BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027703
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 234 bits (597), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 136/164 (82%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 19 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 78
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QER+RA+TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + MLVGNK DL
Sbjct: 79 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
+R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 139 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 234 bits (596), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 136/164 (82%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QER+RA+TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + MLVGNK DL
Sbjct: 88 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
+R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 135/164 (82%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 87
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + MLVGNK DL
Sbjct: 88 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
+R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 230 bits (586), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 135/164 (82%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 7 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + MLVGNK DL
Sbjct: 67 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
+R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 127 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 229 bits (585), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/186 (59%), Positives = 142/186 (76%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QER+R +TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + MLVGNK DL
Sbjct: 64 QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
+R V T+E ++ AE+ L F+ETSALDSTNVE AF+ ++ EIY +S+K + A E
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 183
Query: 193 LSVNRV 198
N V
Sbjct: 184 SPGNNV 189
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 228 bits (580), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 134/164 (81%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 63
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + LVGNK DL
Sbjct: 64 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
+R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 124 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/164 (64%), Positives = 134/164 (81%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK+VLIGDS VGKSNLLSRF RNEF+ SK+TIGVEF T+ + +DGK +KAQIWDTAG
Sbjct: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 69
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+VYDI + ++++V+RWL+EL H D+ + LVGNK DL
Sbjct: 70 LERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
+R V T+E ++ AE+ GL F+ETSALDSTNVEAAF+ ++ EIY
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/172 (60%), Positives = 133/172 (77%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
LFKIVLIGDS VGKSNLLSRF +NEF+ +SK+TIGVEF T+ ++I+GK +KAQIWDTAGQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
ER+RA+TSAYYRGAVGAL+VYDI++ SS+++ WL EL + D V L+GNK DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLN 185
+R V TEE K+ A+E L F ETSAL+S NV+ AFE +I IY +S+ ++
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD 184
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 132/170 (77%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
++FK+VLIG+S VGK+NLLSRF RNEF +S+ TIGVEF T+ V + VKAQIWDTAG
Sbjct: 9 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 68
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+V+D+T+ ++ V+RWL+EL H + + MLVGNK DL
Sbjct: 69 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
R+V TEE + AE GL F+ETSALDSTNVE AFE V++EI++ +S++
Sbjct: 129 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 219 bits (559), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 132/170 (77%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
++FK+VLIG+S VGK+NLLSRF RNEF +S+ TIGVEF T+ V + VKAQIWDTAG
Sbjct: 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAG 83
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+V+D+T+ ++ V+RWL+EL H + + MLVGNK DL
Sbjct: 84 LERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
R+V TEE + AE GL F+ETSALDSTNVE AFE V++EI++ +S++
Sbjct: 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 137/171 (80%), Gaps = 2/171 (1%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTA 71
YLFKIVLIGDS VGKSNLLSRF R+EF+ SK+TIGVEF T+ + + + K +KAQIWDTA
Sbjct: 6 YLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTA 65
Query: 72 GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
GQER+RA+TSAYYRGAVGAL+VYDIT+++SF+++++WL+EL + D+ + +LVGNK DL
Sbjct: 66 GQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL 125
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
+R ++ + A++E L F+ETSAL++TNVE AF ++ EIY N+ +K
Sbjct: 126 KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIY-NVRQK 175
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/170 (57%), Positives = 127/170 (74%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFKIVLIGDS VGKSNLLSRF +EF+ SK+TIGVEF T+ ++++ K++KAQIWDTAG
Sbjct: 9 YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAG 68
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+RA+TSAYYRGAVGAL+VYDI++ SS+++ WL EL + D V L+GNK DL
Sbjct: 69 LERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
+R V T+E K+ A E + F ETSAL+S NV+ AF +I I+ +S+
Sbjct: 129 HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKH 178
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 119/172 (69%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK ++IGD+ VGKS LL +F F TIGVEF ++V+IDGK++K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QE FR++T +YYRGA GAL+VYDITRR +F+ + WLE+ H + + ML+GNK DL+
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
S RDV EEG++ A E GL FMETSA + NVE AF +EIY I + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 129/180 (71%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIG+S VGKS LL RF+ + + ++ +TIGV+F+ + V++DGK VK QIWDTAG
Sbjct: 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+ + + V ++LVGNKCDL
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
R V + K A+ + F+ETSALDSTNVE AF + R+I ++S++ LN K E
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 129/180 (71%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIG+S VGKS LL RF+ + + ++ +TIGV+F+ + V++DGK VK QIWDTAG
Sbjct: 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+ + + V ++LVGNKCDL
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192
R V + K A+ + F+ETSALDSTNVE AF + R+I ++S++ LN K E
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKE 186
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 117/164 (71%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK ++IGD+ VGKS LL +F F TIGVEF +++ IDGK++K QIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QE FR++T +YYRGA GAL+VYDITRR +F+ + WLE+ H ++ + ML+GNK DL+
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIY 176
S R+V EEG++ A E GL FMETSA ++NVE AF +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 124/170 (72%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGK+ +L RF+ + F+S +TIG++F+ + +++DGK +K QIWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +T+AYYRGA+G ++VYDIT SFD+++ W+ + H V +M++GNKCD++
Sbjct: 65 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
R VS E G+ LA + G+ FMETSA + NVE AF + R+I + + +K
Sbjct: 125 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 123/169 (72%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGK+ +L RF+ + F+S +TIG++F+ + +++DGK +K QIWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +T+AYYRGA+G ++VYDIT SFD+++ W+ + H V +M++GNKCD++
Sbjct: 67 QERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
R VS E G+ LA + G+ FMETSA + NVE AF + R+I + + +
Sbjct: 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 122/163 (74%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + + ++ K VK QIWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G ++VYD+T R SFD+VK+W++E+ + V ++LVGNKCDL
Sbjct: 68 QERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
S R V+++EG+ LA+ G+ F+ETSA ++ NVE AF + EI
Sbjct: 128 SKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 116/166 (69%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y+FK ++IGD VGKS LL +F +F ++ TIGVEF T+++++ G+++K QIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFRAVT +YYRGA GAL+VYDITRRS+++ + WL + + +L+GNK DL+
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
+ RDV+ EE K AEE GL F+E SA NVE AF ++IY N
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 120/163 (73%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIG+S VGKS LL RF+ + + ++ +TIGV+F+ + V++DGK VK QIWDTAG
Sbjct: 20 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRG+ G ++VYD+T + SF+ VK WL+E+ + + V ++LVGNKCDL
Sbjct: 80 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + K A+ + F+ETSALDSTNVE AF + R+I
Sbjct: 140 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 116/168 (69%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y+FK ++IGD VGKS LL +F +F ++ TIGVEF T+++++ G+++K QIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
Q RFRAVT +YYRGA GAL+VYDITRRS+++ + WL + + +L+GNK DL+
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
+ RDV+ EE K AEE GL F+E SA NVE AF ++IY NI
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 119/163 (73%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 119/163 (73%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 5 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 119/163 (73%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 24 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL
Sbjct: 84 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 144 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 119/163 (73%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGK+ LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 15 YLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 118/163 (72%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE +F EI
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 118/162 (72%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
LFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
ERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL +
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 125
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 121/172 (70%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + S+ +VK+WL+E+ + V ++LVGNK DL
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 184
+ + V K A+ G+ F+ETSA ++TNVE AF + EI + +VL
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 118/163 (72%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVG KCDL
Sbjct: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 127 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 117/163 (71%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
YLFK++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAG
Sbjct: 8 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS+YYRGA G +VVYD+T + S+ +VK+WL+E+ + V ++LVGNK DL
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + V K A+ G+ F+ETSA ++TNVE AF + EI
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 116/160 (72%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
FR +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL + +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
V K A+ G+ F+ETSA ++TNVE +F + EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 114/175 (65%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFK ++IG + GKS LL +F N+F +S TIGVEF ++VV++ GK VK QIWDTAG
Sbjct: 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAG 83
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR+VT +YYRGA GAL+VYDIT R +++S+ WL + T + +L GNK DLD
Sbjct: 84 QERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
R+V+ E A+E L F+ETSAL NVE AF R I + I L+ +
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPE 198
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 119/174 (68%), Gaps = 5/174 (2%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFK+++IGDS VGKS+LL RFA N F + TIGV+F+ + V+I+G++VK QIWDTAG
Sbjct: 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +TS YYRG G +VVYD+T SF +VKRWL E+ +CD V R+LVGNK D
Sbjct: 68 QERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRILVGNKNDDP 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF----EVVIREIYSNISRK 182
+ V TE+ A + G+ ETSA ++ NVE F E+V+R N++++
Sbjct: 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 116/164 (70%), Gaps = 1/164 (0%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFK+VL+GD++VGK+ ++ RF F +TIGV+F + ++I GK VK QIWDTAG
Sbjct: 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAG 87
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR +T +YYR A GA++ YDIT+RSSF SV W+E++ + + + ++L+GNK DL
Sbjct: 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 133 SIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
+R+VS E +SLAE + L +ETSA DS+NVE AF V E+
Sbjct: 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
+ KI+LIGDS VGKS LL RF ++F+ + TIG++F+ + VDI+GK+VK QIWDTAGQ
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
ERFR +T+AYYRGA+G ++VYDIT +F ++K+W + + H + +LVGNK D+++
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
R V+ ++G++LA+E G+ F+E+SA + NV F + + I I
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 115/175 (65%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFK ++IG++ GKS LL +F +F +S TIGVEF ++++++ GK VK QIWDTAG
Sbjct: 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 68
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR+VT +YYRGA GAL+VYDIT R +++++ WL + + +L GNK DLD
Sbjct: 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
+ R+V+ E A+E L F+ETSAL NVE AF R+I + I L+ +
Sbjct: 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
+ KI+LIGDS VGKS LL RF ++F+ + TIG++F+ + VDI+GK+VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
ERFR +T+AYYRGA+G ++VYD+T +F ++K+W + + H + +LVGNK D+++
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
R V+ ++G++LA+E G+ F+E+SA + NV F + + I I
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
+ KI+LIGDS VGKS LL RF ++F+ + TIG++F+ + VDI+GK+VK Q+WDTAGQ
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
ERFR +T+AYYRGA+G ++VYD+T +F ++K+W + + H + +LVGNK D+++
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
R V+ ++G++LA+E G+ F+E+SA + NV F + + I I
Sbjct: 140 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KI+LIGDS VGKS LL RF ++F+ + TIG++F+ + VDI+GK+VK QIWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
FR +T+AYYRGA G ++VYDIT +F ++K+W + + H + +LVGNK D ++ R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
V+ ++G++LA+E G+ F+E+SA + NV F + + I I
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
FK++L+GDS VGK+ LL RF F + + +T+G++F+ +V+D+DG +VK Q+WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
ERFR+VT AYYR A L++YD+T ++SFD+++ WL E+ + V ML+GNK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V E+G+ LA+E GL FMETSA NV+ AF + +E+
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KI+LIGDS VGKS LL RF ++F+ + TIG++F+ + VDI+GK+VK Q+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
FR +T+AYYRGA G ++VYD+T +F ++K+W + + H + +LVGNK D ++ R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
V+ ++G++LA+E G+ F+E+SA + NV F + + I I
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 110/163 (67%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFK ++IG++ GKS LL +F +F +S TIGVEF ++++++ GK VK QIWDTAG
Sbjct: 10 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 69
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR+VT +YYRGA GAL+VYDIT R +++++ WL + + +L GNK DLD
Sbjct: 70 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ R+V+ E A+E L F+ETSAL +VE AF R+I
Sbjct: 130 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 112/160 (70%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y+FKI++IG+S+VGK++ L R+A + F +T+G++F+ + + + K +K QIWDTAG
Sbjct: 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QER+R +T+AYYRGA+G +++YDIT SF++V+ W ++ T+ +LVGNKCD++
Sbjct: 64 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
R VS+E G+ LA+ G F E SA D+ NV+ FE ++
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 109/163 (66%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFK ++IG++ GKS LL +F +F +S TIGVEF ++++++ GK VK QIWDTAG
Sbjct: 7 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ERFR+VT +YYRGA GAL+VYDIT R +++++ WL + + +L GNK DLD
Sbjct: 67 LERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ R+V+ E A+E L F+ETSAL +VE AF R+I
Sbjct: 127 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 115/168 (68%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y+FK+++IG+S+VGK++ L R+A + F +T+G++F+ + V K VK QIWDTAG
Sbjct: 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QER+R +T+AYYRGA+G +++YDIT SF++V+ W ++ T+ +LVGNKCD++
Sbjct: 82 QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
R V TE+G+ LAE+ G F E SA ++ +V AFE ++ I +S
Sbjct: 142 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 104/156 (66%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+LFKIVLIG++ VGK+ L+ RF + F ATIGV+F + V+I+G++VK QIWDTAG
Sbjct: 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERFR++T +YYR A ++ YDIT SF + WL E+ + V +LVGNK DL
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
R+VS + + +E + ++++ETSA +S NVE F
Sbjct: 145 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 108/176 (61%), Gaps = 8/176 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K+ L+GD+ VGKS+++ RF ++ FD N TIG F T+ V + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RF ++ YYRG+ A++VYDIT++ SF ++K+W++EL H + + GNKCDL I
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK 190
R+V ++ K AE G +ETSA ++ N+E E++ ISR++ D ++
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIE--------ELFQGISRQIPPLDPHE 191
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 110/160 (68%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y+FK++LIG+S+VGK++ L R+A + F +T+G++F+ + V K +K QIWDTAG
Sbjct: 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QER+R +T+AYYRGA+G L++YDI + SF +V+ W ++ T+ +LVGNKCDL+
Sbjct: 81 QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
R V E+G+ LA++ G F E SA ++ NV+ FE ++
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 102/164 (62%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 102/164 (62%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 110/168 (65%), Gaps = 8/168 (4%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+VL+GD GKS+L+ RF +++F ++TIG F +Q + ++ VK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135
+ ++ YYRGA A++V+D+T ++SF+ K+W++EL + + L GNK DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 136 DVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
V+ E+ ++ A+E GLFFMETSA +TNV +EI+ I+R++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNV--------KEIFYEIARRL 173
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 104/162 (64%), Gaps = 2/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
KI++IG+S VGKS+LL RF + FD ATIGV+F+ + + +DG + K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
RFR +T +YYRGA G ++VYD+TRR +F + WL EL T+C + LVGNK D ++
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R+V EG A + F+E SA V+ AFE ++ +I
Sbjct: 136 -REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 112/176 (63%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y FKI++IG+S+VGK++ L R+A + F +T+G++F+ + + + K +K QIWDTAG
Sbjct: 7 YXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
ER+R +T+AYYRGA G ++ YDIT SF++V+ W ++ T+ +LVGNKCD +
Sbjct: 67 LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXE 126
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
R VS+E G+ LA+ G F E SA D+ NV+ FE ++ I S + +D
Sbjct: 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADP 182
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 103/161 (63%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT + +F K W++EL ++ L GNK DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V EE ++ A++ L FMETSA + NV F + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L F ETSA S NV F + +++ N
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+S VGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V +E +S A++ L FMETSA S NV F + +++ N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 101/161 (62%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT +F K W++EL + L GNK DL S
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V +E ++ A++ L FMETSA + NV F + +++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 100/161 (62%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT SF K W++EL + L GNK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V +E +S A++ L FMETSA S NV F + +++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 98/163 (60%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K+ L+GD+ VGKS+++ RF + FD N TIG F T+ V + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFRA+ YYRG+ A++VYDIT+ +F ++K W+ EL H ++ + GNKCDL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
R+V + K A+ F+ETSA ++ N+ F + R I S
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 168
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 100/161 (62%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TI F TQ V +D VK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT +F K W++EL + L GNK DL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V +E ++ A++ L FMETSA + NV F + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 100/161 (62%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+G+SAVGKS+L+ RF + +F ++TIG F TQ V +D VK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
R+ ++ YYRGA A+VVYDIT +F K W++EL + L GNK DL S
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V +E ++ A++ L FMETSA + NV F + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 90/115 (78%)
Query: 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
++LIGDS VGKS LL RFA + + + +TIGV+F+ + +++DGK +K QIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131
R +TS+YYRGA G +VVYD+T + SF++VK+WL+E+ + V ++LVGNKCDL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+VL+G++AVGKS+++ RF N+F N + TIG F TQ V I+ VK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL---D 132
F ++ YYR A ALVVYD+T+ SF + W++EL + LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
R V+ EEG+ LAEE+GL F ETSA NV F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 5/170 (2%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
+FKI++IGDS VGK+ L RF F ++ATIGV+F+ + VDIDG+ +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 74 ERFR-AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDL 131
ERFR ++ YYR + VYD+T +SF S+ W+EE H + R+LVGNKCDL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSAL---DSTNVEAAFEVVIREIYSN 178
S V T+ + A+ + ETSA D+ +VEA F + ++ S+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 113/168 (67%), Gaps = 1/168 (0%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
+ ++++IG VGK++L+ RF + F K+T+GV+F+ + V++ GK+++ QIWDTAG
Sbjct: 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERF ++TSAYYR A G ++VYDIT++ +FD + +W++ + + +LVGNK D +
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 133 SIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREIYSNI 179
+ R+++ ++G+ A++ G+ F E SA D+ NV+ F ++ +I +
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 107/157 (68%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + V+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R VSTEEG+ A+E + F+ETSA NV+ F V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 97/163 (59%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K+ L+GD+ VGKS+++ RF + FD N TIG F T+ V + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFRA+ YYRG+ A++VYDIT+ +F ++K W+ EL H ++ + GNKCDL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177
R+V + K A+ F+ETSA ++ N+ F + R I S
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 5/170 (2%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
+FKI++IGDS VGK+ L RF F ++ATIGV+F+ + VDIDG+ +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 74 ERFR-AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDL 131
ERFR ++ YYR + VYD T +SF S+ W+EE H + R+LVGNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSAL---DSTNVEAAFEVVIREIYSN 178
S V T+ + A+ ETSA D+ +VEA F + ++ S+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
LFKI+L+GD VGKS+L++R+ N+FDS TIGVEF + +++DG V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERFR++ + +YRG+ L+ + + SF ++ W +E + D + +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
D+ R VSTEE ++ ++ G + + ETSA DSTNV AAFE +R I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 103/155 (66%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V +G+ AVGK+++++RF + FD+N ++TIG++F ++ + +D V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT R SF++ +W++++ V LVGNK DL +
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
R V+ EEG A+E F ETSA N++ F+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 106/157 (67%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + ++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R VS EEG+ A+E + F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 106/157 (67%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + V+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R VS EEG+ A+E + F+ETSA NV+ F V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 106/157 (67%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + V+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R ++ EEG+ A+E + F+ETSA NV+ F V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 12/170 (7%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+KIVL GD+AVGKS+ L R +NEF N AT+GV+FQ + + +DG+ Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y+R A G L++YD+T SF +++ W++ + V MLVGNK D I
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD---I 145
Query: 135 RDVSTEEGK---------SLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
RD + EG+ LA G F ETSA D +N+ A + RE+
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
LFK++L+GD VGKS+L++R+ N+FD+ TIGVEF + +++DG V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERFR++ + +YRG+ L+ + + SF ++ W +E + D + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
D+ S R VSTEE ++ + G + + ETSA D+TNV AAFE +R +
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
LFK++L+GD VGKS+L++R+ N+FD+ TIGVEF + +++DG V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERFR++ + +YRG+ L+ + + SF ++ W +E + D + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
D+ S R VSTEE ++ + G + + ETSA D+TNV AAFE +R +
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 109/167 (65%), Gaps = 6/167 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++L+GD VGKS+L++R+ N+FDS + TIGVEF + +++DG+ V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERF+++ + +YRGA L+ + + R SF+++ W +E + D +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 130 DLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIREI 175
D + R V+TEE ++ E G + ++ETSA D TNV AFE +R++
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + ++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R VS EEG+ A+E + F+ETSA NV+ F V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + V+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R VS EEG+ A+E + F+ETSA NV+ F V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 94/156 (60%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y FK+VL+G+ VGK++L+ R+ N+F+ T+G F T+ ++I GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERF A+ YYR + GA++VYDIT SF VK W++EL + +VGNK DL+
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
R VS +E +S AE G TSA + +E F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 105/157 (66%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+V +G+ +VGK++L++RF + FD+ +ATIG++F ++ + ++ + V+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
RFR++ +Y R + A+VVYDIT +SF +W++++ T + V MLVGNK DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171
R VS EEG+ A+E + F+ETSA NV+ F V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 93/156 (59%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y FK+VL+G+ VGK++L+ R+ N+F+ T+ F T+ ++I GK V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERF A+ YYR + GA++VYDIT SF VK W++EL + +VGNK DL+
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
R VS +E +S AE G TSA + +E F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 93/156 (59%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
Y FK+VL+G+ VGK++L+ R+ N+F+ T+ F T+ ++I GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132
QERF A+ YYR + GA++VYDIT SF VK W++EL + +VGNK DL+
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
R VS +E +S AE G TSA + +E F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 108/172 (62%), Gaps = 13/172 (7%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK----------E 62
YL K++ +GDS VGK+ L R+ N+F+ T+G++F+ + V + + +
Sbjct: 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
V Q+WDTAGQERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L +C+
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP- 142
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
+L+GNK DL R+V+ + + LA++ G+ + ETSA NVE A E ++
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID----------GKE 62
YL K + +GDS VGK+++L ++ +F+S T+G++F+ + V G+
Sbjct: 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR 122
+ Q+WDTAG ERFR++T+A++R A+G L+++D+T SF +V+ W+ +L H +
Sbjct: 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD 129
Query: 123 M-LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISR 181
+ L GNK DL+ R V EE + LAE+ G+ + ETSA + TN+ A E+++ I + R
Sbjct: 130 IVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 182 KV 183
V
Sbjct: 190 SV 191
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 13/183 (7%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
YL K++ +GDS VGK+ L R+ N+F+ T+G++F+ + V D G +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
V Q+WDTAG ERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L +C+
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
+L+GNK DL R+V+ + + LAE+ G+ + ETSA NVE + E ++ I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKV 183
+ V
Sbjct: 189 KCV 191
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 13/183 (7%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
YL K++ +GDS VGK+ L R+ N+F+ T+G++F+ + V D G +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
V Q+WDTAG ERFR++T+A++R A+G L+++D+T + SF +V+ W+ +L +C+
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNIS 180
+L+GNK DL R+V+ + + LAE+ G+ + ETSA NVE + E ++ I +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 181 RKV 183
+ V
Sbjct: 189 KCV 191
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 107/167 (64%), Gaps = 7/167 (4%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-QIWDTAG 72
+ K++++GDS VGK++L+ R+ +++ KATIG +F T+ V +DG +V Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNK 128
QERF+++ A+YRGA ++VYD+T SSF+++K W +E H + +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 129 CDL-DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIR 173
D +S + VS + + LA+ G + TSA ++ NV+ AFE + R
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
YL K++ +GDS VGK+ L R+ N+F+ T+G++F+ + V D G +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
V Q+WDTAG ERFR++T+A++R A G L+ +D+T + SF +V+ W +L +C+
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
+L+GNK DL R+V+ + + LAE+ G+ + ETSA NVE + E ++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ--VVDIDGKE-------- 62
YL K++ +GDS VGK+ L R+ N+F+ T+G++F+ + V D G +
Sbjct: 10 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFK 69
Query: 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAV 120
V Q+WDTAG ERFR++T+A++R A G L+ +D+T + SF +V+ W +L +C+
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP- 128
Query: 121 GRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172
+L+GNK DL R+V+ + + LAE+ G+ + ETSA NVE + E ++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++GDS VGK++L++++ +F + KATIG +F T+ V +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERF+++ A+YRGA ++V+D+T ++F ++ W +E +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
DL++ R V+T+ ++ + + + ETSA ++ NVE AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++GDS VGK++L++++ +F + KATIG +F T+ V +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERF+++ A+YRGA ++V+D+T ++F ++ W +E +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
DL++ R V+T+ ++ + + + ETSA ++ NVE AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++GDS VGK++L++++ +F + KATIG +F T+ V +D + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERF+++ A+YRGA ++V+D+T ++F ++ W +E +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
D ++ R V+T+ ++ + + + ETSA ++ NVE AF+ + R
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 104/165 (63%), Gaps = 6/165 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++GDS VGK++L++++ +F + KATIG +F T+ V +D + V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT----AVGRMLVGNKC 129
ERF+++ A+YRGA ++V+D+T ++F ++ W +E +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 130 DLDSIRDVSTEEGKSLA-EEEGLFFMETSALDSTNVEAAFEVVIR 173
DL++ R V+T+ ++ + + + ETSA ++ NVE AF+ + R
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 40/202 (19%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK------------- 61
+K VL+G+S+VGKS+++ R ++ F N+ TIG F T VV+++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 62 ------------------------EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT 97
+K IWDTAGQER+ ++ YYRGA A+VV+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 98 RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETS 157
++ D K W+ +L + + +LV NK D + + V E + A++ L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYII--ILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 158 ALDSTNVEAAFEVVIREIYSNI 179
A TN++ F ++ EIY NI
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K+V++G+ AVGKS+++ R+ + F + K TIGV+F + + ++ ++V+ +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
F A+T AYYRGA ++V+ T R SF+++ W E++ + LV NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
+ EE + LA+ L F TS + NV F+
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
E + A+ Y+R G L V+ IT SF + + E+ L D V +LVGNK DL+
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R VS EE K+ AE+ + ++ETSA NV+ F ++REI
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
E + A+ Y+R G L V+ IT SF + + E+ L D V +LVGNK DL+
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R VS EE K+ AE+ + ++ETSA NV+ F ++REI
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
E + A+ Y+R G L V+ IT SF + + E+ L D V +LVGNK DL+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R VS EE K+ AE+ + ++ETSA NV+ F ++REI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
E + A+ Y+R G L V+ IT SF + + E+ L D V +LVGNK DL+
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R VS EE K+ A++ + ++ETSA NV+ F ++REI
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + + E++ D+ V +LVGNKCDL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V T++ + LA G+ F+ETSA V+ AF ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDL 131
E + A+ Y+R G L+V+ IT SF + + E++ + + ++VGNK DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ R V EE +S AEE G+ ++ETSA NV+ F ++REI
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDL 131
E + A+ Y+R G L+V+ IT SF + + E++ + + ++VGNK DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 132 DSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ R V EE +S AEE G+ ++ETSA NV+ F ++REI
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K++++G VGKS L +F +EF + + T ++ +VV +DG+EV+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLD 132
E + A+ Y+R G L V+ IT SF + + E+ L D V +LVGNK DL+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R VS EE K+ AE+ + ++ETSA NV+ F ++REI
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + + E++ D+ V +LVGNK DL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V T++ + LA G+ F+ETSA V+ AF ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ QV ++D ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+F A+ Y + G +VY IT +S+F+ ++ E++ DT V +LVGNKCDL+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 134 IRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 121
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + KS+ ++ L + + SA + N E F + R++
Sbjct: 122 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 128
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + KS+ ++ L + + SA + N E F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 131
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 132 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ QV ++D ++ +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 64
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+F A+ Y + G +VY IT +S+F+ ++ E++ DT V +LVGNKCDL+
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 134 IRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+V++G VGK++L +F EF T+ + +++V + E + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSI 134
+ + ++ G G ++VY +T SF ++ ++L H T V +LVGNK DL
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R+V EGK LAE G FME+SA ++ + F VI+EI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ QV ++D ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+F A+ Y + G +VY IT +S+F+ ++ E++ DT V +LVGNKCDL+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 IRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIREI 175
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++ +D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ T+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 128
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + KS+ ++ L + + SA + N E F + R++
Sbjct: 129 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L +F + F TI ++ QV ++D ++ +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+F A+ Y + G +VY IT +S+F+ ++ E++ DT V +LVGNKCDL+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 134 IRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIREI 175
R V E+G++LA + F+E+SA NV F ++R+I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
++ + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ ATIGVE + E+K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE- 130
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDA 188
R V + + ++ L + + SA + N E F + R++ N + + S A
Sbjct: 131 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPA 183
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ T+GVE V + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-EVKAQIWDTAGQ 73
KIV++GD A GK++L + FA+ F K TIG++F + + + G V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRW---LEELTTHCDTAVGRMLVGNKCD 130
+ Y GA G L+VYDIT SF++++ W +++++ +T LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 131 LDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
L+ +R + E+ +E G SA +V F+ V EI
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ ATIGVE + E+K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE- 122
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V + + ++ L + + SA + N E F + R++ N
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 165
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ ATIGVE + E+K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDVKE- 123
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178
R V + + ++ L + + SA + N E F + R++ N
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 166
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 124
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + KS+ ++ L + + SA + N E F + R++
Sbjct: 125 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D+
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKD- 130
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + KS+ ++ L + + SA + N E F + R++
Sbjct: 131 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 187
R V + + + LA G+ ++ETSA VE AF ++REI + RK+ D
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPD 175
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R EF+ AT+GVE V + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 126
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 127 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
FK+VL+GD GK+ + R E + AT+GVE V + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+F + YY A A++++D+T R ++ +V W +L C+ + +L GNK D I
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-IPIVLCGNKVD---I 131
Query: 135 RDVSTEEGKSLA--EEEGLFFMETSALDSTNVEAAFEVVIREI 175
+D + KS+ ++ L + + SA + N E F + R++
Sbjct: 132 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
R V + + + LA G+ ++ETSA VE AF ++REI + RK+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKV 183
R V + + + LA G+ ++ETSA VE AF ++REI + RK+
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 80
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + + E++ D+ V +LVGNKCDL S
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V T++ + LA G+ F+ETSA V+ AF ++REI
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 80
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF + + E++ D+ V +LVGNKCDL +
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V T++ LA+ G+ F+ETSA VE AF ++REI
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIG-VEFQTQVVDIDGKEVKAQIWDTAGQ 73
+KI LIGD VGK+ ++R F+ N AT+G V +D G +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133
E+ + YY GA GA++ +D+T R + ++ RW++E ++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168
+ +S + + + + + E SA + N F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
K V +GD AVGK+ +L + N F ++ T+ F VV +DG V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + YRGA L+ + + ++S++++ K+WL EL H + +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 132 ---DSIRD------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIR 173
++D ++T +G+ L + G + ++E S+ NV+A F+ IR
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 67
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 27 KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F ++ F ++ TI + Q V ID + + I DTAGQE F A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSL 145
G L+V+ +T R SF+ + ++ ++ D +L+GNK DLD R V+ EEG+ L
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 146 AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
A + + +ME SA NV+ AF ++R I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 128
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + + E++ D+ V +LVGNK DL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V T++ + LA G+ F+ETSA V+ AF ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + + E++ D+ V +LVGNK DL S
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V T++ + LA G+ F+ETSA V+ AF ++REI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGK+ L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGN+CDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
K V +GD AVGK+ +L + N F ++ T+ F VV +DG V +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + YRGA ++ + + ++S+++V K+W+ EL H V +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 132 ---------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
++T +G+ L + G ++E S+ NV+A F+ I+ +
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVV 177
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F +I ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F +I ++ QVV IDG+ I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQE 68
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 127
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
R V + + + LA G+ ++ETSA VE AF ++RE
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KI ++G +VGKS+L +F +F ++ TI F T+++ ++G+E Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
+ Y G ++VY +T SF+ +K +L + MLVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
R +S EEGK+LAE F+E+SA ++ F +I E
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KI ++G +VGKS+L +F +F + TI F T+++ ++G+E Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
+ Y G ++VY +T SF+ +K +L + MLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
R +S EEGK+LAE F+E+SA ++ F +I E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y +L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
K
Sbjct: 181 PVK 183
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y +L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
K
Sbjct: 181 PVK 183
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
KIV++GD AVGK+ LL F++ E + T+ F + V+ +E +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y + L+ + + R+SFD++ +W E+ + DTA +LVG K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 141
Query: 132 DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 178
D DV+ +EG L ++ G + ++E S++ + FE + I+SN
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y +L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 124
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 180 SRK 182
K
Sbjct: 185 PVK 187
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD--IDGKEVKAQIWDTAGQ 73
K+VL+GD GK++LL FA F + T+ F+ +V+ + GK V IWDTAGQ
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
+ + + +Y A L+ +D+T +SFD++ RW E+ C V ++VG K DL
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLR 151
Query: 132 -----------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFE 169
+ + V+ G+ +A G + ++E SA NV A F+
Sbjct: 152 KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KI ++G +VGKS+L +F +F + TI F T+++ ++G+E Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
+ Y G ++VY +T SF+ +K +L + MLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
R +S EEGK+LAE F+E+SA ++ F +I E
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y +L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 122
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLE 67
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
KIV++GD AVGK+ LL F++ E + T+ F + V+ +E +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y + L+ + + R+SFD++ +W E+ + DTA +LVG K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA-KTVLVGLKVDLRK 140
Query: 132 DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 178
D DV+ +EG L ++ G + ++E S++ + FE + I+SN
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 2/160 (1%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KI ++G +VGKS+L +F +F + TI F T+++ ++G+E Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSI 134
+ Y G ++VY +T SF+ +K +L + MLVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174
R +S EEGK+LAE F+E+SA ++ F +I E
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNKCDL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYS 177
+D ++ +G ++A+E G + ++E SAL ++ F+ IR + S
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLS 178
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNK DL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
K
Sbjct: 181 PVK 183
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
K
Sbjct: 181 PVK 183
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
K V +GD AVGK+ +L + N+F ++ T+ F V +DG+ V +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVA-VDGQIVNLGLWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + YRGA ++ + + ++S+++V K+W+ EL V +LVG K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN-VPIVLVGTKLDLR 126
Query: 132 -------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNISRK 182
D +++ +G+ L ++ G ++E S+ NV+A F+ I+ + RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCD-TAVGRMLVGNKCDL- 131
+ + Y L+ + + +SF++V+ +W E+ HC T + +LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 132 ------DSIRD-----VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+ +RD ++ +G ++A E G + ++E SAL ++ F+ IR +
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNK DL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y L+ + + +SF++V+ +W E+ HC +LVG K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 132 ----DSIRD-----VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+ +RD ++ +G ++A E G + ++E SAL ++ F+ IR +
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K VL+GD AVGK++L+ + N + + T F + VV +DG+ V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCD---- 130
F + Y L+ + + SSF +V ++W+ E+ HC A +LVG + D
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDLRED 139
Query: 131 ------LDSIRD--VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
LD ++ V E K LAEE + ++E SAL N++ F+ I
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCD-TAVGRMLVGNKCDL- 131
+ + Y L+ + + +SF++V+ +W E+ HC T + +LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 132 ------DSIRD-----VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+ +RD ++ +G ++A E G + ++E SAL ++ F+ IR +
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 14/174 (8%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
K V +GD AVGK+ LL + N F ++ T+ F VV ++G V +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + YRGA ++ + + ++S+++V K+W+ EL H V +LVG K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 132 ---------DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
++T +G+ L + G ++E S+ NV+ F+ IR +
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 147
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 81
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 139
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 127
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 128 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLDS 133
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLRD 131
Query: 134 IRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ +W E+ C V +LVGNK DL
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 124
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 65 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 123
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 67
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ +W E+ C V +LVGNK DL
Sbjct: 68 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 126
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 127 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ +W E+ C V +LVGNK DL
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 124
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ +W E+ C V +LVGNK DL
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+ + G + VGKS L+ RF F T+ ++ Q ID + V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSV---KRWLEELTTHCDTAVGRMLVGNKCDLD 132
+ R G ++VYDIT R SF+ V K L+E+ + + +LVGNK DLD
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL--ILVGNKADLD 145
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
R VSTEEG+ LA E F E SA N+ F + RE+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 125
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 65
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 66 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 124
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 65 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 123
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+++ + G VGKS+L+ RF + F + T+ ++ QV+ D QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-----AVGRMLVGNKC 129
+F A+ ++VY IT R S + +K E++ C+ ++ MLVGNKC
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI---CEIKGDVESIPIMLVGNKC 119
Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
D R+V + E ++LA FMETSA + NV+ F+
Sbjct: 120 DESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N T+ + V+ +DGK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 147
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNK DL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++G VGKS L + +N F TI ++ QVV IDG+ I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDS 133
+ A+ Y R G L V+ I SF+ + ++ E++ D+ V +LVGNK DL +
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R V + + + LA G+ ++ETSA VE AF ++REI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
K
Sbjct: 181 PVK 183
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 120
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSNI 179
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SRK 182
K
Sbjct: 181 PVK 183
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KIV++GDS GK+ LL FA++ F N T+ E T +ID + ++ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+ V Y + L+ +DI+R + DSV K+W E+ C +LVG K DL +
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT- 141
Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN 163
DVST ++G ++A++ G ++E SAL S N
Sbjct: 142 -DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 123
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +D K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS 133
+ + Y L+ + + +S+++V+ +W E+ HC + +LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 134 IRD------------VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G +LA+E + + ++E SAL ++ F+ IR +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KIV++GDS GK+ LL FA++ F N T+ E T +ID + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+ V Y + L+ +DI+R + DSV K+W E+ C +LVG K DL +
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT- 125
Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN 163
DVST ++G ++A++ G ++E SAL S N
Sbjct: 126 -DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
KIV++GDS GK+ LL FA++ F N T+ E T +ID + ++ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+ V Y + L+ +DI+R + DSV K+W E+ C +LVG K DL +
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDLRT- 146
Query: 135 RDVST--------------EEGKSLAEEEG-LFFMETSALDSTN 163
DVST ++G ++A++ G ++E SAL S N
Sbjct: 147 -DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDLD 132
+ + Y L+ + + +SF++V+ +W E+ HC +T + +LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI--ILVGTKLDLR 147
Query: 133 SIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 37/195 (18%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 75 RFRAVTSAYYRGAVGALVVYDITRR-------------------SSFDSVK-RWLEELTT 114
+ + Y VG DIT R +SF++V+ +W E+
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 115 HC-DTAVGRMLVGNKCDLDSIRD------------VSTEEGKSLAEEEG-LFFMETSALD 160
HC +T + +LVG K DL +D ++ +G ++A+E G + ++E SAL
Sbjct: 125 HCPNTPI--ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 161 STNVEAAFEVVIREI 175
++ F+ IR +
Sbjct: 183 QRGLKTVFDEAIRAV 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
E + + Y L+ + + +SF V+ +W E+ HC +T + +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDL 271
Query: 132 DSIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
E + + Y L+ + + +SF V+ +W E+ HC +T + +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDL 271
Query: 132 DSIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
L K V++GD AVGK+ LL + N F T+ + V+ +DGK V +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHC-DTAVGRMLVGNKCDL 131
E + + Y L+ + + +SF V+ +W E+ HC +T + +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI--ILVGTKLDL 271
Query: 132 DSIRD------------VSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G ++A+E G + ++E SAL ++ F+ IR +
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F + T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL- 131
E + Y L+ + I S +++ +W E+ C V +LVGNK DL
Sbjct: 64 EDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 132 ---DSIRD--------VSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ R+ V EG+ +A G F +ME SA V FE+ R
Sbjct: 123 NDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +D K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS 133
+ + Y L+ + + +S+++V+ +W E+ HC + +LVG K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 134 IRD------------VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G +LA+E + + ++E SAL ++ F+ IR +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N F T+ + V+ +D K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS 133
+ + Y L+ + + +S+++V+ +W E+ HC + +LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 134 IRD------------VSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIREI 175
+D ++ +G +LA+E + + ++E SAL ++ F+ IR +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 27 KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F ++ F S+ TI + T++ +DG + I DTAGQE F A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSL 145
G L+V+ I R SF+ V + ++ D +LVGNK DL+S R V E +
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 146 AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+ + E SA NV+ AFE ++R +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 120
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 61
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 120
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 63
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++GD VGKS L +F + F + TI + +ID + + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
F A+ Y R G L+VY +T ++SF+ V R+ + + D + +LV NK DL
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
+R V+ ++GK +A + + ++ETSA D NV+ F ++R I
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ + DI DGK+V+ +WDTAGQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 142
Query: 132 --DSIR---------DVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ R V +EEG+ +A F ++E SA V FE+ R
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++GD VGKS L +F + F TI ++ +ID + + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
F A+ Y R G L+VY +T ++SF+ V R+ + + D + +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
+R V+ ++GK +A + + ++ETSA D NV+ F ++R I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++GD VGKS L +F + F + TI + +ID + + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
F A+ Y R G L+VY +T ++SF+ V R+ + + D + +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
+R V+ ++GK +A + + ++ETSA D NV+ F ++R I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+K+V++GD VGKS L +F + F TI + +ID + + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQE 77
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
F A+ Y R G L+VY +T ++SF+ V R+ + + D + +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFEVVIREI 175
+R V+ ++GK +A + + ++ETSA D NV+ F ++R I
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F++++F T+ F+ + DI DGK+V+ +WDTAGQ
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 83
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + Y L+ + I S +++ +W E+ H V +LVGNK DL
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLR 142
Query: 132 --DSIR---------DVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ R V +EEG+ +A F ++E SA V FE+ R
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFA-RNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG 72
L+++VL+GD VGK++L S FA + E D + + +G + + + +DG++ + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 73 QERFRAVTS--AYYRGAVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKC 129
E+ S + +G ++VY I R SF+S +L TH V +LVGNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 130 DLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169
DL R+VS EEG++ A F+ETSA NV FE
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ V DI DGK+V+ +WDTAG
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGL 66
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + I S +++ +W E+ C V +LVGNK DL
Sbjct: 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 125
Query: 133 S------------IRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ V EEG+ +A G F +ME SA V FE+ R
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL F+++EF T+ F+ V DI DGK+V+ +WDTAGQ
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV---FENYVADIEVDGKQVELALWDTAGQ 83
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + + S +++ ++W+ E+ C V +LV NK DL
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN-VPIILVANKKDLR 142
Query: 133 SIRDVSTE------------EGKSLAEE-EGLFFMETSALDSTNVEAAFEVVIR 173
S V TE +G+++A + ++E SA V FE R
Sbjct: 143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 64
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 123
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 65
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 73
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++++F T+ F+ + DI DGK+V+ +WDTAGQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV---FENYIADIEVDGKQVELALWDTAGQ 63
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + Y L+ + I S +++ ++W E+ C V +LVGNK DL
Sbjct: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122
Query: 132 --DSIR---------DVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ R V +EEG+ +A F ++E SA V FE+ R
Sbjct: 123 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 66
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 27 KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS L +F F TI +F + +++D +I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 87 AVGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL 145
G ++VY + + SF +K +++ V +LVGNK DL+S R+VS+ EG++L
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 146 AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
AEE G FMETSA T V+ F ++R++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 67
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 65
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 69
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 20/174 (11%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI--DGKEVKAQIWDTAGQ 73
K+V++GD A GK+ LL ++ +F T+ F+ V D+ DG+ V+ +WDTAGQ
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV---FENYVADVEVDGRRVELALWDTAGQ 68
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL- 131
E + + Y + L+ + I S ++V+ +W+ E+ C V +LVG K DL
Sbjct: 69 EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVGCKVDLR 127
Query: 132 -----------DSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVEAAFEVVIR 173
+ + V+++EG+S+A++ G + E SA V FE R
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S + + V+ I G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N+ S T+ + V+ I G+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQE 62
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLED 63
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL--- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ---------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
K V++GD AVGK+ LL + N+F S T+ + V+ I G+ ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGLE 66
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDL-- 131
+ + Y LV + + SSF++VK +W+ E+T HC +LVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 132 ----------DSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEVVI 172
+ + ++ E + LA + + + ++E SAL ++ F+ I
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFAR--NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIW--DTA 71
K+ ++G++ VGKS L+S F ++F + T GVE V I V +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 72 GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTT---HCDTAVGRMLVGNK 128
G + ++ S Y+ G A++V+D++ SF+S K W E L + + + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 129 CDLDSIR-DVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIREIYSNISRKV 183
DL R V + + A L F + SA + +A F + Y N KV
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKV 198
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
+ K V++GD AVGK+ LL +A + F T+ + V + GK+ ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT-VGGKQYLLGLYDTAGQ 76
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLD 132
E + + Y L+ + + +SF +VK W+ EL + V +L+G + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-VPFLLIGTQIDLR 135
Query: 133 ------------SIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVVIREIYSN 178
+ + E+G+ LA+E G ++E SAL ++ F+ I I +
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
++K++L+G VGKS L F E D G + +V +DG+E ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQ 59
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
+ R + ++VY +T + SF+ +L T V +LVGNK DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R+VS +EG++ A F+ETSA NV+A FE V+R+I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
++K++L+G VGKS L F E D G + +V +DG+E ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
+ R + ++VY +T + SF+ +L T V +LVGNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R+VS +EG++ A F+ETSA NV+A FE V+R+I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
++K++L+G VGKS L F E D G + +V +DG+E ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDRSIV-VDGEEASLMVYDIWEQ 64
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRMLVGNKCDLD 132
+ R + ++VY +T + SF+ +L T V +LVGNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 133 SIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
R+VS +EG++ A F+ETSA NV+A FE V+R+I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---QIW-- 68
+FK++L+G+S VGKS L F + DS + + + + +D +EV IW
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 69 -DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT---THCDTAVGRML 124
D G R + + L+V+ +T R SF V L L H D V +L
Sbjct: 83 GDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV--IL 135
Query: 125 VGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
VGNK DL R+VS EEG+ LA +ETSA N FE +R+I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15 FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
+++VLIG+ VGKS L + FA + DS+ + +G + + + +DG+ + +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLDMWE 96
Query: 70 TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
G+ + V AY L+VY IT R+SF+ +L T + +
Sbjct: 97 NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
LVGNK DL R+VS EG++ A F+ETSA NV+ FE ++R++
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15 FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
+++VLIG+ VGKS L + FA + DS+ + +G + + + +DG+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70 TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
G+ + V AY L+VY IT R+SF+ +L T + +
Sbjct: 66 NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
LVGNK DL R+VS EG++ A F+ETSA NV+ FE ++R++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15 FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
+++VLIG+ VGKS L + FA + DS+ + +G + + + +DG+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70 TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
G+ + V AY L+VY IT R+SF+ +L T + +
Sbjct: 66 NKGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
LVGNK DL R+VS EG++ A F+ETSA NV+ FE ++R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 15 FKIVLIGDSAVGKSNLLSRFA--RNEFDSNSKATIGVEFQTQVVDIDGKE---VKAQIWD 69
+++VLIG+ VGKS L + FA + DS+ + +G + + + +DG+ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 70 TAGQERF-----RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTA-VGRM 123
G+ + V AY L+VY IT R+SF+ +L T + +
Sbjct: 66 NKGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 124 LVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
LVGNK DL R+VS EG++ A F+ETSA NV+ FE ++R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT--- 70
+FK++L+G+S VGKS L F + D+ + + + + +D +EV ++D
Sbjct: 12 VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 71 --AG---QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT---THCDTAVGR 122
AG Q+ A+ L+V+ +T R SF V L L H D V
Sbjct: 72 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-- 122
Query: 123 MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+LVGNK DL R+VS EEG+ LA +ETSA N FE +R+I
Sbjct: 123 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT--- 70
+FK++L+G+S VGKS L F + D + + + + +D +EV ++D
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 71 --AG---QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT---THCDTAVGR 122
AG Q+ A+ L+V+ +T R SF V L L H D V
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-- 112
Query: 123 MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175
+LVGNK DL R+VS EEG+ LA +ETSA N FE +R+I
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+VL+GD GK+ +L A++ + T+ E T ++ + + V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+ V Y + L+ +DI+R + DS +K+W E+ +C + +L+G K DL +
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT- 145
Query: 135 RDVST--------------EEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
D+ST E+G ++A++ G ++E SA S E I I+
Sbjct: 146 -DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTA 197
Query: 180 SRKVLNSDA 188
S LN +
Sbjct: 198 SMLCLNKPS 206
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+VL+GD GK+ +L A++ + T+ E T ++ + + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+ V Y + L+ +DI+R + DS +K+W E+ +C + +L+G K DL +
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-TRVLLIGCKTDLRT- 129
Query: 135 RDVST--------------EEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
D+ST E+G ++A++ G ++E SA S E I I+
Sbjct: 130 -DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTA 181
Query: 180 SRKVLNSDA 188
S LN +
Sbjct: 182 SMLCLNKPS 190
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K+VL+GD GK+ +L A++ + T+ E T ++ + + V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134
+ V Y + L+ +DI+R + DS +K+W E+ +C + +L+G K DL +
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT- 128
Query: 135 RDVST--------------EEGKSLAEEEGL-FFMETSALDSTNVEAAFEVVIREIYSNI 179
D+ST E+G ++A++ G ++E SA S E I I+
Sbjct: 129 -DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTA 180
Query: 180 SRKVLNSDA 188
S LN +
Sbjct: 181 SMLCLNKPS 189
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 27 KSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86
KS+L+ RF + F TI ++ QV+ D QI DT G +F A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 87 AVGALVVYDITRRSSFD---SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK 143
++V+ +T + S + + + + ++ + + MLVGNKCD ++ R+V T E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED-IPVMLVGNKCD-ETQREVDTREAQ 137
Query: 144 SLAEEEGLFFMETSALDSTNVEAAF-EVVIREIYSNISRKVLNSDAYKA 191
++A+E FMETSA + NV+ F E++ E N+S LN D ++
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS---LNIDGKRS 183
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76
+ ++G GKS L +F F S + + ++ +D + V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDS 133
R Y A LVVY + R SFDS +LE L H ++ +L+GNK D+
Sbjct: 83 RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 134 IRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVEAAFEVVIRE 174
R V+ EG +LA G F E SA LD +V+ F +RE
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 133 SIRDVSTEE 141
+++ +E
Sbjct: 438 AMKPHEIQE 446
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K++++G GK+ +L +F+ NE ++ TIG + V++ + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 77
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
R+ + YY +VV D T R + L ++ H D G ++ NK D+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 135 RDVS 138
V+
Sbjct: 138 MTVA 141
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K++++G GK+ +L +F+ NE ++ TIG + V++ + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 78
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
R+ + YY +VV D T R + L ++ H D G ++ NK D+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 135 RDVS 138
V+
Sbjct: 139 MTVA 142
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 133 SIRDVSTEE 141
+++ +E
Sbjct: 129 AMKPHEIQE 137
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 133 SIRDVSTEE 141
+++ +E
Sbjct: 128 AMKPHEIQE 136
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K++++G GK+ +L +F+ NE S TIG + V++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
R+ + YY +VV D T R + L ++ H D G ++ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 RDVS 138
V+
Sbjct: 133 MTVA 136
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 133 SIRDVSTEEGKSLA 146
+++ +E L
Sbjct: 116 AMKPHEIQEKLGLT 129
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 133 SIRDVSTEEGKSLA 146
+++ +E L
Sbjct: 116 AMKPHEIQEKLGLT 129
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K++++G GK+ +L +F+ NE ++ TIG + V++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 72
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSI 134
R+ + YY +VV D T R + L ++ H D G ++ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 135 RDVS 138
V+
Sbjct: 133 MTVA 136
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
++ L+G GK+ ++ A +F + T+G + + V +IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQP 78
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
RFR++ Y RG + + D R ++ + L L + +++GNK DL +
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 134 IRD 136
D
Sbjct: 139 ALD 141
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
++ L+G GK+ ++ A +F+ + T+G + I V ++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 78
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
RFR++ Y RG + + D + ++ K L L + +++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 134 IRD 136
D
Sbjct: 139 ALD 141
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
++ L+G GK+ ++ A +F+ + T+G + I V ++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQP 87
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS 133
RFR++ Y RG + + D + ++ K L L + +++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 134 IRD 136
D
Sbjct: 148 ALD 150
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFD--SNSKATIGVE---FQTQVVDIDGKEVKAQIWDT 70
K+ ++G++ GK+ LL + + + AT+G++ + Q+ D +++ +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 71 AGQERFRAVTSAYYRGAVGALVVYDITR-RSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
AG+E F + + L VYD+++ ++ D+ K WL + ++ +LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 130 DL 131
D+
Sbjct: 121 DV 122
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFD--SNSKATIGVE---FQTQVVDIDGKEVKAQIWDT 70
K+ ++G++ GK+ LL + + + AT+G++ + Q+ D +++ +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 71 AGQERFRAVTSAYYRGAVGALVVYDITR-RSSFDSVKRWLEELTTHCDTAVGRMLVGNKC 129
AG+E F + + L VYD+++ ++ D+ K WL + ++ +LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 130 DL 131
D+
Sbjct: 123 DV 124
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+++++G GK+ +L +F + D+ S T+G +T ++ + K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-- 131
R+ Y+ G + V D R +R L+ L A +L+ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 132 ----DSIRDV 137
++IR+V
Sbjct: 132 ALSSNAIREV 141
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+ +G A GK+ +L + + + T+G +T + K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
R + YY G G + V D R D ++ L + + +L+ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L + E + + TIG +T + K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
R R++ YYR G + V D RS + ++ + + LV NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLP 114
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L + E + + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
R R++ YYR G + V D RS + ++ + + LV NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLP 131
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L + E + + TIG +T + K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLD 132
R R++ YYR G + V D RS + ++ + + LV NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLP 131
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 133 SIRDVSTEEGKSLA 146
+++ +E L
Sbjct: 118 AMKPHEIQEKLGLT 131
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 68
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 133 SIRDVSTEE 141
+++ +E
Sbjct: 129 AMKPHEIQE 137
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + + + T+G +T + K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL-D 132
+ R + YY G G + V D R D ++ L + + +L+ NK DL D
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 133 SIRDVSTEEGKSL 145
+++ +E L
Sbjct: 119 AMKPHEIQEKLGL 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+++++G GK+ +L +F + D+ S T+G +T ++ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
R+ Y+ G + V D R +R L+ L A +L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+++++G GK+ +L +F + D+ S T+G +T ++ + K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
R+ Y+ G + V D R +R L+ L A +L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLD 132
R R + Y++ G + V D R V L++ L AV +L NK DL
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV-LLLFANKQDLP 131
Query: 133 SIRDVS 138
+ +S
Sbjct: 132 NAMAIS 137
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
K++++G GK+ +L +F NE S TIG + VV K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
R+ + YY ++V D R K L + H D +L+ NK D+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+++G A GK+ +L + E + + TIG +T ++ + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
R + YY G + V D R D + L + + +LV NK DL +
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+++L + E + + TIG +T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
+ R + YY+ + V D R + L ++ + +LV NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 134 IRDVS 138
+S
Sbjct: 133 AMSIS 137
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + + TIG +T ++ K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
+ R + Y++ G + V D R + + L + + +LV NK DL +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + + TIG +T ++ K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
+ R + Y++ G + V D R + + L + + +LV NK DL +
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + + TIG +T ++ K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
+ R + Y++ G + V D R + + L + + +LV NK DL +
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + TIG +T ++ K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 75 RFRAVTSAYYRGAVGALVVYDITRR----SSFDSVKRWLEE 111
+ R + Y++ G + V D R S D +++ L+E
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + + TIG +T ++ K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
+ R + Y++ G + V D R + + L + + +LV NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + + TIG +T ++ K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSF----DSVKRWLEE 111
+ R + Y++ G + V D R D + R L E
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L R E +K TIG +T + K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCD 130
R YY + V D T + + + L + + +LV NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 26 GKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85
GK+ +L +F + D+ S T+G +T ++ + K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDL 131
G + V D R +R L+ L A +L+ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G A GK+ +L + E + + TIG +T ++ K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV-GNKCDLDS 133
+ R + Y++ G + V D R + + L + + +LV NK DL +
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQT-QVVDIDG-------KEVKAQ 66
K+ LIGD GK++LL + FD T G+ T Q +I G KE
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 67 IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKR-WLEELTTHCDTAVGR--- 122
WD GQE + A ++ + VY + S DS K WL H + G+
Sbjct: 102 FWDFGGQE----IMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLR----HIEKYGGKSPV 153
Query: 123 MLVGNKCD 130
++V NK D
Sbjct: 154 IVVMNKID 161
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L + E + + TIG F + V + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDL 131
R R++ YY G + V D RS + ++ + C+ A ++ NK DL
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA--WLVFANKQDL 130
Query: 132 D 132
Sbjct: 131 P 131
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L R E + TIG +T + K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGQT 57
Query: 75 RFRAVTSAYYRGAVGALVVYD 95
R YY + V D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVD 78
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+L+G GK+ LL + A + S+ T G ++ + + K +WD GQ +
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 73
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFD 103
R +Y+ + V D R F+
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+L+G GK+ LL + A + S+ T G ++ + + K +WD GQ +
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 72
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFD 103
R +Y+ + V D R F+
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
+I+++G GK+ +L R E + TIG +T + K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLT 59
Query: 75 RFRAVTSAYYRGAVGALVVYD 95
R YY + V D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVD 80
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+L+G GK+ LL + A + S+ T G ++ + + K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 60
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFD 103
R +Y+ + V D R F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 17 IVLIGDSAVGKSNLLSRF-ARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
++ +G GK+ ++++ N N TIG + + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK----FKSSSLSFTVFDMSGQGR 79
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLV---GNKCDLD 132
+R + YY+ + V D + R K L+ L H D R+ + NK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL- 138
Query: 133 SIRDVST 139
RD T
Sbjct: 139 --RDAVT 143
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+++G GK+ +L R E + TIG +T + K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVET----VTYKNLKFQVWDLGGLTS 63
Query: 76 FRAVTSAYYRGAVGALVVYD 95
R YY + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75
+I+L+G GK+ LL + A + S+ T G ++ + + K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWDIGGLRK 60
Query: 76 FRAVTSAYYRGAVGALVVYDITRRSSFD 103
R +Y+ + V D R F+
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
++ ++GD+ GKS+L+ RF + K T +++ +++ +DG+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQYKKEML-VDGQTHLVLIREEAG-- 63
Query: 75 RFRAVTSAYYRGAVGALV-VYDITRRSSFDSVKRWLEELTTHCDTAVGRM---LVG--NK 128
A + G A++ V+ + +SF +V R +L++ G + LVG ++
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 129 CDLDSIRDVSTEEGKSL-AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
S R V ++L A+ + + ET A NV+ F+ V +++
Sbjct: 120 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74
++ ++GD+ GKS+L+ RF + K T +++ +++ +DG+ I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQYKKEML-VDGQTHLVLIREEAG-- 63
Query: 75 RFRAVTSAYYRGAVGALV-VYDITRRSSFDSVKRWLEELTTHCDTAVGRM---LVG--NK 128
A + G A++ V+ + +SF +V R +L++ G + LVG ++
Sbjct: 64 ----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119
Query: 129 CDLDSIRDVSTEEGKSL-AEEEGLFFMETSALDSTNVEAAFEVVIREI 175
S R V ++L A+ + + ET A NV+ F+ V +++
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 17 IVLIGDSAVGKSNLLSRF--ARNEFDSNSKATIGVE--------FQTQVVDIDGKEVKAQ 66
+V+ G VGKS LL A+ E S T G+ F+ Q++D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG------ 223
Query: 67 IWDTAGQER----FRAVTSAYYRGAVGALVVY--DITRRSSFDSVKRWLEELTTHCDTAV 120
+ D ER +A+ + Y +G L++Y D + F LEE +
Sbjct: 224 LLDRPISERNEIEKQAILALRY---LGNLIIYIFDPSEHCGFP-----LEEQIHLFEEVH 275
Query: 121 GR------MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173
G ++V NK D+ ++ E +E+GL ++ SAL T ++ E +I+
Sbjct: 276 GEFKDLPFLVVINKIDVADEENIKRLE--KFVKEKGLNPIKISALKGTGIDLVKEEIIK 332
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSN--SKATIGVEFQTQVVDIDGKEVKAQI 67
+ F I+ +G++ +GKS L+ +F+ + GV+ Q+ D+ V+ ++
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI---GVEFQTQVVDIDGKEVKAQIWDTA 71
F I+++G + VGK+ + + AR +F+ K+ + G F+ V+ + Q+W
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 343
Query: 72 GQERFRAVTSAYYRGAVGALVVYD 95
GQ R A + GA A V++D
Sbjct: 344 GQ-RNNIPVIAQHTGADSASVIFD 366
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI---GVEFQTQVVDIDGKEVKAQIWDTA 71
F I+++G + VGK+ + + AR +F+ K+ + G F+ V+ + Q+W
Sbjct: 94 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 143
Query: 72 GQERFRAVTSAYYRGAVGALVVYD 95
GQ R A + GA A V++D
Sbjct: 144 GQ-RNNIPVIAQHTGADSASVIFD 166
>pdb|3L4C|A Chain A, Structural Basis Of Membrane-Targeting By Dock180
pdb|3L4C|B Chain B, Structural Basis Of Membrane-Targeting By Dock180
Length = 220
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 27 KSNLLSRFARNEFDSNSKATI-GVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85
++++ + +FD SK T VE V D DGK ++ I+ AG E S Y
Sbjct: 26 RNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIY- 84
Query: 86 GAVGALVVYDITRRSSFDSVK 106
Y + + F++VK
Sbjct: 85 --------YQVKQPRWFETVK 97
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI---GVEFQTQVVDIDGKEVKAQIWDTA 71
F I+++G + VGK+ + + AR +F+ K+ + G F+ V+ + Q+W
Sbjct: 100 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 149
Query: 72 GQERFRAVTSAYYRGAVGALVVYD 95
GQ R A + GA A V++D
Sbjct: 150 GQ-RNNIPVIAQHTGADSASVIFD 172
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI---GVEFQTQVVDIDGKEVKAQIWDTA 71
F I+++G + VGK+ + + AR +F+ K+ + G F+ V+ + Q+W
Sbjct: 99 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTFRAAAVE------QLQVW--- 148
Query: 72 GQERFRAVTSAYYRGAVGALVVYD 95
GQ R A + GA A V++D
Sbjct: 149 GQ-RNNIPVIAQHTGADSASVIFD 171
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 71 AGQERFRAVTSAYYRGAVGALVVYDI 96
GQ+ F +TS YY G + LV+ D+
Sbjct: 295 PGQQAFEKMTSGYYLGEIMRLVLLDL 320
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 LIGDSAVGKSNLLSRFARNEFDSNSKATI 47
L G A+G+ + R AR++ +SNSK +
Sbjct: 268 LAGTRALGRGPAIDRLARDDLESNSKEIV 296
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 LIGDSAVGKSNLLSRFARNEFDSNSKATI 47
L G A+G+ + R AR++ +SNSK +
Sbjct: 268 LAGTRALGRGPAIDRLARDDLESNSKEIV 296
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 LIGDSAVGKSNLLSRFARNEFDSNSKATI 47
L G A+G+ + R AR++ +SNSK +
Sbjct: 288 LAGTRALGRGPAIDRLARDDLESNSKEIV 316
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 LIGDSAVGKSNLLSRFARNEFDSNSKATI 47
L G A+G+ + R AR++ +SNSK +
Sbjct: 270 LAGTRALGRGPAIDRLARDDLESNSKEIV 298
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73
++V+ G GK+ ++++ + S AT+G +T + V ++D G
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGA 73
Query: 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD 117
++FR + YY + V D + VK ++ + H D
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 156 TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAEL 193
T A ++A +E + E+ S I LNS+ YK EL
Sbjct: 418 TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 156 TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAEL 193
T A ++A +E + E+ S I LNS+ YK EL
Sbjct: 404 TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,238,250
Number of Sequences: 62578
Number of extensions: 186617
Number of successful extensions: 1353
Number of sequences better than 100.0: 358
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 359
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)