BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027702
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 136/215 (63%), Gaps = 3/215 (1%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G
Sbjct: 1 MPFPFGKSH--KSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGT 57
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
E EP + V QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V
Sbjct: 58 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 117
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++I +L L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ T
Sbjct: 118 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 177
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVYT 215
FD+ASDAF+TFKDLLT+H + +E+L HYD ++
Sbjct: 178 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFS 212
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 128/203 (63%), Gaps = 4/203 (1%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K P E+VK K +L L+ + K +KA EE+ K+ M+ +L G E EP + V
Sbjct: 15 KNPAEIVKILKDNLAILEKQD----KKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVA 70
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L+ L+ L ++ +E +KD+ ++ +L++++ + V++I H +L
Sbjct: 71 QLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILF 130
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y+ ++AL CGIMLRECI+ LA+ IL S F FFK+VEL TFD+ASDAF+TF
Sbjct: 131 MLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATF 190
Query: 192 KDLLTKHLTVVSEYLTAHYDEVY 214
KDLLT+H +V+++L +YD ++
Sbjct: 191 KDLLTRHKVLVADFLEQNYDTIF 213
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K+P ++VK K S L+ + + + KA EKA EE+ KN V + +L G E EP + V
Sbjct: 10 KSPADIVKNLKESXAVLEKQDISDKKA-EKATEEVSKNLVAXKEILYGTNEKEPQTEAVA 68
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V++I +L
Sbjct: 69 QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 128
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y++ E+AL+CGI LRECI+ LA+ IL S F FF++VE TFD+ASDAF+TF
Sbjct: 129 XLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRYVEXSTFDIASDAFATF 188
Query: 192 KDLLTKHLTVVSEYLTAHYDEVYT 215
KDLLT+H + +E+L HYD ++
Sbjct: 189 KDLLTRHKLLSAEFLEQHYDRFFS 212
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 147 GIMLRECIKFPSLARYILESASFELFFKFVELPTFDV 183
G ML + ++ +L+ ESA+F++F K+++ FDV
Sbjct: 118 GEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDV 154
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 129 LLDFLVVCYDNKEVALHCG----IMLRECIKFPSLARYILESASFELFFKFVELPTFDVA 184
+ F+ +C +++ + L G +++R C F L +L + F L + D+
Sbjct: 80 ITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLV 139
Query: 185 SDAFSTFKDLLTKHLT 200
++AF K+L + LT
Sbjct: 140 NEAFDFAKNLCSLQLT 155
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 131 DFLVVCYDNKEVALHCG----IMLRECIKFPSLARYILESASFELFFKFVELPTFDVASD 186
F+ +C +++ + L G +++R C F L +L + F L + D+ ++
Sbjct: 82 GFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNE 141
Query: 187 AFSTFKDLLTKHLT 200
AF K+L + LT
Sbjct: 142 AFDFAKNLCSLQLT 155
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 132 FLVVCYDNKEVALHCG----IMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDA 187
F+ +C +++ + L G +++R C F L +L + F L + D+ ++A
Sbjct: 76 FMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEA 135
Query: 188 FSTFKDLLTKHLT 200
F K+L + LT
Sbjct: 136 FDFAKNLCSLQLT 148
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 39 LEKAMEEIEKNFVTMRCMLSGDG------EVEPNADQVLQLATEVC 78
LEKA++ IE+NF M+ GD EV P + +AT V
Sbjct: 11 LEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVG 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,040,562
Number of Sequences: 62578
Number of extensions: 231802
Number of successful extensions: 793
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 18
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)