 82 (220)
+..++++++.. ++ ..+|||||. ...+.+.+...+.+|++|++||.|+||++|+..+.+.++.++++.++...
T Consensus 22 ~~~~~~~~~~~--~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~ 99 (252)
T COG0491 22 LSGNSVYLLVD--GEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPL 99 (252)
T ss_pred cccccEEEEEc--CCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhh
Confidence 45555777776 44 799999993 35677778888879999999999999999999998877446774443221
Q ss_pred ------------------C--CCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcccccc
Q 027699 83 ------------------V--KGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLYTVK 141 (220)
Q Consensus 83 ------------------~--~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~~~~ 141 (220)
. ......+.+++.+.++ +..+++++|||||||+++|+++.. +++|+||+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tpGHT~g~~~~~~~~~----~~l~~gD~~~~~~ 173 (252)
T COG0491 100 LLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG-GLELEVLHTPGHTPGHIVFLLEDG----GVLFTGDTLFAGD 173 (252)
T ss_pred hhhcccccccccccccCCCCccccceecCCCCEEEec-CeEEEEEECCCCCCCeEEEEECCc----cEEEecceeccCC
Confidence 0 1223445688999999 899999999999999999999986 6999999995443
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.82 E-value=4.7e-19 Score=136.60 Aligned_cols=124 Identities=28% Similarity=0.510 Sum_probs=99.4
Q ss_pred eCCeeEEEEEeCCCCeEEEEcCC-C-hHHHHHHHHHcCC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC--C
Q 027699 9 LEDNYAYLIIEETTKEAAVVDPV-E-PEKIIEAAKQHGV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN--V 83 (220)
Q Consensus 9 ~~~n~~~li~~~~~~~~iliD~g-~-~~~~~~~l~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~--~ 83 (220)
.+.| |++|+. ++..+||||| . ...+.+.+++.+. ++++|++||.|.||++|+..+.+. +++++|+++... .
T Consensus 4 ~~~~-~~li~~--~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~~~ 79 (183)
T smart00849 4 VGVN-SYLVEG--DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAELL 79 (183)
T ss_pred ccee-EEEEEe--CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhHHH
Confidence 3455 999998 7889999999 2 2244445666655 899999999999999999988887 489999887644 0
Q ss_pred ----------------CCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcccccc
Q 027699 84 ----------------KGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLYTVK 141 (220)
Q Consensus 84 ----------------~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~~~~ 141 (220)
......+..++++.++ +.+++++++|||++++++++++.. +++|+||+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~----~vl~~gD~~~~~~ 148 (183)
T smart00849 80 KDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLPEG----KILFTGDLLFSGG 148 (183)
T ss_pred hccchhccccCcCCCCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEECCC----CEEEECCeeeccC
Confidence 1234557889999999 999999999999999999999874 8999999995433
No 12
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.81 E-value=4.1e-19 Score=149.62 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=117.8
Q ss_pred eCCeeEEEEEeCCCCeEEEEcCCCh---HHHHHHHHHc-CC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC-
Q 027699 9 LEDNYAYLIIEETTKEAAVVDPVEP---EKIIEAAKQH-GV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN- 82 (220)
Q Consensus 9 ~~~n~~~li~~~~~~~~iliD~g~~---~~~~~~l~~~-~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~- 82 (220)
..+-|+|||. +++.+||||+.. +.++..+++. .. +||+||++|..+||+|.++.+++.+|+++|+++....
T Consensus 33 GttyNSYLI~---~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~ 109 (388)
T COG0426 33 GTTYNSYLIV---GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAAR 109 (388)
T ss_pred CceeeeEEEe---CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHH
Confidence 3344599999 567899999843 4444455443 22 7999999999999999999999999999999987643
Q ss_pred -------CCCCcEEcCCCCEEEeCCceeEEEEeCCC-CCCCCEEEEEccCCCCCCeEEeCCccc---ccc----------
Q 027699 83 -------VKGCTHQVENGDKFSIGAHVNVLSLHTPC-HTKGHISYYVTGKEGEDPAVFTGDTLY---TVK---------- 141 (220)
Q Consensus 83 -------~~~~~~~~~~g~~~~~g~~~~i~~~~~pg-Ht~~~~~~~~~~~~~~~~ilfsGD~~~---~~~---------- 141 (220)
.+.....++.|+++++| |.+++++.+|- |+||++..+.+.. ++|||+|.+- +..
T Consensus 110 ~L~~~~~~~~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TYd~~~----kILFS~D~fG~h~~~~~~fded~~~~ 184 (388)
T COG0426 110 FLKGFYHDPEWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTYDPED----KILFSCDAFGAHVCDDYRFDEDIEEL 184 (388)
T ss_pred HHHHhcCCccceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEeecCC----cEEEccccccccccchhccccCHHHH
Confidence 12226788999999999 99999999998 9999999999877 8999999881 110
Q ss_pred ----ccchhhccCCChHHHHHHHHHHHHh------hhCCCCC
Q 027699 142 ----NLLFALTVEPSNVKLQQKLAWAQNQ------RQAGLPT 173 (220)
Q Consensus 142 ----~~~~~~~~~~~~~~~~~~l~~~~~~------~~hg~~~ 173 (220)
..-+...+.|........++.+..+ |+||+.-
T Consensus 185 ~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~ 226 (388)
T COG0426 185 LPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIW 226 (388)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCcee
Confidence 0012333445555666666666652 8999753
No 13
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.79 E-value=1.1e-18 Score=152.20 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=104.5
Q ss_pred CeEEEEcee---CCeeEEEEEeCCCCeEEEEcCCCh---HHH---------HHHHHHcCCcccEEEecCCCCcccCchHH
Q 027699 1 MKIFHIPCL---EDNYAYLIIEETTKEAAVVDPVEP---EKI---------IEAAKQHGVNLTTVLTTHHHWDHAGGNEK 65 (220)
Q Consensus 1 m~v~~~~~~---~~n~~~li~~~~~~~~iliD~g~~---~~~---------~~~l~~~~~~i~~iiiTH~H~DH~gg~~~ 65 (220)
+++++++.. +.| ||++.. ++..+|||||.. ..+ ...+.+...++++||+||.|.||++|++.
T Consensus 1 ~~i~~lGG~~eiG~n-~~ll~~--~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~ 77 (422)
T TIGR00649 1 VKIFALGGLGEIGKN-MYVVEI--DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPY 77 (422)
T ss_pred CEEEEccCCCccCCe-EEEEEE--CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHH
Confidence 577888876 677 999998 888999999931 111 23455555589999999999999999999
Q ss_pred HHhhCCCCEEEcCCCCC-------------CCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEE
Q 027699 66 MKEMVPGIKVYGGSLDN-------------VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVF 132 (220)
Q Consensus 66 l~~~~p~~~i~~~~~~~-------------~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilf 132 (220)
+...++.++||+++.+. .......+..++.+++|++++++++++++|+|++++|++...++ +++|
T Consensus 78 l~~~~~~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~--~ivy 155 (422)
T TIGR00649 78 LFHTVGFPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLG--YIVY 155 (422)
T ss_pred HHHhCCCCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCc--EEEE
Confidence 98887557899987643 11234567889999996259999999988889999999976544 7999
Q ss_pred eCCccc
Q 027699 133 TGDTLY 138 (220)
Q Consensus 133 sGD~~~ 138 (220)
|||+.+
T Consensus 156 tGD~~~ 161 (422)
T TIGR00649 156 TGDFKF 161 (422)
T ss_pred CCCcCC
Confidence 999973
No 14
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.74 E-value=6.8e-18 Score=130.18 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=87.6
Q ss_pred eeCCeeEEEEEeCCCCeEEEEcCCChHHHHHH-----HHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC
Q 027699 8 CLEDNYAYLIIEETTKEAAVVDPVEPEKIIEA-----AKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN 82 (220)
Q Consensus 8 ~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~-----l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~ 82 (220)
..+.| ||+|+. +++.+|||||........ ......+|++||+||.|+||+||+..|.+.++...++......
T Consensus 3 ~~~~n-~~li~~--~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~ 79 (194)
T PF00753_consen 3 EGGSN-SYLIEG--GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAA 79 (194)
T ss_dssp SEEEE-EEEEEE--TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHH
T ss_pred CeeEE-EEEEEE--CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeecccccc
Confidence 34556 999998 899999999943322222 2333449999999999999999999999998544444333221
Q ss_pred ------C-----------CC-CcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcccc
Q 027699 83 ------V-----------KG-CTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLYT 139 (220)
Q Consensus 83 ------~-----------~~-~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~~ 139 (220)
. .. .............+ ...+.....++|+++++++++... +++|+||+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~vlftGD~~~~ 149 (194)
T PF00753_consen 80 KAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGG-DRILFIIPGPGHGSDSLIIYLPGG----KVLFTGDLLFS 149 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEET-TEEEEEEESSSSSTTEEEEEETTT----TEEEEETTSCT
T ss_pred ccccccccccccccccccccccceeeecccccccc-cccccceeccccCCcceEEEeCCC----cEEEeeeEecc
Confidence 0 01 11222334444555 777888889999999999999765 89999999953
No 15
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.68 E-value=6.8e-16 Score=125.79 Aligned_cols=117 Identities=25% Similarity=0.290 Sum_probs=86.8
Q ss_pred eEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhh-CCCCEEEcCCCCC-------CC
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEM-VPGIKVYGGSLDN-------VK 84 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~-~p~~~i~~~~~~~-------~~ 84 (220)
.|++|.. ++..+|||||.. .+.+.+. ..++++||+||.|.||++|+..+... .+.++||++.... .+
T Consensus 38 ~s~li~~--~~~~iLiD~G~~-~~~~~~~--~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 112 (250)
T PRK11244 38 CSALIEF--NGARTLIDAGLP-DLAERFP--PGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHP 112 (250)
T ss_pred eEEEEEE--CCCEEEEECCCh-HHhhcCC--cccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCc
Confidence 4888887 778899999942 2222111 12899999999999999999776432 2357899887532 11
Q ss_pred C--C-cEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCccc
Q 027699 85 G--C-THQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLY 138 (220)
Q Consensus 85 ~--~-~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~ 138 (220)
. . ...+.+++.+.++ +++++.++++ |+.++++|++...+. +++|+||+.+
T Consensus 113 ~~~~~~~~l~~~~~~~~~-~~~I~~~~~~-H~~~s~g~~i~~~~~--~i~ysgDt~~ 165 (250)
T PRK11244 113 GILDFSHPLEPFEPFDLG-GLQVTPLPLN-HSKLTFGYLLETAHS--RVAYLTDTVG 165 (250)
T ss_pred cccccccccCCCCCeeEC-CEEEEEEeeC-CCcceeEEEEecCCe--EEEEEcCCCC
Confidence 1 1 1346788999999 9999999884 888999999987665 8999999974
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.67 E-value=2.8e-16 Score=142.25 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=95.4
Q ss_pred CeEEEEcee---CCeeEEEEEeCCCCeEEEEcCCChH-----HHHHHHHHcC---CcccEEEecCCCCcccCchHHHHhh
Q 027699 1 MKIFHIPCL---EDNYAYLIIEETTKEAAVVDPVEPE-----KIIEAAKQHG---VNLTTVLTTHHHWDHAGGNEKMKEM 69 (220)
Q Consensus 1 m~v~~~~~~---~~n~~~li~~~~~~~~iliD~g~~~-----~~~~~l~~~~---~~i~~iiiTH~H~DH~gg~~~l~~~ 69 (220)
|+++.++.. +.| ||+|.. ++..+|||||... .....+.... .++|+||+||.|.||+|+++.|.+.
T Consensus 175 m~i~~LGg~~eVG~S-c~Ll~~--~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~ 251 (630)
T TIGR03675 175 VRVTALGGFREVGRS-ALLLST--PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY 251 (630)
T ss_pred EEEEEEecCCccCCC-EEEEEE--CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh
Confidence 677887763 446 999998 7888999999321 1111222121 2799999999999999999998875
Q ss_pred CCCCEEEcCCCCC------------------C-C-----------CCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEE
Q 027699 70 VPGIKVYGGSLDN------------------V-K-----------GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISY 119 (220)
Q Consensus 70 ~p~~~i~~~~~~~------------------~-~-----------~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~ 119 (220)
..+.+||++..+. . + .....+..++.++++++++++++++ ||++|+.++
T Consensus 252 g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa~~ 330 (630)
T TIGR03675 252 GYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSAIA 330 (630)
T ss_pred CCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCceEE
Confidence 3368899987532 0 0 1234667788888843788888765 899999988
Q ss_pred EEccCCCCCCeEEeCCccc
Q 027699 120 YVTGKEGEDPAVFTGDTLY 138 (220)
Q Consensus 120 ~~~~~~~~~~ilfsGD~~~ 138 (220)
.+...++..+++||||+-+
T Consensus 331 ~~~i~dg~~~IvYTGD~~~ 349 (630)
T TIGR03675 331 HLHIGDGLYNIVYTGDFKY 349 (630)
T ss_pred EEEECCCCEEEEEeCCCCC
Confidence 7754332237999999874
No 17
>PRK11539 ComEC family competence protein; Provisional
Probab=99.66 E-value=2.6e-15 Score=139.33 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=106.5
Q ss_pred CeEEEEceeCCeeEEEEEeCCCCeEEEEcCCC--------hHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCC
Q 027699 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVE--------PEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPG 72 (220)
Q Consensus 1 m~v~~~~~~~~n~~~li~~~~~~~~iliD~g~--------~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~ 72 (220)
++++.+++.++. +.+|+. +++++|||+|. ...+.++++..|.++|++++||.|.||+||+..+.+.+|.
T Consensus 501 ~~v~~lDVGqG~-a~li~~--~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~ 577 (755)
T PRK11539 501 WRVDMLDVGHGL-AVVIER--NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPM 577 (755)
T ss_pred EEEEEEEccCce-EEEEEE--CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCc
Confidence 368889999999 888987 88999999993 2567889999999999999999999999999999999988
Q ss_pred CEEEcCCCCCCCCCcEEcCCCCEEEeCCceeEEEEeCCCCC-----CCCEEEEEccCCCCCCeEEeCCcc
Q 027699 73 IKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHT-----KGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 73 ~~i~~~~~~~~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt-----~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
.+++.+.... .......|+.+.++ +.++++++.++|. ++|+++.+..++. +++|+||.-
T Consensus 578 ~~i~~~~~~~---~~~~~~~g~~~~~~-~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~--~~LltGDi~ 641 (755)
T PRK11539 578 AWIRSPLNWA---NHLPCVRGEQWQWQ-GLTFSVHWPLEQSNDAGNNDSCVIRVDDGKH--SILLTGDLE 641 (755)
T ss_pred ceeeccCccc---CcccccCCCeEeEC-CEEEEEEecCcccCCCCCCccEEEEEEECCE--EEEEEeCCC
Confidence 8898864221 12345689999999 9999999887653 5688888877655 899999976
No 18
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.63 E-value=1e-14 Score=133.79 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=105.5
Q ss_pred eEEEEceeCCeeEEEEEeCCCCeEEEEcCCCh--------HHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCC
Q 027699 2 KIFHIPCLEDNYAYLIIEETTKEAAVVDPVEP--------EKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGI 73 (220)
Q Consensus 2 ~v~~~~~~~~n~~~li~~~~~~~~iliD~g~~--------~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~ 73 (220)
+++.+++.++. |.+|+. +++.+|||+|.. ..+.++++..|.++|++++||.|.||+||+..+.+.+|..
T Consensus 441 ~v~~lDVGqGd-aili~~--~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~ 517 (662)
T TIGR00361 441 QVDMLDVGQGL-AMFIGA--NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVK 517 (662)
T ss_pred EEEEEecCCce-EEEEEE--CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCcc
Confidence 67888999999 999988 678999999942 4588899999999999999999999999999999999777
Q ss_pred EEEcCCCCC-CCCCcEEcCCCCEEEeCCceeEEEEeCCC-----CCCCCEEEEEccCCCCCCeEEeCCcc
Q 027699 74 KVYGGSLDN-VKGCTHQVENGDKFSIGAHVNVLSLHTPC-----HTKGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 74 ~i~~~~~~~-~~~~~~~~~~g~~~~~g~~~~i~~~~~pg-----Ht~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
+++.+.... .......+..|+.++++ +.++++++.+. ....|+++.+..++. +++|+||+-
T Consensus 518 ~i~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~--~~L~tGD~~ 584 (662)
T TIGR00361 518 RLVIPKGFVEEGVAIEECKRGDVWQWQ-GLQFHVLSPEAPDPASKNNHSCVLWVDDGGN--SWLLTGDLE 584 (662)
T ss_pred EEEeccchhhCCCceEecCCCCEEeEC-CEEEEEECCCCccCCCCCCCceEEEEEECCe--eEEEecCCC
Confidence 888765422 12234567889999999 99999987531 245678888877655 899999997
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.61 E-value=3.3e-15 Score=119.93 Aligned_cols=126 Identities=22% Similarity=0.267 Sum_probs=89.8
Q ss_pred CeEEEEceeCCeeEEEEEeCCCCeEEEEcCCCh-HHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCC
Q 027699 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEP-EKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 1 m~v~~~~~~~~n~~~li~~~~~~~~iliD~g~~-~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~ 79 (220)
|+++.+ +.+ ||+|+. ++..+||||+.. .... .+.....++|+|++||.|.||++++..+.... ++++|++.
T Consensus 1 m~i~~l---G~s-~~li~~--~~~~iLiDP~~~~~~~~-~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~-~~~v~~~~ 72 (228)
T PRK00685 1 MKITWL---GHS-AFLIET--GGKKILIDPFITGNPLA-DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRT-GATVIANA 72 (228)
T ss_pred CEEEEE---cce-EEEEEE--CCEEEEECCCCCCCCCC-CCChhcCcccEEEeCCCCccccccHHHHHHhC-CCEEEEeH
Confidence 666655 456 999998 889999998521 1110 11111238999999999999999988776543 78888876
Q ss_pred CCC-----C-CCCcEEcCCCCEEEeCCceeEEEEeCCCCCCC------------CEEEEEccCCCCCCeEEeCCccc
Q 027699 80 LDN-----V-KGCTHQVENGDKFSIGAHVNVLSLHTPCHTKG------------HISYYVTGKEGEDPAVFTGDTLY 138 (220)
Q Consensus 80 ~~~-----~-~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~------------~~~~~~~~~~~~~~ilfsGD~~~ 138 (220)
... . ......++.++.++++ +++++++++. |++. ..+|.+...++ +++|+||+.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~--~i~~~GDt~~ 145 (228)
T PRK00685 73 ELANYLSEKGVEKTHPMNIGGTVEFD-GGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGK--TIYHAGDTGL 145 (228)
T ss_pred HHHHHHHhcCCCceeeccCCCcEEEC-CEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCe--EEEEecCccc
Confidence 432 1 1134567889999999 9999887653 5433 48888876655 8999999985
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.59 E-value=1.3e-14 Score=128.66 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=104.4
Q ss_pred CeEEEEce---eCCeeEEEEEeCCCCeEEEEcCC---Ch------HHH---HHHHHHcCCcccEEEecCCCCcccCchHH
Q 027699 1 MKIFHIPC---LEDNYAYLIIEETTKEAAVVDPV---EP------EKI---IEAAKQHGVNLTTVLTTHHHWDHAGGNEK 65 (220)
Q Consensus 1 m~v~~~~~---~~~n~~~li~~~~~~~~iliD~g---~~------~~~---~~~l~~~~~~i~~iiiTH~H~DH~gg~~~ 65 (220)
|++++++. .+.| +|+++. ++..+++|+| .. +.+ ...+.+...++++||+||.|.||+|++++
T Consensus 9 i~i~~lGG~~EiGkN-~~vve~--~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ 85 (555)
T COG0595 9 IKIFALGGVGEIGKN-MYVVEY--GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPY 85 (555)
T ss_pred eEEEEecChhhhccc-eEEEEE--CCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHH
Confidence 45666665 3567 999999 8899999999 11 111 22355555589999999999999999999
Q ss_pred HHhhCCCCEEEcCCCCC--------------CCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeE
Q 027699 66 MKEMVPGIKVYGGSLDN--------------VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAV 131 (220)
Q Consensus 66 l~~~~p~~~i~~~~~~~--------------~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~il 131 (220)
+....+.++||+++-+. .......+..++.++++ ++.++++++-+-.|+++++.+....+ .++
T Consensus 86 ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~-~~~v~f~~vtHSIPds~g~~i~Tp~G--~Iv 162 (555)
T COG0595 86 LLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFG-SFEVEFFPVTHSIPDSLGIVIKTPEG--NIV 162 (555)
T ss_pred HHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeC-cEEEEEEeecccCccceEEEEECCCc--cEE
Confidence 99987569999887654 11346778899999999 99999999965569999999988766 899
Q ss_pred EeCCcc
Q 027699 132 FTGDTL 137 (220)
Q Consensus 132 fsGD~~ 137 (220)
||||.-
T Consensus 163 ~TGDFk 168 (555)
T COG0595 163 YTGDFK 168 (555)
T ss_pred EeCCEE
Confidence 999997
No 21
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.58 E-value=1.9e-14 Score=116.38 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=85.6
Q ss_pred eEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhh-CCCCEEEcCCCCC-----C--C
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEM-VPGIKVYGGSLDN-----V--K 84 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~-~p~~~i~~~~~~~-----~--~ 84 (220)
.|++|.. ++..+|||||... +.+.+. ..++++||+||.|.||++|+..+... .+..+||+++... . +
T Consensus 28 ~s~~i~~--~~~~iliD~G~~~-~~~~~~--~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 102 (238)
T TIGR03307 28 CSAVIEF--NGARTLIDAGLTD-LAERFP--PGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHP 102 (238)
T ss_pred eEEEEEE--CCcEEEEECCChh-HhhccC--ccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCc
Confidence 4788887 7788999999322 222111 12799999999999999999766543 2357899886532 0 1
Q ss_pred C---CcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCccc
Q 027699 85 G---CTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLY 138 (220)
Q Consensus 85 ~---~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~ 138 (220)
. ....+..++.+.++ +++|+.+++. |+.++++|.+...++ +++|+||+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~-~~~i~~~~~~-H~~~~~g~~i~~~~~--~i~y~gDt~~ 155 (238)
T TIGR03307 103 GILDFSKPLEAFEPFDLG-GLRVTPLPLV-HSKLTFGYLLETDGQ--RVAYLTDTAG 155 (238)
T ss_pred ccccccccccCCceEEEC-CEEEEEEecC-CCCcceEEEEecCCc--EEEEEecCCC
Confidence 1 11236778899999 9999998884 888899999986655 8999999973
No 22
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.57 E-value=3.7e-14 Score=118.41 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCC---cccEEEecCCCCcccCchHHHHhhC------CCCEEEcCCCCC-
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEMV------PGIKVYGGSLDN- 82 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~~------p~~~i~~~~~~~- 82 (220)
+|++|.. ++..+|||||.. +...+.+.+. ++++||+||.|+||++|++.+.... ...+||+++...
T Consensus 19 ~~~~v~~--~~~~iLiD~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~ 94 (299)
T TIGR02651 19 PSIALKL--NGELWLFDCGEG--TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKE 94 (299)
T ss_pred ceEEEEE--CCeEEEEECCHH--HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHH
Confidence 4899988 678999999933 4445555543 6899999999999999999876431 246788887532
Q ss_pred --------------CCCCcEEcCCCC-EEEeCCceeEEEEeCCCCCCCCEEEEEccC
Q 027699 83 --------------VKGCTHQVENGD-KFSIGAHVNVLSLHTPCHTKGHISYYVTGK 124 (220)
Q Consensus 83 --------------~~~~~~~~~~g~-~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~ 124 (220)
.......+.+++ .+..+ +++++.+++. |+..+++|.+...
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-H~~~~~gy~i~~~ 149 (299)
T TIGR02651 95 FIETSLRVSYTYLNYPIKIHEIEEGGLVFEDD-GFKVEAFPLD-HSIPSLGYRFEEK 149 (299)
T ss_pred HHHHHHHHcccCCCceEEEEEccCCCceEecC-CEEEEEEEcC-CCCceEEEEEEEC
Confidence 011124566776 58888 9999999886 7888999988753
No 23
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.57 E-value=3.9e-14 Score=106.81 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=92.6
Q ss_pred CCeeEEEEEeCCCCeEEEEcCC-ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCCC---CC
Q 027699 10 EDNYAYLIIEETTKEAAVVDPV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNV---KG 85 (220)
Q Consensus 10 ~~n~~~li~~~~~~~~iliD~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~---~~ 85 (220)
.-| +|++.. .+..|+|||- ......+.+...| .+++|++||. ||+-....+++.| .++||+|..+.. -.
T Consensus 22 dfn-g~~~~~--p~GnilIDP~~ls~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ya~~~-~a~i~~p~~d~~~~p~~ 94 (199)
T PF14597_consen 22 DFN-GHAWRR--PEGNILIDPPPLSAHDWKHLDALG-GVAWIVLTNR--DHVRAAEDYAEQT-GAKIYGPAADAAQFPLA 94 (199)
T ss_dssp EEE-EEEE----TT--EEES-----HHHHHHHHHTT---SEEE-SSG--GG-TTHHHHHHHS---EEEEEGGGCCC-SS-
T ss_pred Cce-eEEEEc--CCCCEEecCccccHHHHHHHHhcC-CceEEEEeCC--hhHhHHHHHHHHh-CCeeeccHHHHhhCCCC
Confidence 345 787777 6778999997 4455667788877 7999999998 9999999999999 899999987762 23
Q ss_pred CcEEcCCCCEEEeCCceeEEEEeCCC-CCCCCEEEEEccCCCCCCeEEeCCcccccccc---chhhccCCChHHHHHHHH
Q 027699 86 CTHQVENGDKFSIGAHVNVLSLHTPC-HTKGHISYYVTGKEGEDPAVFTGDTLYTVKNL---LFALTVEPSNVKLQQKLA 161 (220)
Q Consensus 86 ~~~~~~~g~~~~~g~~~~i~~~~~pg-Ht~~~~~~~~~~~~~~~~ilfsGD~~~~~~~~---~~~~~~~~~~~~~~~~l~ 161 (220)
.+..+.+|+++--| +++++.|| ||||.+.+++++ +++++||++...... .++...--+...+.+++.
T Consensus 95 ~D~~l~dge~i~~g----~~vi~l~G~ktpGE~ALlled-----~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~ 165 (199)
T PF14597_consen 95 CDRWLADGEEIVPG----LWVIHLPGSKTPGELALLLED-----RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLR 165 (199)
T ss_dssp -SEEE-TT-BSSTT----EEEEEE-SSSSTTEEEEEETT-----TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHH
T ss_pred CccccccCCCccCc----eEEEEcCCCCCCceeEEEecc-----ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHH
Confidence 46788888855433 78899999 999999999987 599999988322221 122222234456777777
Q ss_pred HHHHh-------hhCCCCC
Q 027699 162 WAQNQ-------RQAGLPT 173 (220)
Q Consensus 162 ~~~~~-------~~hg~~~ 173 (220)
++.++ +|||-+.
T Consensus 166 RLa~~~~fe~lLvGdGwpi 184 (199)
T PF14597_consen 166 RLAAYPDFEWLLVGDGWPI 184 (199)
T ss_dssp HHHT-TT--EEEESBB--B
T ss_pred HHhccccccEEeecCCchh
Confidence 77765 5888653
No 24
>PRK02113 putative hydrolase; Provisional
Probab=99.54 E-value=1.2e-13 Score=112.60 Aligned_cols=113 Identities=19% Similarity=0.308 Sum_probs=82.7
Q ss_pred eEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCC-cccEEEecCCCCcccCchHHHHhh--CCCCEEEcCCCCC-------
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGV-NLTTVLTTHHHWDHAGGNEKMKEM--VPGIKVYGGSLDN------- 82 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~--~p~~~i~~~~~~~------- 82 (220)
.||+|+. ++..+|||+|.. +...+.+.+. ++++||+||.|+||++|++.+... ....+||+++...
T Consensus 36 ~s~li~~--~~~~iLiD~G~g--~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~ 111 (252)
T PRK02113 36 TSALVET--EGARILIDCGPD--FREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRM 111 (252)
T ss_pred eEEEEEE--CCeEEEEECCch--HHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhC
Confidence 5789988 788999999943 2223333344 899999999999999999877532 2357888876422
Q ss_pred --------CC----CCcEEcCCCCEEEeCCceeEEEEeCCCCC-CCCEEEEEccCCCCCCeEEeCCcc
Q 027699 83 --------VK----GCTHQVENGDKFSIGAHVNVLSLHTPCHT-KGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 83 --------~~----~~~~~~~~g~~~~~g~~~~i~~~~~pgHt-~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
.+ .....+++|+.++++ +++++.+++. |+ ..+++|.+ + +++|+||+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~i~~~~~~-H~~~~~~gy~i--~----~i~y~~Dt~ 171 (252)
T PRK02113 112 PYCFVEHSYPGVPNIPLREIEPDRPFLVN-HTEVTPLRVM-HGKLPILGYRI--G----KMAYITDML 171 (252)
T ss_pred CeeeccCCCCCCcceeeEEcCCCCCEEEC-CeEEEEEEec-CCCccEEEEEe--C----CEEEccCCC
Confidence 00 123566788999999 9999999886 65 35778887 2 799999997
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.53 E-value=1.2e-13 Score=115.21 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=83.3
Q ss_pred CeEEEEceeCCe---eEEEEEeCCCCeEEEEcCCCh---------------HHHHHHHHHcC---CcccEEEecCCCCcc
Q 027699 1 MKIFHIPCLEDN---YAYLIIEETTKEAAVVDPVEP---------------EKIIEAAKQHG---VNLTTVLTTHHHWDH 59 (220)
Q Consensus 1 m~v~~~~~~~~n---~~~li~~~~~~~~iliD~g~~---------------~~~~~~l~~~~---~~i~~iiiTH~H~DH 59 (220)
|++..+++.+.. +|++|.. ++..||||||.. ..+.+.+.... .++|+||+||.|+||
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~--~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DH 78 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVET--KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDH 78 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEE--CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCcccc
Confidence 788888764433 6999998 889999999922 22333333322 289999999999999
Q ss_pred cCchHHHH-----hhCCCCEEEcCCCCC-------C-----------------CCCcEEcCCCCEEEeCCceeEEEEeCC
Q 027699 60 AGGNEKMK-----EMVPGIKVYGGSLDN-------V-----------------KGCTHQVENGDKFSIGAHVNVLSLHTP 110 (220)
Q Consensus 60 ~gg~~~l~-----~~~p~~~i~~~~~~~-------~-----------------~~~~~~~~~g~~~~~g~~~~i~~~~~p 110 (220)
++++..+. +.+ ..++|...... . ......+.+++.+.++ ++++++....
T Consensus 79 i~g~~~~~y~~~~~~~-~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-~~~V~~~~~v 156 (298)
T PRK04286 79 HTPFYEDPYELSDEEI-PKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-GTTIEFSPPV 156 (298)
T ss_pred CCCccccccccccccc-hHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-CEEEEEeccC
Confidence 98876541 111 12333321111 0 0022446778999999 9999976433
Q ss_pred CCCC--CCEEE----EEccCCCCCCeEEeCCcc
Q 027699 111 CHTK--GHISY----YVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 111 gHt~--~~~~~----~~~~~~~~~~ilfsGD~~ 137 (220)
.|.. .+++| .+..++. +++|+||+.
T Consensus 157 ~H~~~~~~~Gy~i~~ri~~gg~--~~~~~gDt~ 187 (298)
T PRK04286 157 PHGADGSKLGYVIMVRISDGDE--SFVFASDVQ 187 (298)
T ss_pred CCCCCCCccceEEEEEEEeCCE--EEEEECCCC
Confidence 4753 24444 3344444 899999998
No 26
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.52 E-value=3.2e-13 Score=111.35 Aligned_cols=130 Identities=21% Similarity=0.192 Sum_probs=103.4
Q ss_pred eEEEEceeCCeeEEEEEeCCCCeEEEEcCCC---hHHHHHHHHHcCC-cccEEEecCCCCcccCchHHHHhhCCCCEEEc
Q 027699 2 KIFHIPCLEDNYAYLIIEETTKEAAVVDPVE---PEKIIEAAKQHGV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYG 77 (220)
Q Consensus 2 ~v~~~~~~~~n~~~li~~~~~~~~iliD~g~---~~~~~~~l~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~ 77 (220)
++..+++++.- +.+++. ++..+++|+|. ...++.+|++.|+ +||.+|+||.|.||+||+..+.+.++--++++
T Consensus 45 ~~~~lDvGqg~-a~li~~--~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i 121 (293)
T COG2333 45 KVHMLDVGQGL-ATLIRS--EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWI 121 (293)
T ss_pred eEEEEEcCCCe-EEEEee--CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEE
Confidence 56777778887 788887 66699999994 4678999999999 69999999999999999999999654344555
Q ss_pred CCCCCC---------CCCcEEcCCCCEEEeCCceeEEEEeCCCC-----CCCCEEEEEccCCCCCCeEEeCCcc
Q 027699 78 GSLDNV---------KGCTHQVENGDKFSIGAHVNVLSLHTPCH-----TKGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 78 ~~~~~~---------~~~~~~~~~g~~~~~g~~~~i~~~~~pgH-----t~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
...... .........|+.+.++ +..++++..++. ...|+++++..++. +++|+||+-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~--s~LlTGD~e 192 (293)
T COG2333 122 YAGSDSTSTFVLRDAGIPVRSCKAGDSWQWG-GVVFQVLSPVGGVSDDLNNDSCVLRVTFGGN--SFLLTGDLE 192 (293)
T ss_pred eCCCCccchhhhhhcCCceeccccCceEEEC-CeEEEEEcCCccccccccCcceEEEEEeCCe--eEEEecCCC
Confidence 443321 2445667889999999 999999877643 35688999988766 899999998
No 27
>PRK02126 ribonuclease Z; Provisional
Probab=99.51 E-value=1.8e-13 Score=115.62 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=79.6
Q ss_pred EEEceeCCeeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcC-CcccEEEecCCCCcccCchHHHHhhC----CCCEEEcC
Q 027699 4 FHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHG-VNLTTVLTTHHHWDHAGGNEKMKEMV----PGIKVYGG 78 (220)
Q Consensus 4 ~~~~~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~-~~i~~iiiTH~H~DH~gg~~~l~~~~----p~~~i~~~ 78 (220)
.+.+++.+| ||++....++..+|||||. +.+ +...+ .+|++||+||.|.||++|++.|...+ +.++||++
T Consensus 9 ~~~g~~~dn-~~~l~~~~~~~~iLiD~G~---~~~-l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp 83 (334)
T PRK02126 9 LVNGPFDDP-GLYVDFLFERRALLFDLGD---LHH-LPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGP 83 (334)
T ss_pred EecCCCCCc-EEEEEECCCCeEEEEcCCC---HHH-HhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEEC
Confidence 456678889 7777764458899999996 333 33334 38999999999999999999887654 34788887
Q ss_pred CCCC------CC-------------CCcE--E--------------------------cCCCCEEEeCCceeEEEEeCCC
Q 027699 79 SLDN------VK-------------GCTH--Q--------------------------VENGDKFSIGAHVNVLSLHTPC 111 (220)
Q Consensus 79 ~~~~------~~-------------~~~~--~--------------------------~~~g~~~~~g~~~~i~~~~~pg 111 (220)
+... .. .... . ..++..+..+ +++|+++++.
T Consensus 84 ~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~a~~~~- 161 (334)
T PRK02126 84 PGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEP-WFRVRAAFLD- 161 (334)
T ss_pred HHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCC-CEEEEEEEcc-
Confidence 6433 00 0000 0 1134446667 8999999886
Q ss_pred CCCCCEEEEEcc
Q 027699 112 HTKGHISYYVTG 123 (220)
Q Consensus 112 Ht~~~~~~~~~~ 123 (220)
|+..+++|.+..
T Consensus 162 H~vp~~gy~~~e 173 (334)
T PRK02126 162 HGIPCLAFALEE 173 (334)
T ss_pred CCCceeEEEEEe
Confidence 888899998874
No 28
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.50 E-value=2.1e-13 Score=114.25 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=75.3
Q ss_pred eEEEEEeCC--CCeEEEEcCCChHHHHHHHHHcCC---cccEEEecCCCCcccCchHHHHhh------CCCCEEEcCCCC
Q 027699 13 YAYLIIEET--TKEAAVVDPVEPEKIIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEM------VPGIKVYGGSLD 81 (220)
Q Consensus 13 ~~~li~~~~--~~~~iliD~g~~~~~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~------~p~~~i~~~~~~ 81 (220)
.||+|...+ .+..+|||||.+ ....+.+.+. +|++||+||.|+||++|++.|... ....+||+++..
T Consensus 18 s~~lv~~~~~~~~~~iLiD~G~g--~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~ 95 (303)
T TIGR02649 18 TAILLNLQHPTQSGLWLFDCGEG--TQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGI 95 (303)
T ss_pred cEEEEEccCCCCCCEEEEECCcc--HHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhH
Confidence 488887521 146899999943 2334444443 799999999999999999876532 124789988753
Q ss_pred C---------------CCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEcc
Q 027699 82 N---------------VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTG 123 (220)
Q Consensus 82 ~---------------~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~ 123 (220)
. .+.....+.+++.+..+ +++++.+++. |+..+++|.+..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~v~~~~~~-H~~~~~gy~i~~ 150 (303)
T TIGR02649 96 REFVETALRISGSWTDYPLEIVEIGAGEILDDG-LRKVTAYPLE-HPLECYGYRIEE 150 (303)
T ss_pred HHHHHHHHHhcccccCCceEEEEcCCCceEecC-CeEEEEEEcc-CccceEEEEEec
Confidence 2 01122445667788888 8888888875 888899999875
No 29
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.48 E-value=5.2e-13 Score=111.62 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=81.9
Q ss_pred eEEEEEeCCCCeEEEEcCCChHHHHHHHHHc-------C--C-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEKIIEAAKQH-------G--V-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN 82 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~~~~~l~~~-------~--~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~ 82 (220)
.|++|... ++..||||+| ..+..++.+. | . ++++||+||.|+||+.|+..|+... .++||+++...
T Consensus 40 ss~li~~~-g~~~iLiD~G--~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~-~l~Vyg~~~~~ 115 (302)
T PRK05184 40 SSIAVSAD-GEDWVLLNAS--PDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQ-PFPVYATPAVL 115 (302)
T ss_pred cEEEEEcC-CCEEEEEECC--hhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCC-CeEEEeCHHHH
Confidence 58888762 3346999999 3333344443 2 2 6999999999999999999887654 68899886432
Q ss_pred -----C-C----------CCcEEcCCCCEEEeC--CceeEEEEeCCC------------CCCCCEEEEEc--cCCCCCCe
Q 027699 83 -----V-K----------GCTHQVENGDKFSIG--AHVNVLSLHTPC------------HTKGHISYYVT--GKEGEDPA 130 (220)
Q Consensus 83 -----~-~----------~~~~~~~~g~~~~~g--~~~~i~~~~~pg------------Ht~~~~~~~~~--~~~~~~~i 130 (220)
. + .....+..++.++++ ++++|+.++++. |...+++|.+. ..++ ++
T Consensus 116 ~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~--~~ 193 (302)
T PRK05184 116 EDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGK--RL 193 (302)
T ss_pred HHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCc--EE
Confidence 0 0 012456667777773 268899988851 45668999995 4333 69
Q ss_pred EEeCCcc
Q 027699 131 VFTGDTL 137 (220)
Q Consensus 131 lfsGD~~ 137 (220)
+|++|+-
T Consensus 194 ~y~tD~~ 200 (302)
T PRK05184 194 FYAPGLA 200 (302)
T ss_pred EEECCCC
Confidence 9997763
No 30
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=117.95 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=97.0
Q ss_pred eEEEEcee---CCeeEEEEEeCCCCeEEEEcCCC---h--HHHHHHHHH--cC-CcccEEEecCCCCcccCchHHHHhhC
Q 027699 2 KIFHIPCL---EDNYAYLIIEETTKEAAVVDPVE---P--EKIIEAAKQ--HG-VNLTTVLTTHHHWDHAGGNEKMKEMV 70 (220)
Q Consensus 2 ~v~~~~~~---~~n~~~li~~~~~~~~iliD~g~---~--~~~~~~l~~--~~-~~i~~iiiTH~H~DH~gg~~~l~~~~ 70 (220)
+|+.++.+ +.+ |+++.. .+..||+|||. . ......+.. .. ..+|+|++||.|.||+|-++.|-+.-
T Consensus 182 Rvt~LGg~~EVGRS-a~lv~T--~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYg 258 (637)
T COG1782 182 RVTALGGFREVGRS-ALLVST--PESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYG 258 (637)
T ss_pred EEEeeccchhccce-eEEEec--CCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcC
Confidence 56667665 445 999988 77889999991 1 222222221 11 17999999999999999999887653
Q ss_pred CCCEEEcCCCCC--------------------CC----------CCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEE
Q 027699 71 PGIKVYGGSLDN--------------------VK----------GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYY 120 (220)
Q Consensus 71 p~~~i~~~~~~~--------------------~~----------~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~ 120 (220)
-+-+||+.+.+. .+ ....+++-|+.-++..++++++++. ||..||.+..
T Consensus 259 y~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~~H 337 (637)
T COG1782 259 YDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAMAH 337 (637)
T ss_pred CCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcceeeE
Confidence 367999998876 00 1235666777777766888998776 8999999998
Q ss_pred EccCCCCCCeEEeCCcc
Q 027699 121 VTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 121 ~~~~~~~~~ilfsGD~~ 137 (220)
+.-+++.-+++||||.-
T Consensus 338 lHIGdGlyNi~yTGDfk 354 (637)
T COG1782 338 LHIGDGLYNIVYTGDFK 354 (637)
T ss_pred EEecCCceeEEEecccc
Confidence 88776656899999987
No 31
>PRK00055 ribonuclease Z; Reviewed
Probab=99.45 E-value=4.7e-13 Score=109.86 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=57.5
Q ss_pred CeEEEEceeCC-------eeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCC---cccEEEecCCCCcccCchHHHHhhC
Q 027699 1 MKIFHIPCLED-------NYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEMV 70 (220)
Q Consensus 1 m~v~~~~~~~~-------n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~~ 70 (220)
||++.++..+. ++|++|.. ++..+|||||.. ....+.+.+. ++++||+||.|+||++|++.+...+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~--~~~~iLiD~G~g--~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~ 77 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRL--GGELFLFDCGEG--TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTR 77 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEE--CCcEEEEECCHH--HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHh
Confidence 88999998753 55999988 678999999943 3344444443 7999999999999999998776421
Q ss_pred ------CCCEEEcCCC
Q 027699 71 ------PGIKVYGGSL 80 (220)
Q Consensus 71 ------p~~~i~~~~~ 80 (220)
...+||+++.
T Consensus 78 ~~~~~~~~l~iy~p~~ 93 (270)
T PRK00055 78 SLSGRTEPLTIYGPKG 93 (270)
T ss_pred hhcCCCceEEEECCcc
Confidence 2467888765
No 32
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.7e-13 Score=117.29 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=89.1
Q ss_pred eEEEEEeCCCCeEEEEcCCChHHHH-HHHHHc-CC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC-------
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEKII-EAAKQH-GV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN------- 82 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~~~-~~l~~~-~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~------- 82 (220)
.|.++.. ++..+++|||...... ....-. .. ++|++++||.|.||+|+++.+....-..+||+.+.+.
T Consensus 15 s~~~l~~--~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l 92 (427)
T COG1236 15 SCVLLET--GGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLL 92 (427)
T ss_pred EEEEEEE--CCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHH
Confidence 3888888 7789999999322111 111111 11 5899999999999999999887642247888887665
Q ss_pred -----CC-----------------CCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc
Q 027699 83 -----VK-----------------GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 83 -----~~-----------------~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
.. ...+.+.-++.++++ ++++++++. ||.+|+.++.+...++ +++||||.-
T Consensus 93 ~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~A-GHilGsa~~~le~~~~--~ilytGD~~ 165 (427)
T COG1236 93 GDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNA-GHILGSAAILLEVDGG--RILYTGDVK 165 (427)
T ss_pred HHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecC-CCccceeEEEEEeCCc--eEEEEeccC
Confidence 11 123457889999999 899998887 8999999999997765 799999987
No 33
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.44 E-value=1.1e-12 Score=109.47 Aligned_cols=120 Identities=11% Similarity=0.181 Sum_probs=85.2
Q ss_pred eeEEEEEeCCCCeEEEEcCCChHHHHHHHHHc-------CC---cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCC
Q 027699 12 NYAYLIIEETTKEAAVVDPVEPEKIIEAAKQH-------GV---NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLD 81 (220)
Q Consensus 12 n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~-------~~---~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 81 (220)
.++++|... ++..||||+| ..+..++... +. +|++||+||.|.||+.|+..|++.. .++||+++.+
T Consensus 38 rss~ll~~~-g~~~iLID~G--pd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~t 113 (302)
T TIGR02108 38 QSSIAVSAD-GERWVLLNAS--PDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEMV 113 (302)
T ss_pred ccEEEEEeC-CCEEEEEECC--HHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHHH
Confidence 357788652 4568999999 3333333333 23 7999999999999999999998765 6999998765
Q ss_pred C--C------C----C--CcEEcCCCCEEEeCC----ceeEEEEeCCC-------C------CCCCEEEEEccC--CCCC
Q 027699 82 N--V------K----G--CTHQVENGDKFSIGA----HVNVLSLHTPC-------H------TKGHISYYVTGK--EGED 128 (220)
Q Consensus 82 ~--~------~----~--~~~~~~~g~~~~~g~----~~~i~~~~~pg-------H------t~~~~~~~~~~~--~~~~ 128 (220)
. . . . ....++.++.+.++. +++|+.+++++ | ..++++|.+..+ ++
T Consensus 114 ~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~-- 191 (302)
T TIGR02108 114 LQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGK-- 191 (302)
T ss_pred HHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCc--
Confidence 4 1 0 0 113456677776641 48899999871 3 246899999875 44
Q ss_pred CeEEeCCcc
Q 027699 129 PAVFTGDTL 137 (220)
Q Consensus 129 ~ilfsGD~~ 137 (220)
+++|++|+-
T Consensus 192 ~~~y~tD~g 200 (302)
T TIGR02108 192 RLFYIPGCA 200 (302)
T ss_pred EEEEECCCC
Confidence 899999996
No 34
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.38 E-value=6.9e-13 Score=108.74 Aligned_cols=131 Identities=16% Similarity=0.245 Sum_probs=94.3
Q ss_pred CeEEEEceeCC--eeEEEEEeCCCCeEEEEcCC------ChHHHHH--HHHHcCC---cccEEEecCCCCcccCchHHHH
Q 027699 1 MKIFHIPCLED--NYAYLIIEETTKEAAVVDPV------EPEKIIE--AAKQHGV---NLTTVLTTHHHWDHAGGNEKMK 67 (220)
Q Consensus 1 m~v~~~~~~~~--n~~~li~~~~~~~~iliD~g------~~~~~~~--~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~ 67 (220)
|++++++-.++ ..|.|+.- +++.|++||| +..++.. ++...|. -||.|++||+|.||+|+++.+.
T Consensus 4 i~v~pLGAGQdvGrSCilvsi--~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 4 IKVTPLGAGQDVGRSCILVSI--GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred ceEEeccCCcccCceEEEEEE--CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 46677765533 23888888 8999999999 2222222 2333333 6899999999999999999998
Q ss_pred hh--CCCCEEEcCCCCC----------------CC---------------CCcEEcCCCCEEEeCCceeEEEEeCCCCCC
Q 027699 68 EM--VPGIKVYGGSLDN----------------VK---------------GCTHQVENGDKFSIGAHVNVLSLHTPCHTK 114 (220)
Q Consensus 68 ~~--~p~~~i~~~~~~~----------------~~---------------~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~ 114 (220)
+. | +-+||++-.+. .. ..+..+.-.+++.++.++.|+.+.. ||-.
T Consensus 82 Ev~GY-~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVL 159 (501)
T KOG1136|consen 82 EVVGY-DGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVL 159 (501)
T ss_pred hhhCC-CCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-cccc
Confidence 75 4 67888876554 00 0123444556777765788888876 8999
Q ss_pred CCEEEEEccCCCCCCeEEeCCcc
Q 027699 115 GHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 115 ~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
|..+|++.-++. .++|+||.-
T Consensus 160 GAaMf~ikvGd~--svvYTGDYn 180 (501)
T KOG1136|consen 160 GAAMFYIKVGDQ--SVVYTGDYN 180 (501)
T ss_pred ceeEEEEEecce--eEEEecCcc
Confidence 999999987765 899999976
No 35
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.37 E-value=7.7e-12 Score=99.84 Aligned_cols=68 Identities=26% Similarity=0.502 Sum_probs=60.3
Q ss_pred eeEEEEEeCCCCeEEEEcCC-ChHHHHHHHHHcCC---cccEEEecCCCCcccCchHHHHhhC-CCCEEEcCCCC
Q 027699 12 NYAYLIIEETTKEAAVVDPV-EPEKIIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEMV-PGIKVYGGSLD 81 (220)
Q Consensus 12 n~~~li~~~~~~~~iliD~g-~~~~~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~~-p~~~i~~~~~~ 81 (220)
.+|+||+. ++..||+|+| ++..++..++.+|. ++|+|++||.|+||+||+.++.+.. |+.++|+|+..
T Consensus 22 GfS~LVE~--~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 22 GFSALVED--EGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred ceEEEEEc--CCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence 46899998 7889999999 88889999999887 7999999999999999999887754 88999998754
No 36
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.32 E-value=8.1e-13 Score=103.06 Aligned_cols=109 Identities=20% Similarity=0.324 Sum_probs=76.4
Q ss_pred EEEEcCCChHH---HHHHHHHcCC---cccEEEecCCCCcccCchHHHHhh---CCCCEEEcCCCCC---C---------
Q 027699 25 AAVVDPVEPEK---IIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEM---VPGIKVYGGSLDN---V--------- 83 (220)
Q Consensus 25 ~iliD~g~~~~---~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~---~p~~~i~~~~~~~---~--------- 83 (220)
.+|||||.... +...+..... ++++|++||.|.||+.|+..+... .+. ++|+++... .
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~ 80 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDL 80 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTT
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccc
Confidence 59999995433 2223332211 799999999999999997666543 333 888876432 0
Q ss_pred -----CCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEE----EEEccCCCCCCeEEeCCccc
Q 027699 84 -----KGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHIS----YYVTGKEGEDPAVFTGDTLY 138 (220)
Q Consensus 84 -----~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~----~~~~~~~~~~~ilfsGD~~~ 138 (220)
......+.+++.++++ ++++++++++ |..+..+ |+++..+. +++|+||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~--~i~~~gD~~~ 140 (194)
T PF12706_consen 81 YPEEDNFDIIEISPGDEFEIG-DFRITPFPAN-HGPPSYGGNKGFVIEPDGK--KIFYSGDTNY 140 (194)
T ss_dssp CCTTSGEEEEEECTTEEEEET-TEEEEEEEEE-SSSCCEEECCEEEEEETTE--EEEEETSSSS
T ss_pred cccccceeEEEeccCceEEec-eEEEEEEecc-ccccccccCceEEEecCCc--ceEEeeccch
Confidence 0123556778899999 9999999874 8888877 88886655 8999999994
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.28 E-value=1.9e-11 Score=104.01 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=85.5
Q ss_pred EEceeCCeeEEEEEeCCCCeEEEEcC--CChH-----H-------HHHH---------HHHc-------CC-cccEEEec
Q 027699 5 HIPCLEDNYAYLIIEETTKEAAVVDP--VEPE-----K-------IIEA---------AKQH-------GV-NLTTVLTT 53 (220)
Q Consensus 5 ~~~~~~~n~~~li~~~~~~~~iliD~--g~~~-----~-------~~~~---------l~~~-------~~-~i~~iiiT 53 (220)
.+-+++++ +++|+.+ ++..||||+ +.+. . .... ++.. .+ +||+|++|
T Consensus 39 ~~~wlG~a-~~li~~~-~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~IDaVLiT 116 (355)
T PRK11709 39 AMWWLGCT-GIWLKTE-GGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREIDAVLAT 116 (355)
T ss_pred EEEEecce-EEEEEcC-CCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCCCEEEEC
Confidence 34567888 8899864 678999996 2110 0 0010 1111 12 79999999
Q ss_pred CCCCcccC--chHHHHhhC-CCCEEEcCCCCC-------C-CCCcEEcCCCCEEEeCCceeEEEEeC---------C-CC
Q 027699 54 HHHWDHAG--GNEKMKEMV-PGIKVYGGSLDN-------V-KGCTHQVENGDKFSIGAHVNVLSLHT---------P-CH 112 (220)
Q Consensus 54 H~H~DH~g--g~~~l~~~~-p~~~i~~~~~~~-------~-~~~~~~~~~g~~~~~g~~~~i~~~~~---------p-gH 112 (220)
|.|.||+. .+..+.+.+ +++.++++.... . ......++.|+++.++ +++|++++. | .|
T Consensus 117 H~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig-~v~It~lpa~h~~~~i~~p~~h 195 (355)
T PRK11709 117 HDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVK-DIKIHALDSFDRTALVTLPADG 195 (355)
T ss_pred CCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEEC-CEEEEEEecccccccccccccc
Confidence 99999995 345555544 357777765432 1 1235678899999999 999998866 2 12
Q ss_pred CC-----------CCEEEEEccCCCCCCeEEeCCccc
Q 027699 113 TK-----------GHISYYVTGKEGEDPAVFTGDTLY 138 (220)
Q Consensus 113 t~-----------~~~~~~~~~~~~~~~ilfsGD~~~ 138 (220)
+. ..++|++..+++ +++|+||+.|
T Consensus 196 ~~~~~~~~~d~~~~~~gyvie~~~~--tvy~sGDT~~ 230 (355)
T PRK11709 196 KAAGGVLPDDMDRRAVNYLFKTPGG--NIYHSGDSHY 230 (355)
T ss_pred ccccccccccCCcceEEEEEEeCCe--EEEEeCCCCc
Confidence 21 247888876655 8999999985
No 38
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.19 E-value=4e-11 Score=99.76 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=54.8
Q ss_pred CeEEEEceeCC-------eeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCC---cccEEEecCCCCcccCchHHHHhh-
Q 027699 1 MKIFHIPCLED-------NYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEM- 69 (220)
Q Consensus 1 m~v~~~~~~~~-------n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~- 69 (220)
|+++.++.++. ..+++|.. ++..+||||| +....++...+. +|++|||||.|.||+.|++.+...
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~--~~~~~L~DcG--eGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~ 77 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRL--EGEKFLFDCG--EGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSR 77 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEe--CCeeEEEECC--HhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHh
Confidence 78888887544 24778887 7888999999 334444554444 789999999999999999876442
Q ss_pred -----CCCCEEEcCCC
Q 027699 70 -----VPGIKVYGGSL 80 (220)
Q Consensus 70 -----~p~~~i~~~~~ 80 (220)
.....||.+..
T Consensus 78 ~~~~~~~~l~iygP~g 93 (292)
T COG1234 78 SFRGRREPLKIYGPPG 93 (292)
T ss_pred hccCCCCceeEECCcc
Confidence 12367888853
No 39
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.15 E-value=1.4e-10 Score=88.46 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=68.1
Q ss_pred EceeCCeeEEEEEeCCCCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCCCCC
Q 027699 6 IPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNVKG 85 (220)
Q Consensus 6 ~~~~~~n~~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~ 85 (220)
+.+++.+ ||+|+. ++..||+||+.. .........++|+|++||.|.||+..-. +.+. ..
T Consensus 2 It~lgha-~~~ie~--~g~~iliDP~~~---~~~~~~~~~~~D~IlisH~H~DH~~~~~-l~~~--------------~~ 60 (163)
T PF13483_consen 2 ITWLGHA-SFLIET--GGKRILIDPWFS---SVGYAPPPPKADAILISHSHPDHFDPET-LKRL--------------DR 60 (163)
T ss_dssp EEEEETT-EEEEEE--TTEEEEES--TT---T--T-TSS-B-SEEEESSSSTTT-CCCC-CCCH--------------HT
T ss_pred EEEEEee-EEEEEE--CCEEEEECCCCC---ccCcccccCCCCEEEECCCccccCChhH-hhhc--------------cc
Confidence 5677888 999999 899999999832 0011111248999999999999987621 1111 11
Q ss_pred CcEEcCCCCEEEeCCceeEEEEeCC-----CCCC-CCEEEEEccCCCCCCeEEeCCcc
Q 027699 86 CTHQVENGDKFSIGAHVNVLSLHTP-----CHTK-GHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 86 ~~~~~~~g~~~~~g~~~~i~~~~~p-----gHt~-~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
....+..++.++++ ++.++.++.. ++.. ..++|+++.++. ++++.||+.
T Consensus 61 ~~~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~--~i~~~Gd~~ 115 (163)
T PF13483_consen 61 DIHVVAPGGEYRFG-GFKITAVPAYHDGPGGHPRGENVGYLIEVGGV--TIYHAGDTG 115 (163)
T ss_dssp SSEEE-TTEEEECT-TEEEEEEEEEE-STGTS-TTCCEEEEEEETTE--EEEE-TT--
T ss_pred ccEEEccceEEEEe-eeEEEEEeeeccccCCCCcCCeEEEEEEeCCC--EEEEECCCc
Confidence 23445557889999 9988887663 3333 378898888665 899999998
No 40
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.01 E-value=6.2e-10 Score=95.44 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=105.7
Q ss_pred eEEEEceeCCeeEEEEEeCCCCeEEEEcCC-ChHHHHHHH----HHcCC-cccEEEecCCCCcccCchHHHHhh----CC
Q 027699 2 KIFHIPCLEDNYAYLIIEETTKEAAVVDPV-EPEKIIEAA----KQHGV-NLTTVLTTHHHWDHAGGNEKMKEM----VP 71 (220)
Q Consensus 2 ~v~~~~~~~~n~~~li~~~~~~~~iliD~g-~~~~~~~~l----~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~----~p 71 (220)
+|+++..+.-.+.-+|+. +...|+|||- .++...+.+ +..|. +|.+||.||.|.||.||+.-+.+. ..
T Consensus 116 ~iYQVRG~DisNITfveG--dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sG 193 (655)
T COG2015 116 GIYQVRGFDISNITFVEG--DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSG 193 (655)
T ss_pred ceeEeecccccceEEEcC--CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccC
Confidence 467777777666777877 7789999997 222222222 23344 899999999999999998766432 23
Q ss_pred CCEEEcCCCCC-------------------------------------------------CCCCcEEcCCCCEEEeCCce
Q 027699 72 GIKVYGGSLDN-------------------------------------------------VKGCTHQVENGDKFSIGAHV 102 (220)
Q Consensus 72 ~~~i~~~~~~~-------------------------------------------------~~~~~~~~~~g~~~~~g~~~ 102 (220)
.++|+++.... ..+.....+.|+++.++ |+
T Consensus 194 kV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iD-GV 272 (655)
T COG2015 194 KVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTID-GV 272 (655)
T ss_pred ceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEe-ce
Confidence 57788776432 11122344678999999 99
Q ss_pred eEEEEeCCC-CCCCCEEEEEccCCCCCCeE-EeCCcccccccc-chhhccCCChHHHHHHHHHHHHh
Q 027699 103 NVLSLHTPC-HTKGHISYYVTGKEGEDPAV-FTGDTLYTVKNL-LFALTVEPSNVKLQQKLAWAQNQ 166 (220)
Q Consensus 103 ~i~~~~~pg-Ht~~~~~~~~~~~~~~~~il-fsGD~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 166 (220)
++++..||| .+|--+-+|++.- ++| .+-++..+..|+ ...+..-++...|..++..-..+
T Consensus 273 ~~~Fq~tPgtEaPAEM~~y~P~~----kaL~mAEnat~~lHNlytlRGa~vRD~~~Ws~ylneal~~ 335 (655)
T COG2015 273 EFEFQMTPGTEAPAEMHFYFPRL----KALCMAENATHTLHNLYTLRGAEVRDAKAWSKYLNEALDM 335 (655)
T ss_pred EEEEeeCCCCCCcHHHhhhhhHH----HHHHHHhhccccceeeeecccceecchHHHHHHHHHHHHH
Confidence 999999999 8899999999976 444 444444333333 23333346667777777654443
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.99 E-value=3.6e-09 Score=86.61 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=82.5
Q ss_pred EEEceeCCeeEEEEEeCCCCeEEEEcCCChHHH-HH-----HHHHcCCcccEEEecCCCCcccCchHHHHhhCC-CCEEE
Q 027699 4 FHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKI-IE-----AAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVP-GIKVY 76 (220)
Q Consensus 4 ~~~~~~~~n~~~li~~~~~~~~iliD~g~~~~~-~~-----~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p-~~~i~ 76 (220)
..+.+++++ |++|+. ++..|||||...... .. .....-.++|+|++||.|.||++.........+ ...++
T Consensus 7 m~itwlGha-~~lie~--~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~ 83 (258)
T COG2220 7 MKITWLGHA-AFLIET--GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVV 83 (258)
T ss_pred ceEEEecce-EEEEEE--CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEE
Confidence 345667778 999999 789999999721111 00 011111269999999999999998765544422 34455
Q ss_pred cCCCCC--------CCCCcEEcCCCCEEEeCCceeEEEEe---CCC-CCC--------CCEEEEEccCCCCCCeEEeCCc
Q 027699 77 GGSLDN--------VKGCTHQVENGDKFSIGAHVNVLSLH---TPC-HTK--------GHISYYVTGKEGEDPAVFTGDT 136 (220)
Q Consensus 77 ~~~~~~--------~~~~~~~~~~g~~~~~g~~~~i~~~~---~pg-Ht~--------~~~~~~~~~~~~~~~ilfsGD~ 136 (220)
.+.... .......+..++.++++ +.++++.. .+. +.+ ...+|++...+. +++++||+
T Consensus 84 ~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~--~iyh~GDt 160 (258)
T COG2220 84 VPLGAGDLLIRDGVEAERVHELGWGDVIELG-DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGG--RVYHAGDT 160 (258)
T ss_pred eHHHHHHHHHhcCCCcceEEeecCCceEEec-CcEEEEEEeecccccccCCCCccccCCceEEEEEeCCc--eEEeccCc
Confidence 554431 11224556678899998 87754443 332 333 367788877665 89999999
Q ss_pred cc
Q 027699 137 LY 138 (220)
Q Consensus 137 ~~ 138 (220)
-|
T Consensus 161 ~~ 162 (258)
T COG2220 161 GY 162 (258)
T ss_pred cH
Confidence 74
No 42
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.3e-09 Score=86.83 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=85.0
Q ss_pred EEEEEeCCCCeEEEEcCCChHHHHHHHHHcCC---cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCCC--CCCcE
Q 027699 14 AYLIIEETTKEAAVVDPVEPEKIIEAAKQHGV---NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNV--KGCTH 88 (220)
Q Consensus 14 ~~li~~~~~~~~iliD~g~~~~~~~~l~~~~~---~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~--~~~~~ 88 (220)
.-++.+ ++..+++|+|.+ .+.+.+. .|+.+++||.|++|++++..+ |..+++.+.-+.. .....
T Consensus 97 ~tl~~d--~~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f----~~sp~l~~s~e~~gr~~~pt 165 (302)
T KOG4736|consen 97 ITLVVD--GGDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLF----PQSPILYHSMEYIGRHVTPT 165 (302)
T ss_pred cceeec--CCceEEEecCCc-----hhhhcCcChhhcceeEEeccCcccccccccc----cCCHHHhhhhhhcCCccChh
Confidence 335666 778899999844 5666666 899999999999999999874 3455555444432 22335
Q ss_pred EcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcccc
Q 027699 89 QVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLYT 139 (220)
Q Consensus 89 ~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~~~ 139 (220)
.++.+..+.++ -.+++..||||++.+++.++.......++.++||++..
T Consensus 166 ~l~e~~~~~l~--~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~ 214 (302)
T KOG4736|consen 166 ELDERPYLKLS--PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPR 214 (302)
T ss_pred hhccCCccccC--CceeEeeCCCCCCcceEEEEEeecccceEEEEeecccC
Confidence 56778888887 45788899999999999999876555589999999943
No 43
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.91 E-value=9.2e-10 Score=95.54 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=87.8
Q ss_pred EEEEcee---CCeeEEEEEeCCCCeEEEEcCCC-----hHHHHHHHHHcCC-cccEEEecCCCCcccCchHHHHhhC-CC
Q 027699 3 IFHIPCL---EDNYAYLIIEETTKEAAVVDPVE-----PEKIIEAAKQHGV-NLTTVLTTHHHWDHAGGNEKMKEMV-PG 72 (220)
Q Consensus 3 v~~~~~~---~~n~~~li~~~~~~~~iliD~g~-----~~~~~~~l~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~~-p~ 72 (220)
+++++.. +.+ |.+++. .|+.|+.|||. +-.-+.+...... .+|.+++||+|.||++.++++.++. -.
T Consensus 16 ~~pLGag~EVGRS-C~ile~--kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~ 92 (668)
T KOG1137|consen 16 FTPLGAGNEVGRS-CHILEY--KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFI 92 (668)
T ss_pred EEECCCCcccCce-EEEEEe--cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeecccc
Confidence 4555532 334 889998 89999999992 2222333344333 7899999999999999999986652 13
Q ss_pred CEEEcCCCCC---------------CCC---------------CcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEc
Q 027699 73 IKVYGGSLDN---------------VKG---------------CTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVT 122 (220)
Q Consensus 73 ~~i~~~~~~~---------------~~~---------------~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~ 122 (220)
-++++...+. ... ....++--++.+.. |+++..++ .||--|.++|.++
T Consensus 93 grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~-gIkf~p~~-aGhVlgacMf~ve 170 (668)
T KOG1137|consen 93 GRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN-GIKFWPYH-AGHVLGACMFMVE 170 (668)
T ss_pred ceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC-CeEEEeec-cchhhhheeeeee
Confidence 4555544433 000 11222333455667 88888887 5999999999999
Q ss_pred cCCCCCCeEEeCCcc
Q 027699 123 GKEGEDPAVFTGDTL 137 (220)
Q Consensus 123 ~~~~~~~ilfsGD~~ 137 (220)
-.+- +++|+||..
T Consensus 171 iagv--~lLyTGd~s 183 (668)
T KOG1137|consen 171 IAGV--RLLYTGDYS 183 (668)
T ss_pred eceE--EEEeccccc
Confidence 8766 899999998
No 44
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.81 E-value=4.5e-08 Score=77.86 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=80.3
Q ss_pred CeEEEEce--eC-CeeEEEEEeCCCCeEEEEcCCC---------------hHH---HHHHHHHcCCcccEEEecCCCCcc
Q 027699 1 MKIFHIPC--LE-DNYAYLIIEETTKEAAVVDPVE---------------PEK---IIEAAKQHGVNLTTVLTTHHHWDH 59 (220)
Q Consensus 1 m~v~~~~~--~~-~n~~~li~~~~~~~~iliD~g~---------------~~~---~~~~l~~~~~~i~~iiiTH~H~DH 59 (220)
|+|.++.. ++ .+.|.+|+. .+-.||||||. .+. ..+.+.+...+.+.|.+||.|.||
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet--~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDH 78 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVET--KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDH 78 (304)
T ss_pred Cceeeccccccchhhhhheeec--CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeecccc
Confidence 78888774 22 233566777 78899999991 112 222233333378889999999999
Q ss_pred cCch---------HHHHhhCCCCEEEcCCC-CC-----------------CCCCcEEcCCCCEEEeCCceeEEEEeCCCC
Q 027699 60 AGGN---------EKMKEMVPGIKVYGGSL-DN-----------------VKGCTHQVENGDKFSIGAHVNVLSLHTPCH 112 (220)
Q Consensus 60 ~gg~---------~~l~~~~p~~~i~~~~~-~~-----------------~~~~~~~~~~g~~~~~g~~~~i~~~~~pgH 112 (220)
..-. ..-.+.|.+-.+++-.. +. .......+.+|.++++| +..|++-+.--|
T Consensus 79 htPf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG-~t~IefS~pvpH 157 (304)
T COG2248 79 HTPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFG-GTVIEFSPPVPH 157 (304)
T ss_pred CCccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeC-CEEEEecCCCCC
Confidence 8651 11122333333333222 11 11234567899999999 999998644226
Q ss_pred CCC-C-----EEEEEccCCCCCCeEEeCCcc
Q 027699 113 TKG-H-----ISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 113 t~~-~-----~~~~~~~~~~~~~ilfsGD~~ 137 (220)
-++ + +++.+.+++. +++|+.|+-
T Consensus 158 G~eGskLGyVl~v~V~dg~~--~i~faSDvq 186 (304)
T COG2248 158 GREGSKLGYVLMVAVTDGKS--SIVFASDVQ 186 (304)
T ss_pred CCcccccceEEEEEEecCCe--EEEEccccc
Confidence 554 2 3444555444 899999986
No 45
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.77 E-value=1.4e-08 Score=83.63 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=36.0
Q ss_pred EEEEcCCChHHHHHHHHHcC-CcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCC
Q 027699 25 AAVVDPVEPEKIIEAAKQHG-VNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSL 80 (220)
Q Consensus 25 ~iliD~g~~~~~~~~l~~~~-~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~ 80 (220)
.++||+| ..+.....+.+ ..+++||+||.|+||+.|+..|++.+ ..+++....
T Consensus 42 ~~lid~g--~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~~~ 95 (269)
T COG1235 42 TLLIDAG--PDLRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVNPG 95 (269)
T ss_pred eEEEecC--hhHHhhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCcccccc
Confidence 4566665 22332323222 27999999999999999999999976 455555443
No 46
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.64 E-value=1.9e-07 Score=83.18 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=83.2
Q ss_pred eEEEEEeCCCCeEEEEcCCChHH----HHHHHHHcCCcccEEEecCCCCcccCchHHHHhh-CCCCEEEcCCCCC-----
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEK----IIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEM-VPGIKVYGGSLDN----- 82 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~----~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~-~p~~~i~~~~~~~----- 82 (220)
.||+++- ++..||||||..+. +...++..-..||+|++||..+-|+||+++.... +-+++||++-...
T Consensus 16 ~cyllqi--D~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m 93 (764)
T KOG1135|consen 16 LCYLLQI--DGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQM 93 (764)
T ss_pred ceEEEEE--cCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhh
Confidence 5999998 89999999993322 2333333333899999999999999999987654 3368899877654
Q ss_pred -----CC--------------------CCcEEcCCCCEEEeC---CceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeC
Q 027699 83 -----VK--------------------GCTHQVENGDKFSIG---AHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTG 134 (220)
Q Consensus 83 -----~~--------------------~~~~~~~~g~~~~~g---~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsG 134 (220)
.. .....++-.+...+. +|++|..++. ||++|...+.+...+. .++|+=
T Consensus 94 ~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k~~E--~ivYav 170 (764)
T KOG1135|consen 94 FMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISKVGE--DIVYAV 170 (764)
T ss_pred hHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEecCc--eEEEEE
Confidence 00 012234444555553 2557777765 8999998888876544 788887
Q ss_pred Ccc
Q 027699 135 DTL 137 (220)
Q Consensus 135 D~~ 137 (220)
|.=
T Consensus 171 d~N 173 (764)
T KOG1135|consen 171 DFN 173 (764)
T ss_pred ecc
Confidence 765
No 47
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.60 E-value=2.1e-07 Score=76.20 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=40.3
Q ss_pred EEEEEeCCCCeEEEEc-CCCh--HHHHHHHHHcCCcccEEEecCCCCcccCchHHHHh-h------CCCCEEEcCCCCC
Q 027699 14 AYLIIEETTKEAAVVD-PVEP--EKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKE-M------VPGIKVYGGSLDN 82 (220)
Q Consensus 14 ~~li~~~~~~~~iliD-~g~~--~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~-~------~p~~~i~~~~~~~ 82 (220)
+|++. ....||+| .|.+ ..+.+.+. .++.||+||.|.||++|++.+.- + -+...||.|+...
T Consensus 12 t~~~~---~~~~ilfD~ag~g~~~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~ 83 (277)
T TIGR02650 12 STIIY---SPEEIIFDAAEEGSSTLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGN 83 (277)
T ss_pred EEEEE---CchhheehhhcccchhHHhhhHh----hcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchh
Confidence 44444 34469999 7732 22333333 68899999999999999954432 1 1236789887643
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.08 E-value=7.4e-06 Score=71.46 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=67.2
Q ss_pred cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCC---------CCCCcEEcCCCCEEEeCCceeEEEEeCCCCCCCC
Q 027699 46 NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDN---------VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGH 116 (220)
Q Consensus 46 ~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~---------~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~ 116 (220)
...+-|+||+|.||..|+..- +...++|++..++ .....+.++-++.+.+. ++.+.++.. .|+||+
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~s---W~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~-~~~vt~ldA-nHCPGa 186 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKS---WSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIP-GIQVTLLDA-NHCPGA 186 (481)
T ss_pred ccceeeeeccccccccccccc---ccCCcccccccchhhhhhhcccChhhceeecCCCceeec-ceEEEEecc-ccCCCc
Confidence 678999999999999988642 2123489888765 22335667788889998 888887766 699999
Q ss_pred EEEEEccCCCCCCeEEeCCcccc
Q 027699 117 ISYYVTGKEGEDPAVFTGDTLYT 139 (220)
Q Consensus 117 ~~~~~~~~~~~~~ilfsGD~~~~ 139 (220)
++|+++...+ ..+|++||.=++
T Consensus 187 ~mf~F~~~~~-~~~lhtGDFR~s 208 (481)
T KOG1361|consen 187 VMFLFELSFG-PCILHTGDFRAS 208 (481)
T ss_pred eEEEeecCCC-ceEEecCCcccC
Confidence 9999986543 379999999743
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.06 E-value=3.4e-05 Score=65.19 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=35.9
Q ss_pred eEEEEEeCCCCeEEEEcCCChHH-HHHHHHHc---------------------------CCcccEEEecCCCCcccCchH
Q 027699 13 YAYLIIEETTKEAAVVDPVEPEK-IIEAAKQH---------------------------GVNLTTVLTTHHHWDHAGGNE 64 (220)
Q Consensus 13 ~~~li~~~~~~~~iliD~g~~~~-~~~~l~~~---------------------------~~~i~~iiiTH~H~DH~gg~~ 64 (220)
.+||+.....+..+-+|+|..-. +...+... ...|...+|||.|.||+.|+-
T Consensus 18 s~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLDHi~gLv 97 (335)
T PF02112_consen 18 SAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLDHIAGLV 97 (335)
T ss_pred ceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchhhHHHHH
Confidence 49999987678899999983211 11111110 005789999999999999985
Q ss_pred H
Q 027699 65 K 65 (220)
Q Consensus 65 ~ 65 (220)
.
T Consensus 98 i 98 (335)
T PF02112_consen 98 I 98 (335)
T ss_pred h
Confidence 3
No 50
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.05 E-value=4.7e-06 Score=75.23 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=35.5
Q ss_pred EEEEEeCCCCeEEEEcCCCh--HHHHHHHH-HcC----CcccEEEecCCCCcccCchHHHHh
Q 027699 14 AYLIIEETTKEAAVVDPVEP--EKIIEAAK-QHG----VNLTTVLTTHHHWDHAGGNEKMKE 68 (220)
Q Consensus 14 ~~li~~~~~~~~iliD~g~~--~~~~~~l~-~~~----~~i~~iiiTH~H~DH~gg~~~l~~ 68 (220)
+++|..+ ....||.|||.+ .++.+.-- +.. .++.+|++||.|+||..|+..+++
T Consensus 463 S~lv~i~-~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 463 SILVRID-SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred EEEEecc-CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHH
Confidence 6777763 344699999932 22222221 110 178899999999999999876654
No 51
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=97.10 E-value=0.0013 Score=53.37 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=51.8
Q ss_pred cccEEEecCCCCcccCchH----HHHhhCCCCEEEcCCCCC------------CC---------CCcEEcCCCCEEEeCC
Q 027699 46 NLTTVLTTHHHWDHAGGNE----KMKEMVPGIKVYGGSLDN------------VK---------GCTHQVENGDKFSIGA 100 (220)
Q Consensus 46 ~i~~iiiTH~H~DH~gg~~----~l~~~~p~~~i~~~~~~~------------~~---------~~~~~~~~g~~~~~g~ 100 (220)
.|..-+|||.|.||+.|+- .+.+.. .-.||+.+.+. .+ ...+.+++.+...+.
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt- 189 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLT- 189 (356)
T ss_pred hhhheEeccccccchhceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeee-
Confidence 6888999999999999973 333332 34567665443 11 112445565555544
Q ss_pred ceeEEEEeCC-CCC-----C-CCEEEEEccCCCCCCeEEeCCcc
Q 027699 101 HVNVLSLHTP-CHT-----K-GHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 101 ~~~i~~~~~p-gHt-----~-~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
-..+..++-| .|- | -|.+|++.+...+.-+++.||+-
T Consensus 190 ~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDve 233 (356)
T COG5212 190 LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVE 233 (356)
T ss_pred eeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCC
Confidence 2223333333 132 2 24566776653333689999998
No 52
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.68 E-value=0.0067 Score=48.88 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=50.4
Q ss_pred cccEEEecCCCCcccCchHH--HHhhCCCCEEEcCCCCC-------CCCCcEEcCCCCEE--EeCCceeEEEEeCCC-CC
Q 027699 46 NLTTVLTTHHHWDHAGGNEK--MKEMVPGIKVYGGSLDN-------VKGCTHQVENGDKF--SIGAHVNVLSLHTPC-HT 113 (220)
Q Consensus 46 ~i~~iiiTH~H~DH~gg~~~--l~~~~p~~~i~~~~~~~-------~~~~~~~~~~g~~~--~~g~~~~i~~~~~pg-Ht 113 (220)
+++.+++||.|+||...-.. +... ++.++.-+... -...+..+..+++. .-+ +-.+++..||. |+
T Consensus 132 ~~d~~~vsh~h~dhld~~~~~~~~~~--~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn-~~~~ti~~tPaqHw 208 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDADAVKKITDR--NPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKN-GKTYTIWCLPAQHW 208 (343)
T ss_pred CCceeccccccccccchHHHHhhhcc--CccceeehhhhhheecCCCCCceeEeeccchhceecC-CcEEEEEEcchhhh
Confidence 79999999999999865332 2222 23333322211 11123333344433 335 66788888886 75
Q ss_pred CCC----------EEEEEccCCCCCCeEEeCCccccc
Q 027699 114 KGH----------ISYYVTGKEGEDPAVFTGDTLYTV 140 (220)
Q Consensus 114 ~~~----------~~~~~~~~~~~~~ilfsGD~~~~~ 140 (220)
-+- .++.+...+. +++|+||+.|+.
T Consensus 209 ~~R~L~D~Nk~LW~sw~v~g~~n--rfffaGDTGyc~ 243 (343)
T KOG3798|consen 209 GQRGLFDRNKRLWSSWAVIGENN--RFFFAGDTGYCD 243 (343)
T ss_pred cccccccCCcceeeeeEEecCCc--eEEecCCCCccc
Confidence 321 2233322222 899999999654
No 53
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=96.48 E-value=0.016 Score=36.69 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCeEEEE-cCCChHHHHHHHHHcCC---cccEEEecCCC-CcccCc
Q 027699 13 YAYLIIEETTKEAAVV-DPVEPEKIIEAAKQHGV---NLTTVLTTHHH-WDHAGG 62 (220)
Q Consensus 13 ~~~li~~~~~~~~ili-D~g~~~~~~~~l~~~~~---~i~~iiiTH~H-~DH~gg 62 (220)
.|.++.. +++..|| ++| +...+.+.+.++ ++..||+|+.. ++++||
T Consensus 13 p~l~l~~--d~~rYlFGn~g--EGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF--DSRRYLFGNCG--EGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe--CCceEEeccCC--cHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 4677776 6688999 998 444455555544 89999999999 999987
No 54
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=95.41 E-value=0.24 Score=41.01 Aligned_cols=119 Identities=9% Similarity=0.052 Sum_probs=74.6
Q ss_pred EEEEEeCCCCeEEEEcCC-ChHHHHHHHHHc---CCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCCCC-----C
Q 027699 14 AYLIIEETTKEAAVVDPV-EPEKIIEAAKQH---GVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLDNV-----K 84 (220)
Q Consensus 14 ~~li~~~~~~~~iliD~g-~~~~~~~~l~~~---~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~-----~ 84 (220)
+-+|+-. +|..++..|- -.+.+.+.++++ +-+|++|+.--....|---+..++++||++++|+.+.... +
T Consensus 22 MTVVrL~-~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp 100 (285)
T PF14234_consen 22 MTVVRLS-DGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLP 100 (285)
T ss_pred EEEEEEC-CCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCc
Confidence 3345542 4667777776 446667777776 3389999997665568888999999999999999886431 0
Q ss_pred C------CcEEc-CCCCEEEeCCceeEEEEeC---CCCCCCCEEEEEccCCCCCCeEEeCCcc
Q 027699 85 G------CTHQV-ENGDKFSIGAHVNVLSLHT---PCHTKGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 85 ~------~~~~~-~~g~~~~~g~~~~i~~~~~---pgHt~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
. ....+ .......+++++..+.+.. ..|.-.-++|+-... +.|+..|++
T Consensus 101 ~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~S----kTLIvTDll 159 (285)
T PF14234_consen 101 LSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPS----KTLIVTDLL 159 (285)
T ss_pred hhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCC----CeEEhhhch
Confidence 0 01111 1111222322444444443 336666677776666 789999999
No 55
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=91.89 E-value=0.79 Score=40.75 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=56.4
Q ss_pred cccEEEecCCCCcccCchHHHHhh--CCCCEEEcCCCCC----------------------------------CC-----
Q 027699 46 NLTTVLTTHHHWDHAGGNEKMKEM--VPGIKVYGGSLDN----------------------------------VK----- 84 (220)
Q Consensus 46 ~i~~iiiTH~H~DH~gg~~~l~~~--~p~~~i~~~~~~~----------------------------------~~----- 84 (220)
.||.|++|..|. .-|++.+-+. | ..+||+.+.+. .+
T Consensus 96 tiDvILISNy~~--mlgLPfiTentGF-~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~ 172 (653)
T KOG1138|consen 96 TIDVILISNYMG--MLGLPFITENTGF-FGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKK 172 (653)
T ss_pred ceeEEEEcchhh--hcccceeecCCCc-eeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchh
Confidence 589999999986 7888887664 3 47888887654 00
Q ss_pred --------------------CCcEEcCCCCEEEeCCceeEEEEeCCCCCCCCEEEEEccCCCCCCeEEeCCcc
Q 027699 85 --------------------GCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTL 137 (220)
Q Consensus 85 --------------------~~~~~~~~g~~~~~g~~~~i~~~~~pgHt~~~~~~~~~~~~~~~~ilfsGD~~ 137 (220)
..++.+.-.+.+.+.+.+.++.+. .||+-|+.-+.+...++ ++.|..+..
T Consensus 173 ~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtpls-SG~~lGSsnW~I~t~ne--k~sYvS~Ss 242 (653)
T KOG1138|consen 173 AVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLS-SGYDLGSSNWLINTPNE--KLSYVSGSS 242 (653)
T ss_pred hccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEecc-ccccccccceEEecCCc--ceEEEecCc
Confidence 012233444566654133444443 48999999998887665 777777665
No 56
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=91.34 E-value=0.28 Score=45.20 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCh--HHHHHHHHHcCCcccEEEecCCCCcccCchHHHHh
Q 027699 22 TKEAAVVDPVEP--EKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKE 68 (220)
Q Consensus 22 ~~~~iliD~g~~--~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~ 68 (220)
+|-.||++.|.. ..+...++-+. +|++|++||.-.|..+|+..|.+
T Consensus 56 nGf~iLv~GgserKS~fwklVrHld-rVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 56 NGFNILVNGGSERKSCFWKLVRHLD-RVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred cceEEeecCCcccccchHHHHHHHh-hhhhhhhcccccCccccchHHHH
Confidence 566777877732 33334444333 79999999999999999877654
No 57
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=60.51 E-value=33 Score=27.06 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=37.5
Q ss_pred CCeEEEEcCC-----ChHHHHHHHHHcCC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCC
Q 027699 22 TKEAAVVDPV-----EPEKIIEAAKQHGV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLD 81 (220)
Q Consensus 22 ~~~~iliD~g-----~~~~~~~~l~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 81 (220)
+...+|+|+- ......+.+++.|. +|..+.+ ..--.|+..+.+.+|+++||+..-+
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~v~i~~~~iD 185 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPDVEIYTAAID 185 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCcEEEEEeec
Confidence 5678999974 33445666777765 4433332 2335688899999999999986543
No 58
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=58.98 E-value=27 Score=27.51 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=37.2
Q ss_pred CCeEEEEcCC-----ChHHHHHHHHHcCC-cccEEEecCCCCcccCchHHHHhhCCCCEEEcCCCC
Q 027699 22 TKEAAVVDPV-----EPEKIIEAAKQHGV-NLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLD 81 (220)
Q Consensus 22 ~~~~iliD~g-----~~~~~~~~l~~~~~-~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 81 (220)
+...+|+|+- ......+.+++.|. +|..+.+ ..--.|+..+.+.||+++||...-+
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~v~i~~~~id 183 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPDVDIYTAAID 183 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCCEEEEEEEC
Confidence 4568999975 33445666777776 4443333 2334578889999999999987543
No 59
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=57.81 E-value=26 Score=27.41 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCeEEEEc---CC-ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHH
Q 027699 22 TKEAAVVD---PV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMK 67 (220)
Q Consensus 22 ~~~~iliD---~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~ 67 (220)
.-.|+|.| || ++-.+...|.+.+..+-.||+| +|.|--..+..++
T Consensus 48 ~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT-GhgDIpmaV~AmK 96 (202)
T COG4566 48 RPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT-GHGDIPMAVQAMK 96 (202)
T ss_pred CCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe-CCCChHHHHHHHH
Confidence 34699999 56 7788999999998877778887 6777655555543
No 60
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=52.65 E-value=18 Score=33.02 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=31.2
Q ss_pred CCCcccCchHHHHhhCCCCEEEcCCCCCCCCCcEEcCCCCEEEeCCceeEEEEeCCCCC
Q 027699 55 HHWDHAGGNEKMKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHT 113 (220)
Q Consensus 55 ~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~~~~~~~~g~~~~~g~~~~i~~~~~pgHt 113 (220)
+|.|| |-..|+..+.+..|.+.+..-.....-.+ ++.+..|-.++|+-||||.
T Consensus 160 GHVDH--GKTTLLD~lRks~VAA~E~GGITQhIGAF----~V~~p~G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 160 GHVDH--GKTTLLDALRKSSVAAGEAGGITQHIGAF----TVTLPSGKSITFLDTPGHA 212 (683)
T ss_pred ecccC--ChhhHHHHHhhCceehhhcCCccceeceE----EEecCCCCEEEEecCCcHH
Confidence 67788 65666666666777766643322211111 1222226778999999996
No 61
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.28 E-value=52 Score=26.85 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHcCCcccEEEecCCCCcccC
Q 027699 22 TKEAAVVDPVEPEKIIEAAKQHGVNLTTVLTTHHHWDHAG 61 (220)
Q Consensus 22 ~~~~iliD~g~~~~~~~~l~~~~~~i~~iiiTH~H~DH~g 61 (220)
.+-.+++||......+....+.|++|-+++-|.+.+|.+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCc
Confidence 4557899998555555556778889999999999999884
No 62
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=42.42 E-value=21 Score=32.77 Aligned_cols=37 Identities=32% Similarity=0.279 Sum_probs=27.0
Q ss_pred EEEEcCCChHHHHHHHHHcCC-cccEEEecCCCCcccC
Q 027699 25 AAVVDPVEPEKIIEAAKQHGV-NLTTVLTTHHHWDHAG 61 (220)
Q Consensus 25 ~iliD~g~~~~~~~~l~~~~~-~i~~iiiTH~H~DH~g 61 (220)
.+|+|.|+...-..++++... .++.|++-|.|+|-+-
T Consensus 421 ~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccccHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 589999965554445555433 8899999999998765
No 63
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=40.77 E-value=40 Score=26.53 Aligned_cols=52 Identities=25% Similarity=0.548 Sum_probs=34.8
Q ss_pred CCeEEEEcCC--C---hHHHHHHHHHcCCccc-----EEEecCCCCcccCchHHHHhhCCCCEEEcCC
Q 027699 22 TKEAAVVDPV--E---PEKIIEAAKQHGVNLT-----TVLTTHHHWDHAGGNEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 22 ~~~~iliD~g--~---~~~~~~~l~~~~~~i~-----~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~ 79 (220)
+...+|+||- . .-..++.|.+.|.... .++.|-. |+..+.+.||+++||+..
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~------Gl~~l~~~~P~v~I~ta~ 182 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPE------GLERLLKAFPDVRIYTAA 182 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHH------HHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHH------HHHHHHHhCCCeEEEEEE
Confidence 4778999973 2 3345566667666332 2333332 889999999999999865
No 64
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=35.32 E-value=1.6e+02 Score=21.73 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=31.1
Q ss_pred eCCC-CCCCCEEEEEccCCCCCCeEEeCCccccccccchhhccCCChHHHHHHHHHHHHhhhCCC
Q 027699 108 HTPC-HTKGHISYYVTGKEGEDPAVFTGDTLYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGL 171 (220)
Q Consensus 108 ~~pg-Ht~~~~~~~~~~~~~~~~ilfsGD~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~ 171 (220)
..|| -+|.-+.+++..++....++++-|.+ ..+.+.+.|..+..+..+|-
T Consensus 78 CSpG~~sP~W~~Vl~~~gG~~~a~v~~~~~~--------------~Pe~i~~~L~~~a~l~~~gy 128 (144)
T PRK13701 78 CSPGDVSPVWVLVLVNAGGEPFAVVQVQDRF--------------APEAISHSLALAASLDAQGY 128 (144)
T ss_pred eCCCCCCcceEEEEEcCCCcEEEEEEecCcc--------------CHHHHHHHHHHHHHhhhcCC
Confidence 3444 45555666665554323456666666 55677788888888877774
No 65
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=34.85 E-value=1.1e+02 Score=25.67 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=30.0
Q ss_pred EEEEEeCCCCeEEEEc-----CCChHHHHHHHHHcCCcccEEEecCCCC
Q 027699 14 AYLIIEETTKEAAVVD-----PVEPEKIIEAAKQHGVNLTTVLTTHHHW 57 (220)
Q Consensus 14 ~~li~~~~~~~~iliD-----~g~~~~~~~~l~~~~~~i~~iiiTH~H~ 57 (220)
..|+.+..+..+|||| ||..-.-.+.|.+.|.+--+.++||+=+
T Consensus 206 m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVf 254 (316)
T KOG1448|consen 206 MVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVF 254 (316)
T ss_pred EEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceec
Confidence 4566665567789998 4544445556777777556899999843
No 66
>PLN02541 uracil phosphoribosyltransferase
Probab=31.86 E-value=1.1e+02 Score=25.01 Aligned_cols=57 Identities=25% Similarity=0.413 Sum_probs=36.6
Q ss_pred CeEEEEcCC-----ChHHHHHHHHHcCCcccE-EEecCCCCcccCchHHHHhhCCCCEEEcCCCC
Q 027699 23 KEAAVVDPV-----EPEKIIEAAKQHGVNLTT-VLTTHHHWDHAGGNEKMKEMVPGIKVYGGSLD 81 (220)
Q Consensus 23 ~~~iliD~g-----~~~~~~~~l~~~~~~i~~-iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 81 (220)
...+|+||- ......+.|++.|.+... ++++=.= --.|+..+.+.||+++||+..-+
T Consensus 158 ~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ia--s~~Gl~~i~~~fP~v~I~ta~ID 220 (244)
T PLN02541 158 SRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVA--APPALKKLSEKFPGLHVYAGIID 220 (244)
T ss_pred CEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEE--CHHHHHHHHHHCcCCEEEEEEEC
Confidence 468999984 334456677777764222 2222111 12578899999999999987643
No 67
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=30.71 E-value=2.5e+02 Score=21.86 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=35.5
Q ss_pred EEEeCCCCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCC
Q 027699 16 LIIEETTKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 16 li~~~~~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~ 79 (220)
+|.+-.++.+|+|| +| ..-...+.|++.|..--+++.||+-+ .++.....+..+=-++++..
T Consensus 77 vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~s~Id~vvvTn 143 (184)
T PF14572_consen 77 VVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVF--SGDAPERLEESPIDEVVVTN 143 (184)
T ss_dssp EES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEET
T ss_pred EEEEccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhhcCCeEEEEec
Confidence 44444456677666 55 33444556778887666899999977 55666555554334566554
No 68
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.68 E-value=1.7e+02 Score=24.78 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=34.6
Q ss_pred CCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCCcccCch-HHHHhhCCCCEEEcCC
Q 027699 22 TKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGN-EKMKEMVPGIKVYGGS 79 (220)
Q Consensus 22 ~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~-~~l~~~~p~~~i~~~~ 79 (220)
++.+++|| +| ......+.+++.|..--+++.||+-+ .++. ..+.+. +--+|+++.
T Consensus 217 Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvf--s~~a~~~l~~s-~i~~iv~Td 277 (319)
T PRK04923 217 GKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVL--SGPAVDNINNS-QLDELVVTD 277 (319)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHhhC-CCCEEEEeC
Confidence 55678887 45 34556677888888667899999876 4444 334322 234566554
No 69
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.30 E-value=1.5e+02 Score=25.24 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=34.4
Q ss_pred CCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCC
Q 027699 22 TKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 22 ~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~ 79 (220)
++.+++|| +| ......+.+++.|..--+++.||+-. .+++.......+--+|+++.
T Consensus 218 gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif--~~~a~~~l~~s~i~~iv~Td 278 (323)
T PRK02458 218 GKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLF--AGGAAEVLENAPIKEILVTD 278 (323)
T ss_pred CCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhc--CchHHHHHhhCCCCEEEEEC
Confidence 56678777 44 34455666778887555789999966 55554333332234566654
No 70
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=27.41 E-value=94 Score=26.33 Aligned_cols=62 Identities=23% Similarity=0.175 Sum_probs=36.5
Q ss_pred EEEeCCCCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEcCC
Q 027699 16 LIIEETTKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 16 li~~~~~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~~~ 79 (220)
++.+-.++.++||| +| ..-...+.|++.|.+=-++..||.=. .++.....+...=-+|++..
T Consensus 208 ~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vf--s~~a~~~l~~~~i~~vivTn 274 (314)
T COG0462 208 LIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVF--SGAALERLEASAIDEVIVTD 274 (314)
T ss_pred cccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhh--ChHHHHHHhcCCCCEEEEeC
Confidence 34444456788877 44 44455667888888666899999865 34444433332123555544
No 71
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=27.20 E-value=2.2e+02 Score=21.06 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=32.6
Q ss_pred EeCCC-CCCCCEEEEEccCCCCCCeEEeCCccccccccchhhccCCChHHHHHHHHHHHHhhhCCC
Q 027699 107 LHTPC-HTKGHISYYVTGKEGEDPAVFTGDTLYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGL 171 (220)
Q Consensus 107 ~~~pg-Ht~~~~~~~~~~~~~~~~ilfsGD~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hg~ 171 (220)
+..|| -+|.-+.+++..++..-.++.+-|.+ ..+.+.+.|..+..+..+|-
T Consensus 77 vCSpG~~sp~W~~vl~~~~G~~~~vv~t~~~f--------------~PE~I~h~L~lva~ld~~Gy 128 (143)
T PF06290_consen 77 VCSPGEVSPYWMLVLVNRGGQPFAVVRTQDRF--------------EPETINHTLALVAGLDRDGY 128 (143)
T ss_dssp EE-SSSS-SSEEEEEEECCC-SEEEEEEESS----------------HHHHHHHHHHHHHHHHTT-
T ss_pred EcCCCCcCcceEEEEECCCCcEEEEEEecCcc--------------CHHHHHHHHHHHHhHhhcCC
Confidence 55677 67887777777665434567777777 55677788888888877774
No 72
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.53 E-value=90 Score=26.45 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=34.3
Q ss_pred CCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCCcccCch-HHHHhhCCCCEEEcCC
Q 027699 22 TKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGN-EKMKEMVPGIKVYGGS 79 (220)
Q Consensus 22 ~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~-~~l~~~~p~~~i~~~~ 79 (220)
++.+++|| +| ......+.+++.|..--+++.||+=+ .++. ..|.+. +=.+|++..
T Consensus 217 Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf--~~~a~~~l~~~-~i~~iv~Td 277 (320)
T PRK02269 217 GKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVL--SGPALDNIQKS-AIEKLVVLD 277 (320)
T ss_pred CCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHHhC-CCCEEEEeC
Confidence 45677777 55 44556677888888666899999754 3443 444432 234555554
No 73
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=26.19 E-value=1.5e+02 Score=25.59 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCeEEEEcCCChHHHHHHHHHcCC-----------------cccEEEecCCCCcc
Q 027699 22 TKEAAVVDPVEPEKIIEAAKQHGV-----------------NLTTVLTTHHHWDH 59 (220)
Q Consensus 22 ~~~~iliD~g~~~~~~~~l~~~~~-----------------~i~~iiiTH~H~DH 59 (220)
....++||+|....+++.|.+.|. +.|.||+|.+=.|=
T Consensus 179 ~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP 233 (368)
T COG0505 179 GKHVVVIDFGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP 233 (368)
T ss_pred CcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh
Confidence 457899999987788888887764 46788888876554
No 74
>PF03123 CAT_RBD: CAT RNA binding domain; InterPro: IPR004341 The CAT RNA-binding domain is found at the amino terminus of a family of transcriptional antiterminator proteins, the Co-AntiTerminator (CAT) domain. This domain forms a dimer in the crystal structure []. Transcriptional antiterminators of the BglG/SacY family are regulatory proteins that mediate the induction of sugar metabolizing operons in Gram-positive and Gram-negative bacteria. Upon activation, these proteins bind to specific targets in nascent mRNAs, thereby preventing abortive dissociation of the RNA polymerase from the DNA template [].; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1AUU_B 1TLV_A 1L1C_A 1H99_A 3RIO_A.
Probab=24.40 E-value=1.8e+02 Score=17.93 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=17.8
Q ss_pred CeEEEEceeCCeeEEEEEeCCCCeEEEEcCC
Q 027699 1 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPV 31 (220)
Q Consensus 1 m~v~~~~~~~~n~~~li~~~~~~~~iliD~g 31 (220)
|+|..+ ++.| +.++.++.+.+.|++-.|
T Consensus 1 m~I~Kv--lNNN-vvl~~~~~~~E~Iv~GkG 28 (59)
T PF03123_consen 1 MKIKKV--LNNN-VVLAKDDNGQEVIVMGKG 28 (59)
T ss_dssp -EEEEE--EETT-EEEEE-CCSSEEEEE-TT
T ss_pred CEEEEE--ccCe-EEEEEeCCCCEEEEEeec
Confidence 555554 5667 777776556688999887
No 75
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=23.31 E-value=1.8e+02 Score=23.97 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHcCCcccEEEecCCCCcccCchHHHHhh-CCCCEEEcCCCCC
Q 027699 32 EPEKIIEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEM-VPGIKVYGGSLDN 82 (220)
Q Consensus 32 ~~~~~~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~-~p~~~i~~~~~~~ 82 (220)
.+....+.+++.+ .+|++|+.=.-.--..|.....+. -|+++||+-+.+.
T Consensus 160 qgTiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~ 210 (323)
T KOG1251|consen 160 QGTIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEA 210 (323)
T ss_pred cchHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcc
Confidence 3444566677777 899999986644444444444443 4889999877544
No 76
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=23.21 E-value=1.8e+02 Score=22.31 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHHcCCcccEEEecCCCCcccCchHHHHhhCCCCEEEc
Q 027699 37 IEAAKQHGVNLTTVLTTHHHWDHAGGNEKMKEMVPGIKVYG 77 (220)
Q Consensus 37 ~~~l~~~~~~i~~iiiTH~H~DH~gg~~~l~~~~p~~~i~~ 77 (220)
...|++.|...|.| +.|.= .|..-.|++.+|++++++
T Consensus 57 ~~~L~~~Gf~PDvI-~~H~G---WGe~Lflkdv~P~a~li~ 93 (171)
T PF12000_consen 57 ARQLRAQGFVPDVI-IAHPG---WGETLFLKDVFPDAPLIG 93 (171)
T ss_pred HHHHHHcCCCCCEE-EEcCC---cchhhhHHHhCCCCcEEE
Confidence 44566677777754 44442 455566777899888755
No 77
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.82 E-value=1e+02 Score=25.83 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCC
Q 027699 22 TKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHW 57 (220)
Q Consensus 22 ~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~ 57 (220)
++.+++|| +| ......+.|++.|..--+++.||+=.
T Consensus 211 Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvf 251 (301)
T PRK07199 211 GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALF 251 (301)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeC
Confidence 55678877 44 34556677888888666899999743
No 78
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.30 E-value=1.1e+02 Score=26.03 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=26.0
Q ss_pred CCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCC
Q 027699 22 TKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHW 57 (220)
Q Consensus 22 ~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~ 57 (220)
++.+++|| +| ......+.+++.|...-+++.||+-+
T Consensus 218 Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf 258 (332)
T PRK00553 218 NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLF 258 (332)
T ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeec
Confidence 56688888 44 33445566788888777899999865
No 79
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=22.11 E-value=2.6e+02 Score=19.28 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=34.9
Q ss_pred CCCCcccC-chHHHHhhCCCCEEEcCCCCCCCCCcEEcCCCCEEEeCC---ceeEEEEeCCCCCCCCEEE
Q 027699 54 HHHWDHAG-GNEKMKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGA---HVNVLSLHTPCHTKGHISY 119 (220)
Q Consensus 54 H~H~DH~g-g~~~l~~~~p~~~i~~~~~~~~~~~~~~~~~g~~~~~g~---~~~i~~~~~pgHt~~~~~~ 119 (220)
|.|.++.. ..+.+.+..+...+++++.++. ..-+.+|+.+.+-. .+.+.+..+++=.+|.+.+
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~---~lgi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~ 81 (122)
T cd02791 15 QWHTMTRTGRVPRLNAHVPEPYVEIHPEDAA---RLGLKEGDLVRVTSRRGEVVLRVRVTDRVRPGEVFV 81 (122)
T ss_pred hhccCCccCChHHHHhhCCCCEEEECHHHHH---HcCCCCCCEEEEEcCCEEEEEEEEECCCcCCCeEEE
Confidence 45666533 3566666666667888775442 12345666665421 3455666666645554443
No 80
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=22.00 E-value=66 Score=24.29 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=51.0
Q ss_pred EEeCCcccccccc-chhhccCCChHHHHHHHHHHHHh----hhCCCCCCcCcHHHHHHhCCccccCcHHHHHHhCCCCHH
Q 027699 131 VFTGDTLYTVKNL-LFALTVEPSNVKLQQKLAWAQNQ----RQAGLPTIPSTIEEELETNPFMRVDLPELQKLVGFNDPI 205 (220)
Q Consensus 131 lfsGD~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~----~~hg~~~~~~~l~~e~~~n~~l~~~~~~~~~~~~~~~~~ 205 (220)
+.=||-+-...|. .....+.-++.+-..||+.+... ...+...+-..-+--|.|...||...+.+.=.+-.++..
T Consensus 23 fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~ 102 (161)
T COG3265 23 FIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGDFD 102 (161)
T ss_pred eecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCCHH
Confidence 5567777554444 24444444445555566665553 333333344455555667777776555433333467788
Q ss_pred HHHHHHHHhhccC
Q 027699 206 EALREIRKRKDNW 218 (220)
Q Consensus 206 ~~~~~~~~~~~~~ 218 (220)
.+++.|+++++-|
T Consensus 103 ~i~~Rm~~R~gHF 115 (161)
T COG3265 103 LILERMKARKGHF 115 (161)
T ss_pred HHHHHHHhcccCC
Confidence 8888888888766
No 81
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=21.39 E-value=1.2e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=26.1
Q ss_pred CCeEEEEc----CC-ChHHHHHHHHHcCCcccEEEecCCCC
Q 027699 22 TKEAAVVD----PV-EPEKIIEAAKQHGVNLTTVLTTHHHW 57 (220)
Q Consensus 22 ~~~~iliD----~g-~~~~~~~~l~~~~~~i~~iiiTH~H~ 57 (220)
++.+++|| +| ......+.+++.|...-+++.||+=+
T Consensus 230 gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglf 270 (326)
T PLN02297 230 GRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVF 270 (326)
T ss_pred CCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECccc
Confidence 45677777 45 44556677888888777899999754
No 82
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.12 E-value=28 Score=27.89 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCCCcccCchHHHHhhCCCC-EEEcCC
Q 027699 54 HHHWDHAGGNEKMKEMVPGI-KVYGGS 79 (220)
Q Consensus 54 H~H~DH~gg~~~l~~~~p~~-~i~~~~ 79 (220)
|.|.||.-++-.+++.. ++ +|++|.
T Consensus 42 HSh~~Hl~al~~~a~~~-gv~~V~vH~ 67 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQ-GVKKVYVHA 67 (223)
T ss_dssp S--HHHHHHHHHHHHHT-T-SEEEEEE
T ss_pred cccHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 89999999998888776 54 477764
No 83
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=20.64 E-value=1.6e+02 Score=25.36 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCcccEEEecCCCCcccCc-hHHHHhhCCCCEEEcCC
Q 027699 35 KIIEAAKQHGVNLTTVLTTHHHWDHAGG-NEKMKEMVPGIKVYGGS 79 (220)
Q Consensus 35 ~~~~~l~~~~~~i~~iiiTH~H~DH~gg-~~~l~~~~p~~~i~~~~ 79 (220)
...+.|.+.+.++-.|=.+|.|..|+.. +..+++.+|+++|++..
T Consensus 111 er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN 156 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN 156 (352)
T ss_dssp HHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc
Confidence 3444455555444444458999999876 46788889989998765
Done!