Query 027703
Match_columns 220
No_of_seqs 115 out of 2270
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 13:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.1E-37 2.4E-42 225.8 21.2 179 7-185 2-181 (205)
2 KOG0098 GTPase Rab2, small G p 100.0 1.8E-34 3.8E-39 207.0 19.5 194 11-204 3-198 (216)
3 KOG0078 GTP-binding protein SE 100.0 2.7E-34 5.9E-39 211.0 20.8 168 10-177 8-175 (207)
4 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.1E-34 1.1E-38 208.8 19.8 177 4-180 4-180 (222)
5 KOG0092 GTPase Rab5/YPT51 and 100.0 4E-34 8.7E-39 206.6 17.2 167 11-177 2-168 (200)
6 KOG0394 Ras-related GTPase [Ge 100.0 1.5E-33 3.2E-38 201.8 17.2 199 10-220 5-210 (210)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.1E-33 1.3E-37 200.6 18.8 165 13-177 21-186 (221)
8 cd04121 Rab40 Rab40 subfamily. 100.0 2.2E-32 4.8E-37 205.7 22.7 166 11-177 3-168 (189)
9 KOG0080 GTPase Rab18, small G 100.0 4.2E-33 9.1E-38 195.2 17.1 169 9-177 6-175 (209)
10 cd04120 Rab12 Rab12 subfamily. 100.0 2.1E-32 4.6E-37 207.6 22.2 164 15-178 1-165 (202)
11 KOG0093 GTPase Rab3, small G p 100.0 4.9E-32 1.1E-36 187.1 16.8 176 5-180 12-187 (193)
12 cd01867 Rab8_Rab10_Rab13_like 100.0 3E-31 6.5E-36 196.3 22.0 165 12-176 1-165 (167)
13 cd04122 Rab14 Rab14 subfamily. 100.0 2.8E-31 6.1E-36 196.2 21.8 163 14-176 2-164 (166)
14 cd04117 Rab15 Rab15 subfamily. 100.0 3.3E-31 7.2E-36 194.9 20.9 160 15-174 1-160 (161)
15 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.2E-30 2.5E-35 192.8 22.0 164 13-176 1-164 (166)
16 PLN03110 Rab GTPase; Provision 100.0 1.8E-30 3.9E-35 199.7 23.7 174 5-178 3-176 (216)
17 KOG0079 GTP-binding protein H- 100.0 8.6E-32 1.9E-36 186.1 14.4 167 12-179 6-172 (198)
18 cd01865 Rab3 Rab3 subfamily. 100.0 1.8E-30 4E-35 191.7 22.2 162 15-176 2-163 (165)
19 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.2E-30 2.5E-35 195.4 21.2 162 11-174 2-178 (182)
20 KOG0095 GTPase Rab30, small G 100.0 3E-31 6.5E-36 183.8 16.3 205 10-219 3-210 (213)
21 cd01866 Rab2 Rab2 subfamily. 100.0 2.7E-30 5.9E-35 191.4 22.3 166 12-177 2-167 (168)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.9E-30 6.3E-35 199.2 23.1 171 5-177 4-189 (232)
23 cd01868 Rab11_like Rab11-like. 100.0 2.4E-30 5.1E-35 191.0 21.6 163 13-175 2-164 (165)
24 PF00071 Ras: Ras family; Int 100.0 3E-30 6.6E-35 189.8 21.7 161 16-176 1-161 (162)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.6E-30 5.5E-35 192.2 21.4 163 14-177 2-165 (172)
26 cd04133 Rop_like Rop subfamily 100.0 2.2E-30 4.8E-35 192.7 20.3 159 15-175 2-172 (176)
27 KOG0086 GTPase Rab4, small G p 100.0 5.8E-31 1.3E-35 183.0 15.7 171 8-178 3-173 (214)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.1E-30 9E-35 195.7 22.0 164 15-178 1-170 (201)
29 cd04110 Rab35 Rab35 subfamily. 100.0 9.6E-30 2.1E-34 193.4 23.6 166 11-177 3-168 (199)
30 cd04127 Rab27A Rab27a subfamil 100.0 5.2E-30 1.1E-34 191.8 21.8 166 12-177 2-178 (180)
31 cd04125 RabA_like RabA-like su 100.0 9.2E-30 2E-34 191.9 22.6 165 15-179 1-165 (188)
32 cd04131 Rnd Rnd subfamily. Th 100.0 5.4E-30 1.2E-34 191.3 20.9 158 15-174 2-174 (178)
33 cd04119 RJL RJL (RabJ-Like) su 100.0 6.5E-30 1.4E-34 188.7 20.9 162 15-176 1-167 (168)
34 cd01864 Rab19 Rab19 subfamily. 100.0 7.8E-30 1.7E-34 188.3 21.2 162 13-174 2-164 (165)
35 cd04113 Rab4 Rab4 subfamily. 100.0 9E-30 2E-34 187.1 20.5 160 15-174 1-160 (161)
36 PLN03108 Rab family protein; P 100.0 1.7E-29 3.8E-34 193.5 22.9 168 12-179 4-171 (210)
37 cd01875 RhoG RhoG subfamily. 100.0 1.2E-29 2.6E-34 191.7 21.4 162 14-177 3-178 (191)
38 cd04109 Rab28 Rab28 subfamily. 100.0 1.6E-29 3.5E-34 194.4 22.2 163 15-177 1-167 (215)
39 PLN03071 GTP-binding nuclear p 100.0 1.4E-29 3E-34 195.0 21.6 166 12-180 11-176 (219)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.7E-29 3.6E-34 189.4 20.5 162 15-177 1-167 (182)
41 cd04136 Rap_like Rap-like subf 100.0 1.6E-29 3.5E-34 185.9 20.1 160 15-175 2-162 (163)
42 cd04111 Rab39 Rab39 subfamily. 100.0 3.3E-29 7.1E-34 191.9 22.1 165 14-178 2-168 (211)
43 KOG0091 GTPase Rab39, small G 100.0 4.3E-30 9.2E-35 180.6 15.2 168 12-179 6-176 (213)
44 cd04112 Rab26 Rab26 subfamily. 100.0 4.4E-29 9.6E-34 188.6 21.4 164 15-178 1-165 (191)
45 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.6E-29 7.9E-34 186.5 20.5 159 14-174 1-173 (175)
46 cd04116 Rab9 Rab9 subfamily. 100.0 7.5E-29 1.6E-33 183.8 21.6 163 11-174 2-169 (170)
47 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 7.9E-29 1.7E-33 183.8 21.6 163 15-177 1-166 (170)
48 smart00175 RAB Rab subfamily o 100.0 7.9E-29 1.7E-33 182.4 21.4 163 15-177 1-163 (164)
49 cd00877 Ran Ran (Ras-related n 100.0 5.5E-29 1.2E-33 184.0 20.5 160 15-177 1-160 (166)
50 cd04175 Rap1 Rap1 subgroup. T 100.0 6.1E-29 1.3E-33 183.3 20.4 160 15-175 2-162 (164)
51 cd04140 ARHI_like ARHI subfami 100.0 6.9E-29 1.5E-33 183.3 20.3 159 15-174 2-163 (165)
52 cd04144 Ras2 Ras2 subfamily. 100.0 6.5E-29 1.4E-33 187.6 20.4 161 16-177 1-164 (190)
53 PTZ00369 Ras-like protein; Pro 100.0 1.1E-28 2.5E-33 186.0 21.6 164 14-178 5-169 (189)
54 cd01861 Rab6 Rab6 subfamily. 100.0 1.1E-28 2.4E-33 181.2 20.7 160 15-174 1-160 (161)
55 KOG0088 GTPase Rab21, small G 100.0 6E-30 1.3E-34 179.0 13.1 214 4-219 3-217 (218)
56 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.5E-28 3.3E-33 182.3 21.1 162 14-175 2-168 (170)
57 cd01860 Rab5_related Rab5-rela 100.0 2.2E-28 4.8E-33 179.9 21.5 162 14-175 1-162 (163)
58 cd04106 Rab23_lke Rab23-like s 100.0 1.8E-28 3.8E-33 180.3 20.7 158 15-173 1-160 (162)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-28 3.1E-33 181.1 20.2 160 15-175 2-162 (163)
60 smart00173 RAS Ras subfamily o 100.0 1.7E-28 3.6E-33 180.8 20.4 161 15-176 1-162 (164)
61 cd04126 Rab20 Rab20 subfamily. 100.0 1.8E-28 3.8E-33 188.2 21.0 158 15-177 1-191 (220)
62 PLN03118 Rab family protein; P 100.0 5E-28 1.1E-32 185.6 23.5 177 1-178 1-179 (211)
63 KOG0081 GTPase Rab27, small G 100.0 2.2E-30 4.7E-35 181.3 9.1 180 9-188 4-193 (219)
64 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.7E-28 5.9E-33 179.6 20.6 161 14-175 2-163 (164)
65 cd01871 Rac1_like Rac1-like su 100.0 2.3E-28 5.1E-33 181.9 19.8 159 14-174 1-173 (174)
66 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.4E-28 9.5E-33 177.9 21.0 159 15-175 2-161 (162)
67 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.8E-28 1E-32 186.0 21.2 161 15-177 2-177 (222)
68 cd04134 Rho3 Rho3 subfamily. 100.0 3.2E-28 6.9E-33 183.6 19.7 160 16-177 2-175 (189)
69 cd04123 Rab21 Rab21 subfamily. 100.0 8.4E-28 1.8E-32 176.4 21.3 161 15-175 1-161 (162)
70 cd04114 Rab30 Rab30 subfamily. 100.0 1.5E-27 3.2E-32 176.6 22.7 164 12-175 5-168 (169)
71 cd04124 RabL2 RabL2 subfamily. 100.0 9.8E-28 2.1E-32 176.5 20.7 159 15-177 1-159 (161)
72 cd04103 Centaurin_gamma Centau 100.0 5.9E-28 1.3E-32 177.0 18.9 153 15-174 1-157 (158)
73 smart00176 RAN Ran (Ras-relate 100.0 8.6E-28 1.9E-32 182.1 20.3 161 20-183 1-161 (200)
74 cd01862 Rab7 Rab7 subfamily. 100.0 1.6E-27 3.5E-32 176.8 21.4 164 15-178 1-169 (172)
75 cd01863 Rab18 Rab18 subfamily. 100.0 1.6E-27 3.4E-32 175.1 20.6 159 15-174 1-160 (161)
76 cd04142 RRP22 RRP22 subfamily. 100.0 1E-27 2.2E-32 181.8 19.9 163 15-177 1-175 (198)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.8E-27 6.2E-32 174.3 21.1 160 15-175 1-163 (164)
78 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.4E-30 1.8E-34 173.5 6.9 189 19-219 2-191 (192)
79 cd04132 Rho4_like Rho4-like su 100.0 3E-27 6.6E-32 177.9 21.0 161 15-177 1-168 (187)
80 cd04143 Rhes_like Rhes_like su 100.0 2.2E-27 4.7E-32 185.4 20.4 161 15-176 1-171 (247)
81 cd04146 RERG_RasL11_like RERG/ 100.0 1.5E-27 3.3E-32 176.0 18.4 159 16-175 1-163 (165)
82 cd01873 RhoBTB RhoBTB subfamil 100.0 2.4E-27 5.3E-32 179.2 19.8 158 14-174 2-194 (195)
83 cd04118 Rab24 Rab24 subfamily. 100.0 6.6E-27 1.4E-31 176.9 21.7 162 15-177 1-167 (193)
84 cd04177 RSR1 RSR1 subgroup. R 100.0 6E-27 1.3E-31 173.4 20.7 161 14-175 1-163 (168)
85 cd00154 Rab Rab family. Rab G 100.0 7.1E-27 1.5E-31 170.4 20.2 158 15-172 1-158 (159)
86 cd01892 Miro2 Miro2 subfamily. 100.0 3E-27 6.5E-32 175.2 18.1 163 12-176 2-166 (169)
87 cd04148 RGK RGK subfamily. Th 100.0 6.2E-27 1.4E-31 180.5 20.3 160 15-176 1-163 (221)
88 KOG0097 GTPase Rab14, small G 100.0 3.3E-27 7.2E-32 162.5 16.5 172 8-179 5-176 (215)
89 smart00174 RHO Rho (Ras homolo 100.0 5.7E-27 1.2E-31 174.3 18.9 158 17-176 1-172 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8.7E-27 1.9E-31 173.3 19.6 157 15-173 1-171 (173)
91 cd04135 Tc10 TC10 subfamily. 100.0 4.1E-26 8.9E-31 169.7 19.6 159 15-175 1-173 (174)
92 cd04139 RalA_RalB RalA/RalB su 99.9 8.7E-26 1.9E-30 166.0 20.8 161 15-176 1-162 (164)
93 cd00876 Ras Ras family. The R 99.9 5.6E-26 1.2E-30 166.3 19.3 158 16-174 1-159 (160)
94 cd01870 RhoA_like RhoA-like su 99.9 1.1E-25 2.3E-30 167.6 19.8 159 15-175 2-174 (175)
95 PTZ00132 GTP-binding nuclear p 99.9 1.8E-25 3.9E-30 171.9 21.2 172 9-183 4-175 (215)
96 cd04129 Rho2 Rho2 subfamily. 99.9 1.5E-25 3.2E-30 168.8 20.1 160 15-176 2-173 (187)
97 cd04137 RheB Rheb (Ras Homolog 99.9 3E-25 6.5E-30 166.0 20.6 162 15-177 2-164 (180)
98 cd04149 Arf6 Arf6 subfamily. 99.9 7.3E-26 1.6E-30 167.6 16.8 153 14-173 9-167 (168)
99 cd04158 ARD1 ARD1 subfamily. 99.9 7.7E-26 1.7E-30 167.7 17.0 156 16-178 1-163 (169)
100 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.3E-26 2.8E-31 171.0 12.2 153 16-173 1-163 (164)
101 KOG0395 Ras-related GTPase [Ge 99.9 1.4E-25 3.1E-30 168.9 17.6 164 13-177 2-166 (196)
102 PLN00223 ADP-ribosylation fact 99.9 1.8E-25 3.8E-30 167.4 17.5 157 14-177 17-179 (181)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.9E-25 4.2E-30 163.9 17.1 152 15-173 1-158 (159)
104 cd00157 Rho Rho (Ras homology) 99.9 4.3E-25 9.2E-30 163.6 19.2 157 15-173 1-170 (171)
105 cd04147 Ras_dva Ras-dva subfam 99.9 5.2E-25 1.1E-29 167.3 19.8 160 16-176 1-163 (198)
106 PTZ00133 ADP-ribosylation fact 99.9 4.6E-25 9.9E-30 165.4 18.2 157 14-177 17-179 (182)
107 smart00177 ARF ARF-like small 99.9 5.1E-25 1.1E-29 164.1 18.1 155 14-175 13-173 (175)
108 cd04154 Arl2 Arl2 subfamily. 99.9 3.7E-25 8E-30 164.6 16.8 159 8-173 8-172 (173)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.2E-24 2.7E-29 163.2 19.4 160 15-177 4-171 (183)
110 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.2E-24 2.6E-29 164.9 18.3 149 15-163 1-177 (202)
111 cd01893 Miro1 Miro1 subfamily. 99.9 3.4E-24 7.4E-29 158.3 18.9 158 15-175 1-163 (166)
112 COG1126 GlnQ ABC-type polar am 99.9 1.9E-27 4E-32 176.0 0.3 177 16-215 30-223 (240)
113 cd04157 Arl6 Arl6 subfamily. 99.9 1.9E-24 4.1E-29 158.7 15.8 152 16-173 1-161 (162)
114 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.7E-24 5.9E-29 159.1 15.4 151 16-173 1-166 (167)
115 cd00879 Sar1 Sar1 subfamily. 99.9 7.9E-24 1.7E-28 159.7 17.6 154 14-174 19-189 (190)
116 PF00025 Arf: ADP-ribosylation 99.9 8.9E-24 1.9E-28 157.4 17.3 157 11-174 11-174 (175)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 9.5E-24 2.1E-28 157.2 17.4 153 14-173 15-173 (174)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.4E-23 3.1E-28 153.9 16.6 152 16-173 1-159 (160)
119 KOG0393 Ras-related small GTPa 99.9 2.1E-24 4.6E-29 159.5 11.5 163 13-177 3-180 (198)
120 KOG0073 GTP-binding ADP-ribosy 99.9 2.1E-23 4.6E-28 147.0 16.0 163 8-177 10-179 (185)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.1E-23 6.6E-28 153.2 16.8 152 16-173 1-166 (167)
122 PLN00023 GTP-binding protein; 99.9 4.3E-23 9.4E-28 164.0 18.4 144 8-151 15-189 (334)
123 cd04151 Arl1 Arl1 subfamily. 99.9 3.6E-23 7.8E-28 151.6 15.9 151 16-173 1-157 (158)
124 smart00178 SAR Sar1p-like memb 99.9 6.8E-23 1.5E-27 153.9 16.9 155 13-174 16-183 (184)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.7E-23 1E-27 150.8 14.6 151 16-173 1-157 (158)
126 cd04159 Arl10_like Arl10-like 99.9 1.5E-22 3.3E-27 147.5 17.0 152 16-173 1-158 (159)
127 KOG4252 GTP-binding protein [S 99.9 1.2E-24 2.6E-29 155.5 5.0 170 11-181 17-186 (246)
128 PTZ00099 rab6; Provisional 99.9 6.5E-22 1.4E-26 147.3 18.5 141 37-177 3-143 (176)
129 COG1100 GTPase SAR1 and relate 99.9 1.7E-21 3.6E-26 150.1 20.4 169 14-182 5-191 (219)
130 TIGR00231 small_GTP small GTP- 99.9 1.6E-21 3.5E-26 141.7 18.7 158 14-172 1-160 (161)
131 cd01898 Obg Obg subfamily. Th 99.9 3.8E-22 8.3E-27 147.6 15.5 157 16-174 2-169 (170)
132 cd01897 NOG NOG1 is a nucleola 99.9 8.8E-22 1.9E-26 145.5 17.3 155 16-175 2-167 (168)
133 COG1120 FepC ABC-type cobalami 99.9 2.7E-24 5.8E-29 166.0 3.8 176 17-216 31-227 (258)
134 cd01878 HflX HflX subfamily. 99.9 4E-22 8.7E-27 152.1 15.6 158 11-174 38-203 (204)
135 cd04155 Arl3 Arl3 subfamily. 99.9 7.5E-22 1.6E-26 146.6 16.6 156 11-173 11-172 (173)
136 PRK12299 obgE GTPase CgtA; Rev 99.9 1.8E-21 3.9E-26 157.9 19.5 163 14-177 158-329 (335)
137 COG4175 ProV ABC-type proline/ 99.9 2.9E-24 6.3E-29 167.1 2.0 177 17-216 57-253 (386)
138 COG1135 AbcC ABC-type metal io 99.9 4.4E-24 9.6E-29 165.9 1.5 176 17-215 35-229 (339)
139 KOG0070 GTP-binding ADP-ribosy 99.9 3.7E-22 7.9E-27 144.2 11.3 158 13-177 16-179 (181)
140 cd01890 LepA LepA subfamily. 99.9 8.1E-21 1.8E-25 141.8 17.7 154 16-175 2-176 (179)
141 cd04171 SelB SelB subfamily. 99.9 3.2E-21 6.9E-26 141.7 15.1 154 16-173 2-163 (164)
142 COG1125 OpuBA ABC-type proline 99.9 2.2E-22 4.7E-27 152.5 6.6 177 17-216 30-224 (309)
143 TIGR02528 EutP ethanolamine ut 99.9 6.3E-21 1.4E-25 137.2 13.3 134 16-172 2-141 (142)
144 COG1124 DppF ABC-type dipeptid 99.9 1E-22 2.2E-27 153.6 3.3 176 16-215 35-229 (252)
145 COG1118 CysA ABC-type sulfate/ 99.9 1.5E-22 3.2E-27 157.2 3.4 175 17-215 31-225 (345)
146 cd00882 Ras_like_GTPase Ras-li 99.9 6.6E-20 1.4E-24 131.9 17.0 153 19-172 1-156 (157)
147 TIGR03156 GTP_HflX GTP-binding 99.9 2.8E-20 6E-25 152.1 16.3 156 11-174 186-350 (351)
148 KOG0075 GTP-binding ADP-ribosy 99.9 2.9E-21 6.4E-26 133.8 8.8 157 14-176 20-182 (186)
149 TIGR02729 Obg_CgtA Obg family 99.9 5.8E-20 1.3E-24 148.9 17.7 160 14-175 157-328 (329)
150 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.3E-20 1.4E-24 135.4 16.3 157 16-176 2-166 (168)
151 cd01881 Obg_like The Obg-like 99.9 1.9E-20 4E-25 139.2 13.4 155 19-174 1-175 (176)
152 COG3842 PotA ABC-type spermidi 99.9 8.6E-23 1.9E-27 164.3 0.8 178 17-217 34-226 (352)
153 COG0411 LivG ABC-type branched 99.9 1.3E-22 2.8E-27 153.1 1.6 185 16-217 32-239 (250)
154 COG1122 CbiO ABC-type cobalt t 99.9 3.1E-22 6.6E-27 154.2 3.5 176 16-216 32-227 (235)
155 PRK04213 GTP-binding protein; 99.8 8.9E-21 1.9E-25 144.3 11.5 153 12-177 7-193 (201)
156 cd01879 FeoB Ferrous iron tran 99.8 7.3E-20 1.6E-24 133.6 15.9 148 19-175 1-156 (158)
157 COG1116 TauB ABC-type nitrate/ 99.8 5.5E-22 1.2E-26 150.8 3.8 164 17-204 32-207 (248)
158 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 9.6E-22 2.1E-26 151.2 4.6 182 16-217 32-227 (254)
159 COG0410 LivF ABC-type branched 99.8 6.3E-22 1.4E-26 148.3 3.1 177 17-216 32-225 (237)
160 TIGR00436 era GTP-binding prot 99.8 1.7E-19 3.7E-24 143.2 16.8 155 16-177 2-165 (270)
161 COG1131 CcmA ABC-type multidru 99.8 7.8E-23 1.7E-27 163.5 -3.1 176 17-215 34-224 (293)
162 PF08477 Miro: Miro-like prote 99.8 6.3E-20 1.4E-24 128.0 12.0 114 16-130 1-119 (119)
163 COG3638 ABC-type phosphate/pho 99.8 4.3E-22 9.2E-27 149.4 0.8 86 131-216 148-236 (258)
164 KOG0071 GTP-binding ADP-ribosy 99.8 2.4E-19 5.2E-24 123.4 13.9 156 14-176 17-178 (180)
165 COG4598 HisP ABC-type histidin 99.8 2.5E-21 5.5E-26 139.7 4.2 180 17-215 35-239 (256)
166 COG3839 MalK ABC-type sugar tr 99.8 2.1E-21 4.5E-26 155.5 3.9 177 17-216 32-222 (338)
167 cd01891 TypA_BipA TypA (tyrosi 99.8 4E-19 8.8E-24 134.5 15.3 149 15-167 3-173 (194)
168 PRK15467 ethanolamine utilizat 99.8 4E-19 8.7E-24 130.1 14.7 140 16-177 3-148 (158)
169 PF02421 FeoB_N: Ferrous iron 99.8 1.1E-19 2.5E-24 131.1 11.6 148 15-171 1-156 (156)
170 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.3E-19 2E-23 147.0 18.8 152 12-177 201-361 (442)
171 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.1E-18 2.4E-23 127.0 16.9 146 15-175 2-156 (157)
172 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 3.2E-20 6.9E-25 134.1 7.8 171 12-185 8-178 (216)
173 COG4555 NatA ABC-type Na+ tran 99.8 8.3E-22 1.8E-26 144.5 -0.6 173 17-215 31-220 (245)
174 PRK13537 nodulation ABC transp 99.8 1.3E-21 2.8E-26 157.7 0.4 77 139-215 147-225 (306)
175 PRK15494 era GTPase Era; Provi 99.8 8.7E-19 1.9E-23 143.0 16.9 156 12-177 50-217 (339)
176 PRK11650 ugpC glycerol-3-phosp 99.8 2.4E-21 5.2E-26 158.8 1.8 77 139-215 143-222 (356)
177 PRK12297 obgE GTPase CgtA; Rev 99.8 3.2E-18 6.9E-23 142.4 20.3 161 15-180 159-331 (424)
178 PRK03003 GTP-binding protein D 99.8 6.9E-19 1.5E-23 149.8 16.3 175 13-194 210-399 (472)
179 COG1129 MglA ABC-type sugar tr 99.8 1.1E-20 2.4E-25 157.5 5.1 180 17-216 37-234 (500)
180 TIGR01188 drrA daunorubicin re 99.8 2.3E-21 4.9E-26 156.2 0.6 77 139-215 133-211 (302)
181 COG1123 ATPase components of v 99.8 7.8E-21 1.7E-25 159.5 3.8 179 16-215 319-517 (539)
182 TIGR01186 proV glycine betaine 99.8 3.2E-22 6.9E-27 163.8 -4.5 78 139-216 138-218 (363)
183 TIGR02314 ABC_MetN D-methionin 99.8 2.6E-21 5.6E-26 157.5 0.7 77 139-215 149-228 (343)
184 COG1117 PstB ABC-type phosphat 99.8 1.2E-21 2.6E-26 144.9 -1.1 180 17-215 36-235 (253)
185 PRK05291 trmE tRNA modificatio 99.8 1.1E-18 2.5E-23 147.2 16.6 149 13-177 214-371 (449)
186 PRK10851 sulfate/thiosulfate t 99.8 4.1E-21 8.8E-26 157.3 1.7 79 138-216 144-225 (353)
187 COG1127 Ttg2A ABC-type transpo 99.8 1.2E-20 2.7E-25 142.0 4.1 87 132-218 147-236 (263)
188 COG4152 ABC-type uncharacteriz 99.8 1.1E-21 2.5E-26 147.7 -1.6 178 17-216 31-218 (300)
189 PRK13536 nodulation factor exp 99.8 5E-22 1.1E-26 161.8 -4.1 78 138-215 180-259 (340)
190 cd00881 GTP_translation_factor 99.8 2.5E-18 5.4E-23 129.1 16.0 154 16-175 1-186 (189)
191 PRK13637 cbiO cobalt transport 99.8 1.3E-21 2.9E-26 156.5 -2.1 77 139-215 153-232 (287)
192 PRK13647 cbiO cobalt transport 99.8 1.8E-21 3.8E-26 154.8 -1.5 80 137-216 145-226 (274)
193 PRK13651 cobalt transporter AT 99.8 1.2E-21 2.5E-26 157.7 -2.5 77 139-215 174-252 (305)
194 TIGR03258 PhnT 2-aminoethylpho 99.8 3.6E-21 7.9E-26 157.9 0.3 78 139-216 146-227 (362)
195 PRK09536 btuD corrinoid ABC tr 99.8 7E-21 1.5E-25 157.7 1.9 78 139-216 148-227 (402)
196 PRK12296 obgE GTPase CgtA; Rev 99.8 3.9E-18 8.4E-23 143.7 18.2 162 14-178 159-342 (500)
197 PRK11058 GTPase HflX; Provisio 99.8 2.9E-18 6.3E-23 143.3 17.3 158 14-177 197-363 (426)
198 COG1134 TagH ABC-type polysacc 99.8 6E-21 1.3E-25 144.3 0.7 177 15-215 54-234 (249)
199 KOG3883 Ras family small GTPas 99.8 7.1E-18 1.5E-22 117.9 15.8 164 13-177 8-176 (198)
200 KOG0076 GTP-binding ADP-ribosy 99.8 2.6E-19 5.7E-24 127.6 8.8 161 14-178 17-189 (197)
201 PRK13634 cbiO cobalt transport 99.8 2.1E-21 4.5E-26 155.6 -2.2 77 139-215 154-233 (290)
202 PRK11432 fbpC ferric transport 99.8 6.1E-21 1.3E-25 156.0 0.5 77 139-215 145-224 (351)
203 TIGR03265 PhnT2 putative 2-ami 99.8 7.3E-21 1.6E-25 155.8 0.8 78 139-216 143-223 (353)
204 KOG1673 Ras GTPases [General f 99.8 1.6E-18 3.4E-23 121.4 12.3 168 9-177 15-187 (205)
205 cd01889 SelB_euk SelB subfamil 99.8 2.3E-18 4.9E-23 130.2 14.3 158 15-176 1-186 (192)
206 PRK11000 maltose/maltodextrin 99.8 1E-20 2.2E-25 156.0 1.5 77 139-215 142-221 (369)
207 cd03265 ABC_DrrA DrrA is the A 99.8 1.6E-20 3.6E-25 144.8 2.5 77 139-215 140-219 (220)
208 COG3840 ThiQ ABC-type thiamine 99.8 3.9E-20 8.5E-25 133.7 4.0 180 14-216 25-218 (231)
209 PRK09452 potA putrescine/sperm 99.8 1.4E-20 2.9E-25 155.1 1.6 78 139-216 153-233 (375)
210 PRK00454 engB GTP-binding prot 99.8 5.7E-18 1.2E-22 128.2 15.9 159 12-177 22-195 (196)
211 PRK13638 cbiO cobalt transport 99.8 3.5E-21 7.5E-26 153.0 -2.0 77 139-215 145-223 (271)
212 TIGR03415 ABC_choXWV_ATP choli 99.8 8.6E-21 1.9E-25 156.1 0.3 79 137-215 171-252 (382)
213 COG3845 ABC-type uncharacteriz 99.8 1.6E-19 3.5E-24 148.2 7.7 178 17-211 33-223 (501)
214 PRK03003 GTP-binding protein D 99.8 8.4E-18 1.8E-22 143.2 18.3 153 14-177 38-200 (472)
215 PRK12298 obgE GTPase CgtA; Rev 99.8 1E-17 2.2E-22 138.5 18.3 162 15-178 160-335 (390)
216 COG4148 ModC ABC-type molybdat 99.8 7.2E-20 1.6E-24 140.5 5.0 175 17-215 27-216 (352)
217 PRK13636 cbiO cobalt transport 99.8 5.3E-21 1.1E-25 152.8 -1.2 77 139-215 150-229 (283)
218 cd01894 EngA1 EngA1 subfamily. 99.8 5.7E-18 1.2E-22 123.4 14.9 145 18-174 1-156 (157)
219 TIGR02315 ABC_phnC phosphonate 99.8 6.6E-20 1.4E-24 143.5 4.8 77 139-215 154-233 (243)
220 TIGR01288 nodI ATP-binding ABC 99.8 1.6E-20 3.4E-25 151.4 1.2 77 139-215 144-222 (303)
221 cd03261 ABC_Org_Solvent_Resist 99.8 8.5E-21 1.8E-25 147.8 -0.7 77 139-215 145-224 (235)
222 TIGR01184 ntrCD nitrate transp 99.8 3.6E-20 7.8E-25 143.8 2.6 77 139-215 123-202 (230)
223 PRK13652 cbiO cobalt transport 99.8 8.3E-21 1.8E-25 151.2 -1.1 78 138-215 145-225 (277)
224 PRK13643 cbiO cobalt transport 99.8 7.1E-21 1.5E-25 152.3 -1.5 77 139-215 153-231 (288)
225 PRK11607 potG putrescine trans 99.8 2.2E-20 4.8E-25 154.0 1.4 77 139-215 158-237 (377)
226 COG4559 ABC-type hemin transpo 99.8 9.7E-20 2.1E-24 134.7 4.5 175 17-216 30-229 (259)
227 PRK13646 cbiO cobalt transport 99.8 8.2E-21 1.8E-25 151.9 -1.4 77 139-215 154-233 (286)
228 PRK13641 cbiO cobalt transport 99.8 4.9E-21 1.1E-25 153.2 -2.7 77 139-215 154-232 (287)
229 PRK13631 cbiO cobalt transport 99.8 9.4E-21 2E-25 153.4 -1.6 77 139-215 185-263 (320)
230 cd03256 ABC_PhnC_transporter A 99.8 8.2E-20 1.8E-24 142.8 3.8 77 139-215 153-232 (241)
231 PRK11153 metN DL-methionine tr 99.8 3.4E-21 7.4E-26 157.5 -4.2 77 139-215 149-228 (343)
232 PRK00089 era GTPase Era; Revie 99.8 1.2E-17 2.5E-22 134.3 16.2 158 15-177 6-172 (292)
233 cd03224 ABC_TM1139_LivF_branch 99.8 4E-20 8.7E-25 142.8 1.6 77 139-215 141-219 (222)
234 TIGR02142 modC_ABC molybdenum 99.8 7.3E-20 1.6E-24 150.4 3.2 77 139-215 140-219 (354)
235 cd03296 ABC_CysA_sulfate_impor 99.8 6.4E-20 1.4E-24 143.2 2.6 78 138-215 144-224 (239)
236 cd04163 Era Era subfamily. Er 99.8 2.1E-17 4.5E-22 121.2 15.8 156 14-174 3-167 (168)
237 cd03258 ABC_MetN_methionine_tr 99.8 4.6E-20 1E-24 143.5 1.7 78 139-216 149-229 (233)
238 PRK11144 modC molybdate transp 99.8 5.9E-20 1.3E-24 150.7 2.3 78 139-216 137-217 (352)
239 cd01895 EngA2 EngA2 subfamily. 99.8 3.8E-17 8.2E-22 120.7 17.1 155 14-174 2-173 (174)
240 TIGR03873 F420-0_ABC_ATP propo 99.8 1.2E-19 2.6E-24 143.1 3.8 77 139-215 146-224 (256)
241 PRK11231 fecE iron-dicitrate t 99.8 1.2E-19 2.6E-24 143.0 3.7 77 139-215 147-225 (255)
242 TIGR01393 lepA GTP-binding pro 99.8 2.9E-17 6.4E-22 142.6 18.7 157 14-176 3-180 (595)
243 PRK10253 iron-enterobactin tra 99.8 1.8E-19 3.9E-24 142.8 4.6 77 139-215 152-231 (265)
244 TIGR03594 GTPase_EngA ribosome 99.8 5.5E-17 1.2E-21 137.0 19.9 159 12-177 170-345 (429)
245 COG1159 Era GTPase [General fu 99.8 8.5E-18 1.8E-22 130.7 13.6 159 15-178 7-174 (298)
246 cd03218 ABC_YhbG The ABC trans 99.8 1.4E-20 3.1E-25 146.3 -1.8 77 139-215 142-220 (232)
247 cd03259 ABC_Carb_Solutes_like 99.8 6.5E-20 1.4E-24 140.8 1.8 72 139-210 139-213 (213)
248 PRK10070 glycine betaine trans 99.8 4.5E-20 9.8E-25 152.8 0.9 77 139-215 173-252 (400)
249 PRK13645 cbiO cobalt transport 99.8 2.1E-20 4.5E-25 149.8 -1.1 77 139-215 159-238 (289)
250 PRK11308 dppF dipeptide transp 99.8 4.9E-20 1.1E-24 149.6 1.0 77 139-215 163-242 (327)
251 COG2229 Predicted GTPase [Gene 99.8 1E-16 2.2E-21 116.0 17.8 162 7-174 3-176 (187)
252 TIGR03522 GldA_ABC_ATP gliding 99.8 3.6E-20 7.7E-25 149.2 -0.1 77 139-216 142-220 (301)
253 cd03219 ABC_Mj1267_LivG_branch 99.8 6.1E-20 1.3E-24 143.1 1.2 78 139-216 152-231 (236)
254 cd03226 ABC_cobalt_CbiO_domain 99.8 2.3E-19 4.9E-24 137.0 4.3 69 139-207 135-205 (205)
255 cd03260 ABC_PstB_phosphate_tra 99.8 3.8E-20 8.2E-25 143.5 -0.1 76 139-215 150-227 (227)
256 KOG0074 GTP-binding ADP-ribosy 99.8 4.1E-18 8.8E-23 117.6 9.9 160 12-176 15-179 (185)
257 COG1136 SalX ABC-type antimicr 99.8 3E-20 6.4E-25 141.0 -0.8 67 139-206 151-220 (226)
258 PRK11614 livF leucine/isoleuci 99.8 2.7E-20 5.9E-25 145.2 -1.0 77 139-215 146-224 (237)
259 cd01888 eIF2_gamma eIF2-gamma 99.8 1.8E-17 3.9E-22 126.3 14.4 159 15-175 1-198 (203)
260 PRK10575 iron-hydroxamate tran 99.8 2.1E-19 4.6E-24 142.3 4.0 78 138-215 155-235 (265)
261 COG0444 DppD ABC-type dipeptid 99.8 2.8E-19 6E-24 140.6 4.5 86 123-216 154-242 (316)
262 TIGR01187 potA spermidine/putr 99.8 5E-20 1.1E-24 149.7 0.1 77 139-215 109-188 (325)
263 PRK11022 dppD dipeptide transp 99.8 3.4E-20 7.4E-25 150.6 -0.9 77 139-215 162-241 (326)
264 cd03263 ABC_subfamily_A The AB 99.8 7.5E-20 1.6E-24 141.2 0.9 76 139-215 142-219 (220)
265 TIGR03771 anch_rpt_ABC anchore 99.8 1.6E-19 3.5E-24 139.5 2.8 77 138-215 121-199 (223)
266 cd03301 ABC_MalK_N The N-termi 99.8 5E-20 1.1E-24 141.5 -0.1 72 139-210 139-213 (213)
267 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.2E-19 2.5E-24 140.1 1.9 74 139-212 140-218 (220)
268 PRK15079 oligopeptide ABC tran 99.8 6E-20 1.3E-24 149.3 0.0 77 139-215 170-249 (331)
269 PRK09493 glnQ glutamine ABC tr 99.8 4.4E-20 9.5E-25 144.3 -0.8 77 139-215 145-223 (240)
270 PRK13650 cbiO cobalt transport 99.8 3.5E-20 7.7E-25 147.7 -1.4 76 139-215 149-227 (279)
271 TIGR03410 urea_trans_UrtE urea 99.8 2.9E-20 6.3E-25 144.4 -1.8 78 139-216 140-220 (230)
272 cd03298 ABC_ThiQ_thiamine_tran 99.8 5.9E-19 1.3E-23 135.3 5.3 73 138-210 136-211 (211)
273 cd03235 ABC_Metallic_Cations A 99.8 2.1E-19 4.5E-24 138.0 2.7 71 139-210 141-213 (213)
274 TIGR00487 IF-2 translation ini 99.8 5.9E-17 1.3E-21 140.1 18.1 153 13-173 86-247 (587)
275 TIGR00960 3a0501s02 Type II (G 99.8 2.1E-19 4.6E-24 138.3 2.7 68 139-206 147-216 (216)
276 PRK11124 artP arginine transpo 99.8 4.1E-20 8.9E-25 144.6 -1.4 78 139-216 150-229 (242)
277 cd01896 DRG The developmentall 99.8 9.6E-17 2.1E-21 124.6 17.4 151 16-175 2-225 (233)
278 PRK13639 cbiO cobalt transport 99.8 2.1E-20 4.5E-25 148.8 -3.2 77 139-215 146-224 (275)
279 cd03297 ABC_ModC_molybdenum_tr 99.8 2.2E-19 4.7E-24 138.0 2.6 72 139-210 140-214 (214)
280 PRK11247 ssuB aliphatic sulfon 99.8 6.1E-19 1.3E-23 138.8 5.1 75 139-213 142-219 (257)
281 PRK10895 lipopolysaccharide AB 99.8 1.2E-19 2.5E-24 142.0 0.9 77 139-215 146-224 (241)
282 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.9E-20 6.2E-25 147.6 -2.7 77 139-215 169-248 (269)
283 cd03266 ABC_NatA_sodium_export 99.8 3.5E-20 7.6E-25 142.8 -2.2 72 139-210 145-218 (218)
284 COG4161 ArtP ABC-type arginine 99.8 9.5E-19 2.1E-23 124.4 5.2 180 16-215 30-228 (242)
285 PRK14250 phosphate ABC transpo 99.8 1.8E-19 4E-24 140.8 1.8 77 139-215 140-219 (241)
286 TIGR03005 ectoine_ehuA ectoine 99.8 6.3E-20 1.4E-24 144.4 -0.9 77 139-215 155-234 (252)
287 PRK13633 cobalt transporter AT 99.8 8E-20 1.7E-24 145.8 -0.4 77 138-215 152-231 (280)
288 PRK09473 oppD oligopeptide tra 99.8 3.3E-20 7.2E-25 150.8 -2.7 77 139-215 170-249 (330)
289 PRK15093 antimicrobial peptide 99.8 1.5E-19 3.2E-24 147.2 1.1 77 139-215 167-246 (330)
290 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 5.1E-20 1.1E-24 143.6 -1.6 76 139-215 141-219 (236)
291 PRK11264 putative amino-acid A 99.8 4.3E-20 9.4E-25 145.2 -2.0 77 139-215 153-231 (250)
292 cd03225 ABC_cobalt_CbiO_domain 99.8 8.1E-20 1.8E-24 140.1 -0.6 67 139-205 143-211 (211)
293 TIGR00437 feoB ferrous iron tr 99.8 4.4E-17 9.6E-22 141.5 16.1 146 21-175 1-154 (591)
294 PRK10771 thiQ thiamine transpo 99.8 5.3E-19 1.2E-23 137.5 3.8 77 139-215 138-217 (232)
295 COG4608 AppF ABC-type oligopep 99.7 4.6E-19 1E-23 136.5 3.3 152 16-216 41-198 (268)
296 PRK13635 cbiO cobalt transport 99.7 5.7E-20 1.2E-24 146.5 -1.7 77 138-215 148-227 (279)
297 PRK11300 livG leucine/isoleuci 99.7 5E-19 1.1E-23 139.5 3.6 77 139-215 162-241 (255)
298 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.4E-19 3.1E-24 141.6 0.4 77 139-215 144-223 (242)
299 PRK10619 histidine/lysine/argi 99.7 5.7E-20 1.2E-24 145.0 -1.9 77 139-215 161-239 (257)
300 PRK13644 cbiO cobalt transport 99.7 5.4E-20 1.2E-24 146.3 -2.1 76 139-215 145-222 (274)
301 PRK13649 cbiO cobalt transport 99.7 5E-20 1.1E-24 147.1 -2.4 77 139-215 154-232 (280)
302 cd00880 Era_like Era (E. coli 99.7 4.6E-17 1E-21 118.2 13.4 151 19-174 1-162 (163)
303 PRK11831 putative ABC transpor 99.7 6.9E-20 1.5E-24 145.4 -1.8 77 139-215 152-231 (269)
304 TIGR00475 selB selenocysteine- 99.7 6.7E-17 1.5E-21 140.2 16.4 157 15-177 1-167 (581)
305 cd03264 ABC_drug_resistance_li 99.7 3.7E-20 8E-25 142.0 -3.4 71 139-210 139-211 (211)
306 TIGR01277 thiQ thiamine ABC tr 99.7 9.9E-19 2.2E-23 134.2 4.5 74 138-211 136-212 (213)
307 COG4604 CeuD ABC-type enteroch 99.7 3E-19 6.5E-24 130.7 1.5 175 17-216 30-224 (252)
308 PRK13548 hmuV hemin importer A 99.7 1.5E-19 3.2E-24 142.7 -0.1 77 139-215 143-228 (258)
309 KOG0072 GTP-binding ADP-ribosy 99.7 4.8E-18 1E-22 117.5 7.3 161 10-177 14-180 (182)
310 cd03269 ABC_putative_ATPase Th 99.7 3.2E-19 6.9E-24 136.7 1.6 72 139-210 137-210 (210)
311 PRK13642 cbiO cobalt transport 99.7 8.4E-20 1.8E-24 145.5 -1.7 76 139-215 149-227 (277)
312 PRK00093 GTP-binding protein D 99.7 1.5E-16 3.2E-21 134.6 17.8 146 15-173 2-159 (435)
313 PRK15056 manganese/iron transp 99.7 5.9E-19 1.3E-23 140.3 3.0 77 138-215 150-228 (272)
314 TIGR02770 nickel_nikD nickel i 99.7 5.8E-20 1.3E-24 142.7 -2.8 78 139-216 134-214 (230)
315 PRK09984 phosphonate/organopho 99.7 9.9E-19 2.2E-23 138.3 4.1 77 139-215 161-240 (262)
316 TIGR03411 urea_trans_UrtD urea 99.7 4.7E-19 1E-23 138.6 2.1 77 139-216 152-230 (242)
317 PRK11248 tauB taurine transpor 99.7 5.9E-19 1.3E-23 139.0 2.5 74 139-212 137-215 (255)
318 TIGR03598 GTPase_YsxC ribosome 99.7 9.4E-17 2E-21 120.0 14.3 146 12-164 16-178 (179)
319 CHL00189 infB translation init 99.7 1.7E-16 3.6E-21 139.4 17.9 156 13-175 243-409 (742)
320 COG4172 ABC-type uncharacteriz 99.7 8.1E-19 1.7E-23 141.0 3.0 178 16-216 315-515 (534)
321 PRK15439 autoinducer 2 ABC tra 99.7 9.2E-19 2E-23 150.6 3.4 77 139-215 149-227 (510)
322 cd03268 ABC_BcrA_bacitracin_re 99.7 4.7E-19 1E-23 135.5 1.4 71 140-210 136-208 (208)
323 PRK15112 antimicrobial peptide 99.7 2E-19 4.4E-24 142.6 -0.7 77 139-215 158-237 (267)
324 COG1137 YhbG ABC-type (unclass 99.7 6.9E-20 1.5E-24 134.3 -3.2 179 17-216 33-227 (243)
325 PRK09700 D-allose transporter 99.7 6.5E-19 1.4E-23 151.7 2.2 77 139-215 154-232 (510)
326 PRK11701 phnK phosphonate C-P 99.7 4.6E-19 1E-23 139.9 1.1 76 140-215 161-239 (258)
327 PRK10908 cell division protein 99.7 2.2E-19 4.8E-24 138.7 -0.7 70 139-208 146-217 (222)
328 PRK13648 cbiO cobalt transport 99.7 1.9E-19 4.1E-24 142.9 -1.2 76 139-215 151-229 (269)
329 TIGR02769 nickel_nikE nickel i 99.7 6.5E-19 1.4E-23 139.6 1.8 77 139-215 159-238 (265)
330 COG4167 SapF ABC-type antimicr 99.7 2.6E-18 5.6E-23 124.6 4.7 180 16-216 41-238 (267)
331 cd04105 SR_beta Signal recogni 99.7 1.6E-16 3.4E-21 121.0 14.8 116 16-134 2-124 (203)
332 PRK10762 D-ribose transporter 99.7 7E-19 1.5E-23 151.1 2.1 77 139-215 150-228 (501)
333 cd03292 ABC_FtsE_transporter F 99.7 1.3E-18 2.8E-23 133.7 3.3 68 139-206 145-214 (214)
334 PRK13545 tagH teichoic acids e 99.7 8.4E-19 1.8E-23 147.8 2.4 77 139-215 152-230 (549)
335 cd03214 ABC_Iron-Siderophores_ 99.7 1.3E-18 2.8E-23 130.1 3.1 149 16-210 27-180 (180)
336 PRK03695 vitamin B12-transport 99.7 1.2E-18 2.6E-23 136.7 2.9 77 139-215 135-220 (248)
337 cd03267 ABC_NatA_like Similar 99.7 2.4E-19 5.1E-24 139.8 -1.1 72 139-210 162-236 (236)
338 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 6.8E-19 1.5E-23 136.1 1.4 72 139-210 151-224 (224)
339 PRK15439 autoinducer 2 ABC tra 99.7 1.2E-18 2.7E-23 149.8 3.1 78 139-216 412-491 (510)
340 cd01876 YihA_EngB The YihA (En 99.7 1.5E-16 3.2E-21 117.0 13.7 150 16-174 1-169 (170)
341 PRK13546 teichoic acids export 99.7 8.3E-19 1.8E-23 138.5 1.8 77 139-215 152-230 (264)
342 COG1123 ATPase components of v 99.7 5.5E-19 1.2E-23 148.4 0.6 75 142-216 166-243 (539)
343 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 2.4E-19 5.3E-24 138.1 -1.4 67 139-206 149-218 (218)
344 PRK13549 xylose transporter AT 99.7 1.3E-18 2.8E-23 149.7 2.8 78 139-216 414-493 (506)
345 PRK13547 hmuV hemin importer A 99.7 2.7E-18 5.8E-23 136.3 4.3 77 139-215 154-242 (272)
346 cd03262 ABC_HisP_GlnQ_permease 99.7 4.4E-19 9.5E-24 136.2 -0.2 68 139-206 144-213 (213)
347 PRK10261 glutathione transport 99.7 6.9E-19 1.5E-23 154.4 0.9 76 140-215 473-551 (623)
348 PRK11288 araG L-arabinose tran 99.7 8.1E-19 1.8E-23 150.7 1.2 77 140-216 406-484 (501)
349 PRK13632 cbiO cobalt transport 99.7 3E-19 6.5E-24 141.9 -1.4 76 139-215 151-229 (271)
350 TIGR03594 GTPase_EngA ribosome 99.7 4.9E-16 1.1E-20 131.3 17.9 150 16-176 1-160 (429)
351 TIGR00972 3a0107s01c2 phosphat 99.7 1.9E-19 4E-24 141.3 -2.7 76 139-215 153-230 (247)
352 TIGR00968 3a0106s01 sulfate AB 99.7 1.4E-18 3.1E-23 135.5 2.2 77 139-215 139-218 (237)
353 PRK13549 xylose transporter AT 99.7 1.8E-18 3.9E-23 148.8 3.0 78 139-216 152-231 (506)
354 PRK13640 cbiO cobalt transport 99.7 2.7E-19 5.8E-24 142.9 -2.1 76 139-215 152-230 (282)
355 TIGR02673 FtsE cell division A 99.7 1.6E-18 3.5E-23 133.1 2.3 67 139-205 146-214 (214)
356 TIGR03740 galliderm_ABC gallid 99.7 1.2E-18 2.7E-23 134.6 1.6 76 139-214 133-210 (223)
357 PRK09554 feoB ferrous iron tra 99.7 6.6E-16 1.4E-20 137.3 19.0 154 14-176 3-168 (772)
358 cd03222 ABC_RNaseL_inhibitor T 99.7 1E-17 2.3E-22 124.2 6.4 129 15-213 26-159 (177)
359 PRK10418 nikD nickel transport 99.7 3.6E-19 7.7E-24 140.2 -1.5 77 139-215 149-228 (254)
360 PRK14268 phosphate ABC transpo 99.7 2.5E-19 5.5E-24 141.4 -2.5 76 139-215 163-240 (258)
361 COG2274 SunT ABC-type bacterio 99.7 6.4E-18 1.4E-22 148.3 6.0 76 139-216 618-695 (709)
362 cd03216 ABC_Carb_Monos_I This 99.7 1E-17 2.2E-22 123.3 6.2 133 16-208 28-162 (163)
363 PRK10982 galactose/methyl gala 99.7 8.6E-19 1.9E-23 150.2 0.5 77 139-215 143-221 (491)
364 PRK09518 bifunctional cytidyla 99.7 6.8E-16 1.5E-20 137.3 18.8 171 13-192 449-636 (712)
365 PRK09518 bifunctional cytidyla 99.7 7.8E-16 1.7E-20 136.9 19.2 156 11-177 272-437 (712)
366 cd03257 ABC_NikE_OppD_transpor 99.7 6.4E-19 1.4E-23 136.6 -0.5 72 139-210 154-228 (228)
367 PRK10744 pstB phosphate transp 99.7 4.6E-19 9.9E-24 140.1 -1.4 76 139-215 165-242 (260)
368 PRK09544 znuC high-affinity zi 99.7 5.2E-18 1.1E-22 133.2 4.1 76 139-215 129-207 (251)
369 PRK05306 infB translation init 99.7 7E-16 1.5E-20 136.6 17.8 154 12-174 288-450 (787)
370 TIGR02323 CP_lyasePhnK phospho 99.7 1.1E-18 2.4E-23 137.4 0.1 77 139-215 157-236 (253)
371 PRK10938 putative molybdenum t 99.7 1.4E-18 3.1E-23 148.9 0.7 77 139-215 144-222 (490)
372 PRK10419 nikE nickel transport 99.7 8.7E-19 1.9E-23 139.0 -0.6 77 139-215 160-239 (268)
373 PRK14270 phosphate ABC transpo 99.7 7.4E-19 1.6E-23 138.2 -1.0 76 139-215 156-233 (251)
374 TIGR02211 LolD_lipo_ex lipopro 99.7 6.9E-19 1.5E-23 135.9 -1.2 68 139-207 150-220 (221)
375 TIGR01978 sufC FeS assembly AT 99.7 1.6E-17 3.4E-22 130.1 6.4 78 139-216 153-233 (243)
376 PRK10584 putative ABC transpor 99.7 3.7E-18 8E-23 132.4 2.7 69 139-208 155-226 (228)
377 PRK10261 glutathione transport 99.7 2E-18 4.3E-23 151.6 1.3 77 139-215 177-256 (623)
378 PRK14273 phosphate ABC transpo 99.7 9.4E-19 2E-23 137.9 -0.7 77 139-216 159-237 (254)
379 PRK11176 lipid transporter ATP 99.7 2.5E-17 5.5E-22 144.1 8.1 178 16-215 371-565 (582)
380 COG1132 MdlB ABC-type multidru 99.7 1.5E-17 3.2E-22 145.0 6.6 179 15-216 356-551 (567)
381 PRK14257 phosphate ABC transpo 99.7 1.2E-18 2.6E-23 141.6 -0.3 74 141-215 236-311 (329)
382 cd03299 ABC_ModC_like Archeal 99.7 3.1E-18 6.7E-23 133.4 2.1 78 138-215 137-217 (235)
383 PRK11629 lolD lipoprotein tran 99.7 3.6E-18 7.8E-23 132.9 2.4 73 139-212 154-229 (233)
384 cd03230 ABC_DR_subfamily_A Thi 99.7 3.4E-17 7.3E-22 121.7 7.3 142 16-206 28-173 (173)
385 PRK09700 D-allose transporter 99.7 5.4E-18 1.2E-22 146.0 3.4 76 139-214 418-495 (510)
386 TIGR01257 rim_protein retinal- 99.7 3.4E-19 7.4E-24 169.5 -4.3 89 120-216 2068-2158(2272)
387 PRK05433 GTP-binding protein L 99.7 1.5E-15 3.2E-20 132.2 18.4 159 13-177 6-185 (600)
388 PRK14247 phosphate ABC transpo 99.7 4.3E-18 9.3E-23 133.8 2.4 76 139-215 155-232 (250)
389 PRK00093 GTP-binding protein D 99.7 1.1E-15 2.3E-20 129.4 17.1 158 12-177 171-345 (435)
390 PRK10762 D-ribose transporter 99.7 4.8E-18 1E-22 146.0 2.8 78 139-216 404-483 (501)
391 PRK14242 phosphate transporter 99.7 6.3E-19 1.4E-23 138.8 -2.4 77 139-216 158-236 (253)
392 cd03300 ABC_PotA_N PotA is an 99.7 5.9E-19 1.3E-23 137.2 -2.9 77 139-215 139-218 (232)
393 PRK15134 microcin C ABC transp 99.7 1.3E-18 2.8E-23 150.4 -1.2 77 139-215 165-244 (529)
394 COG4988 CydD ABC-type transpor 99.7 1.9E-17 4.1E-22 139.0 5.8 177 16-215 349-541 (559)
395 PF00009 GTP_EFTU: Elongation 99.7 4.6E-16 1E-20 117.2 12.8 159 13-175 2-186 (188)
396 TIGR03269 met_CoM_red_A2 methy 99.7 4.4E-18 9.6E-23 146.8 2.0 77 139-215 177-256 (520)
397 PRK14267 phosphate ABC transpo 99.7 2.9E-18 6.2E-23 135.1 0.6 76 139-215 158-235 (253)
398 cd03213 ABCG_EPDR ABCG transpo 99.7 3.7E-17 8E-22 123.7 6.6 155 16-210 37-194 (194)
399 COG2884 FtsE Predicted ATPase 99.7 1.5E-17 3.3E-22 121.1 4.3 177 17-212 31-221 (223)
400 PRK14238 phosphate transporter 99.7 1.6E-18 3.5E-23 137.6 -1.0 75 140-215 177-253 (271)
401 PRK14235 phosphate transporter 99.7 4.6E-18 1E-22 134.8 1.5 76 139-215 172-249 (267)
402 PRK15134 microcin C ABC transp 99.7 3.5E-18 7.6E-23 147.7 0.8 76 140-215 435-513 (529)
403 PF10662 PduV-EutP: Ethanolami 99.7 7.4E-16 1.6E-20 109.0 12.4 135 16-172 3-142 (143)
404 COG4586 ABC-type uncharacteriz 99.7 7.1E-18 1.5E-22 129.2 2.3 171 13-214 49-243 (325)
405 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 2.4E-17 5.2E-22 146.6 5.9 175 15-216 480-672 (686)
406 TIGR02633 xylG D-xylose ABC tr 99.7 1.1E-17 2.4E-22 143.8 3.6 77 139-215 150-228 (500)
407 PRK14256 phosphate ABC transpo 99.7 2.7E-18 5.8E-23 135.1 -0.2 76 139-215 157-234 (252)
408 cd03232 ABC_PDR_domain2 The pl 99.7 5.9E-17 1.3E-21 122.4 7.1 154 16-210 35-192 (192)
409 PRK14259 phosphate ABC transpo 99.7 5.1E-18 1.1E-22 134.7 1.2 77 139-216 163-252 (269)
410 PRK14274 phosphate ABC transpo 99.7 2E-18 4.3E-23 136.4 -1.3 76 139-215 164-241 (259)
411 cd03234 ABCG_White The White s 99.7 9.7E-18 2.1E-22 129.9 2.5 72 139-210 152-226 (226)
412 PRK14269 phosphate ABC transpo 99.7 3.4E-18 7.3E-23 134.1 -0.1 76 139-215 151-228 (246)
413 PRK14237 phosphate transporter 99.7 2.8E-18 6E-23 136.1 -0.6 76 139-215 172-249 (267)
414 COG0486 ThdF Predicted GTPase 99.7 2.3E-15 4.9E-20 123.7 16.3 154 13-178 216-378 (454)
415 PRK11174 cysteine/glutathione 99.7 3.6E-17 7.9E-22 143.2 6.2 79 136-216 491-571 (588)
416 TIGR02633 xylG D-xylose ABC tr 99.7 9.8E-18 2.1E-22 144.1 2.6 77 139-215 412-490 (500)
417 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 5.6E-17 1.2E-21 144.8 7.4 176 16-216 507-699 (710)
418 cd03215 ABC_Carb_Monos_II This 99.7 5.4E-17 1.2E-21 121.6 6.1 150 16-206 28-182 (182)
419 PRK14241 phosphate transporter 99.7 3.2E-18 6.9E-23 135.2 -0.7 76 139-215 157-240 (258)
420 PRK10982 galactose/methyl gala 99.7 1E-17 2.2E-22 143.6 2.4 76 139-214 400-477 (491)
421 cd03246 ABCC_Protease_Secretio 99.7 5.3E-17 1.1E-21 120.7 5.9 142 16-206 30-173 (173)
422 KOG0058 Peptide exporter, ABC 99.7 8.1E-17 1.8E-21 137.9 7.6 169 16-215 496-689 (716)
423 COG1160 Predicted GTPases [Gen 99.7 1.9E-15 4E-20 123.9 15.2 151 15-175 4-164 (444)
424 PRK14239 phosphate transporter 99.7 2.4E-18 5.3E-23 135.4 -1.6 76 139-215 157-234 (252)
425 TIGR03269 met_CoM_red_A2 methy 99.7 6.1E-18 1.3E-22 146.0 0.7 77 139-215 436-515 (520)
426 PRK14262 phosphate ABC transpo 99.7 2.1E-18 4.6E-23 135.6 -2.1 76 139-215 155-232 (250)
427 PRK09580 sufC cysteine desulfu 99.7 6.9E-17 1.5E-21 126.8 6.3 77 137-213 152-231 (248)
428 cd03289 ABCC_CFTR2 The CFTR su 99.7 1.4E-16 3E-21 126.4 8.1 78 138-217 146-225 (275)
429 PRK14251 phosphate ABC transpo 99.7 3.7E-18 8E-23 134.3 -0.9 76 139-215 156-233 (251)
430 PRK14248 phosphate ABC transpo 99.7 4.8E-18 1E-22 134.8 -0.4 76 139-215 173-250 (268)
431 KOG0057 Mitochondrial Fe/S clu 99.7 7.6E-17 1.7E-21 134.0 6.6 172 15-216 379-573 (591)
432 PRK14245 phosphate ABC transpo 99.7 3.7E-18 8.1E-23 134.2 -1.1 76 139-215 155-232 (250)
433 TIGR00483 EF-1_alpha translati 99.7 1.8E-15 4E-20 127.5 15.0 155 10-168 3-199 (426)
434 COG1101 PhnK ABC-type uncharac 99.7 1.9E-17 4E-22 122.9 2.5 172 17-213 35-234 (263)
435 PRK15177 Vi polysaccharide exp 99.7 4.9E-18 1.1E-22 130.2 -0.7 76 139-215 113-190 (213)
436 COG4987 CydC ABC-type transpor 99.7 6E-17 1.3E-21 134.4 5.5 174 15-216 365-560 (573)
437 COG1119 ModF ABC-type molybden 99.7 4.6E-18 9.9E-23 128.7 -1.0 186 8-211 51-256 (257)
438 TIGR00491 aIF-2 translation in 99.7 3.2E-15 7E-20 129.3 16.4 154 16-176 6-216 (590)
439 TIGR01193 bacteriocin_ABC ABC- 99.7 9.1E-17 2E-21 143.4 7.0 177 16-215 502-695 (708)
440 KOG0055 Multidrug/pheromone ex 99.7 4.6E-17 1E-21 146.6 5.0 176 15-216 380-575 (1228)
441 PRK11288 araG L-arabinose tran 99.7 2.2E-17 4.7E-22 141.9 2.8 74 139-212 149-224 (501)
442 cd03229 ABC_Class3 This class 99.7 7.6E-17 1.7E-21 120.4 5.4 146 16-205 28-178 (178)
443 TIGR03375 type_I_sec_LssB type 99.7 5.9E-17 1.3E-21 144.3 5.6 177 16-216 493-687 (694)
444 PRK14275 phosphate ABC transpo 99.7 5E-18 1.1E-22 135.8 -1.2 75 140-215 192-268 (286)
445 PRK14243 phosphate transporter 99.7 9.6E-18 2.1E-22 132.8 0.4 77 139-216 160-247 (264)
446 PRK14258 phosphate ABC transpo 99.7 5.6E-18 1.2E-22 133.9 -1.2 77 139-215 159-243 (261)
447 PRK14263 phosphate ABC transpo 99.7 7.5E-18 1.6E-22 133.1 -0.5 76 139-215 158-243 (261)
448 PLN03211 ABC transporter G-25; 99.7 3.4E-18 7.3E-23 150.3 -2.8 85 131-215 207-294 (659)
449 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.3E-16 2.8E-21 115.0 5.9 115 16-205 28-144 (144)
450 PRK14272 phosphate ABC transpo 99.7 6.8E-18 1.5E-22 132.9 -1.0 75 140-215 158-234 (252)
451 cd03217 ABC_FeS_Assembly ABC-t 99.7 1.4E-17 3.1E-22 126.5 0.8 75 138-212 112-189 (200)
452 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 2E-17 4.3E-22 129.1 1.6 75 139-215 148-224 (238)
453 cd03251 ABCC_MsbA MsbA is an e 99.7 1.8E-16 4E-21 123.4 7.0 76 138-215 146-223 (234)
454 PRK14254 phosphate ABC transpo 99.7 6.1E-18 1.3E-22 135.2 -1.5 76 139-215 189-267 (285)
455 PRK14240 phosphate transporter 99.7 4.8E-18 1E-22 133.6 -2.1 76 139-215 155-232 (250)
456 cd03252 ABCC_Hemolysin The ABC 99.7 4E-18 8.7E-23 133.0 -2.6 75 139-215 147-223 (237)
457 PRK14261 phosphate ABC transpo 99.7 1.5E-17 3.3E-22 130.9 0.7 74 141-215 160-235 (253)
458 TIGR01257 rim_protein retinal- 99.7 2.6E-18 5.7E-23 163.5 -4.5 75 140-215 1071-1147(2272)
459 PRK14253 phosphate ABC transpo 99.7 7.4E-18 1.6E-22 132.4 -1.3 76 139-215 154-231 (249)
460 PRK14244 phosphate ABC transpo 99.7 4E-18 8.7E-23 134.1 -2.9 76 139-215 158-235 (251)
461 PRK14271 phosphate ABC transpo 99.7 6.1E-18 1.3E-22 134.7 -2.0 75 140-215 173-249 (276)
462 PRK14249 phosphate ABC transpo 99.7 1.7E-17 3.6E-22 130.5 0.5 76 139-215 156-233 (251)
463 CHL00131 ycf16 sulfate ABC tra 99.7 2.7E-16 5.9E-21 123.8 7.4 77 139-215 160-239 (252)
464 PRK14265 phosphate ABC transpo 99.7 1.1E-17 2.3E-22 133.1 -0.6 77 139-216 170-257 (274)
465 cd03233 ABC_PDR_domain1 The pl 99.7 7.4E-17 1.6E-21 122.8 3.9 163 16-210 35-202 (202)
466 TIGR01846 type_I_sec_HlyB type 99.6 1.8E-16 3.9E-21 141.2 6.9 177 16-215 485-678 (694)
467 PRK15064 ABC transporter ATP-b 99.6 7.5E-17 1.6E-21 139.5 4.2 169 16-215 347-523 (530)
468 cd03237 ABC_RNaseL_inhibitor_d 99.6 8.7E-17 1.9E-21 125.8 4.0 66 139-204 124-192 (246)
469 cd03369 ABCC_NFT1 Domain 2 of 99.6 1.2E-16 2.6E-21 122.1 4.7 73 138-212 133-207 (207)
470 PRK14266 phosphate ABC transpo 99.6 2E-17 4.4E-22 130.0 0.4 75 140-215 156-232 (250)
471 PRK14236 phosphate transporter 99.6 1.1E-17 2.3E-22 133.1 -1.3 76 139-215 177-254 (272)
472 PRK14255 phosphate ABC transpo 99.6 8E-18 1.7E-22 132.4 -2.0 76 139-215 157-234 (252)
473 PRK10790 putative multidrug tr 99.6 2.3E-16 4.9E-21 138.3 6.8 77 137-215 483-561 (592)
474 cd03245 ABCC_bacteriocin_expor 99.6 1.1E-16 2.4E-21 123.5 4.3 70 139-210 149-220 (220)
475 COG4107 PhnK ABC-type phosphon 99.6 2.5E-17 5.3E-22 118.6 0.4 180 17-215 35-239 (258)
476 TIGR01842 type_I_sec_PrtD type 99.6 2.1E-16 4.6E-21 137.1 6.4 78 137-215 461-540 (544)
477 TIGR00958 3a01208 Conjugate Tr 99.6 1.9E-16 4.1E-21 141.2 6.0 75 138-216 625-701 (711)
478 PRK10218 GTP-binding protein; 99.6 2.4E-14 5.2E-19 124.2 18.6 160 13-176 4-195 (607)
479 cd04168 TetM_like Tet(M)-like 99.6 3.5E-14 7.6E-19 110.5 17.8 114 16-133 1-130 (237)
480 PRK13657 cyclic beta-1,2-gluca 99.6 2.1E-16 4.6E-21 138.3 5.8 78 136-215 477-556 (588)
481 PRK04000 translation initiatio 99.6 7.4E-15 1.6E-19 122.9 14.6 164 10-176 5-201 (411)
482 PRK11160 cysteine/glutathione 99.6 1.6E-16 3.4E-21 138.6 4.7 76 138-215 483-560 (574)
483 cd03247 ABCC_cytochrome_bd The 99.6 2.4E-16 5.1E-21 117.7 5.0 147 16-210 30-178 (178)
484 COG4181 Predicted ABC-type tra 99.6 1.4E-16 3.1E-21 114.3 3.6 170 15-209 37-227 (228)
485 cd03254 ABCC_Glucan_exporter_l 99.6 1.4E-17 3.1E-22 129.2 -1.7 75 139-215 148-224 (229)
486 cd03253 ABCC_ATM1_transporter 99.6 3.1E-16 6.8E-21 122.2 5.5 75 139-215 146-222 (236)
487 TIGR03680 eif2g_arch translati 99.6 7.9E-15 1.7E-19 122.7 14.2 162 12-175 2-195 (406)
488 TIGR02203 MsbA_lipidA lipid A 99.6 5.8E-16 1.2E-20 135.3 7.4 75 139-215 478-554 (571)
489 PRK14260 phosphate ABC transpo 99.6 2.6E-17 5.6E-22 130.0 -1.1 76 139-215 159-241 (259)
490 PRK14252 phosphate ABC transpo 99.6 3.4E-17 7.4E-22 129.8 -0.5 76 139-215 170-247 (265)
491 PLN03232 ABC transporter C fam 99.6 4.7E-16 1E-20 147.6 6.7 176 16-216 1264-1457(1495)
492 PRK12317 elongation factor 1-a 99.6 1.1E-14 2.3E-19 122.8 14.2 154 11-168 3-197 (425)
493 PRK10636 putative ABC transpor 99.6 7.6E-17 1.6E-21 141.8 1.0 72 141-215 441-515 (638)
494 cd03236 ABC_RNaseL_inhibitor_d 99.6 2.6E-16 5.6E-21 123.7 3.9 74 138-212 147-222 (255)
495 PRK10247 putative ABC transpor 99.6 3.9E-16 8.5E-21 120.8 4.8 74 139-213 146-223 (225)
496 COG4525 TauB ABC-type taurine 99.6 1.9E-16 4.1E-21 116.0 2.8 173 16-212 33-219 (259)
497 COG4619 ABC-type uncharacteriz 99.6 2.8E-16 6.1E-21 112.4 3.6 168 15-206 30-212 (223)
498 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.7E-14 3.7E-19 110.3 13.5 147 16-167 1-185 (208)
499 cd03244 ABCC_MRP_domain2 Domai 99.6 1.5E-16 3.3E-21 122.8 2.2 72 139-212 148-221 (221)
500 TIGR01394 TypA_BipA GTP-bindin 99.6 2.2E-14 4.9E-19 124.5 15.6 155 16-176 3-191 (594)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=225.83 Aligned_cols=179 Identities=52% Similarity=0.830 Sum_probs=169.1
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
++...++.+||.++|.+|||||+|+.++.++.|+..+..|+++++...++.++++.+.+++|||.|+++|+.....||+.
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe-EEEeccCCCCCHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNVE 165 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 165 (220)
++++|+|||+++..||+.+..|+.++.++...+.|.++||||+|+...+.++.+++..++...+++ +++|||+++.|++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 999999999999999999999999999998888999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcC
Q 027703 166 AAFEVVIREIYSNISRKVLN 185 (220)
Q Consensus 166 ~l~~~l~~~~~~~~~~~~~~ 185 (220)
+.|..+...+..........
T Consensus 162 ~~F~~la~~lk~~~~~~~~~ 181 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKW 181 (205)
T ss_pred HHHHHHHHHHHHhcccCCCC
Confidence 99999999888765543333
No 2
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=206.97 Aligned_cols=194 Identities=48% Similarity=0.744 Sum_probs=171.9
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
..+.+|+.++|..|||||+|+.+++...|.+.++.|++++.-...++++++.+++++|||.|++.+.+....|++.+.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++|||++.+++|..+..|+.++.....+++.++++|||+||...|+++.+|++++++++++++++|||+++.|+++.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHH--HhhhhhcCcchhhhccccceeeeeecC
Q 027703 171 VIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDG 204 (220)
Q Consensus 171 l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G 204 (220)
....+.. +-.+...++........++.+-.....
T Consensus 163 ta~~Iy~~~q~g~~~~~~~~k~k~k~~p~~~~~~~~ 198 (216)
T KOG0098|consen 163 TAKEIYRKIQDGVFDDINESKGKIKIGPQIRRIRVS 198 (216)
T ss_pred HHHHHHHHHHhcccccccccccceeecccccccccC
Confidence 8887765 333444554444423345444443333
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=211.05 Aligned_cols=168 Identities=50% Similarity=0.914 Sum_probs=163.8
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
..+..+||.++|.+|||||+++.++....|...+..|+++++...++..++..+.+++|||.|+.++......|++.|.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|||++++.+|+.+..|+..+.....+..|.++||||+|+...|+++.+.+.+++.+.++.|++|||+++.|+.+.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
.|.+.+.+
T Consensus 168 ~La~~i~~ 175 (207)
T KOG0078|consen 168 SLARDILQ 175 (207)
T ss_pred HHHHHHHh
Confidence 99998886
No 4
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-34 Score=208.80 Aligned_cols=177 Identities=68% Similarity=1.062 Sum_probs=167.9
Q ss_pred CCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh
Q 027703 4 EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY 83 (220)
Q Consensus 4 ~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~ 83 (220)
....+++-++.+||+++|.+|+|||-|+.++..++|......|+++++.+..+.++++.+..++|||.|+++++.....|
T Consensus 4 ~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaY 83 (222)
T KOG0087|consen 4 RRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAY 83 (222)
T ss_pred ccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchh
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
++.+.+.++|||++...+|+.+.+|+.+++...+.+++++++|||+||.+.|.+..+++..++...++.+++|||++..|
T Consensus 84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATN 163 (222)
T ss_pred hcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccccc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027703 164 VEAAFEVVIREIYSNIS 180 (220)
Q Consensus 164 v~~l~~~l~~~~~~~~~ 180 (220)
++..|+.++..+.....
T Consensus 164 Ve~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 164 VEKAFERVLTEIYKIVS 180 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888866443
No 5
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-34 Score=206.56 Aligned_cols=167 Identities=44% Similarity=0.750 Sum_probs=158.9
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....+|++++|+.|||||||+-++..+.|.....+|++-.+....+..++..+.+.+|||.|+++++++...|+++|++.
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
|+|||+++.+||..++.|+.++....++++-+.++|||.||...|.+..+++.+++.+.+++|++|||+++.|++++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999999888777777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027703 171 VIREIYS 177 (220)
Q Consensus 171 l~~~~~~ 177 (220)
|.+.+..
T Consensus 162 Ia~~lp~ 168 (200)
T KOG0092|consen 162 IAEKLPC 168 (200)
T ss_pred HHHhccC
Confidence 9988864
No 6
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=201.81 Aligned_cols=199 Identities=34% Similarity=0.611 Sum_probs=171.1
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.+...+||.++|.+|+|||||++++.+..|..++..|++.++.++.+.+++..+.+++|||.|+++|.++-..+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCCC--CCCCCHHHHHHHHHHh-CCeEEEeccCCCC
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLDS--IRDVSTEEGKSLAEEE-GLFFMETSALDST 162 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 162 (220)
.+++||++++.+|+.+..|..++..... +.-|++++|||.|+.. .+.++.+.|.+..... +++|+++||++..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999765443 5579999999999864 3888999998888874 6899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccccccC
Q 027703 163 NVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 220 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~~~~ 220 (220)
|+.+.|+.+.+....+-.. +..+...+.|.+..-... ....+||+|
T Consensus 165 NV~~AFe~ia~~aL~~E~~-----~~~~~~~~~d~i~~~~~~-------~~~~~~c~c 210 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR-----EIAELADYSDQIVLSTKA-------NNQSSGCEC 210 (210)
T ss_pred cHHHHHHHHHHHHHhccch-----hhhhhhhcCccccccccc-------ccCCCCCCC
Confidence 9999999999888763322 445556677777554432 233449998
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-33 Score=200.57 Aligned_cols=165 Identities=40% Similarity=0.699 Sum_probs=156.3
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
.-+|++++|+.+||||||++++..+.|...|.+|+|+++...++.+.+..+++++|||.||++|+.+...|++++.+++.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDT-AVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|||+++..+|+....|+..+...... ..-+++||||.||...++++.+++...+++.+..|+++||+.|.|++++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999998877664 46677899999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 027703 172 IREIYS 177 (220)
Q Consensus 172 ~~~~~~ 177 (220)
...+..
T Consensus 181 aa~l~~ 186 (221)
T KOG0094|consen 181 AAALPG 186 (221)
T ss_pred HHhccC
Confidence 877765
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.2e-32 Score=205.66 Aligned_cols=166 Identities=39% Similarity=0.713 Sum_probs=152.2
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
.+..+||+++|..|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999999888888888777777788888899999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++|||++++.+|+.+..|+.++.... ...|++++|||.|+...+.+..++++.+++..++.|+++||+++.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999987654 46899999999999887888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027703 171 VIREIYS 177 (220)
Q Consensus 171 l~~~~~~ 177 (220)
+.+.+..
T Consensus 162 l~~~i~~ 168 (189)
T cd04121 162 LARIVLM 168 (189)
T ss_pred HHHHHHH
Confidence 9987754
No 9
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=195.18 Aligned_cols=169 Identities=47% Similarity=0.783 Sum_probs=159.2
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
.....++||.++|++|+|||||+-++....|.+..+.|++.++....+.++++.+++-+|||.|+++|+.....|++.|.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
++|+|||++.+.+|..+..|+.++..+.. ++.-.++||||.|-...|.++.+++..+++++++.|+++||++.++++..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 99999999999999999999999987764 45666789999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|+.+...+.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999887764
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.1e-32 Score=207.63 Aligned_cols=164 Identities=38% Similarity=0.765 Sum_probs=149.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
++|+++|.+|||||||++++....|...+.+|++.......+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999999999988877778888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|++++.+|+.+..|+..+........|++++|||+|+...+.+..+++..++.+. ++.|++|||+++.|+.++|+++.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887665667999999999999877888888888888774 789999999999999999999998
Q ss_pred HHHHH
Q 027703 174 EIYSN 178 (220)
Q Consensus 174 ~~~~~ 178 (220)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 77654
No 11
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-32 Score=187.14 Aligned_cols=176 Identities=43% Similarity=0.765 Sum_probs=164.5
Q ss_pred CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703 5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY 84 (220)
Q Consensus 5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 84 (220)
..+++.-++-+|+.|+|.+.+|||||+.+.++..|...+..|++++...+++.-..+.+.+++|||.|+++++.....++
T Consensus 12 ~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayy 91 (193)
T KOG0093|consen 12 DSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYY 91 (193)
T ss_pred ccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHh
Confidence 44566667789999999999999999999999999999999999999988887778889999999999999999999999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
++++++|++||.++.++|..+..|.-.+..+.-.++|++++|||+|+..+|.++-+.++.++.+++..||++||+.+.|+
T Consensus 92 RgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinV 171 (193)
T KOG0093|consen 92 RGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINV 171 (193)
T ss_pred hccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccH
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 027703 165 EAAFEVVIREIYSNIS 180 (220)
Q Consensus 165 ~~l~~~l~~~~~~~~~ 180 (220)
+++|+.+...+.+.+.
T Consensus 172 k~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 172 KQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988876543
No 12
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3e-31 Score=196.29 Aligned_cols=165 Identities=52% Similarity=0.941 Sum_probs=150.4
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
++++||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.+|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999999999999888777777888888899999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|||++++.+|..+..|+..+........|++++|||.|+...+....+++..++...+++++++|++++.|+.++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877655678999999999998777788888999999999999999999999999999999
Q ss_pred HHHHH
Q 027703 172 IREIY 176 (220)
Q Consensus 172 ~~~~~ 176 (220)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T cd01867 161 AKDIK 165 (167)
T ss_pred HHHHH
Confidence 98765
No 13
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.8e-31 Score=196.20 Aligned_cols=163 Identities=50% Similarity=0.875 Sum_probs=148.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999998888888777667777888889999999999999988889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
||++++.+|+.+..|+..+........|++++|||+|+...+.+..+++..++...+++++++||+++.|+.++|+++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876665566899999999999887888889999999999999999999999999999999987
Q ss_pred HHH
Q 027703 174 EIY 176 (220)
Q Consensus 174 ~~~ 176 (220)
.+.
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 664
No 14
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.3e-31 Score=194.95 Aligned_cols=160 Identities=43% Similarity=0.796 Sum_probs=146.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..|.+.+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999999888899887777777888888899999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|++++.+|+.+..|+..+........|++++|||.|+...+.+..+++..+++..+.+|+++||+++.|++++|++|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998876655678999999999998878888899999999999999999999999999999999864
No 15
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.2e-30 Score=192.84 Aligned_cols=164 Identities=53% Similarity=0.905 Sum_probs=148.9
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
+++||+++|++|||||||++++.+..+...+.+|.+.+.....+.+.+..+.+.+||++|+..+...+..+++.++++++
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 36899999999999999999999999988888888877777788888888999999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|||++++.+|..+..|+..+........|+++++||.|+...+.+..+++..++...+++++++|++++.|+.++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999988776555689999999999987777888889999999999999999999999999999998
Q ss_pred HHHH
Q 027703 173 REIY 176 (220)
Q Consensus 173 ~~~~ 176 (220)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8764
No 16
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.8e-30 Score=199.68 Aligned_cols=174 Identities=63% Similarity=1.012 Sum_probs=158.5
Q ss_pred CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703 5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY 84 (220)
Q Consensus 5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 84 (220)
.++.+++++.+||+++|++|||||||++++.+..+...+.+|++.+.....+.+++..+.+.+||++|+.++...+..++
T Consensus 3 ~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 82 (216)
T PLN03110 3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82 (216)
T ss_pred CCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHh
Confidence 35566677899999999999999999999999999888889998888888888888889999999999999988899999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
+.++++++|||++++.+|+.+..|+..+......+.|+++++||+|+...+.+..+++..+....+++++++||+++.|+
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999887766667999999999999877888888999999888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYSN 178 (220)
Q Consensus 165 ~~l~~~l~~~~~~~ 178 (220)
.++|+++.+.+.+.
T Consensus 163 ~~lf~~l~~~i~~~ 176 (216)
T PLN03110 163 EKAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888763
No 17
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.6e-32 Score=186.12 Aligned_cols=167 Identities=51% Similarity=0.859 Sum_probs=158.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
+-.+|.+|+|.+|+|||+|+-++....|..+|..|++.+....++.++|..+.+++||+.|++.|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|||+++.+||....+|++++...++ ..|-++||||.|.+..+.+..++|++++...++.+|+||++...|++..|.-|
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci 164 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI 164 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence 99999999999999999999988776 58889999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027703 172 IREIYSNI 179 (220)
Q Consensus 172 ~~~~~~~~ 179 (220)
.++..+.+
T Consensus 165 t~qvl~~k 172 (198)
T KOG0079|consen 165 TKQVLQAK 172 (198)
T ss_pred HHHHHHHH
Confidence 98887644
No 18
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.8e-30 Score=191.69 Aligned_cols=162 Identities=44% Similarity=0.785 Sum_probs=145.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.+|.+.+.....+..++..+.+.+||++|+.++...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887666666767778899999999999988888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|+++..+++.+..|+..+........|+++++||+|+...+....+++..+....+++++++||+++.|+.++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999998777777888888888888999999999999999999999876
Q ss_pred HH
Q 027703 175 IY 176 (220)
Q Consensus 175 ~~ 176 (220)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 19
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.2e-30 Score=195.37 Aligned_cols=162 Identities=34% Similarity=0.582 Sum_probs=144.1
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
+...+||+++|.+|||||||++++....|+..+.||.+... ...+.+++..+.+.+|||+|++.+...+..+++.++++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45678999999999999999999999999999999987544 45677888899999999999999988888999999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEe
Q 027703 91 LVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-FFMET 156 (220)
Q Consensus 91 i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 156 (220)
++|||++++.+|+.+ ..|+..+.... +..|++++|||.|+.. .+.++.+++..+++..++ .|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78988887655 4689999999999863 346889999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHH
Q 027703 157 SALDSTN-VEAAFEVVIRE 174 (220)
Q Consensus 157 Sa~~~~~-v~~l~~~l~~~ 174 (220)
||+++.| +.++|+.+.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 160 SALQSENSVRDIFHVATLA 178 (182)
T ss_pred CcCCCCCCHHHHHHHHHHH
Confidence 9999998 99999998874
No 20
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3e-31 Score=183.84 Aligned_cols=205 Identities=38% Similarity=0.678 Sum_probs=173.9
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.....+||+++|..|+|||+|+++++.+.||+....|+++++-.+++.+++.++++++|||.|+++|++..+.|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
++++||++..++|+-+.+|+.++..+.+...--++||||.|+...++++...++.+....+..|+++||++-.|++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999998876666688999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC---Cccccccc
Q 027703 170 VVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS---MMDFSCCA 219 (220)
Q Consensus 170 ~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~---~~~~~~~~ 219 (220)
.+.-.+......--..|+..... .++- ..|+-+.-++ ....+||.
T Consensus 163 ~~a~rli~~ar~~d~v~~~~a~a--~~~~---seg~si~l~s~aqt~~~~cc~ 210 (213)
T KOG0095|consen 163 DLACRLISEARQNDLVNNVSAPA--PNSS---SEGKSIKLISYAQTQLLTCCN 210 (213)
T ss_pred HHHHHHHHHHHhccchhhccccC--cccc---CCCCcccchhHHHHHHhcccc
Confidence 88776655333322244443322 2322 4565554444 34477884
No 21
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=2.7e-30 Score=191.37 Aligned_cols=166 Identities=55% Similarity=0.944 Sum_probs=150.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
++++||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|..++......+++.+++++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999999988888888887788888888889999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|||++++.+++.+..|+..+........|+++++||.|+...+....+++..++...++.++++|++++.|+.++|+++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998877655678999999999998667788888989998889999999999999999999999
Q ss_pred HHHHHH
Q 027703 172 IREIYS 177 (220)
Q Consensus 172 ~~~~~~ 177 (220)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 887653
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=2.9e-30 Score=199.20 Aligned_cols=171 Identities=26% Similarity=0.459 Sum_probs=149.4
Q ss_pred CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703 5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY 84 (220)
Q Consensus 5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 84 (220)
+|.++.....+||+++|++|||||||++++....|+..+.+|++... ...+.+++..+.+.+|||+|++.+......++
T Consensus 4 ~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~ 82 (232)
T cd04174 4 RRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCY 82 (232)
T ss_pred cccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHc
Confidence 34455556789999999999999999999999999999999987554 34677888999999999999999988888999
Q ss_pred cCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC
Q 027703 85 RGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL 151 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~ 151 (220)
++++++++|||++++.+|+.+ ..|+.++.... +..|+++||||.|+.. .+.+..+++..+++..++
T Consensus 83 ~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 999999999999999999984 78988887654 3589999999999864 367889999999999998
Q ss_pred -eEEEeccCCCC-CHHHHHHHHHHHHHH
Q 027703 152 -FFMETSALDST-NVEAAFEVVIREIYS 177 (220)
Q Consensus 152 -~~~~~Sa~~~~-~v~~l~~~l~~~~~~ 177 (220)
.|++|||+++. |++++|+.+.....+
T Consensus 162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 162 EVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 69999999997 899999999887754
No 23
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=2.4e-30 Score=190.96 Aligned_cols=163 Identities=68% Similarity=1.076 Sum_probs=148.0
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|+..+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999999998888999888888888888888899999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|||++++.++..+..|+..+........|+++++||.|+...+....++...+....++.++++||+++.|++++++++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988776655689999999999987777888888888888889999999999999999999988
Q ss_pred HHH
Q 027703 173 REI 175 (220)
Q Consensus 173 ~~~ 175 (220)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 653
No 24
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.98 E-value=3e-30 Score=189.75 Aligned_cols=161 Identities=42% Similarity=0.735 Sum_probs=151.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..|+..+.+|.+.+.....+.+++..+.+.+||++|+..+......++++++++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999888888899999999999999999999888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
.+++.+|+.+..|+..+........|++++|||.|+...+.+..+++..++.+.+.+|+++|++++.++.++|..+.+.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998888776789999999999988889999999999999999999999999999999999999876
Q ss_pred H
Q 027703 176 Y 176 (220)
Q Consensus 176 ~ 176 (220)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.98 E-value=2.6e-30 Score=192.20 Aligned_cols=163 Identities=36% Similarity=0.529 Sum_probs=145.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|.+|||||||++++.+..|+..+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999988888876433 34567788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
||++++.+|+.+..|+..+.... ....|++++|||+|+...+.++.+++..++++.+++|+++||+++.|++++|+++.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998887776543 35689999999999987778888899999999999999999999999999999999
Q ss_pred HHHHH
Q 027703 173 REIYS 177 (220)
Q Consensus 173 ~~~~~ 177 (220)
+.+.+
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 87764
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.98 E-value=2.2e-30 Score=192.74 Aligned_cols=159 Identities=33% Similarity=0.588 Sum_probs=141.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+|++++|.+|+|||||+.++....|...+.+|++... ...+.+++..+.+.+|||+|++.+...+..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999999999987554 455777888999999999999999988999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC----------CCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703 95 DITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI----------RDVSTEEGKSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 95 d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
|++++.+|+.+ ..|+..+.... ...|++++|||.|+... +.+..+++..+++..+. .|++|||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 67998887654 46899999999999643 24788899999999888 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREI 175 (220)
Q Consensus 163 ~v~~l~~~l~~~~ 175 (220)
|++++|+.+.+.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999765
No 27
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.8e-31 Score=183.05 Aligned_cols=171 Identities=50% Similarity=0.808 Sum_probs=160.4
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
.+..++.+|+.++|+.|+|||+|++++....|.++...|+++++-...+...++.+++++|||.|+++|++....|++.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
.+.++|||++++.+|+.+..|+........+++-++++|||.||...|++...++..++++..+.++++|+++|+|+++.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999998888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 168 FEVVIREIYSN 178 (220)
Q Consensus 168 ~~~l~~~~~~~ 178 (220)
|-...+.+...
T Consensus 163 Fl~c~~tIl~k 173 (214)
T KOG0086|consen 163 FLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHH
Confidence 88777666543
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=4.1e-30 Score=195.73 Aligned_cols=164 Identities=39% Similarity=0.745 Sum_probs=146.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
+||+++|++|||||||++++.+..+...+.+|++.+.....+.++ +..+.+.+||++|+..+...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999999999998877766777777 7789999999999999988899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAF 168 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~ 168 (220)
||++++.+|+.+..|+..+.... ....|++++|||+|+...+....+++.++++..+ ..++++||+++.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988875432 2568999999999997667788889999999988 689999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 169 EVVIREIYSN 178 (220)
Q Consensus 169 ~~l~~~~~~~ 178 (220)
++|.+.+.+.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 29
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=9.6e-30 Score=193.39 Aligned_cols=166 Identities=49% Similarity=0.807 Sum_probs=149.0
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
.+..+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+.+..+.+.+||++|+..+...+..+++.++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35679999999999999999999999999888889988777777777788888999999999998888889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++|||++++.+|+.+..|+..+.... ...|++++|||+|+...+.+..+++..+....++.++++|++++.|+.++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999998876654 45899999999999876777888888888888999999999999999999999
Q ss_pred HHHHHHH
Q 027703 171 VIREIYS 177 (220)
Q Consensus 171 l~~~~~~ 177 (220)
|.+.+..
T Consensus 162 l~~~~~~ 168 (199)
T cd04110 162 ITELVLR 168 (199)
T ss_pred HHHHHHH
Confidence 9998865
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=5.2e-30 Score=191.76 Aligned_cols=166 Identities=40% Similarity=0.740 Sum_probs=146.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC----------CeEEEEEEEecCCcchhhhhhH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID----------GKEVKAQIWDTAGQERFRAVTS 81 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~----------~~~~~~~~~d~~g~~~~~~~~~ 81 (220)
++.+||+++|++|||||||++++.+..+...+.+|++.+.....+.+. +..+.+.+||++|+..+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999999998888877666556553 3568899999999999988899
Q ss_pred HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC
Q 027703 82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD 160 (220)
Q Consensus 82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (220)
.++++++++++|||++++.+|..+..|+..+.... ..+.|+++++||.|+...+.+..+++..++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999998876543 34689999999999987778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~ 177 (220)
+.|++++|++|.+.+.+
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 162 GTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 31
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=9.2e-30 Score=191.85 Aligned_cols=165 Identities=45% Similarity=0.757 Sum_probs=149.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|...+...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998888889887777777888888899999999999988888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|.+++.+|..+..|+..+........|+++++||.|+...+.+..+++..++...+++++++||+++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998877665568999999999998777788888888888888999999999999999999999999
Q ss_pred HHHHh
Q 027703 175 IYSNI 179 (220)
Q Consensus 175 ~~~~~ 179 (220)
+..+.
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87643
No 32
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.4e-30 Score=191.28 Aligned_cols=158 Identities=32% Similarity=0.575 Sum_probs=140.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..|+..+.+|.+... ...+.+++..+.+.+|||+|+..+......+++.++++++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 7999999999999999999999999999999886554 356778888999999999999988888888999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 95 DITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 95 d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
|++++.+|+.+ ..|+..+.... +..|+++||||.||.. .+.+..+++.++++..++ .|+++||++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999996 78988887665 4689999999999853 245888999999999997 799999999
Q ss_pred CCC-HHHHHHHHHHH
Q 027703 161 STN-VEAAFEVVIRE 174 (220)
Q Consensus 161 ~~~-v~~l~~~l~~~ 174 (220)
+.+ ++++|+.+.+.
T Consensus 160 ~~~~v~~~F~~~~~~ 174 (178)
T cd04131 160 SEKSVRDIFHVATMA 174 (178)
T ss_pred CCcCHHHHHHHHHHH
Confidence 995 99999999874
No 33
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=6.5e-30 Score=188.70 Aligned_cols=162 Identities=32% Similarity=0.619 Sum_probs=145.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+++||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999999999999888777777888888899999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCC-----CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCD-----TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
|.+++.+++.+..|+..+..... .+.|+++++||.|+...+....+++..++.+.+++++++||+++.|+.++++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998876543 4689999999999875567788888888888889999999999999999999
Q ss_pred HHHHHHH
Q 027703 170 VVIREIY 176 (220)
Q Consensus 170 ~l~~~~~ 176 (220)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9987754
No 34
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.8e-30 Score=188.27 Aligned_cols=162 Identities=52% Similarity=0.874 Sum_probs=145.5
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
+++||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57999999999999999999999999988888888777777778888888899999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l 171 (220)
+||++++.+|+.+..|+..+........|+++++||.|+...+....+++..+++..+. .++++|++++.|++++++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998776556789999999999987777788888899988775 68999999999999999999
Q ss_pred HHH
Q 027703 172 IRE 174 (220)
Q Consensus 172 ~~~ 174 (220)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 864
No 35
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=9e-30 Score=187.11 Aligned_cols=160 Identities=52% Similarity=0.863 Sum_probs=146.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999988888887777777888888899999999999988888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|++++.++..+..|+..+........|+++++||.|+...+.+..+++..++...++.++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999988876666678999999999998777788889999999999999999999999999999999864
No 36
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=193.45 Aligned_cols=168 Identities=53% Similarity=0.897 Sum_probs=151.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
.+.+||+++|++|||||||++++.+..+...+.+|++.+...+.+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999999888888888877788888888889999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|||+++..+|..+..|+..+........|+++++||.|+...+....+++..+++..+++++++|++++.|+.++|+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999888766655678999999999998777888899999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027703 172 IREIYSNI 179 (220)
Q Consensus 172 ~~~~~~~~ 179 (220)
.+.+.++.
T Consensus 164 ~~~~~~~~ 171 (210)
T PLN03108 164 AAKIYKKI 171 (210)
T ss_pred HHHHHHHh
Confidence 98876543
No 37
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=1.2e-29 Score=191.69 Aligned_cols=162 Identities=30% Similarity=0.563 Sum_probs=140.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|.+|||||||++++..+.|+..+.+|.+... ...+.+++..+.+.+||++|+..+...+..++++++++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999999999987543 34566788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEeccC
Q 027703 94 YDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEG-LFFMETSAL 159 (220)
Q Consensus 94 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (220)
||++++.+|+.+. .|...+.... ...|++++|||.||...+ .+..+++..+++..+ +.|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 4777666543 468999999999996542 356778899999888 589999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~ 177 (220)
++.|++++|+++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999977643
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.6e-29 Score=194.35 Aligned_cols=163 Identities=34% Similarity=0.547 Sum_probs=146.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
+||+++|++|||||||++++.+..|...+.+|.+.+.....+.+++ ..+.+.+||++|+..+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999998888777777754 578999999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
||++++.+|+.+..|+..+..... ..+|+++++||.|+...+.+..+++..+++..++.++++||+++.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999988776542 34688999999999877888888899999998999999999999999999999
Q ss_pred HHHHHHH
Q 027703 171 VIREIYS 177 (220)
Q Consensus 171 l~~~~~~ 177 (220)
+.+.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9988764
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.4e-29 Score=195.00 Aligned_cols=166 Identities=29% Similarity=0.537 Sum_probs=145.3
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++....+...+.+|.+.......+..++..+.+.+||++|+..+...+..+++.+++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999999999999988777777777777899999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|||.+++.+|+.+..|+..+.... ...|++++|||.|+.. +....++. .+.+...+.|+++||+++.|+.++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999887654 4689999999999864 34444555 6677778899999999999999999999
Q ss_pred HHHHHHHhh
Q 027703 172 IREIYSNIS 180 (220)
Q Consensus 172 ~~~~~~~~~ 180 (220)
.+.+.+..+
T Consensus 168 ~~~~~~~~~ 176 (219)
T PLN03071 168 ARKLAGDPN 176 (219)
T ss_pred HHHHHcCcc
Confidence 988865443
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.7e-29 Score=189.37 Aligned_cols=162 Identities=31% Similarity=0.566 Sum_probs=140.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+|++++|.+|||||||++++.+..|...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999999999988777777888888899999999999998888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC-----CCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-----IRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
|.+++.+|+.+..|+..+........| +++|||+|+.. .+....+++..+++..++.++++||+++.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988765444566 57899999842 111224567778888889999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99987754
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1.6e-29 Score=185.92 Aligned_cols=160 Identities=38% Similarity=0.597 Sum_probs=139.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++....+...+.+|.+ +.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998888887765 334456777888889999999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|++++.+|+.+..|+..+.... ....|+++++||+|+...+.+..+++..+.+..+.+++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988876543 356899999999999766677777788888888899999999999999999999986
Q ss_pred HH
Q 027703 174 EI 175 (220)
Q Consensus 174 ~~ 175 (220)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 53
No 42
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.3e-29 Score=191.95 Aligned_cols=165 Identities=49% Similarity=0.869 Sum_probs=147.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
.+||+++|++|||||||++++.+..+...+.+|++.+.....+.+ ++..+.+.+||++|+..+...+..+++.++++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999999988888887777777766 4667899999999999888888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|||++++.+|..+..|+..+..... ...|+++++||.|+...+.+..+++..+++..++.++++|++++.|+.++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998765543 457788999999998777888889999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027703 172 IREIYSN 178 (220)
Q Consensus 172 ~~~~~~~ 178 (220)
.+.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9887654
No 43
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=180.60 Aligned_cols=168 Identities=46% Similarity=0.821 Sum_probs=152.6
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
.+.+++.++|++-+|||+||+.++.+.|+.-.+||++++.....+.+ +|..+++++|||.|++++++....|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35689999999999999999999999999999999999888777766 67889999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcE-EEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCD-TAVGR-MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~-~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
++|||.+++.+|+.+..|+.+...... +..++ ++||.|+||...|++..+||..++...++.|++||++++.|+++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999998665544 33444 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 027703 169 EVVIREIYSNI 179 (220)
Q Consensus 169 ~~l~~~~~~~~ 179 (220)
+.+.+-+....
T Consensus 166 ~mlaqeIf~~i 176 (213)
T KOG0091|consen 166 DMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHH
Confidence 99998887643
No 44
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.4e-29 Score=188.61 Aligned_cols=164 Identities=51% Similarity=0.807 Sum_probs=145.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
+||+++|++|||||||++++.+..+.. .+.+|.+.......+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 5667776666666677888889999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
||+++..+|+.+..|+..+........|+++++||.|+...+.+..+++..+....+++|+++||+++.|+.++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998887766567899999999999766777888888998888899999999999999999999998
Q ss_pred HHHHH
Q 027703 174 EIYSN 178 (220)
Q Consensus 174 ~~~~~ 178 (220)
.+.+.
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 88754
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=3.6e-29 Score=186.49 Aligned_cols=159 Identities=32% Similarity=0.526 Sum_probs=137.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
++||+++|.+|||||||++++....|+..+.||.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 47999999999999999999999999988989986544 34566778889999999999999888888899999999999
Q ss_pred EeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEeccC
Q 027703 94 YDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG-LFFMETSAL 159 (220)
Q Consensus 94 ~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (220)
||++++.+|+.+.. |+..+.... ...|++++|||.|+... +.+..+++..++++.+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 99999999999974 777776543 46899999999998643 5677888888988876 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIRE 174 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~ 174 (220)
++.|++++|+.+++.
T Consensus 159 tg~~v~~~f~~~~~~ 173 (175)
T cd01874 159 TQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998874
No 46
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=7.5e-29 Score=183.83 Aligned_cols=163 Identities=42% Similarity=0.716 Sum_probs=143.9
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
++..+||+++|++|||||||++++.+..+.+.+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999999988888888777777788888899999999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVE 165 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 165 (220)
++|||++++.+++.+..|...+.... ....|+++++||.|+. .+....+++..++.+.+ .+++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999988765433 2458999999999986 46677888989988887 479999999999999
Q ss_pred HHHHHHHHH
Q 027703 166 AAFEVVIRE 174 (220)
Q Consensus 166 ~l~~~l~~~ 174 (220)
++|+++.+.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 47
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=7.9e-29 Score=183.84 Aligned_cols=163 Identities=38% Similarity=0.630 Sum_probs=142.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
.||+++|++|||||||++++.+..|+..+.+|++.......+.+++..+.+++||++|+.++...+..+++.++++++||
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 38999999999999999999999999999999987777777888888899999999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|++++.++..+..|+..+... ....+|+++|+||.|+...+. ...+++..+..+.+..++++||+++.|+.++|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999887543 344578999999999865433 24566778888888899999999999999999999
Q ss_pred HHHHHH
Q 027703 172 IREIYS 177 (220)
Q Consensus 172 ~~~~~~ 177 (220)
.+.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 988754
No 48
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=7.9e-29 Score=182.36 Aligned_cols=163 Identities=62% Similarity=0.965 Sum_probs=147.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888888777778888888889999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|++++.+++.+..|+..+.......+|+++++||.|+...+....+++..+....+++++++|+.++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988877665679999999999987667778888888888889999999999999999999999987
Q ss_pred HHH
Q 027703 175 IYS 177 (220)
Q Consensus 175 ~~~ 177 (220)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 643
No 49
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=5.5e-29 Score=184.03 Aligned_cols=160 Identities=31% Similarity=0.617 Sum_probs=139.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++....+...+.+|.+.+.....+..++..+.+.+||++|+..+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888899888777777777788899999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|.++..++..+..|+..+..... ..|+++++||+|+.. +... .++..+.....+.++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999877654 699999999999873 3333 34456666778899999999999999999999988
Q ss_pred HHH
Q 027703 175 IYS 177 (220)
Q Consensus 175 ~~~ 177 (220)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 765
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=6.1e-29 Score=183.29 Aligned_cols=160 Identities=36% Similarity=0.594 Sum_probs=140.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|.+|||||||++++....+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988888888776443 356677888889999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|.++..+|+.+..|+..+... ...+.|+++++||.|+...+....+++..+++..+++++++||+++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999999998887654 3467899999999999876667777788888888899999999999999999999987
Q ss_pred HH
Q 027703 174 EI 175 (220)
Q Consensus 174 ~~ 175 (220)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 54
No 51
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=6.9e-29 Score=183.26 Aligned_cols=159 Identities=32% Similarity=0.464 Sum_probs=137.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..|...+.++.+... ...+..+...+.+.+||++|+..+...+..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888777765332 344556667789999999999988888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|+++..+++.+..|+..+.... ..+.|+++++||+|+...+.+..+++..++...++.++++||+++.|+.++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999887765532 2568999999999997767778888888888889999999999999999999999
Q ss_pred HHH
Q 027703 172 IRE 174 (220)
Q Consensus 172 ~~~ 174 (220)
.++
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 754
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.5e-29 Score=187.55 Aligned_cols=161 Identities=39% Similarity=0.588 Sum_probs=141.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|.+|||||||++++.+..|...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999999888888876443 3455677888899999999999988889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
.++..+|+.+..|+..+.... ....|++++|||+|+...+.+...++..++...++.++++||+++.|+.++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876543 24689999999999987777888888888888889999999999999999999999
Q ss_pred HHHHH
Q 027703 173 REIYS 177 (220)
Q Consensus 173 ~~~~~ 177 (220)
+.+.+
T Consensus 160 ~~l~~ 164 (190)
T cd04144 160 RALRQ 164 (190)
T ss_pred HHHHH
Confidence 87764
No 53
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=186.05 Aligned_cols=164 Identities=41% Similarity=0.601 Sum_probs=144.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+++||++|+..+...+..+++.++++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 48999999999999999999999999888888876444 45677888888999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
||++++.+|+.+..|+..+.... ..+.|+++++||.|+...+.+..+++..+....+++++++||+++.|+.++|+++.
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988876543 35789999999999877677777788888888889999999999999999999999
Q ss_pred HHHHHH
Q 027703 173 REIYSN 178 (220)
Q Consensus 173 ~~~~~~ 178 (220)
+.+.+.
T Consensus 164 ~~l~~~ 169 (189)
T PTZ00369 164 REIRKY 169 (189)
T ss_pred HHHHHH
Confidence 877653
No 54
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.1e-28 Score=181.23 Aligned_cols=160 Identities=43% Similarity=0.737 Sum_probs=144.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999999888888888888888888888889999999999998888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|++++.+|+.+..|+..+........|+++++||.|+...+....++...+....++.++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998776655568999999999986667778888888888888999999999999999999999864
No 55
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=6e-30 Score=179.00 Aligned_cols=214 Identities=36% Similarity=0.620 Sum_probs=180.9
Q ss_pred CCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh
Q 027703 4 EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY 83 (220)
Q Consensus 4 ~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~ 83 (220)
.++....+...+|++++|+.-+|||||+=++....|..+...|.--.+....+.+.+....+.+|||.|+++|...-.-|
T Consensus 3 ~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY 82 (218)
T KOG0088|consen 3 LETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY 82 (218)
T ss_pred ccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence 34556778899999999999999999999999999999998888777788888888899999999999999999988999
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
++..++.++|||++++.+|+.+..|..++.......+.+++||||.||...|.+...++.+++..-+..|++|||+++.|
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 99999999999999999999999999999888777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCc-chhhhccccceeeeeecCCCCCCCCCccccccc
Q 027703 164 VEAAFEVVIREIYSNISRKVLNS-DAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 219 (220)
Q Consensus 164 v~~l~~~l~~~~~~~~~~~~~~h-~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~~~ 219 (220)
+.++|+.+.....+..+..-.+. .+..-.+-++|.+-+-|..- .+.+.--.||+
T Consensus 163 i~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~--~a~~sg~~CC~ 217 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEA--EAERSGKRCCR 217 (218)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCc--ccccccCCccC
Confidence 99999999988877554433322 22233445566655444322 34444456886
No 56
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.5e-28 Score=182.33 Aligned_cols=162 Identities=44% Similarity=0.782 Sum_probs=144.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh-hhhHHhhcCCcEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGALV 92 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~ 92 (220)
.+||+++|++|||||||++++....++..+.++.+.+.....+.+.+..+.+.+||++|+..+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999998888888877777788888888999999999988775 467778899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC---CCCHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD---STNVEAAF 168 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~l~ 168 (220)
|||.+++.+|..+..|+..+.... ..+.|+++++||.|+...+.+..+++..++...+++|+++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998877654 35689999999999988788888889899999899999999999 88999999
Q ss_pred HHHHHHH
Q 027703 169 EVVIREI 175 (220)
Q Consensus 169 ~~l~~~~ 175 (220)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 8887654
No 57
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=2.2e-28 Score=179.92 Aligned_cols=162 Identities=51% Similarity=0.841 Sum_probs=145.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
++||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999999887888887777777888888889999999999988888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
+|++++.++..+..|+..+........|+++++||.|+...+....+++..+....++.++++|++++.|+.+++++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766567899999999998866777888888888888899999999999999999999987
Q ss_pred HH
Q 027703 174 EI 175 (220)
Q Consensus 174 ~~ 175 (220)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 64
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=1.8e-28 Score=180.28 Aligned_cols=158 Identities=36% Similarity=0.657 Sum_probs=141.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC--CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID--GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
+||+++|++|+|||||++++.+..+...+.+|.+.+.....+.+. +..+.+.+||++|+..+...+..+++.++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888888877666666666 777899999999999888888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|||.+++.++..+..|+..+.... .+.|+++++||.|+...+.+..+++..++...+++++++|++++.|+++++++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999988876544 4689999999999977677788888899999999999999999999999999987
Q ss_pred H
Q 027703 173 R 173 (220)
Q Consensus 173 ~ 173 (220)
+
T Consensus 160 ~ 160 (162)
T cd04106 160 E 160 (162)
T ss_pred H
Confidence 5
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.4e-28 Score=181.07 Aligned_cols=160 Identities=36% Similarity=0.579 Sum_probs=139.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|.+|||||||++++....+...+.+|.+ ......+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999999888877764 344566777888888999999999999889999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|++++.+|..+..|+..+.... ....|+++++||+|+...+.+...++..+....+++++++||+++.|+.++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988876543 356899999999998766666777778888778889999999999999999999986
Q ss_pred HH
Q 027703 174 EI 175 (220)
Q Consensus 174 ~~ 175 (220)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 43
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.7e-28 Score=180.82 Aligned_cols=161 Identities=43% Similarity=0.641 Sum_probs=139.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.+.. ....+..++..+.+.+||++|+.++...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999999988887776533 3455667778889999999999998888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|++++.+|+.+..|+..+.... ..+.|+++++||.|+...+....+++..++...+.+++++||+++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888765443 346899999999999776677778888888888999999999999999999999987
Q ss_pred HHH
Q 027703 174 EIY 176 (220)
Q Consensus 174 ~~~ 176 (220)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 61
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=1.8e-28 Score=188.21 Aligned_cols=158 Identities=32% Similarity=0.531 Sum_probs=135.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|.+|||||||++++.+..|.. +.+|++.......+ ..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 46666544332222 4578899999999998888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHhC-----
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-------------------IRDVSTEEGKSLAEEEG----- 150 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 150 (220)
|++++.+|..+..|+..+........|++++|||+|+.. .+.+..+++..++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988887665555689999999999865 57888999999998866
Q ss_pred ---------CeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 151 ---------LFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 151 ---------~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
++|+++||+++.|+.++|+.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988765
No 62
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=5e-28 Score=185.59 Aligned_cols=177 Identities=46% Similarity=0.727 Sum_probs=150.8
Q ss_pred CCCCCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh
Q 027703 1 MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT 80 (220)
Q Consensus 1 ~~~~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~ 80 (220)
|+...-.+++....+||+++|++|||||||++++++..+. .+.++.+.+.....+.+++..+.+.+||++|+..+...+
T Consensus 1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 79 (211)
T PLN03118 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT 79 (211)
T ss_pred CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 5666677788888999999999999999999999998774 456677766666777788888899999999999998888
Q ss_pred HHhhcCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703 81 SAYYRGAVGALVVYDITRRSSFDSVKRWL-EELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA 158 (220)
Q Consensus 81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (220)
..+++.++++++|||.+++.+|..+..++ ..+.... ....|+++++||.|+...+.+..+++..++...++.|+++||
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SA 159 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSA 159 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeC
Confidence 99999999999999999999999997644 4444332 245788999999999877777788888888888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027703 159 LDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~ 178 (220)
+++.|++++|++|.+.+.+.
T Consensus 160 k~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999888654
No 63
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-30 Score=181.30 Aligned_cols=180 Identities=39% Similarity=0.698 Sum_probs=160.4
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC---------CeEEEEEEEecCCcchhhhh
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID---------GKEVKAQIWDTAGQERFRAV 79 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~---------~~~~~~~~~d~~g~~~~~~~ 79 (220)
...++.+|+..+|.+|+||||++.+.+...|..+-..|++++...+.+.++ +..+.+++|||.|+++|++.
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 345677899999999999999999999999999999999998888777663 25689999999999999999
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA 158 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (220)
...+++.|-+++++||.++++||-.++.|++.+.... .+++.+++.|||+||+..+.++.+++.+++...++||++|||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 9999999999999999999999999999999987543 366788899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhcCcch
Q 027703 159 LDSTNVEAAFEVVIREIYSNISRKVLNSDA 188 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~ 188 (220)
-++.|+++..+.+..++++.+..-+-...+
T Consensus 164 ~tg~Nv~kave~LldlvM~Rie~~v~~s~~ 193 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKRIEQCVEKSEI 193 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999998866554444333
No 64
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=2.7e-28 Score=179.58 Aligned_cols=161 Identities=38% Similarity=0.581 Sum_probs=139.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|+|||||++++.+..+...+.++.+... .....+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999988877777765333 34556778888999999999999988999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
+|+++..+|+.+..|+..+.... ....|+++++||.|+...+.+..+++..++...+++++++||+++.|+.++|+++.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988876542 35689999999999977666777788888888889999999999999999999998
Q ss_pred HHH
Q 027703 173 REI 175 (220)
Q Consensus 173 ~~~ 175 (220)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 754
No 65
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=2.3e-28 Score=181.95 Aligned_cols=159 Identities=32% Similarity=0.544 Sum_probs=136.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
++|++++|++|||||||++++....|+..+.+|... .....+.+++..+.+.+||++|+..+...+..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 379999999999999999999999999988888753 3344566788889999999999999888888899999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccC
Q 027703 94 YDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSAL 159 (220)
Q Consensus 94 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (220)
||++++.+|+.+. .|+..+.... .+.|++++|||.|+... +.+..+++..++.+.+. .++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999996 4777665543 46899999999998542 34778889999998884 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIRE 174 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~ 174 (220)
++.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998753
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=4.4e-28 Score=177.86 Aligned_cols=159 Identities=38% Similarity=0.616 Sum_probs=137.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999999888888776433 455667777788999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|.++..+|..+..|+..+.... ....|+++++||.|+.. +.....++..+....+++++++||+++.|++++|+++.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999988888876553 35689999999999865 556677788888888999999999999999999999986
Q ss_pred HH
Q 027703 174 EI 175 (220)
Q Consensus 174 ~~ 175 (220)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 43
No 67
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.96 E-value=4.8e-28 Score=185.96 Aligned_cols=161 Identities=29% Similarity=0.498 Sum_probs=138.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+|+|.+|||||||++++....|+..+.||++... ...+.+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999999999999987544 456778889999999999999998888889999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 95 DITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 95 d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
|++++.+|+.+.. |...+... .+..|+++||||.|+... ..++.+++..+++..+. .|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999954 55555443 356899999999998642 13677889999999985 899999999
Q ss_pred CCC-HHHHHHHHHHHHHH
Q 027703 161 STN-VEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~-v~~l~~~l~~~~~~ 177 (220)
+.+ +.++|+.+......
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 885 99999999887654
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=3.2e-28 Score=183.61 Aligned_cols=160 Identities=33% Similarity=0.573 Sum_probs=136.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..|+..+.+|.+... ...+..++..+.+.+||++|+..+...+..+++.++++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 899999999999999999999999988888876554 3456677788899999999999888888888999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEeccCCC
Q 027703 96 ITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEG-LFFMETSALDS 161 (220)
Q Consensus 96 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 161 (220)
++++.+|+.+. .|+..+.... ...|++++|||+|+...+ .+..+++..++...+ +.|+++||+++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999986 4777776543 468999999999987543 345667777877766 68999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIYS 177 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~~ 177 (220)
.|++++|+++.+.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987753
No 69
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=8.4e-28 Score=176.37 Aligned_cols=161 Identities=40% Similarity=0.693 Sum_probs=142.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|+|||||++++.+..+...+.++.+.......+...+..+.+.+||++|+..+...+..++..++++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999988877777766666667777777889999999999888888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|.++..+++.+..|+..+......+.|+++++||+|+...+....++...+....+..++++|++++.|+.++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999888877666578999999999998767777778888888889999999999999999999999875
Q ss_pred H
Q 027703 175 I 175 (220)
Q Consensus 175 ~ 175 (220)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 70
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.5e-27 Score=176.63 Aligned_cols=164 Identities=43% Similarity=0.766 Sum_probs=144.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
.+.+|++++|++|||||||++++.+..+.+.+.++.+.+.....+.+.+..+.+.+||++|+..+...+..++..+++++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998888888888877777777888888889999999999888888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|+|.++..++..+..|+..+........|+++++||.|+...+.+.......+....+..++++|++++.|+.++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999888877666678999999999998777777777777777777899999999999999999999
Q ss_pred HHHH
Q 027703 172 IREI 175 (220)
Q Consensus 172 ~~~~ 175 (220)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8753
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=9.8e-28 Score=176.45 Aligned_cols=159 Identities=35% Similarity=0.603 Sum_probs=136.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+.+.+.++.+.......+.+++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888777766666666777888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
|.+++.+++.+..|+..+.... ...|+++++||.|+... ...+...+....+++++.+||+++.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886543 35899999999998531 2344556666677899999999999999999999987
Q ss_pred HHH
Q 027703 175 IYS 177 (220)
Q Consensus 175 ~~~ 177 (220)
+.+
T Consensus 157 ~~~ 159 (161)
T cd04124 157 AVS 159 (161)
T ss_pred HHh
Confidence 654
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=5.9e-28 Score=176.99 Aligned_cols=153 Identities=20% Similarity=0.330 Sum_probs=129.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++....|++.+.++.+ . ....+.+++..+.+.+||++|+.. ..+++.++++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-R-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-c-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 4899999999999999999998888877655432 2 346678888888999999999864 34668899999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLD--SIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
|.+++.+|+.+..|+..+..... ...|++++|||.|+. ..+.+..+++..++++. ++.|++|||+++.|++++|+.
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999876643 568999999999985 35678888888888776 589999999999999999999
Q ss_pred HHHH
Q 027703 171 VIRE 174 (220)
Q Consensus 171 l~~~ 174 (220)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=8.6e-28 Score=182.14 Aligned_cols=161 Identities=28% Similarity=0.561 Sum_probs=140.4
Q ss_pred ECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCc
Q 027703 20 IGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRR 99 (220)
Q Consensus 20 lG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 99 (220)
+|.+|||||||++++....|...+.+|++.+.....+.+++..+.+.+||++|+..+...+..+++.++++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899998888778888888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 027703 100 SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNI 179 (220)
Q Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 179 (220)
.+|..+..|+.++.... ...|++++|||.|+.. +.+..++ ..++...++.|++|||+++.|+.++|++|.+.+.+..
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 157 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999887654 4689999999999864 4444444 3667778899999999999999999999998887654
Q ss_pred hhhh
Q 027703 180 SRKV 183 (220)
Q Consensus 180 ~~~~ 183 (220)
.+.+
T Consensus 158 ~~~~ 161 (200)
T smart00176 158 NLEF 161 (200)
T ss_pred ccee
Confidence 4433
No 74
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=1.6e-27 Score=176.76 Aligned_cols=164 Identities=40% Similarity=0.721 Sum_probs=143.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..+++++++++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888877777777888888899999999999888888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC----CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC----DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~ 169 (220)
|+++..+++.+..|...+.... ..+.|+++++||.|+...+....++...+....+ +.++++|++++.|++++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 9999999999888887754433 2368999999999997666777888888888876 7899999999999999999
Q ss_pred HHHHHHHHH
Q 027703 170 VVIREIYSN 178 (220)
Q Consensus 170 ~l~~~~~~~ 178 (220)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999887664
No 75
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=1.6e-27 Score=175.10 Aligned_cols=159 Identities=51% Similarity=0.883 Sum_probs=140.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+|++++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988878888877766666777888889999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|.++..+++.+..|+..+.... ....|+++++||+|+. .+....+++..+....+++++++|++++.|++++++++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999988876654 4568999999999987 3566778888999999999999999999999999999876
Q ss_pred H
Q 027703 174 E 174 (220)
Q Consensus 174 ~ 174 (220)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 4
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1e-27 Score=181.82 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=134.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYRG 86 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 86 (220)
+||+|+|.+|||||||++++.+..|+..+.||.+.+.....+.+++..+.+.+|||+|...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999988888887666556677788888999999999643211 12345688
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCC
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-EEGLFFMETSALDST 162 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (220)
+|++++|||++++.+|+.+..|+..+.... ....|+++++||+|+...+....+++..++. ..+++|+++||+++.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999988876543 4568999999999997666666666666654 458899999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|++++|+.+.+....
T Consensus 161 ~v~~lf~~i~~~~~~ 175 (198)
T cd04142 161 HILLLFKELLISATT 175 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987765
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.8e-27 Score=174.25 Aligned_cols=160 Identities=32% Similarity=0.577 Sum_probs=137.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC--cCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~--~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
+||+++|++|||||||++++... .++..+.+|.+.+.....+... +..+.+.+||++|+..+...+..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 6888888888777665556554 56789999999999888888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|||.+++.++..+..|+..+.... ...|+++++||.|+...+.+...++..+....+++++++|++++.|++++++.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999988877654 458999999999997767777777777777778899999999999999999999
Q ss_pred HHHH
Q 027703 172 IREI 175 (220)
Q Consensus 172 ~~~~ 175 (220)
.+..
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8753
No 78
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=8.4e-30 Score=173.49 Aligned_cols=189 Identities=42% Similarity=0.700 Sum_probs=163.4
Q ss_pred EECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC
Q 027703 19 LIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT 97 (220)
Q Consensus 19 ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 97 (220)
++|.+++|||+|+=++....|-. ....|++++...+.+..++.++++++|||.|+++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998887776544 45578888888888989999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 98 RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 98 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+..||+..+.|+.++..+..+...++++|||+|+++++.+..+++..++...+++|+++|+++|-|++..|-.|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999998888778889999999999999999999999999999999999999999999999988877765
Q ss_pred HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccccc
Q 027703 178 NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 219 (220)
Q Consensus 178 ~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~~~ 219 (220)
.+.-+.+. .+++++.+|-+.| .++=.+||+
T Consensus 162 -~~~~~~~~-----~~~~~~~~v~~~~------k~eia~cc~ 191 (192)
T KOG0083|consen 162 -LKMGAPPE-----GEFADHDSVADEG------KGEIARCCR 191 (192)
T ss_pred -hccCCCCC-----CccccchhHHhcC------CCccccccC
Confidence 22222221 3467777665554 566678996
No 79
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=3e-27 Score=177.90 Aligned_cols=161 Identities=31% Similarity=0.530 Sum_probs=136.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
+||+++|++|||||||++++.+..++..+.++.+.... ..+... +..+.+.+||++|+..+...+..+++.++++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999999888888765543 345554 6778999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI----RDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l 167 (220)
||+++..+|+.+.. |+..+.... .+.|++++|||.|+... +.+..+++..++...++ +++++||+++.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999864 776665443 46899999999998643 34667888899998888 8999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|+.+.+.+..
T Consensus 159 f~~l~~~~~~ 168 (187)
T cd04132 159 FDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHh
Confidence 9999988875
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=2.2e-27 Score=185.45 Aligned_cols=161 Identities=27% Similarity=0.448 Sum_probs=138.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|.+|||||||++++.+..|+..+.+|++ +.....+.+++..+.+.+||++|+..+...+..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988888875 444566778888899999999999888777777889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhh---------CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCH
Q 027703 95 DITRRSSFDSVKRWLEELTTH---------CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNV 164 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 164 (220)
|+++..+|+.+..|+..+... ...+.|+++++||.|+...+.+..+++.+++.. ..+.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998887543 224689999999999976677788888777764 3678999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIY 176 (220)
Q Consensus 165 ~~l~~~l~~~~~ 176 (220)
+++|++|.+...
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=1.5e-27 Score=176.01 Aligned_cols=159 Identities=39% Similarity=0.539 Sum_probs=134.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-hhhhhHHhhcCCcEEEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~v~ 94 (220)
||+++|++|||||||++++....+...+.++.... ....+.+++..+.+++||++|+.. +......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999988877777765433 245567788888999999999874 3445667889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC-CCHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS-TNVEAAFEVV 171 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~l~~~l 171 (220)
|++++.+|+.+..|+..+.... ..+.|+++++||+|+...+.+..+++..+++..+.+|+++|++++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988876643 346899999999999776777888888999888999999999999 5999999999
Q ss_pred HHHH
Q 027703 172 IREI 175 (220)
Q Consensus 172 ~~~~ 175 (220)
.+.+
T Consensus 160 ~~~~ 163 (165)
T cd04146 160 CREV 163 (165)
T ss_pred HHHH
Confidence 8754
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.4e-27 Score=179.21 Aligned_cols=158 Identities=29% Similarity=0.456 Sum_probs=127.8
Q ss_pred eEEEEEECCCCCcHHHHHH-HHhhCc-----CCCCCccccee-eeeEEE--------EEeCCeEEEEEEEecCCcchhhh
Q 027703 14 LFKIVLIGDSAVGKSNLLS-RFARNE-----FDSNSKATIGV-EFQTQV--------VDIDGKEVKAQIWDTAGQERFRA 78 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------i~~~~~~~~~~~~d~~g~~~~~~ 78 (220)
.+||+++|.+|||||||+. ++.+.. |...+.||++. +..... +.+++..+.+.+|||+|+.. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665543 45566777742 222111 24678889999999999864 2
Q ss_pred hhHHhhcCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC-------------------CCCCC
Q 027703 79 VTSAYYRGAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS-------------------IRDVS 138 (220)
Q Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~-------------------~~~~~ 138 (220)
....++++++++++|||.+++.+|+.+. .|+..+.... ...|++++|||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 3455789999999999999999999997 4877776654 3689999999999864 36788
Q ss_pred HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 139 TEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
.+++..++++.++.|++|||+++.|++++|+.+.+.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998763
No 83
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=6.6e-27 Score=176.94 Aligned_cols=162 Identities=35% Similarity=0.575 Sum_probs=139.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
+||+++|++|||||||++++.+..+.. .+.+|++.......+.+++..+.+.+||++|+.++...+..++..++++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999998875 5777777666666788888889999999999988888888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC----CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI----RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
||+++..+|+.+..|+..+.... ...|+++++||.|+... +.+..+++..++...++.++++|++++.|+.++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988988876543 36899999999998532 34455677788888889999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
++.+.+.+
T Consensus 160 ~i~~~~~~ 167 (193)
T cd04118 160 KVAEDFVS 167 (193)
T ss_pred HHHHHHHH
Confidence 99988864
No 84
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=6e-27 Score=173.39 Aligned_cols=161 Identities=38% Similarity=0.561 Sum_probs=140.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3799999999999999999999999988888877643 346667788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCCHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-LFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l 171 (220)
||.+++.+++.+..|...+.... ....|+++++||.|+...+....+++.++++..+ ++++++||+.+.|+.++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999998888776533 3568999999999997777777888888888877 789999999999999999999
Q ss_pred HHHH
Q 027703 172 IREI 175 (220)
Q Consensus 172 ~~~~ 175 (220)
...+
T Consensus 160 ~~~~ 163 (168)
T cd04177 160 VRQI 163 (168)
T ss_pred HHHH
Confidence 8654
No 85
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=7.1e-27 Score=170.40 Aligned_cols=158 Identities=56% Similarity=0.936 Sum_probs=142.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.+|.+.+.....+...+..+.+.+||++|+..+...+..++++++++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999999988888888887778888888889999999999988888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|++++.++..+..|+..+........|+++++||.|+........++...+....+.+++++|++++.++.+++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999888777656789999999999865567788888889888899999999999999999999886
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3e-27 Score=175.21 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=136.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
.+.+|++++|.+|||||||++++.+..|. ..+.+|.+.+.....+.+++..+.+.+||++|+..+...+..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 36799999999999999999999999998 88888888776666777888888899999999988888888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFE 169 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~ 169 (220)
++|+|.+++.+++.+..|+..+.. ....|+++++||.|+...+.....+...+....++ .++++||+++.|+.++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 999999999999998888876532 23689999999999865444444455566666666 468899999999999999
Q ss_pred HHHHHHH
Q 027703 170 VVIREIY 176 (220)
Q Consensus 170 ~l~~~~~ 176 (220)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9987754
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=6.2e-27 Score=180.52 Aligned_cols=160 Identities=32% Similarity=0.418 Sum_probs=135.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc-CCcEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR-GAVGALV 92 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-~~~~~i~ 92 (220)
+||+++|++|||||||++++.+..+. ..+.++.+.+.....+.+++..+.+.+||++|+. ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888876 6676766545556677788888899999999987 223344556 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|||+++..+|+.+..|+..+.... ....|+++++||.|+...+.+..+++..++...++.++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988876653 3568999999999998777788888888888888999999999999999999999
Q ss_pred HHHHH
Q 027703 172 IREIY 176 (220)
Q Consensus 172 ~~~~~ 176 (220)
.+.+.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 98885
No 88
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-27 Score=162.46 Aligned_cols=172 Identities=51% Similarity=0.847 Sum_probs=159.1
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
+-+..+++|+.|+|.-|+|||+|++.+....|...-+.|+++++-...+...++++++++||+.|+++|+.....+++.+
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
.+.++|+|.+.+..+..+..|+...+...+++..++++|||.||...+.+..+++.+++.+.++.|+++|+++|+|+++.
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 99999999999999999999999887777777888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHh
Q 027703 168 FEVVIREIYSNI 179 (220)
Q Consensus 168 ~~~l~~~~~~~~ 179 (220)
|-...+.+.++.
T Consensus 165 fle~akkiyqni 176 (215)
T KOG0097|consen 165 FLETAKKIYQNI 176 (215)
T ss_pred HHHHHHHHHHhh
Confidence 877777766543
No 89
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=5.7e-27 Score=174.31 Aligned_cols=158 Identities=34% Similarity=0.594 Sum_probs=135.2
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI 96 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 96 (220)
|+|+|++|||||||++++.+..++..+.++..... ...+.+++..+.+.+||++|+..+...+..+++.++++++|||.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999888887765433 45667788888999999999998888888899999999999999
Q ss_pred CCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703 97 TRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 97 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
+++.+|+.+. .|+..+.... ...|++++|||.|+... +.+..+++..+++..+. .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 4777776654 46899999999998642 23677788889999886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIY 176 (220)
Q Consensus 163 ~v~~l~~~l~~~~~ 176 (220)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987753
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=8.7e-27 Score=173.34 Aligned_cols=157 Identities=33% Similarity=0.543 Sum_probs=134.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+|++++|++|+|||||++++.+..|...+.+|.. +.....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999988888763 344556777888899999999999988888888899999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
|.+++.+|+.+. .|+..+.... ...|+++++||.|+.. .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 5777766432 3589999999999853 356677889999998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIR 173 (220)
Q Consensus 161 ~~~v~~l~~~l~~ 173 (220)
+.|++++|+.+..
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=4.1e-26 Score=169.69 Aligned_cols=159 Identities=32% Similarity=0.507 Sum_probs=133.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|+|||||++++.+..+...+.++... .....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999998887777643 33445667888888999999999988888888899999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
|.+++.+|+.+. .|...+... ....|+++++||.|+... +.+..+++..+++..+. .++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 466666554 456899999999998542 25667788888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREI 175 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~ 175 (220)
+.|++++|+.+.+.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988653
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=8.7e-26 Score=166.04 Aligned_cols=161 Identities=39% Similarity=0.604 Sum_probs=138.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++....+...+.++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999998887777765433 455667778899999999999988888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|.+++.++..+..|+..+.... ....|+++++||.|+...+.....+...+..+.+++++++|++++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999888866543 356899999999998764556777778888888899999999999999999999987
Q ss_pred HHH
Q 027703 174 EIY 176 (220)
Q Consensus 174 ~~~ 176 (220)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 664
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=5.6e-26 Score=166.32 Aligned_cols=158 Identities=41% Similarity=0.654 Sum_probs=138.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..+...+.++.. ......+.+++..+.+.+||++|...+...+..++..++++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999888888777765 4455666777777899999999998888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
.++..++..+..|+..+..... ...|+++++||+|+...+....+++..+....+.+++++|++++.|+.+++++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888766544 578999999999987767778888989998888999999999999999999999864
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=1.1e-25 Score=167.61 Aligned_cols=159 Identities=33% Similarity=0.562 Sum_probs=131.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
.||+++|++|||||||++++.+..++..+.+|.+... ...+.+++..+.+.+||++|+..+...+...+.+++++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6899999999999999999999999988888876443 356777888889999999999888877777889999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 95 DITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 95 d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
|+++..+|+.+.. |...+.... .+.|+++++||.|+... ..+...++..++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999988854 666665543 46899999999998532 23445677788877664 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREI 175 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~ 175 (220)
+.|++++|++|.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998653
No 95
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.8e-25 Score=171.94 Aligned_cols=172 Identities=28% Similarity=0.514 Sum_probs=144.5
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
..+...+|++++|++|||||||++++....+...+.+|.+.+.....+..++..+.+.+||++|+..+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34455699999999999999999988888898899999988887777777888899999999999888888888899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
++++|||.++..+|..+..|+..+.... ++.|+++++||.|+.. +....+ ...+....++.++++|++++.++++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988876553 4689999999999854 333333 335666778899999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 027703 169 EVVIREIYSNISRKV 183 (220)
Q Consensus 169 ~~l~~~~~~~~~~~~ 183 (220)
.+|.+.+..+..+++
T Consensus 161 ~~ia~~l~~~p~~~~ 175 (215)
T PTZ00132 161 LWLARRLTNDPNLVF 175 (215)
T ss_pred HHHHHHHhhccccee
Confidence 999998876555544
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1.5e-25 Score=168.76 Aligned_cols=160 Identities=36% Similarity=0.583 Sum_probs=131.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+|++++|++|+|||||++++....+++.+.++..... ...+.+++..+.+.+||++|+..+.......+..+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 6999999999999999999998888877776654333 345667777888999999998877666666778999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC----------CCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703 95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS----------IRDVSTEEGKSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
++++..+|+.+. .|+..+..... +.|++++|||.|+.. .+.+..+++..+++..+. .|+++||+++.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 47777765443 599999999999853 244556778888888885 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIY 176 (220)
Q Consensus 163 ~v~~l~~~l~~~~~ 176 (220)
|++++|+++.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999997664
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=3e-25 Score=166.02 Aligned_cols=162 Identities=40% Similarity=0.596 Sum_probs=138.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
.||+++|++|||||||++++.+..+...+.++..... ...+..++..+.+.+||++|+..+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988877777664333 455667777788999999999988888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
|.++..+++.+..|+..+.... ....|+++++||+|+...+....++...+....+.+++++|++++.++.++++++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999888865543 356799999999998766666777777888888889999999999999999999998
Q ss_pred HHHH
Q 027703 174 EIYS 177 (220)
Q Consensus 174 ~~~~ 177 (220)
.+..
T Consensus 161 ~~~~ 164 (180)
T cd04137 161 EIEK 164 (180)
T ss_pred HHHH
Confidence 7764
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=7.3e-26 Score=167.62 Aligned_cols=153 Identities=21% Similarity=0.358 Sum_probs=121.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++....+.. +.+|.+.... .+.. ..+.+.+||++|+..+...+..++..++++++|
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999998877753 5566665443 2323 457899999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 167 (220)
+|++++.++..+..|+..+... ..+..|+++++||+|+.. ....+++...... ..+.++++||+++.|+.++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 9999999999988887775432 234589999999999864 3455665554421 2346889999999999999
Q ss_pred HHHHHH
Q 027703 168 FEVVIR 173 (220)
Q Consensus 168 ~~~l~~ 173 (220)
|+||.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999864
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.94 E-value=7.7e-26 Score=167.66 Aligned_cols=156 Identities=22% Similarity=0.372 Sum_probs=125.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..+.. +.+|.+.... .+.+ ..+.+.+||++|+..+...+..+++.++++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987764 5666654442 3333 45788999999998888888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC------CeEEEeccCCCCCHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG------LFFMETSALDSTNVEAAF 168 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 168 (220)
.+++.++..+..|+..+.... ....|+++++||+|+.. ....+++..++...+ +.++++||+++.|+.++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888865432 34579999999999864 456666666654222 367789999999999999
Q ss_pred HHHHHHHHHH
Q 027703 169 EVVIREIYSN 178 (220)
Q Consensus 169 ~~l~~~~~~~ 178 (220)
+||.+.+.++
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9999877654
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=1.3e-26 Score=170.97 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=124.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.|+++|++|||||||++++.+..+...+.+|.+... ..++...+.+.+||++|+..+...+..+++.++++++|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 479999999999999999999988888888877542 2344456889999999999998899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH----HHHHHHHHHhCCeEEEeccCC------CCCHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST----EEGKSLAEEEGLFFMETSALD------STNVE 165 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~ 165 (220)
.++..++.....|+..+.... ...|+++++||.|+...+.... .++..++++.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888775443 4689999999999876543221 123455556678888877777 99999
Q ss_pred HHHHHHHH
Q 027703 166 AAFEVVIR 173 (220)
Q Consensus 166 ~l~~~l~~ 173 (220)
++|+.+..
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998764
No 101
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=168.90 Aligned_cols=164 Identities=41% Similarity=0.575 Sum_probs=150.6
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+|++++|.+|+|||+|..++....|...+.||+. +.+...+.+++..+.+.++||+|+..+......+....+++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999987 5556788888999999999999998888899999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
||++++..||+.+..++..+.+. .....|++++|||+|+...+.+..+++.+++...++.|+++||+...+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999999888443 33568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027703 172 IREIYS 177 (220)
Q Consensus 172 ~~~~~~ 177 (220)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 987765
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=1.8e-25 Score=167.43 Aligned_cols=157 Identities=20% Similarity=0.335 Sum_probs=121.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++....+. .+.||.+.... .+.. ..+.+.+||++|+..+...+..++++++++++|
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999887776 45677665433 2333 457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-----CCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-----GLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l 167 (220)
+|+++..++..+..++..+... ...+.|+++++||+|+... ...++....+.-. .+.++++||++++|+.++
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 9999999999887777665332 2246899999999998753 3444433333211 124567999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|+||.+.+..
T Consensus 170 ~~~l~~~~~~ 179 (181)
T PLN00223 170 LDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHhh
Confidence 9999877654
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.94 E-value=1.9e-25 Score=163.92 Aligned_cols=152 Identities=20% Similarity=0.366 Sum_probs=117.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|.+|||||||++++....+. .+.||.+.... .+.. ..+.+.+||++|+..+...+..++++++++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999887776 46677665432 3333 3578999999999988888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
|.++..++..+.+++..+... ...+.|+++++||+|+.... ..++...... +..+.++++||+++.|+.++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999998877775432 23468999999999986432 2333222221 223457789999999999999
Q ss_pred HHHHH
Q 027703 169 EVVIR 173 (220)
Q Consensus 169 ~~l~~ 173 (220)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=4.3e-25 Score=163.58 Aligned_cols=157 Identities=38% Similarity=0.620 Sum_probs=129.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+...+.++.. ......+..++..+.+.+||++|+..+......+++.++++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998777776664 333445666788889999999999877777777889999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCCC-----------CCCHHHHHHHHHHhCC-eEEEeccCCC
Q 027703 95 DITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSIR-----------DVSTEEGKSLAEEEGL-FFMETSALDS 161 (220)
Q Consensus 95 d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (220)
|.+++.+|..... |+..+.... .+.|+++++||+|+.... .+..+++..+....+. .++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999888654 555555543 369999999999986544 2356778888888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIR 173 (220)
Q Consensus 162 ~~v~~l~~~l~~ 173 (220)
.|+++++++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=5.2e-25 Score=167.26 Aligned_cols=160 Identities=29% Similarity=0.440 Sum_probs=132.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..+...+.++.. ......+.+.+..+.+.+||++|+..+...+..++..++++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998887776664 3445567777878899999999998888778888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCC-CCCCCHHHHHHHHH-HhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDS-IRDVSTEEGKSLAE-EEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
.+++.+++.+..|+..+..... ...|+++++||.|+.. .+.+..+++..... ..+..++++|++++.|+.++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999988887665543 5689999999999864 34455555544443 4467899999999999999999999
Q ss_pred HHHH
Q 027703 173 REIY 176 (220)
Q Consensus 173 ~~~~ 176 (220)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8664
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=4.6e-25 Score=165.38 Aligned_cols=157 Identities=22% Similarity=0.362 Sum_probs=120.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++....+.. +.+|.+.... .+.+ ..+.+.+||++|+..+...+..+++.++++++|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999998877764 5567664432 3333 447899999999999888999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 167 (220)
+|++++.++.....++..+... ...+.|+++++||+|+.. ....++....... ..+.++++||+++.|+.++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 9999999999988777765322 234689999999999864 2233332222211 1235678999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|++|.+.+..
T Consensus 170 ~~~l~~~i~~ 179 (182)
T PTZ00133 170 LDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.94 E-value=5.1e-25 Score=164.13 Aligned_cols=155 Identities=21% Similarity=0.352 Sum_probs=120.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++....+. .+.+|.+.... .+.+ ..+.+.+||++|+..+...+..+++.++++++|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 489999999999999999999877764 35667665443 2333 347899999999999988999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 167 (220)
+|.+++.+++...+|+..+... .....|+++++||+|+... ...++...... ...+.++++||+++.|+.++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 9999999999998888876433 2246899999999998653 23333322221 12335667999999999999
Q ss_pred HHHHHHHH
Q 027703 168 FEVVIREI 175 (220)
Q Consensus 168 ~~~l~~~~ 175 (220)
|+||.+.+
T Consensus 166 ~~~l~~~~ 173 (175)
T smart00177 166 LTWLSNNL 173 (175)
T ss_pred HHHHHHHh
Confidence 99998764
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=3.7e-25 Score=164.57 Aligned_cols=159 Identities=23% Similarity=0.359 Sum_probs=123.7
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
...++..+||+++|++|||||||++++.+..+. .+.+|.+.. ...+.++ .+.+.+||++|+..+...+..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 8 QKLKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred hhcCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 344455689999999999999999999988553 445565533 2334444 37889999999998888888999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCC
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDS 161 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 161 (220)
+++++|+|+++..++.....|+..+... ...+.|+++++||+|+... ...++...... ...++++++||+++
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 83 DALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 9999999999999999888887775432 2356899999999998653 24555555442 34568999999999
Q ss_pred CCHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIR 173 (220)
Q Consensus 162 ~~v~~l~~~l~~ 173 (220)
.|+.++|+++.+
T Consensus 161 ~gi~~l~~~l~~ 172 (173)
T cd04154 161 EGLLQGIDWLVD 172 (173)
T ss_pred cCHHHHHHHHhc
Confidence 999999999863
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=1.2e-24 Score=163.19 Aligned_cols=160 Identities=25% Similarity=0.390 Sum_probs=125.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEe-CCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDI-DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
+||+++|++|||||||++++....+... .+|.+.......+.. ++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 7999999999999999999999887654 566655554444443 34568899999999998888899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH--H----hCCeEEEeccCCCCCHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE--E----EGLFFMETSALDSTNVEA 166 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~~ 166 (220)
+|+++..++..+..|+..+.... ....|+++++||.|+.. ....++...+.. + ..++++++||+++.|+++
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999888988888877765432 34689999999999864 334444444432 1 124678899999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=1.2e-24 Score=164.88 Aligned_cols=149 Identities=21% Similarity=0.376 Sum_probs=123.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-----CeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-----GKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
+||+++|.+|||||||++++.+..|...+.+|++.......+.+. +..+.+.+||++|+..+...+..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999999999998876666666653 467899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhh-------------------CCCCCcEEEEEecCCCCCCCCCCHHH----HHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTH-------------------CDTAVGRMLVGNKCDLDSIRDVSTEE----GKSLA 146 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~v~~k~Dl~~~~~~~~~~----~~~~~ 146 (220)
+++|||++++.+|+.+..|+.++... ...+.|++++|||.|+...+.+...+ +..++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999987643 12468999999999997666555553 44556
Q ss_pred HHhCCeEEEeccCCCCC
Q 027703 147 EEEGLFFMETSALDSTN 163 (220)
Q Consensus 147 ~~~~~~~~~~Sa~~~~~ 163 (220)
.+.+++.+..++.++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 66788777766665443
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=3.4e-24 Score=158.32 Aligned_cols=158 Identities=30% Similarity=0.373 Sum_probs=120.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
.||+++|.+|||||||++++.+..++..++.+.. .......+++..+.+.+||++|...+...+..++..++++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 3899999999999999999999998766544322 22334455667789999999999877666777789999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHh-C-CeEEEeccCCCCCHHHHHH
Q 027703 95 DITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEEE-G-LFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 95 d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~v~~l~~ 169 (220)
|.+++.+++.+. .|+..+.... ...|+++++||+|+...+... .++...+.... . ..++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999986 4666666544 368999999999987544321 22333333333 2 3789999999999999999
Q ss_pred HHHHHH
Q 027703 170 VVIREI 175 (220)
Q Consensus 170 ~l~~~~ 175 (220)
.+.+.+
T Consensus 158 ~~~~~~ 163 (166)
T cd01893 158 YAQKAV 163 (166)
T ss_pred HHHHHh
Confidence 888765
No 112
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.9e-27 Score=176.01 Aligned_cols=177 Identities=20% Similarity=0.299 Sum_probs=120.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh------hHHhhcCC--
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV------TSAYYRGA-- 87 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~------~~~~~~~~-- 87 (220)
.++|+||+||||||||++|.+.+.+ ..|.+.++|..+.... +.. ..+.. ..+++.+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~-~~~---~~R~~vGmVFQ~fnLFPHlTv 94 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK-DIL---KLRRKVGMVFQQFNLFPHLTV 94 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh-hHH---HHHHhcCeecccccccccchH
Confidence 4899999999999999999999655 4566667664432111 110 00000 00111111
Q ss_pred -----cEEEEEEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 88 -----VGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 88 -----~~~i~v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
.+-+.+.-....+..+...+++..+ ....+..+..++.|.|+. +..||+++-+|++.+|| |||
T Consensus 95 leNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQR--------VAIARALaM~P~vmLFDEPTSA 166 (240)
T COG1126 95 LENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQR--------VAIARALAMDPKVMLFDEPTSA 166 (240)
T ss_pred HHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHH--------HHHHHHHcCCCCEEeecCCccc
Confidence 1112222233333344444444442 222222233344444444 45577999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+||+-+.++++.+.++..++.|++++||++.+|...||||++|++|++++.|+|+++
T Consensus 167 LDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999998875
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=1.9e-24 Score=158.74 Aligned_cols=152 Identities=20% Similarity=0.331 Sum_probs=116.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc-CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE-FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+|+++|++|||||||++++.+.. +...+.+|.+..... +. ...+.+.+||++|...+...+..+++.++++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999976 355566776643322 22 24578899999999998889999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 166 (220)
|+++..++..+..|+..+.... ....|+++++||+|+.... ..++...... ...+.++++||+++.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888877764421 2468999999999986532 2333222221 1234688999999999999
Q ss_pred HHHHHHH
Q 027703 167 AFEVVIR 173 (220)
Q Consensus 167 l~~~l~~ 173 (220)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.92 E-value=2.7e-24 Score=159.06 Aligned_cols=151 Identities=21% Similarity=0.316 Sum_probs=119.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
+|+++|++|||||||++++.+. +...+.+|.+... ..+.+. .+.+.+||++|+..+...+..+++.++++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999987 7777778876543 344443 4788999999999888899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHH------HHHHHH--hCCeEEEeccCCC-----
Q 027703 96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEG------KSLAEE--EGLFFMETSALDS----- 161 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~------~~~~~~--~~~~~~~~Sa~~~----- 161 (220)
+++..++..+..|+..+.... ....|+++++||+|+...+ ...+. ..++.+ .++.++.+||+++
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 999999999988888876543 2468999999999987644 22221 122211 2346777999998
Q ss_pred -CCHHHHHHHHHH
Q 027703 162 -TNVEAAFEVVIR 173 (220)
Q Consensus 162 -~~v~~l~~~l~~ 173 (220)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.92 E-value=7.9e-24 Score=159.66 Aligned_cols=154 Identities=22% Similarity=0.300 Sum_probs=123.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+|++++|++|||||||++++.+..+. .+.+|.+. ..+.+.+.+ +.+.+||++|+..+...+..+++.++++++|
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999988764 45555543 345555654 6788999999988888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH----------------hCCeEEEe
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE----------------EGLFFMET 156 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 156 (220)
+|.++..++.....++..+.... ..+.|+++++||+|+.. ....++.+..... ..+.++++
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 99999988988888877765432 24589999999999864 5566676666543 22468889
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027703 157 SALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~ 174 (220)
||++++|+.++|+||.+.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 999999999999999875
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=8.9e-24 Score=157.36 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=125.5
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
.+..+||+++|+.||||||++++|....+.. ..||.+... ..+.+.+ +.+.+||++|+..+...|..++..++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3667999999999999999999999875443 456655543 3444544 6788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------hCCeEEEeccCCCCC
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE------EGLFFMETSALDSTN 163 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~ 163 (220)
+||+|.++...+.+..+.+..+... .....|+++++||+|+.. ....++......- .++.++.+|+.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999999888877775543 235689999999999875 4456665554432 344578899999999
Q ss_pred HHHHHHHHHHH
Q 027703 164 VEAAFEVVIRE 174 (220)
Q Consensus 164 v~~l~~~l~~~ 174 (220)
+.+.++||.+.
T Consensus 164 v~e~l~WL~~~ 174 (175)
T PF00025_consen 164 VDEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.92 E-value=9.5e-24 Score=157.16 Aligned_cols=153 Identities=21% Similarity=0.351 Sum_probs=118.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+.. +.+|.+... ..+.++ .+.+.+||++|+..+...+..+++.++++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999888765 455655433 333343 47899999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+|++++.++.....++..+... .....|+++++||+|+.. ....++..... .+.++.++++||+++.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 9999998888887776665432 224589999999999864 23444422222 233457899999999999999
Q ss_pred HHHHHH
Q 027703 168 FEVVIR 173 (220)
Q Consensus 168 ~~~l~~ 173 (220)
+++|.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=1.4e-23 Score=153.89 Aligned_cols=152 Identities=24% Similarity=0.424 Sum_probs=116.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..+... .+|.+... ..+... ..+.+.+||++|+..+...+..++..++++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999987643 45555432 333333 45789999999998888888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH------HhCCeEEEeccCCCCCHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE------EEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
+++..++.....|+..+.... ..+.|+++++||+|+... ...++...... ..+++++++||+++.|+.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999888998888877754432 256899999999998642 23344332221 123468899999999999999
Q ss_pred HHHHH
Q 027703 169 EVVIR 173 (220)
Q Consensus 169 ~~l~~ 173 (220)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 119
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=159.48 Aligned_cols=163 Identities=35% Similarity=0.578 Sum_probs=146.3
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
.-+|++|+|..++|||+|+-.+..+.|+..+.||+. +.+...+.++ ++.+.+.+|||.|++++...+...+.++|.++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999996 7777888895 99999999999999998887777889999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEec
Q 027703 92 VVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG-LFFMETS 157 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (220)
+||++.++++|+.+. .|+.++...+ +..|++++|+|.||+.. ..+..+++++++++.+ ..|+++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999975 5989998887 46999999999999732 3577888999999998 5799999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027703 158 ALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~ 177 (220)
|++..|++++|+...+....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999988765
No 120
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=2.1e-23 Score=146.98 Aligned_cols=163 Identities=22% Similarity=0.357 Sum_probs=130.0
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
...++..++|.|+|++||||||+++++.+.. ++...||.++...+ +.+ +.+++++||++|+...+..|.+||...
T Consensus 10 ~k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt--l~~--~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 10 QKLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT--LEY--KGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE--EEe--cceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 3456679999999999999999999999886 44555676654433 334 447899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHH------HHHHHHHhCCeEEEeccCC
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEE------GKSLAEEEGLFFMETSALD 160 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~ 160 (220)
|++++|+|++++-.++.....+..+.... -.-.|+++++||+|+.. .+..++ ...+++...++++.+|+.+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence 99999999999988888777666643322 23368899999999874 333333 3445566788999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~ 177 (220)
|++..+-++|++..+..
T Consensus 163 ge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 163 GEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999998876
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=3.1e-23 Score=153.15 Aligned_cols=152 Identities=25% Similarity=0.427 Sum_probs=116.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcC------CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEF------DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~------~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
+|+++|++|||||||+++|.+... ...+.+|.+... ..+.++ ...+.+||++|+..+...+..++..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999987533 223334444333 344454 3688999999999888888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-------hCCeEEEeccCCC
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-------EGLFFMETSALDS 161 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 161 (220)
+++|+|+++..++.....++..+.... ....|+++++||+|+.. ....++...+... .+++++++||+++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888877755432 34689999999999865 3344554444433 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIR 173 (220)
Q Consensus 162 ~~v~~l~~~l~~ 173 (220)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=4.3e-23 Score=164.02 Aligned_cols=144 Identities=24% Similarity=0.499 Sum_probs=122.1
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-------------CeEEEEEEEecCCcc
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-------------GKEVKAQIWDTAGQE 74 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-------------~~~~~~~~~d~~g~~ 74 (220)
...+...+||+++|.+|||||||++++.+..|...+.+|++.......+.++ ++.+.+++||++|+.
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 4556667999999999999999999999999998889998877766666654 256889999999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC------------CCCcEEEEEecCCCCCCC---C---
Q 027703 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD------------TAVGRMLVGNKCDLDSIR---D--- 136 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~v~~k~Dl~~~~---~--- 136 (220)
.+...+..++++++++|+|||++++.+|..+..|+..+..... .+.|+++||||+||...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999876421 358999999999996542 2
Q ss_pred CCHHHHHHHHHHhCC
Q 027703 137 VSTEEGKSLAEEEGL 151 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (220)
...++++.++...++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 257889999988775
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=3.6e-23 Score=151.57 Aligned_cols=151 Identities=23% Similarity=0.346 Sum_probs=113.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++....+.. +.+|.+... ..+.+ ..+.+.+||++|+..+...+..++..++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998877653 445554433 23333 34788999999999888889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHh-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTT-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
.+++.++....+++..+.. ....+.|+++++||+|+.... ...+....... .+.+++++||+++.|++++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888776666655432 223468999999999986432 23332222211 124689999999999999999
Q ss_pred HHHH
Q 027703 170 VVIR 173 (220)
Q Consensus 170 ~l~~ 173 (220)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=6.8e-23 Score=153.89 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=119.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..++|+++|++|||||||++++.+..+.. +.+|.+. ....+.+. .+.+.+||++|+..+...+..++..++++++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 34899999999999999999999886643 3344332 23334443 3788899999999888889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------hCCeEEEeccC
Q 027703 93 VYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE------------EGLFFMETSAL 159 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 159 (220)
|+|++++.++.....++..+... .....|+++++||+|+.. ..+.++.+..+.- ....++.+|++
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 99999998898888777775433 224689999999999864 4566665544421 23357889999
Q ss_pred CCCCHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIRE 174 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~ 174 (220)
++.|++++++||.+.
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999754
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=4.7e-23 Score=150.83 Aligned_cols=151 Identities=23% Similarity=0.385 Sum_probs=118.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
||+++|++|||||||++++.+..+ ..+.++.+.... .+.+. .+.+.+||++|+..+...+..++..++++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999973 344555554332 33333 4688999999999888888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++..++.....++..+.... ....|+++++||+|+.... ..++...... ...++++++|++++.|+.++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877754432 3568999999999986533 3444333332 2346799999999999999999
Q ss_pred HHHH
Q 027703 170 VVIR 173 (220)
Q Consensus 170 ~l~~ 173 (220)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9874
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=1.5e-22 Score=147.52 Aligned_cols=152 Identities=26% Similarity=0.441 Sum_probs=119.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.|+++|++|||||||+++|.+..+...+.++.+.... .+...+ +.+.+||++|+..+...+..++..++++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999999999888888775543 233333 789999999999888888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++..++.....++..+... .....|+++++||.|+.... ...+..... ....+.++++|++++.|+.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99988888877777765432 22467999999999986532 222222222 12235789999999999999999
Q ss_pred HHHH
Q 027703 170 VVIR 173 (220)
Q Consensus 170 ~l~~ 173 (220)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 127
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-24 Score=155.51 Aligned_cols=170 Identities=31% Similarity=0.535 Sum_probs=157.1
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
-+..+|++|+|..++||||+|++++.+.|...+..|+++++....+.+++..+...+||+.|+..+......|+++|.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 35579999999999999999999999999999999999999988888888888999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++||+-+|..||+...+|+.++..... .+|.+++-||+||....+..-+++..+++.....++.+|.+...|+..+|.+
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 999999999999999999999887665 5999999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 027703 171 VIREIYSNISR 181 (220)
Q Consensus 171 l~~~~~~~~~~ 181 (220)
|++...+.++.
T Consensus 176 LaeK~~q~~kq 186 (246)
T KOG4252|consen 176 LAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHH
Confidence 99988765443
No 128
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=6.5e-22 Score=147.25 Aligned_cols=141 Identities=39% Similarity=0.683 Sum_probs=125.8
Q ss_pred CcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC
Q 027703 37 NEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC 116 (220)
Q Consensus 37 ~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~ 116 (220)
..|++.+.+|++.+.....+.+++..+.+.+|||+|+..+...+..+++.++++++|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45788889999888877778888889999999999999999899999999999999999999999999999999876655
Q ss_pred CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 117 DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 117 ~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
..+.|++++|||+|+...+.+..+++..++...+..++++||+++.|+.++|++|.+.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999997667788888888888888999999999999999999999988754
No 129
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=150.15 Aligned_cols=169 Identities=38% Similarity=0.557 Sum_probs=137.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.+|.+...........+..+.+.+||++|+..+...+..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 39999999999999999999999999999999987666666665555578899999999999999999999999999999
Q ss_pred EeCCC-cccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHh---CCeEEEec
Q 027703 94 YDITR-RSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEE---GLFFMETS 157 (220)
Q Consensus 94 ~d~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 157 (220)
+|.++ ..+++....|...+........|+++++||.|+...+ .............+ ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 4456666778888877765668999999999997653 33333333333333 33488899
Q ss_pred cC--CCCCHHHHHHHHHHHHHHHhhhh
Q 027703 158 AL--DSTNVEAAFEVVIREIYSNISRK 182 (220)
Q Consensus 158 a~--~~~~v~~l~~~l~~~~~~~~~~~ 182 (220)
+. .+.++.+++..+.+.+.+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 99 99999999999999997644433
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=1.6e-21 Score=141.72 Aligned_cols=158 Identities=35% Similarity=0.520 Sum_probs=124.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
++||+++|.+|||||||++++.+..++..+.++.+.......+..++..+.+.+||++|+..+...+..+..+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999998878777877777666677777668899999999988888888888899999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 94 YDITRR-SSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 94 ~d~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|.... .++.... .|...+........|+++++||.|+.... ........+.......++++|+.++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998776 6666654 45555544443368999999999986533 23333334444445679999999999999999986
Q ss_pred H
Q 027703 172 I 172 (220)
Q Consensus 172 ~ 172 (220)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=3.8e-22 Score=147.63 Aligned_cols=157 Identities=21% Similarity=0.148 Sum_probs=110.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----hhhhhHH---hhcCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----FRAVTSA---YYRGAV 88 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----~~~~~~~---~~~~~~ 88 (220)
.|+++|++|||||||+++|.+........+..+..+..+.+.+.+. ..+.+|||||+.. ....... .+..++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999986543222222233444444544432 4788999999632 1112222 334699
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCH
Q 027703 89 GALVVYDITRR-SSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNV 164 (220)
Q Consensus 89 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v 164 (220)
++++|+|+++. .+++.+..|...+..... ...|+++++||.|+...... .+....+... ...+++.+|++++.++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888887765432 35788999999998653332 2333344444 3678999999999999
Q ss_pred HHHHHHHHHH
Q 027703 165 EAAFEVVIRE 174 (220)
Q Consensus 165 ~~l~~~l~~~ 174 (220)
.++++++.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=8.8e-22 Score=145.45 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=106.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh---------hhhHHhhcC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------AVTSAYYRG 86 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~ 86 (220)
+|+++|++|||||||+++|.+..+.....+..+.....+.+.. ..+.+.+|||||+.... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999998775432222222233333333 34788999999973210 011111233
Q ss_pred CcEEEEEEeCCCcccH--HHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 87 AVGALVVYDITRRSSF--DSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
++++++|+|+++..++ .....|+..+.... ...|+++++||.|+...+.. .+...+......+++++||+++.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCCH
Confidence 6889999999886553 55556777665433 36899999999998654332 2244555556778999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 165 EAAFEVVIREI 175 (220)
Q Consensus 165 ~~l~~~l~~~~ 175 (220)
+++++++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 133
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.89 E-value=2.7e-24 Score=166.00 Aligned_cols=176 Identities=22% Similarity=0.268 Sum_probs=115.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--hhhhhhHHhhcCCcEEEEEE
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--RFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--~~~~~~~~~~~~~~~~i~v~ 94 (220)
++|+||||||||||+++|.+. ..+..|.+.++|+.+. +.+... +......+.. ....-+.|+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~----~~~~kelAk~ia~vpQ~~-~~~~~~tV~ 94 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIA----SLSPKELAKKLAYVPQSP-SAPFGLTVY 94 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchh----hcCHHHHhhhEEEeccCC-CCCCCcEEe
Confidence 789999999999999999998 4445677777775432 111100 0000000000 011112222
Q ss_pred eCC--------------CcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703 95 DIT--------------RRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T 156 (220)
Q Consensus 95 d~~--------------~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (220)
|.- .....+.+...+..+ ..........++.|.++. .-.|+++++++++.++| |
T Consensus 95 d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr--------v~iArALaQ~~~iLLLDEPT 166 (258)
T COG1120 95 ELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR--------VLIARALAQETPILLLDEPT 166 (258)
T ss_pred ehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH--------HHHHHHHhcCCCEEEeCCCc
Confidence 221 111111222222221 222223333333444433 33477999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|.+|..+.-++++.+.++..+ +.+++++.||++.|.+|||++++|++|+++.+|+|+++.
T Consensus 167 s~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999966 899999999999999999999999999999999998864
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=4e-22 Score=152.07 Aligned_cols=158 Identities=17% Similarity=0.102 Sum_probs=114.6
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--hh------hHH
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--AV------TSA 82 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--~~------~~~ 82 (220)
+++.++|+|+|++|||||||++++.+..+.....+..+.++....+.+.+. ..+.+||++|..... .. ...
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 466789999999999999999999998755443333334444555555443 368889999973210 00 112
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST 162 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (220)
.+..+|++++|+|++++.++.....|...+........|+++++||.|+....... ........+++.+|++++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999998888887777666655444568999999999986433211 3344556789999999999
Q ss_pred CHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIRE 174 (220)
Q Consensus 163 ~v~~l~~~l~~~ 174 (220)
|+.+++++|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.89 E-value=7.5e-22 Score=146.56 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=114.8
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....++++++|++|||||||+++|.+..+.. ..++.+... ..+.+.+ ..+.+||++|+..+...+..+++.++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 3447999999999999999999999986643 344444322 3444444 5788999999988877888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC-----CeEEEeccCCCCCH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG-----LFFMETSALDSTNV 164 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v 164 (220)
++|+|+++..++.....++..+... .....|+++++||.|+.... ..++......-.. ..++++||+++.|+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi 163 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGL 163 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence 9999999988888877776665432 23468999999999975422 2232222221111 24678999999999
Q ss_pred HHHHHHHHH
Q 027703 165 EAAFEVVIR 173 (220)
Q Consensus 165 ~~l~~~l~~ 173 (220)
+++++||.+
T Consensus 164 ~~~~~~l~~ 172 (173)
T cd04155 164 QEGMNWVCK 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999975
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.8e-21 Score=157.87 Aligned_cols=163 Identities=18% Similarity=0.106 Sum_probs=122.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~ 86 (220)
...|+++|.||||||||+++|++........+..+..+..+.+.+.+ ...+.+||+||... ....+..++..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 35699999999999999999998764433334445666667666632 24678999999642 12233345567
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
++++++|+|+++..+++.+..|..++..+.. ...|+++++||+|+........++...+....+.+++.+||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 8999999999988789999889888876543 35799999999998754433333444445556688999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYS 177 (220)
Q Consensus 165 ~~l~~~l~~~~~~ 177 (220)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 137
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.9e-24 Score=167.08 Aligned_cols=177 Identities=19% Similarity=0.215 Sum_probs=129.0
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC--cchhh-------------hhhH
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG--QERFR-------------AVTS 81 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g--~~~~~-------------~~~~ 81 (220)
++|+|-+|||||||++++... +++..+.+.+++.++. .+.. ...++ .-+.
T Consensus 57 fViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~----~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 57 FVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIA----KLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchh----cCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 679999999999999999998 5556778878775431 1110 00000 0112
Q ss_pred HhhcCCcEEEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 82 AYYRGAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
..+.++..-+-+--+...+..+...+|++. +..+..+.+.-++.|.++. +.-|++++.++++.++| .|
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQR--------VGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQR--------VGLARALANDPDILLMDEAFS 193 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHH--------HHHHHHHccCCCEEEecCchh
Confidence 223333322333344445566667777776 3344344444455555555 45566999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|+||--..++-+.++++..+ ++|++|+|||+++|.++.|||++|+||+|+..|+|+||.
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999987 899999999999999999999999999999999999875
No 138
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.4e-24 Score=165.86 Aligned_cols=176 Identities=18% Similarity=0.254 Sum_probs=119.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCc--chhhhhhHHhhcCCc------
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ--ERFRAVTSAYYRGAV------ 88 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~--~~~~~~~~~~~~~~~------ 88 (220)
++|+|.+|+|||||++++.+.+-| ..|.+.++|.++. ...+. ...+...-..+++.+
T Consensus 35 ~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~----~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 35 FGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLT----ALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred EEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecc----cCChHHHHHHHhhccEEeccccccccch
Confidence 799999999999999999999655 4566767774432 12211 011110000111111
Q ss_pred -----EEEE-EEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 89 -----GALV-VYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 89 -----~~i~-v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
++-+ +-.....+...+..++++.+ .......+.-++.|.|+.+ ..||+++.+|++.+.| |||
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV--------aIARALa~~P~iLL~DEaTSA 171 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV--------AIARALANNPKILLCDEATSA 171 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH--------HHHHHHhcCCCEEEecCcccc
Confidence 0000 11111222333344444432 2222233444666666664 4566999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 159 LDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+||...+.+++.|.++..+ +.|++++||.++.++.+|||++||.+|++++.|+..++
T Consensus 172 LDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 172 LDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred CChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999988 99999999999999999999999999999999998775
No 139
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-22 Score=144.18 Aligned_cols=158 Identities=21% Similarity=0.346 Sum_probs=129.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..++|+++|-.+|||||+++.+...++... .||++.......+ +++++.+||..|+.+.+..|..|+++.+++||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 358999999999999999999988887766 8888876665444 36899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEA 166 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 166 (220)
|.|++|++.+...++.+..+....+ ...|+++.+||+|++.+. +..+..+...- .++.+-.++|.+|.|+.+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 9999999999998877666554443 678999999999998744 44444343333 344666699999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
.++|+.+.+..
T Consensus 169 gl~wl~~~~~~ 179 (181)
T KOG0070|consen 169 GLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHhc
Confidence 99999987754
No 140
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=8.1e-21 Score=141.75 Aligned_cols=154 Identities=23% Similarity=0.305 Sum_probs=109.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc-------CCCCCccc------ceeeeeEEE--EEe---CCeEEEEEEEecCCcchhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE-------FDSNSKAT------IGVEFQTQV--VDI---DGKEVKAQIWDTAGQERFR 77 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~-------~~~~~~~t------~~~~~~~~~--i~~---~~~~~~~~~~d~~g~~~~~ 77 (220)
+|+++|.+|+|||||++++.+.. +...+.++ .+....... +.+ ++..+.+.+|||+|+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998742 11111111 112222222 222 5667889999999999988
Q ss_pred hhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---eEE
Q 027703 78 AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL---FFM 154 (220)
Q Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 154 (220)
..+..+++.+|++++|+|.++..++.....|.... ....|+++++||.|+...+ ..+....+....++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88888999999999999999877776665554322 2357899999999985422 22223344454454 488
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
++||+++.|++++++++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998653
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=3.2e-21 Score=141.67 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=103.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC---cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN---EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~---~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
-|+++|++|||||||+++|.+. .++....++.+.......+.+.+ ...+.+|||||+..+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999864 34433334444444444455542 3578899999998876666667889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHH---hCCeEEEeccCCCCCHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEE---EGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l 167 (220)
|+|+++....+. ...+..+... ...|+++++||.|+..... ....+....... ...+++++|++++.|++++
T Consensus 81 V~d~~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 81 VVAADEGIMPQT-REHLEILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEECCCCccHhH-HHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 999976321111 1222222221 1248899999999864321 112333344444 3578999999999999999
Q ss_pred HHHHHH
Q 027703 168 FEVVIR 173 (220)
Q Consensus 168 ~~~l~~ 173 (220)
++.+.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998764
No 142
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.87 E-value=2.2e-22 Score=152.48 Aligned_cols=177 Identities=18% Similarity=0.181 Sum_probs=118.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--hh-hhhhH--HhhcCCcE--
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--RF-RAVTS--AYYRGAVG-- 89 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--~~-~~~~~--~~~~~~~~-- 89 (220)
++++||+||||||++++|... +++..+.+.++++.+. +.+... +. ....+ ..+.+..+
T Consensus 30 ~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~----~~d~~~LRr~IGYviQqigLFPh~Tv~e 94 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDIS----DLDPVELRRKIGYVIQQIGLFPHLTVAE 94 (309)
T ss_pred EEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecc----cCCHHHHHHhhhhhhhhcccCCCccHHH
Confidence 689999999999999999999 5567788888886542 111100 00 00000 01111110
Q ss_pred -EEEEEeC--CC-cccHHHHHHHHHHHH----hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703 90 -ALVVYDI--TR-RSSFDSVKRWLEELT----THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL 159 (220)
Q Consensus 90 -~i~v~d~--~~-~~~~~~~~~~~~~l~----~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~ 159 (220)
+.+|-.. .+ ...-..+.+++..+. .+....+ ..|+...++.+..+++++.+|++.++| .||+
T Consensus 95 NIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP--------~eLSGGQQQRVGv~RALAadP~ilLMDEPFgAL 166 (309)
T COG1125 95 NIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALAADPPILLMDEPFGAL 166 (309)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc--------hhcCcchhhHHHHHHHHhcCCCeEeecCCcccc
Confidence 1111111 11 112222333332221 1112222 234444455566788999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 160 DSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|+.+..++-+.+.++..+ ++|++|+|||+++|..+||||.+|++|+++..++|+++.
T Consensus 167 DpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred ChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999987 999999999999999999999999999999999998864
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=6.3e-21 Score=137.17 Aligned_cols=134 Identities=25% Similarity=0.250 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc-----hhhhhhHHhhcCCcEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-----RFRAVTSAYYRGAVGA 90 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~~~~ 90 (220)
||+++|++|||||||++++.+..+. +.+|. .+.+.. .+||++|.. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~-------~~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ-------AVEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccce-------eEEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999988652 22222 122222 579999973 122222 347899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFE 169 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~ 169 (220)
++|+|++++.++... .|...+ ..|+++++||.|+.. +....+++..+++..+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 999999999887652 333221 238899999999864 34456667777777665 789999999999999999
Q ss_pred HHH
Q 027703 170 VVI 172 (220)
Q Consensus 170 ~l~ 172 (220)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 144
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.86 E-value=1e-22 Score=153.63 Aligned_cols=176 Identities=18% Similarity=0.237 Sum_probs=122.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-------------eEEEEEEEecCCcchhhhhhHH
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-------------KEVKAQIWDTAGQERFRAVTSA 82 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-------------~~~~~~~~d~~g~~~~~~~~~~ 82 (220)
.++|+|++|||||||.+.|.|..-+..+ .+.++| +.+++.|-|--+..........
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G-----------~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~ 103 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSG-----------SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR 103 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCc-----------eEEECCcccCccccchhhccceeEEecCCccccCcchhHHH
Confidence 5899999999999999999999655444 444433 3456666666554322222222
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHh---hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTT---HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
.+..+-.. -.-....+.+.+++..+.. .....+.-++.|.++.++ .++++..+|++.++| +|
T Consensus 104 ~l~Epl~~-----~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia--------IARAL~~~PklLIlDEptS 170 (252)
T COG1124 104 ILSEPLRP-----HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA--------IARALIPEPKLLILDEPTS 170 (252)
T ss_pred HHhhhhcc-----CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH--------HHHHhccCCCEEEecCchh
Confidence 22222111 1111222334445444211 111222335555555543 466999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
++|.....++++.+.++..+ +.+.+|+|||+..+..+|||++||++|++++.+..+++
T Consensus 171 aLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred hhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 99999999999999999887 89999999999999999999999999999999998775
No 145
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.5e-22 Score=157.19 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=116.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe-------------EEEEEEEecCCcchhhhhhHHh
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-------------EVKAQIWDTAGQERFRAVTSAY 83 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-------------~~~~~~~d~~g~~~~~~~~~~~ 83 (220)
++++|||||||||||+.|.|.+.++. +.|.+++. ++-+.|-+..-.+ ......+.
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe~p~~-----------G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~-HmtVa~NI 98 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLETPDA-----------GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP-HMTVADNI 98 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCcCCCCC-----------ceEEECCEeccchhccchhhcceeEEEechhhcc-cchHHhhh
Confidence 89999999999999999999976654 44444443 2333333333111 11111111
Q ss_pred hcCCcEEEEEE--eCCCcccHHHHHHHHHHHHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 84 YRGAVGALVVY--DITRRSSFDSVKRWLEELTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 84 ~~~~~~~i~v~--d~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
... +-+- ..+....-..+.+++..+.. .....+.-++.|.++ .+.-|++++-+|++.++| .+
T Consensus 99 AFG----l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ--------RVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 99 AFG----LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ--------RVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hhc----ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH--------HHHHHHHhhcCCCeEeecCCch
Confidence 111 1111 01111223333344333221 111222223333333 344577999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
++|..-..++-.|+.+.... +.+.+++|||++++.+.||||++|++|+|...|+++|+
T Consensus 167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 99999999999999999988 99999999999999999999999999999999999886
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.86 E-value=6.6e-20 Score=131.92 Aligned_cols=153 Identities=48% Similarity=0.781 Sum_probs=119.4
Q ss_pred EECCCCCcHHHHHHHHhhCcC-CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC
Q 027703 19 LIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT 97 (220)
Q Consensus 19 ilG~~g~GKSTll~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 97 (220)
++|++|+|||||++++.+... +....++. .+.........+....+.+||++|..............++++++|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999877 45555555 5555666666666788999999998877777778889999999999999
Q ss_pred CcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 98 RRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEE-GKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 98 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
++.++.....|+.. .........|+++++||.|+.......... ..........+++.+|+.++.++.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 98888888776322 333344568999999999986544333322 4455556678999999999999999999875
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=2.8e-20 Score=152.08 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=112.1
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhH
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTS 81 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~ 81 (220)
+...++|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+. ..+.+|||+|... +... .
T Consensus 186 ~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-l 263 (351)
T TIGR03156 186 RADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-L 263 (351)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-H
Confidence 345689999999999999999999998754444444445556667777432 4788999999721 1111 2
Q ss_pred HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703 82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS 161 (220)
Q Consensus 82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (220)
..+.++|.+++|+|++++.++..+..|...+......+.|+++++||+|+.... +.... .....+++.+||+++
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCC
Confidence 246789999999999998888777666555555444468999999999986422 11111 122345788999999
Q ss_pred CCHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIRE 174 (220)
Q Consensus 162 ~~v~~l~~~l~~~ 174 (220)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998754
No 148
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=2.9e-21 Score=133.80 Aligned_cols=157 Identities=23% Similarity=0.415 Sum_probs=127.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+.+.++|..+||||||.+.+..+.+...-.||.+.+... ++...+.+.+||.+|++.++..|..|++..++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4789999999999999999999988888888888876654 555778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHH-----HHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEE-----GKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+|+.+++.+...+..+..+..... ..+|.+++|||.|++.+ ++..+ ...-+++..+.+|.+|+++..|++.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 999999888887776666554432 56899999999998753 23222 12223334557888999999999999
Q ss_pred HHHHHHHHH
Q 027703 168 FEVVIREIY 176 (220)
Q Consensus 168 ~~~l~~~~~ 176 (220)
.+||.+.-.
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999987653
No 149
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.85 E-value=5.8e-20 Score=148.94 Aligned_cols=160 Identities=20% Similarity=0.136 Sum_probs=115.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~ 86 (220)
...|+++|.++||||||+++|.+........+..+..+..+.+.+++ ...+.+||+||... ....+...+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 36799999999999999999998764333333334555666666654 35778999999742 12222334456
Q ss_pred CcEEEEEEeCCCc---ccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703 87 AVGALVVYDITRR---SSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS 161 (220)
Q Consensus 87 ~~~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (220)
++++++|+|+++. ..++.+..|..++..+.. ...|+++++||+|+..... ..+....+....+..++.+||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999876 577788778777765532 3579999999999865322 222344455555778999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREI 175 (220)
Q Consensus 162 ~~v~~l~~~l~~~~ 175 (220)
.+++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 150
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=6.3e-20 Score=135.40 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=107.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
.|+++|++|||||||+++|.+..+.....++.+.......+... +....+.+|||+|+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999988776544444333333333333 13467889999999888777888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHH-HHHHHH------HhCCeEEEeccCCCCCHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEE-GKSLAE------EEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~-~~~~~~------~~~~~~~~~Sa~~~~~v~~l 167 (220)
|+++....... ..+..+.. ...|+++++||+|+.......... ...+.. ...++++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99875432222 22222322 357899999999986422111111 111111 12357899999999999999
Q ss_pred HHHHHHHHH
Q 027703 168 FEVVIREIY 176 (220)
Q Consensus 168 ~~~l~~~~~ 176 (220)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987654
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=1.9e-20 Score=139.20 Aligned_cols=155 Identities=25% Similarity=0.218 Sum_probs=107.3
Q ss_pred EECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh----hh---hhHHhhcCCcEEE
Q 027703 19 LIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF----RA---VTSAYYRGAVGAL 91 (220)
Q Consensus 19 ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~----~~---~~~~~~~~~~~~i 91 (220)
++|++|||||||+++|.+..+.....+..+..+..+.+.+.+ ...+.+||+||.... .. .....++.+++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999875222222223444445555551 356789999996321 11 2234567899999
Q ss_pred EEEeCCCc------ccHHHHHHHHHHHHhhCC-------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703 92 VVYDITRR------SSFDSVKRWLEELTTHCD-------TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA 158 (220)
Q Consensus 92 ~v~d~~~~------~~~~~~~~~~~~l~~~~~-------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (220)
+|+|+.+. .++.....|...+..... ...|+++++||.|+.....................++.+|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999887 467777777776654332 36899999999998654433332223344445678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027703 159 LDSTNVEAAFEVVIRE 174 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~ 174 (220)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988764
No 152
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=8.6e-23 Score=164.27 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=117.0
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE----------EEEEEecCCcchhhhhhHHhhcC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV----------KAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~----------~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
++++||+||||||+|++|.|.+.+ +.+.+.++|+.+ .+.|-+..-.+. .....+.
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH-ltV~~NV--- 98 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH-MTVEENV--- 98 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChhhcccceeecCcccCCC-CcHHHHh---
Confidence 789999999999999999999655 456666666543 222222221111 1111111
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST 162 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~ 162 (220)
+-++-........+.-..+.++++.+ .......+.-++.|.++. +.-|++++.+|++.++| .|++|..
T Consensus 99 afGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR--------VALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 99 AFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR--------VALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred hhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH--------HHHHHHhhcCcchhhhcCcccchhHH
Confidence 00100000011111222333333321 222222232334444443 44577999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccc
Q 027703 163 NVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC 217 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~ 217 (220)
-..++..++.++..+ +.|.+++|||..+|..++|||+||++|+|...|+|+++-.
T Consensus 171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999987 8999999999999999999999999999999999998743
No 153
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.3e-22 Score=153.13 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=120.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEE---------EEEEecCC---cchhhhhhHHh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK---------AQIWDTAG---QERFRAVTSAY 83 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~---------~~~~d~~g---~~~~~~~~~~~ 83 (220)
-++++||||+|||||+|.|+|.. .++.+.+.+.+..+. .-+--|.+ ..+......+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~-----------~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv 100 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFY-----------KPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENV 100 (250)
T ss_pred EEEEECCCCCCceeeeeeecccc-----------cCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHH
Confidence 47999999999999999999994 445566666664321 00111111 11111111221
Q ss_pred hcCCc---EEEEEEe--C---CCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q 027703 84 YRGAV---GALVVYD--I---TRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME 155 (220)
Q Consensus 84 ~~~~~---~~i~v~d--~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (220)
.-.+. .+...+. . ...+..+....|++.+......+.+. -+|+...+...|.|++++.+|++.++|
T Consensus 101 ~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A------~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 101 AVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA------GNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred HHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh------hcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 11111 0111111 1 11223333444444432211111111 334555566778899999999999999
Q ss_pred --eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccc
Q 027703 156 --TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC 217 (220)
Q Consensus 156 --~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~ 217 (220)
.+++++....++.+.|.++..+ +.++++++||+..++.+||||+||..|+++.+|+|+++..
T Consensus 175 EPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 175 EPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999988885 6999999999999999999999999999999999998753
No 154
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.1e-22 Score=154.20 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=117.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--EEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--QIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.++++|+||||||||++.+.+...+.. +.+.+++..... .++.. ....-..+++++..++.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~-----------G~v~~~g~~~~~~~~~~~~------~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTS-----------GEVLVDGLDTSSEKSLLEL------RQKVGLVFQNPDDQLFG 94 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCC-----------CEEEECCeeccchhhHHHh------hcceEEEEECccccccc
Confidence 589999999999999999999966644 444444432110 00000 00000111122211110
Q ss_pred --------EeC-CCcccHHHH----HHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703 94 --------YDI-TRRSSFDSV----KRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T 156 (220)
Q Consensus 94 --------~d~-~~~~~~~~~----~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (220)
|-. +...+.+++ .+.+.. +......++.-++.|.|+.++.+. .++.+|++.++| |
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~--------vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG--------VLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhH--------HHHcCCCEEEEcCCC
Confidence 000 111122222 222222 222333445556778887766544 999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|.+|+.+..++++.+.++..+ +.+++++|||++.+..+|||+++|++|+++.+|+++++.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 999999999999999999988 699999999999999999999999999999999987754
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.85 E-value=8.9e-21 Score=144.28 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=100.1
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCc-----------chhhhhh
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ-----------ERFRAVT 80 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~-----------~~~~~~~ 80 (220)
...++|+++|++|||||||+++|.+..+.....++.+... ..+... .+.+|||+|. ..+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3458999999999999999999999887665555544332 223222 5789999993 3444444
Q ss_pred HHhhc----CCcEEEEEEeCCCcccH-HH---------HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 027703 81 SAYYR----GAVGALVVYDITRRSSF-DS---------VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA 146 (220)
Q Consensus 81 ~~~~~----~~~~~i~v~d~~~~~~~-~~---------~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~ 146 (220)
..++. .++++++|+|.++.... .. -.+++..+. ....|+++++||+|+.... .+.+..+.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 44443 34677788887543221 00 011122222 2358999999999986433 23344455
Q ss_pred HHhCC---------eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 147 EEEGL---------FFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 147 ~~~~~---------~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
...++ +++.+||+++ |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 54444 4789999999 999999999887654
No 156
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=7.3e-20 Score=133.64 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=108.7
Q ss_pred EECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh------hhHHhh--cCCcEE
Q 027703 19 LIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA------VTSAYY--RGAVGA 90 (220)
Q Consensus 19 ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~~~~~ 90 (220)
++|.+|+|||||++++.+..+.....++.+.......+.+++ ..+.+|||||+..+.. ....++ ..++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999875555555555555566666665 4788999999865443 234445 489999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++|+|.++..... .++..+.. ...|+++++||.|+.....+... ...+....+++++++|+.++.|+.+++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998754322 33333332 25799999999998754433332 34666667889999999999999999999
Q ss_pred HHHHH
Q 027703 171 VIREI 175 (220)
Q Consensus 171 l~~~~ 175 (220)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98764
No 157
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.5e-22 Score=150.75 Aligned_cols=164 Identities=19% Similarity=0.192 Sum_probs=115.6
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-------EEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-------VKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-------~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
++|+||+|||||||+|.|.|..-+. .+.+.+++.. +-+.|- .....-|.....+...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~-----------~G~V~~~g~~v~~p~~~~~~vFQ-----~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPT-----------SGEVLLDGRPVTGPGPDIGYVFQ-----EDALLPWLTVLDNVAL 95 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC-----------CceEEECCcccCCCCCCEEEEec-----cCcccchhhHHhhhee
Confidence 7999999999999999999996554 4444444432 222221 1112224444444433
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVE 165 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~ 165 (220)
.+-.......+....+.+++..+. ...+..+.-++.|.|+.++. |++++.+|++.++| .||+|.....
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVai--------ARAL~~~P~lLLlDEPFgALDalTR~ 167 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAI--------ARALATRPKLLLLDEPFGALDALTRE 167 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHH--------HHHHhcCCCEEEEcCCcchhhHHHHH
Confidence 222222333444555666666532 23334455567777777554 55999999999999 9999999999
Q ss_pred HHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecC
Q 027703 166 AAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDG 204 (220)
Q Consensus 166 ~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G 204 (220)
.+-+++.++..+ +.|++++|||+++|..++|||++|.++
T Consensus 168 ~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999976 899999999999999999999999995
No 158
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=9.6e-22 Score=151.18 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=123.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE-----EEEEEecCCcchhhh-----hhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV-----KAQIWDTAGQERFRA-----VTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~-----~~~~~d~~g~~~~~~-----~~~~~~~ 85 (220)
-++|+||||+|||||++.++|..-| ..+.+.+.+..+ ...+--.|++..+.. ...-..-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~ 100 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLL 100 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHc
Confidence 3799999999999999999998444 445555444321 112233444321111 1111111
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCC
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDS 161 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~ 161 (220)
..-.-.-+|..-+....+.+.+.++. +....+.++.-++.|.++.+ -.|+++++++++.++| +++.|.
T Consensus 101 g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV--------~lARAL~~~p~lllLDEP~~gvD~ 172 (254)
T COG1121 101 GRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV--------LLARALAQNPDLLLLDEPFTGVDV 172 (254)
T ss_pred cCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH--------HHHHHhccCCCEEEecCCcccCCH
Confidence 11111112222223335556666655 34444555555566655554 3466999999999999 999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccccc
Q 027703 162 TNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSC 217 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~~ 217 (220)
.+..+++++|.++..+++++++++||++.+..++|+++.|+. ++++.|+++++.-
T Consensus 173 ~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~ 227 (254)
T COG1121 173 AGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLT 227 (254)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccC
Confidence 999999999999998899999999999999999999999874 6999999988654
No 159
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=6.3e-22 Score=148.33 Aligned_cols=177 Identities=16% Similarity=0.224 Sum_probs=125.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE---------EEEecCC-c--chhhhhhHHhh
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---------QIWDTAG-Q--ERFRAVTSAYY 84 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~---------~~~d~~g-~--~~~~~~~~~~~ 84 (220)
++++|+||+|||||+++|.|. .+...+.+.+.|.++.- -+--+|. . +.......+..
T Consensus 32 v~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~ 100 (237)
T COG0410 32 VALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLL 100 (237)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHh
Confidence 799999999999999999999 44467888888765421 0111111 0 00011111111
Q ss_pred cCCcEEEEEEe--CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703 85 RGAVGALVVYD--ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD 160 (220)
Q Consensus 85 ~~~~~~i~v~d--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 160 (220)
-. .+... .......+.+.+++..+........-.++.|.++-++. +++++.+|++.++| +.++.
T Consensus 101 ~g----~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi--------aRALm~~PklLLLDEPs~GLa 168 (237)
T COG0410 101 LG----AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI--------ARALMSRPKLLLLDEPSEGLA 168 (237)
T ss_pred hh----hhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH--------HHHHhcCCCEEEecCCccCcC
Confidence 11 11111 11111255566666667666655555555555555444 56999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 161 STNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|.-++++|+.|.++..+ +.++++++|+...|..+|||.|||.+|+++.+|+++++.
T Consensus 169 P~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 169 PKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 99999999999999976 789999999999999999999999999999999988865
No 160
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=1.7e-19 Score=143.20 Aligned_cols=155 Identities=18% Similarity=0.110 Sum_probs=105.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhcCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYRGA 87 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~~ 87 (220)
+|+++|++|||||||+|+|.+..+...++.+.+++.....+...+. .++.+|||||..... ......+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998765544433333322233333332 468899999975321 1233467889
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 166 (220)
|++++|+|+++..+.. ..++..+.. ...|+++++||+|+.... ........+....+. .++.+||+++.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999998876664 223333332 357899999999985321 112223333333343 789999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
+++++.+.+.+
T Consensus 155 L~~~l~~~l~~ 165 (270)
T TIGR00436 155 LAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHhCCC
Confidence 99999887754
No 161
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=7.8e-23 Score=163.48 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=116.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-------EEEecCCcc---hhhhhhHHhhcC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-------QIWDTAGQE---RFRAVTSAYYRG 86 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-------~~~d~~g~~---~~~~~~~~~~~~ 86 (220)
++++||||||||||++.|++...+ ..|.+.+.|....- .+--.+..+ +.......+..-
T Consensus 34 ~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~ 102 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFF 102 (293)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHH
Confidence 899999999999999999999443 56677666643211 011111111 111111110000
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST 162 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~ 162 (220)
+. ++-.......+.+.+++..+.... .....-++.|+|+.+. .|.+++.+|++.++| ||++|+.
T Consensus 103 ~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~--------ia~aL~~~P~lliLDEPt~GLDp~ 170 (293)
T COG1131 103 AR----LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLS--------IALALLHDPELLILDEPTSGLDPE 170 (293)
T ss_pred HH----HhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHH--------HHHHHhcCCCEEEECCCCcCCCHH
Confidence 00 000000112233444444432221 2223335555555543 356999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHHH-hhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 163 NVEAAFEVVIREIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
++.++++.|.++..++ .+++++||.++++..+||+|++|++|+++..|+++++
T Consensus 171 ~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999986 8999999999999999999999999999999988774
No 162
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.84 E-value=6.3e-20 Score=128.01 Aligned_cols=114 Identities=32% Similarity=0.597 Sum_probs=83.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCC--CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDS--NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~--~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
||+|+|++|||||||+++|.+..+.. .+.++.+................+.+||++|+..+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999998771 1111111222222444555556689999999988777777778999999999
Q ss_pred EeCCCcccHHHHHHH---HHHHHhhCCCCCcEEEEEecCC
Q 027703 94 YDITRRSSFDSVKRW---LEELTTHCDTAVGRMLVGNKCD 130 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~v~~k~D 130 (220)
||.+++.+++.+..+ +..+... ..+.|++++|||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999998655 4444443 34599999999998
No 163
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.3e-22 Score=149.44 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703 131 LDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANS 207 (220)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~ 207 (220)
|....++.++.|+++++++++.+.| ++++||.+.+.+++.+.++..+ +.|+++.-|+++.|+.||+|++-|++|+++
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 3444556677788999999999999 9999999999999999999977 899999999999999999999999999999
Q ss_pred CCCCCcccc
Q 027703 208 SKGSMMDFS 216 (220)
Q Consensus 208 ~~g~~~~~~ 216 (220)
++|++++++
T Consensus 228 fDg~~~el~ 236 (258)
T COG3638 228 FDGPASELT 236 (258)
T ss_pred EeCChhhhh
Confidence 999998865
No 164
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-19 Score=123.43 Aligned_cols=156 Identities=21% Similarity=0.396 Sum_probs=122.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.++|.++|..++||||++..|.... +....||+++.....+ + +++.+++||++|++..+..|..|+....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt--y--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT--Y--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE--e--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 5899999999999999999997764 3445567666555433 3 568999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 167 (220)
.|+.+....++++..+.. +........++++.+||+|++.++ ++.|...+.. +..+.+..++++++.+..+-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999888777776655444 333334568889999999998754 6666544433 34556777999999999999
Q ss_pred HHHHHHHHH
Q 027703 168 FEVVIREIY 176 (220)
Q Consensus 168 ~~~l~~~~~ 176 (220)
+.|+.+...
T Consensus 170 lswlsnn~~ 178 (180)
T KOG0071|consen 170 LSWLSNNLK 178 (180)
T ss_pred HHHHHhhcc
Confidence 999987653
No 165
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=2.5e-21 Score=139.66 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=121.4
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc---------hhhhhhHHhhc--
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE---------RFRAVTSAYYR-- 85 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~~-- 85 (220)
|.|+|.+|||||||+++|.-.+-| ..+.+..++..+.+. .|-.|.. +.+......++
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k-~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~F 102 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLK-RDKDGQLKPADKRQLQRLRTRLGMVFQHF 102 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEee-eCCCCCeeeCCHHHHHHHHHHhhHhhhhc
Confidence 789999999999999999988655 346666666665543 2333321 11111011111
Q ss_pred ----------C-CcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeE
Q 027703 86 ----------G-AVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFF 153 (220)
Q Consensus 86 ----------~-~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
+ ..+-+-|.-.+..+..+....++..+..... ...|.. +....++....+++++-+|.+.+
T Consensus 103 NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~-------LSGGQQQR~aIARaLameP~vmL 175 (256)
T COG4598 103 NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVML 175 (256)
T ss_pred chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc-------cCchHHHHHHHHHHHhcCCceEe
Confidence 1 1111223333333334444444444221111 122322 22233444566889999999999
Q ss_pred EE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 154 ME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 154 ~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
|| |||+||+-+.+++.-+.++.+++.|++++||.+.+|...+++++++++|.|.++|+|+++
T Consensus 176 FDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 176 FDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHH
Confidence 99 999999999999999999999999999999999999999999999999999999999875
No 166
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.1e-21 Score=155.50 Aligned_cols=177 Identities=19% Similarity=0.237 Sum_probs=116.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-h--HHhhcCCcEEE-E
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV-T--SAYYRGAVGAL-V 92 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-~--~~~~~~~~~~i-~ 92 (220)
++++||+||||||||+.|.|.+-+ ..|.+.++|+.+. |.+-..+-..+ . ..+|.+..+.- +
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt----~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVT----DLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECC----CCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 799999999999999999999544 5677777775542 22221111110 0 11112111100 0
Q ss_pred EEeCCC-cccHHHHHHHHHHH------HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCC
Q 027703 93 VYDITR-RSSFDSVKRWLEEL------TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTN 163 (220)
Q Consensus 93 v~d~~~-~~~~~~~~~~~~~l------~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~ 163 (220)
-|.... ......+..-..+. ....+..+.-++.|.++. +..+++++++|++.++| .|.+|..-
T Consensus 97 af~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQR--------VAlaRAlVr~P~v~L~DEPlSnLDa~l 168 (338)
T COG3839 97 AFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQR--------VALARALVRKPKVFLLDEPLSNLDAKL 168 (338)
T ss_pred hhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHH--------HHHHHHHhcCCCEEEecCchhHhhHHH
Confidence 000000 01122222222221 122222233344444444 45566999999999999 99999999
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 164 VEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 164 v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..++..+|.++..+ +.|.+++|||+.+|+.+||||++|++|++...|+|.++-
T Consensus 169 R~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 169 RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 99999999998877 899999999999999999999999999999999998864
No 167
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=4e-19 Score=134.48 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=102.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhh--CcCCCCC------------cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR--NEFDSNS------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT 80 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~ 80 (220)
-+|+++|.+|+|||||++++.. ..+...+ .++.+.........+..+.+.+.+||++|+..+....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4554433 1222233333333444456788999999999988888
Q ss_pred HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHH-------hCCe
Q 027703 81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-STEEGKSLAEE-------EGLF 152 (220)
Q Consensus 81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-~~~~~~~~~~~-------~~~~ 152 (220)
..+++.+|++++|+|+++.. +.....++..+.. ...|+++++||+|+...+.. ..+++..+... .+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 89999999999999998743 2333333333322 35788999999998643211 12334444422 2578
Q ss_pred EEEeccCCCCCHHHH
Q 027703 153 FMETSALDSTNVEAA 167 (220)
Q Consensus 153 ~~~~Sa~~~~~v~~l 167 (220)
++.+||+++.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999888555
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=4e-19 Score=130.12 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=99.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----hhHHhhcCCcEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----VTSAYYRGAVGAL 91 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----~~~~~~~~~~~~i 91 (220)
+|+++|++|+|||||+++|.+.... .. ..+.+.+.+. .+||+||...... .....++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~-------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--AR-------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cc-------cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 6999999999999999999875311 11 2233334333 2699999732221 2223468999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC--eEEEeccCCCCCHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL--FFMETSALDSTNVEAAFE 169 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~l~~ 169 (220)
+|+|.++..++.. .|+..+ ....|+++++||.|+.. ...+....++...++ +++.+|+++++|++++++
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998776533 333332 12468899999999864 235556676667664 899999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
++.+.+.+
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99988754
No 169
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=1.1e-19 Score=131.07 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=106.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh------hhhhHHh--hcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF------RAVTSAY--YRG 86 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~------~~~~~~~--~~~ 86 (220)
++|+++|.|+||||||+|+|+|........|..+++...+.+.+.+ ..+.+.|+||.... ......+ ..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999986666667788888888888877 46778999995322 1222333 368
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
+|+++.|.|+++. ++-..+..++... ..|++++.||.|......+.. +...+.+..+++++.+||.++.|+++
T Consensus 79 ~D~ii~VvDa~~l---~r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNL---ERNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGH---HHHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCH---HHHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999763 2222233333332 589999999999765443333 35678888899999999999999999
Q ss_pred HHHHH
Q 027703 167 AFEVV 171 (220)
Q Consensus 167 l~~~l 171 (220)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99865
No 170
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=9.3e-19 Score=147.02 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=112.5
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh--------hHH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV--------TSA 82 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~--------~~~ 82 (220)
...+||+++|++|||||||+|+|++..... ...++.+.+.....+.+++ ..+.+|||+|+...... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 456899999999999999999999875432 2234445666667777776 45689999998543221 235
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST 162 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (220)
+++.+|++++|+|.+++.+++.. |+..+.. ...|+++++||.|+... +...+....+.+++.+|+++ .
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence 67899999999999988887765 5555432 35799999999998642 12244555667888999998 6
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|+.++++.+.+.+.+
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887765
No 171
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=1.1e-18 Score=127.03 Aligned_cols=146 Identities=23% Similarity=0.239 Sum_probs=104.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYR 85 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~ 85 (220)
++|+++|++|+|||||++++.+..+.. ...++.+.......+...+ ..+.+||++|...... .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999886432 2223333333344444443 5778999999654321 1234567
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.++++++|+|++++.+......+.. ....|+++++||.|+...... .......+++.+|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777766544332 235899999999998654322 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 027703 166 AAFEVVIREI 175 (220)
Q Consensus 166 ~l~~~l~~~~ 175 (220)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 172
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.2e-20 Score=134.05 Aligned_cols=171 Identities=29% Similarity=0.536 Sum_probs=146.1
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
.+++|++++|..|.||||+.++.+..+|+..+.+|.+.+..+-.+..+...+++..||+.|++.+......++-+....+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 67999999999999999999999999999999999998887666655555699999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
++||++....+..+.+|...+.+.+. ++|+++.|||.|+.. +. .....-.+.+..++.|++.|++..-|.+.-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~-r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKA-RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccc-cc-cccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999877654 599999999999754 22 1112224555667899999999999999999999
Q ss_pred HHHHHHHhhhhhcC
Q 027703 172 IREIYSNISRKVLN 185 (220)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (220)
++.+..+-...|+.
T Consensus 165 arKl~G~p~Lefva 178 (216)
T KOG0096|consen 165 ARKLTGDPSLEFVA 178 (216)
T ss_pred hhhhcCCCCeEEEe
Confidence 99998776666654
No 173
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.82 E-value=8.3e-22 Score=144.47 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=114.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe-----------EEEEEEEecCCcc-hhhh-hhHHh
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-----------EVKAQIWDTAGQE-RFRA-VTSAY 83 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-----------~~~~~~~d~~g~~-~~~~-~~~~~ 83 (220)
++++|+||+||||+++.|.+.-.|+++. +.+++- .+-+.+ +-.|.. +... ....|
T Consensus 31 ~GlLG~NGAGKTT~LRmiatlL~P~~G~-----------v~idg~d~~~~p~~vrr~IGVl~-~e~glY~RlT~rEnl~~ 98 (245)
T COG4555 31 TGLLGENGAGKTTLLRMIATLLIPDSGK-----------VTIDGVDTVRDPSFVRRKIGVLF-GERGLYARLTARENLKY 98 (245)
T ss_pred EEEEcCCCCCchhHHHHHHHhccCCCce-----------EEEeecccccChHHHhhhcceec-CCcChhhhhhHHHHHHH
Confidence 6899999999999999999996665444 433331 111111 111111 1000 00111
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL 159 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~ 159 (220)
+. -+++..+.+...++.++.+. +....+...--++-|.|+. +..|++++.+|.+.++| +|++
T Consensus 99 Fa------~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqk--------V~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 99 FA------RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQK--------VAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HH------HHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHH--------HHHHHHHhcCCCeEEEcCCCCCc
Confidence 11 12233333333333333322 2222222222244455554 45567999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 160 DSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
|-.....+.+.+.++..++.+++|.||.+.++...||+|+++++|+++..|+.+++
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997664
No 174
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=1.3e-21 Score=157.74 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|+.+..++++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 44477999999999999 999999999999999988866689999999999999999999999999999999998875
No 175
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=8.7e-19 Score=143.03 Aligned_cols=156 Identities=20% Similarity=0.294 Sum_probs=106.6
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCccc-ceeeeeEEEEEeCCeEEEEEEEecCCcch-hhh-------hhHH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKAT-IGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRA-------VTSA 82 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t-~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~-------~~~~ 82 (220)
+...+|+++|.+|||||||+|+|.+..+....+.. .+.....+.+..++ .++.||||||... +.. ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 44579999999999999999999998775432221 22333345555555 4678999999742 111 1123
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHH-HHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccC
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKR-WLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSAL 159 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 159 (220)
.+..+|++++|+|..+ ++..... ++..+... ..|.++++||+|+... ...++.+.+.... ..++.+||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4678999999999765 4444433 33334332 3466789999998642 2445555555433 578999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~ 177 (220)
++.|+++++++|.+.+.+
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999999987654
No 176
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.4e-21 Score=158.83 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| +|++|.....++.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 143 valARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 44477999999999999 9999999999999999988876 89999999999999999999999999999999998775
No 177
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=3.2e-18 Score=142.38 Aligned_cols=161 Identities=19% Similarity=0.125 Sum_probs=116.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----h---hhhhHHhhcCC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----F---RAVTSAYYRGA 87 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----~---~~~~~~~~~~~ 87 (220)
..|+++|.|+|||||||++|++........+..+..+..+.+.+.+ ...+.+||+||... . ...+......+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999998764333333444555556565542 24788999999632 1 11222334568
Q ss_pred cEEEEEEeCCCc---ccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703 88 VGALVVYDITRR---SSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST 162 (220)
Q Consensus 88 ~~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (220)
+++++|+|+++. ..++....|..++..+.. ...|.++++||+|+... .+....+....+.+++.+||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999764 567777777777776543 35899999999998431 234445555666789999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 027703 163 NVEAAFEVVIREIYSNIS 180 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~~~~ 180 (220)
|++++++++.+.+.+...
T Consensus 314 GI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 314 GLDELLYAVAELLEETPE 331 (424)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 999999999998876433
No 178
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=6.9e-19 Score=149.77 Aligned_cols=175 Identities=22% Similarity=0.180 Sum_probs=119.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhh-
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVT- 80 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~- 80 (220)
..+||+++|.+|||||||+++|++..+. ....++.+.+.....+.+++. .+.+|||+|..+ +....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999998653 333445555555566666665 456899999521 11111
Q ss_pred HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHH-HHHHhCCeEEEec
Q 027703 81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKS-LAEEEGLFFMETS 157 (220)
Q Consensus 81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~-~~~~~~~~~~~~S 157 (220)
..+++.+|++++|+|+++..+++... ++..+.. ...|+++++||+|+....... ..+... +......+++.+|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23568999999999999988888764 3333332 357999999999986422110 111111 1112236789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc
Q 027703 158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS 194 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~ 194 (220)
|+++.|++++|+.+.+.+.+ ....+.|+.++.+...
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~-~~~~i~t~~ln~~~~~ 399 (472)
T PRK03003 364 AKTGRAVDKLVPALETALES-WDTRIPTGRLNAWLGE 399 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHH-hcccCCHHHHHHHHHH
Confidence 99999999999999887664 3345567776665543
No 179
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.1e-20 Score=157.45 Aligned_cols=180 Identities=18% Similarity=0.222 Sum_probs=119.4
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-------------EEEecCCcchhhhhhHHh
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-------------QIWDTAGQERFRAVTSAY 83 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-------------~~~d~~g~~~~~~~~~~~ 83 (220)
.+++|+||+|||||++.|.|.. .++.+.+.++|+.+.+ ..-+..-.+. .....+.
T Consensus 37 ~aL~GeNGAGKSTLmKiLsGv~-----------~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~-LsVaeNi 104 (500)
T COG1129 37 HALLGENGAGKSTLMKILSGVY-----------PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN-LSVAENI 104 (500)
T ss_pred EEEecCCCCCHHHHHHHHhCcc-----------cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC-ccHHHHh
Confidence 6899999999999999999994 4456777777765432 1111111111 1111221
Q ss_pred h-c-CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703 84 Y-R-GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL 159 (220)
Q Consensus 84 ~-~-~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~ 159 (220)
+ - ....-..+. +...........+..+..... |--.+ .+|.....+.++.++++..+.++.++| ||++
T Consensus 105 fLgre~~~~~g~i--d~~~m~~~A~~~l~~lg~~~~---~~~~v---~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaL 176 (500)
T COG1129 105 FLGREPTRRFGLI--DRKAMRRRARELLARLGLDID---PDTLV---GDLSIAQRQMVEIARALSFDARVLILDEPTAAL 176 (500)
T ss_pred hcccccccCCCcc--CHHHHHHHHHHHHHHcCCCCC---hhhhh---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 1 0 000000111 112222223333332221111 21111 455555667788899999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC-Ccccc
Q 027703 160 DSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS-MMDFS 216 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~-~~~~~ 216 (220)
+...++.+|+.+.++..++.+++|+||.++++.+.|||++||+||+.+..+. ..+++
T Consensus 177 t~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~ 234 (500)
T COG1129 177 TVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS 234 (500)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC
Confidence 9999999999999999999999999999999999999999999999999888 46543
No 180
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=2.3e-21 Score=156.25 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| ++++|+.+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34477999999999999 999999999999999988876689999999999999999999999999999999988765
No 181
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=7.8e-21 Score=159.45 Aligned_cols=179 Identities=18% Similarity=0.167 Sum_probs=116.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe--------------EEEEEEEecCCcchhhhhhH
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK--------------EVKAQIWDTAGQERFRAVTS 81 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~--------------~~~~~~~d~~g~~~~~~~~~ 81 (220)
.++++|++|||||||.+.|.+...|.. +.+.+++. .+++.|-|-...-..+....
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~-----------G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~ 387 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSS-----------GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC-----------ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence 489999999999999999999965543 33434332 23333433332222222222
Q ss_pred HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH--h-hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703 82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELT--T-HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T 156 (220)
Q Consensus 82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (220)
.....+-.+-.. .........+.+++..+. . .....+.-++.|.++.++ .|++++.+|++.+.| +
T Consensus 388 ~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRva--------IARALa~~P~lli~DEp~ 457 (539)
T COG1123 388 DILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA--------IARALALEPKLLILDEPV 457 (539)
T ss_pred HHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHH--------HHHHHhcCCCEEEecCCc
Confidence 222211111000 001111122323333211 1 112233345556555544 466999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
|++|.....++++.+.++..+ +.+.+|+|||+..+..+||||+||++|+|++.|+.+++
T Consensus 458 SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHH
Confidence 999999999999999999987 99999999999999999999999999999999976654
No 182
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.81 E-value=3.2e-22 Score=163.76 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|+....++++.+.++..+ +.|++++||+++++..+||++++|++|+++..|+++++
T Consensus 138 V~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 138 VGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 44488999999999999 9999999999999999988766 89999999999999999999999999999999998875
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 3
No 183
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.81 E-value=2.6e-21 Score=157.54 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| +|++|+.+...+++.+.++..+ +.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 33488999999999999 9999999999999999998876 89999999999999999999999999999999998765
No 184
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.2e-21 Score=144.88 Aligned_cols=180 Identities=18% Similarity=0.162 Sum_probs=113.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE-----
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL----- 91 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i----- 91 (220)
.+++||+||||||||+.+........ .-...|.+.++|.++.-.-.|.. ..+......+++++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lNRmndl~~------~~r~~G~v~~~g~ni~~~~~d~~---~lRr~vGMVFQkPnPFp~SIyd 106 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMNDLIP------GARVEGEVLLDGKNIYDPKVDVV---ELRRRVGMVFQKPNPFPMSIYD 106 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhcccCc------CceEEEEEEECCeeccCCCCCHH---HHHHHheeeccCCCCCCchHHH
Confidence 58999999999999999976632211 11235778788766532111111 11111111122221110
Q ss_pred ------EEEeCCCcccHHHHH-------HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703 92 ------VVYDITRRSSFDSVK-------RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T 156 (220)
Q Consensus 92 ------~v~d~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (220)
-..-..+ ..++++. .+|.+++....++.--++.|.++.| ..|++++-+|++.++| |
T Consensus 107 NVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL--------cIARalAv~PeVlLmDEPt 177 (253)
T COG1117 107 NVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL--------CIARALAVKPEVLLMDEPT 177 (253)
T ss_pred HHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH--------HHHHHHhcCCcEEEecCcc
Confidence 0000111 1122211 2344555444443433444444444 4466999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 157 SALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
||+||.+...+-+.|.++- ++.|++++||++..|.+.+|+.++|.+|++++.|..+++
T Consensus 178 SALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 178 SALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred cccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999888877666554 789999999999999999999999999999999987764
No 185
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=1.1e-18 Score=147.17 Aligned_cols=149 Identities=23% Similarity=0.236 Sum_probs=110.1
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh--------hHHh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV--------TSAY 83 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~--------~~~~ 83 (220)
..++|+++|++|||||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||+|...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999997643 23334444555556666665 46789999997543221 2346
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
+..+|++++|+|.+++.+++....|.. ....|+++++||+|+....... .....+++.+|++++.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 788999999999998887775533322 3457999999999986433211 33456789999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 186
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.81 E-value=4.1e-21 Score=157.29 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
....+++++.++++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|++++
T Consensus 144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 344488999999999999 9999999999999999998876 7899999999999999999999999999999999887
Q ss_pred cc
Q 027703 215 FS 216 (220)
Q Consensus 215 ~~ 216 (220)
+.
T Consensus 224 i~ 225 (353)
T PRK10851 224 VW 225 (353)
T ss_pred HH
Confidence 64
No 187
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=1.2e-20 Score=141.97 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=76.5
Q ss_pred CCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703 132 DSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSS 208 (220)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~ 208 (220)
...+.....-||+++.+|.+.++| ||++||.+...+-+.|.++... +.|++++|||++.+..+|||++++.||+|+.
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 333334455688999999999999 9999999999988888888877 8999999999999999999999999999999
Q ss_pred CCCCcccccc
Q 027703 209 KGSMMDFSCC 218 (220)
Q Consensus 209 ~g~~~~~~~~ 218 (220)
.|+++++.-+
T Consensus 227 ~Gt~~el~~s 236 (263)
T COG1127 227 EGTPEELLAS 236 (263)
T ss_pred eCCHHHHHhC
Confidence 9999987654
No 188
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.1e-21 Score=147.71 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=129.5
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC---cEEEEE
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA---VGALVV 93 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~---~~~i~v 93 (220)
.+++|+||+||||.+++|++. .+++.+.++++|..+.....+.-|.-+ .....+++. |.+.|+
T Consensus 31 ~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLP---EERGLy~k~tv~dql~yl 96 (300)
T COG4152 31 FGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLP---EERGLYPKMTVEDQLKYL 96 (300)
T ss_pred EEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccCh---hhhccCccCcHHHHHHHH
Confidence 689999999999999999999 555678888888776655554444211 111111111 111111
Q ss_pred ---EeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHH
Q 027703 94 ---YDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEA 166 (220)
Q Consensus 94 ---~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~ 166 (220)
-.+...+.-..+..|++.+..... +.+.-++-||.+.+ .-..+++.+|.+.++| .|++||.|++.
T Consensus 97 a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI--------QfisaviHePeLlILDEPFSGLDPVN~el 168 (300)
T COG4152 97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI--------QFISAVIHEPELLILDEPFSGLDPVNVEL 168 (300)
T ss_pred HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH--------HHHHHHhcCCCEEEecCCccCCChhhHHH
Confidence 112234455667778777543332 33444555555554 3455899999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 167 AFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 167 l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+.+.+.++...+.|++|.+|.+..+.+.||++.+|+.|+.|.+|+.++++
T Consensus 169 Lk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 169 LKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred HHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHH
Confidence 99999999999999999999999999999999999999999999988765
No 189
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.81 E-value=5e-22 Score=161.85 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
....+++++.+|++.++| ++++|+.+..++++.|.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 344577999999999999 999999999999999998877789999999999999999999999999999999998875
No 190
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=2.5e-18 Score=129.10 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=108.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCccc----------------ceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKAT----------------IGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV 79 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t----------------~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~ 79 (220)
+|+++|.+|||||||+++|.+.........+ .+.......+.. ....+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999998776544221 112222222222 2467889999999887777
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHH---------
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAEE--------- 148 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~~--------- 148 (220)
+..+++.+|++++|+|+.+..+.... .++..+.. ...|+++++||.|+...... ..++.++.++.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 88888999999999999876654433 33333332 46899999999998642211 12234444433
Q ss_pred -----hCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 149 -----EGLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 149 -----~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
...+++++|++++.|+.++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346788999999999999999998764
No 191
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-21 Score=156.47 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|..+..++++.+.++..+ +.+++++||+++++..+||++++|++|+++++|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34477999999999999 9999999999999999988776 89999999999999999999999999999999988764
No 192
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.8e-21 Score=154.84 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
.....+++++.++++.++| ++++|+.+..++++.+.++..++.+++++||+++++..+||++++|++|++++.|++++
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 3344588999999999999 99999999999999999887668999999999999999999999999999999999866
Q ss_pred cc
Q 027703 215 FS 216 (220)
Q Consensus 215 ~~ 216 (220)
+.
T Consensus 225 ~~ 226 (274)
T PRK13647 225 LT 226 (274)
T ss_pred hc
Confidence 53
No 193
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.2e-21 Score=157.72 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.++++.++| ++++|+.+...+++.+.++..++.+++++||+++.+..+|||+++|++|+++.+|+++++
T Consensus 174 valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33478999999999999 999999999999999998876689999999999999999999999999999999998775
No 194
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.80 E-value=3.6e-21 Score=157.86 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
..-+++++.++++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|++++
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 34478999999999999 9999999999999999988877 6899999999999999999999999999999999887
Q ss_pred cc
Q 027703 215 FS 216 (220)
Q Consensus 215 ~~ 216 (220)
+.
T Consensus 226 ~~ 227 (362)
T TIGR03258 226 LY 227 (362)
T ss_pred HH
Confidence 63
No 195
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.80 E-value=7e-21 Score=157.75 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...+++++++|++.++| ++++|.....++++.|.++..++.++++++|+++++..+|||+++|++|+++..|+++++.
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 34477999999999999 9999999999999999988766889999999999999999999999999999999988753
No 196
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=3.9e-18 Score=143.66 Aligned_cols=162 Identities=17% Similarity=0.107 Sum_probs=113.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHHhhcC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSAYYRG 86 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~ 86 (220)
...|+++|.||||||||+++|++........+..+..+..+.+.+.+ ..+.+||+||.... ......+...
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46799999999999999999998765433334444555666676655 57889999996321 1122335577
Q ss_pred CcEEEEEEeCCCc----ccHHHHHHHHHHHHhhC-----------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703 87 AVGALVVYDITRR----SSFDSVKRWLEELTTHC-----------DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL 151 (220)
Q Consensus 87 ~~~~i~v~d~~~~----~~~~~~~~~~~~l~~~~-----------~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~ 151 (220)
++++++|+|+++. ..+..+..+..++..+. ....|+++++||+|+...... .+.....+...++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 8999999999752 34555555555554332 135799999999998643321 1222233344578
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 178 (220)
+++.+|++++.|+.+++++|.+.+...
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999998763
No 197
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=2.9e-18 Score=143.30 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=111.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh--hhhh------HHhhc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF--RAVT------SAYYR 85 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~--~~~~------~~~~~ 85 (220)
..+|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+. ..+.+|||+|.... ...+ .....
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 468999999999999999999998765444445555556666666543 25678999997321 1111 23458
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe-EEEeccCCCCCH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF-FMETSALDSTNV 164 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 164 (220)
.+|++++|+|++++.++..+..|...+........|+++++||+|+..... ... . ....+.+ ++.+||+++.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCCH
Confidence 899999999999988877775554444443334689999999999853211 111 1 1123334 477999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYS 177 (220)
Q Consensus 165 ~~l~~~l~~~~~~ 177 (220)
+++++++.+.+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988854
No 198
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=6e-21 Score=144.30 Aligned_cols=177 Identities=19% Similarity=0.191 Sum_probs=121.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
=+++++|+||||||||++.|.+...| +.+.+..+++-..+.-...+-++.......-++... +.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~-----~~ 117 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL-----IL 117 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcccCCCcccchHHHHHHHHH-----Hh
Confidence 47999999999999999999999544 556666665432221112222222211111121111 11
Q ss_pred eCCCcccHHHHH--HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703 95 DITRRSSFDSVK--RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV 170 (220)
Q Consensus 95 d~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~ 170 (220)
-.+..+.-+.+. ..+.++......+....+-|.+..|.-+- +...+|++.++| .+.-|..-.+.-.+.
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsi--------a~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSV--------ATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhh--------hhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 122222222221 12445666666666666667777765433 666789999999 888999999999999
Q ss_pred HHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 171 VIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 171 l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+.++.+++.+++++|||+..++++||++++|++|+++..|+++++
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v 234 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence 999988899999999999999999999999999999999999875
No 199
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.80 E-value=7.1e-18 Score=117.90 Aligned_cols=164 Identities=23% Similarity=0.347 Sum_probs=132.7
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCC--CCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchh-hhhhHHhhcCCc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS--NSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERF-RAVTSAYYRGAV 88 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~--~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~-~~~~~~~~~~~~ 88 (220)
..+|++++|-.++|||++|..+.-....+ ...+|+. +.+...+..+ +-.-.+.++||.|.... ...-..|++-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 35899999999999999999997765444 3445554 2233444332 33347889999997655 455667889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
++++||+..+++||+.+.-+-.++.+..+ +.+|+++++||+|++..+.+..+.|...++..++.++++++.|..+..+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998766666665543 56899999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|.++...+.+
T Consensus 167 f~~l~~rl~~ 176 (198)
T KOG3883|consen 167 FTYLASRLHQ 176 (198)
T ss_pred HHHHHHhccC
Confidence 9999988754
No 200
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-19 Score=127.61 Aligned_cols=161 Identities=24% Similarity=0.348 Sum_probs=123.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcC---CCC--CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEF---DSN--SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~---~~~--~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
.|-+.|+|+.+||||||+.+...... ..- ...+.+.....+++... ...+.|||..|+...++.|..||..++
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 47899999999999999998854421 111 12222333455555555 467889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHH------HHHHhCCeEEEeccCCC
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKS------LAEEEGLFFMETSALDS 161 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~ 161 (220)
++++++|+++++.|+.....+..+... ..+..|+++.+||+|++++. ..++... +...++.++..+||+++
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 999999999999999988777775443 34679999999999998744 3333322 23345678888999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIYSN 178 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~~~ 178 (220)
.|+++-.+|+...+..+
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999888765
No 201
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.1e-21 Score=155.56 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|+.+..++++.+.++..+ +.+++++||+++++..+|||+++|++|+++.+|+++++
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 233 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34488999999999999 9999999999999999988776 89999999999999999999999999999999987764
No 202
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.1e-21 Score=156.03 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 44478999999999999 9999999999999999988876 89999999999999999999999999999999998875
No 203
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.80 E-value=7.3e-21 Score=155.81 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| +|++|.....++.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 143 vaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 44488999999999999 9999999999999999998876 89999999999999999999999999999999998875
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 223 ~ 223 (353)
T TIGR03265 223 Y 223 (353)
T ss_pred H
Confidence 3
No 204
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=121.44 Aligned_cols=168 Identities=29% Similarity=0.529 Sum_probs=144.5
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
.++.-.+||.++|++..|||||+-..-+.++.+++..+.++....+++.+.+..+.+.+||+.|+.++.....-...++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 35556799999999999999999999999999888899999999999999999999999999999988888888888999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC--CCCC---HHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI--RDVS---TEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~--~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
+++++||.+.+..+..+.+|+.......+..+|+ ++|+|-|.-.. ++.- ..+++.+++-.+..++.+|+....|
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999999988777766775 67999996421 1111 1237888888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
+..+|+.+...+.+
T Consensus 174 v~KIFK~vlAklFn 187 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998877764
No 205
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=2.3e-18 Score=130.18 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=101.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC----cC---CCCCcccceeeeeEEEEEeC------------CeEEEEEEEecCCcch
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN----EF---DSNSKATIGVEFQTQVVDID------------GKEVKAQIWDTAGQER 75 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~----~~---~~~~~~t~~~~~~~~~i~~~------------~~~~~~~~~d~~g~~~ 75 (220)
++|+++|.+|+|||||+++|.+. .+ +....+..+.......+.+. +....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999873 11 11112222222222233332 2357889999999876
Q ss_pred hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHH------
Q 027703 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAE------ 147 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~------ 147 (220)
+..........+|++++|+|+.+.........+. .... ...|+++++||+|+...... ..++....+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998765554432222 1111 14688999999997532211 1222222111
Q ss_pred -HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 148 -EEGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 148 -~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
..+++++.+|++++.|++++++++.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23578999999999999999999987664
No 206
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1e-20 Score=155.97 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| +|++|......+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 34477999999999999 9999999999999999988876 88999999999999999999999999999999998775
No 207
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.6e-20 Score=144.83 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 34477999999999999 9999999999999999998877 78999999999999999999999999999999988765
No 208
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.80 E-value=3.9e-20 Score=133.69 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=115.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh---HHhhcCCcE-
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT---SAYYRGAVG- 89 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~---~~~~~~~~~- 89 (220)
.=+++|+||+|+|||||+|.|.|...|. .+.+.+++.+..- ++...+.-++. .+.+.+.+.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~-----------~G~i~i~g~d~t~----~~P~~RPVSmlFQEnNLFaHLtV~ 89 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPA-----------SGEILINGVDHTA----SPPAERPVSMLFQENNLFAHLTVA 89 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCC-----------CceEEEcCeecCc----CCcccCChhhhhhccccchhhhhh
Confidence 3468999999999999999999997664 4566666644311 11111100000 011111110
Q ss_pred --EEEEEeCC---CcccHHHHHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703 90 --ALVVYDIT---RRSSFDSVKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD 160 (220)
Q Consensus 90 --~i~v~d~~---~~~~~~~~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 160 (220)
+-+-.... +....+.+...... +.-..+.-++.++.|.++.++. ++.++++.++.++| .||+|
T Consensus 90 qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvAL--------ARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 90 QNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVAL--------ARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred hhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHH--------HHHHhccCCeEEecCchhhcC
Confidence 00000100 01111122222222 1111222234456666665443 55999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 161 STNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+--..+++..+.++-.+ +.|++++||.++.+...+++++++.+|+|..+|+.+++.
T Consensus 162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 162 PALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999876 899999999999999999999999999999999987753
No 209
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.79 E-value=1.4e-20 Score=155.08 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+.-+++++.+|++.++| +|++|......+.+.|.++..+ +.+++++|||+.++..+||++++|++|+++..|+++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 44478999999999999 9999999999999999998876 89999999999999999999999999999999998775
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 233 ~ 233 (375)
T PRK09452 233 Y 233 (375)
T ss_pred H
Confidence 3
No 210
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=5.7e-18 Score=128.20 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=100.5
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc----------hhhhhhH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE----------RFRAVTS 81 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~----------~~~~~~~ 81 (220)
+..++|+++|.+|||||||+++|.+..+.....++.+.......... ...+.+||+||.. .+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 35688999999999999999999997654444444332222111111 2578899999952 2222333
Q ss_pred HhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHHhCCeEEEe
Q 027703 82 AYYRGA---VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEEEGLFFMET 156 (220)
Q Consensus 82 ~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 156 (220)
.++..+ +++++++|.++....... .....+.. ...|+++++||.|+....... .++...........++.+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 444444 567788887765444332 11122221 257889999999975422111 122333333336788999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027703 157 SALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
|++++.|++++++.|.+++.+
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999877643
No 211
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.5e-21 Score=153.02 Aligned_cols=77 Identities=12% Similarity=0.140 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+++.|.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33477999999999999 999999999999999998876688999999999999999999999999999999987664
No 212
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.79 E-value=8.6e-21 Score=156.09 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703 137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~ 213 (220)
+....+++++.++++.++| +|++|+....++.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++
T Consensus 171 QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ 250 (382)
T TIGR03415 171 QRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250 (382)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 3344588999999999999 9999999999999999998776 899999999999999999999999999999999987
Q ss_pred cc
Q 027703 214 DF 215 (220)
Q Consensus 214 ~~ 215 (220)
++
T Consensus 251 ei 252 (382)
T TIGR03415 251 EI 252 (382)
T ss_pred HH
Confidence 75
No 213
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.79 E-value=1.6e-19 Score=148.20 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=120.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh--hhhhHHh------hcCCc
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF--RAVTSAY------YRGAV 88 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~--~~~~~~~------~~~~~ 88 (220)
-+++|+||+|||||++.|.|. +.++.+.+.++|+.+.+. -|....- ..+..+. +..++
T Consensus 33 HaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v~G~~v~~~---sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGL-----------YQPDSGEIRVDGKEVRIK---SPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEECCEEeccC---CHHHHHHcCCcEEeeccccccccchhh
Confidence 489999999999999999999 444678888888766532 2210000 0000111 11111
Q ss_pred EEEEEEeCC--CcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCC
Q 027703 89 GALVVYDIT--RRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTN 163 (220)
Q Consensus 89 ~~i~v~d~~--~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~ 163 (220)
-+++-.... ..-........+.++..... +-.|--.+ .||+-..++.+|..+++.+++++.++| ||-++|..
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V---~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV---ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee---ecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 111111110 01133444444444433221 11111112 566655667788899999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703 164 VEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS 211 (220)
Q Consensus 164 v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~ 211 (220)
++++|+.+.++..++++++++||.+++++.+|||+.||++|+++...+
T Consensus 176 ~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 176 ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999877666
No 214
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=8.4e-18 Score=143.16 Aligned_cols=153 Identities=21% Similarity=0.221 Sum_probs=106.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhHHhh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTSAYY 84 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~ 84 (220)
..+|+|+|.+|||||||+|+|.+..+.. ...++.+.+...+.+.+.+. .+.+|||+|... +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 4789999999999999999999876432 33344455555566666653 578899999752 222344567
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCC
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTN 163 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (220)
..+|++++|+|+++..++.. ..+...+.. ...|+++++||+|+.... .+.. .+. ..++ ..+.+||+++.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~-~~~-~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAA-ALW-SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhH-HHH-hcCCCCeEEEEcCCCCC
Confidence 89999999999998766543 233333432 358999999999985321 1111 221 2222 346899999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
+.++++++.+.+.+
T Consensus 187 i~eL~~~i~~~l~~ 200 (472)
T PRK03003 187 VGDLLDAVLAALPE 200 (472)
T ss_pred cHHHHHHHHhhccc
Confidence 99999999987744
No 215
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=1e-17 Score=138.53 Aligned_cols=162 Identities=20% Similarity=0.117 Sum_probs=114.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHHhhcCC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSAYYRGA 87 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~ 87 (220)
..|+++|.||||||||+|+|++........+..+..+..+.+.+.+ ...+.++|+||.... .......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999998765333334444555666666543 235789999997531 12223456789
Q ss_pred cEEEEEEeCC---CcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCC
Q 027703 88 VGALVVYDIT---RRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSALD 160 (220)
Q Consensus 88 ~~~i~v~d~~---~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (220)
+++++|+|++ +...++....|+.++..+.. ...|.++++||+|+.....+ .+....+....+ ..++.+||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999987 44567777777777665432 35789999999998643221 222333333333 4688999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYSN 178 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~~ 178 (220)
+.++++++++|.+.+.++
T Consensus 318 g~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CcCHHHHHHHHHHHhhhC
Confidence 999999999999988764
No 216
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.2e-20 Score=140.54 Aligned_cols=175 Identities=18% Similarity=0.245 Sum_probs=118.2
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCc---chhhhhhHHhhcCCcEEE--
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ---ERFRAVTSAYYRGAVGAL-- 91 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~---~~~~~~~~~~~~~~~~~i-- 91 (220)
.++.|++|+|||||+|+|.|..-| +.+.+..+|... .|.... +......-..+++|..+-
T Consensus 27 TAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L----~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVL----VDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEe----ecccCCcccChhhheeeeEeeccccccce
Confidence 589999999999999999999544 455555555321 122210 011111111112221110
Q ss_pred -----EEEe--CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703 92 -----VVYD--ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST 162 (220)
Q Consensus 92 -----~v~d--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~ 162 (220)
+.|- ......|+.+-.++. +.......+..++.|.|+.++. ++++...|.+.++| .|++|-.
T Consensus 92 tVrgNL~YG~~~~~~~~fd~iv~lLG-I~hLL~R~P~~LSGGEkQRVAI--------GRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 92 TVRGNLRYGMWKSMRAQFDQLVALLG-IEHLLDRYPGTLSGGEKQRVAI--------GRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred EEecchhhhhcccchHhHHHHHHHhC-cHHHHhhCCCccCcchhhHHHH--------HHHHhcCCCeeeecCchhhcccc
Confidence 0111 112345555544322 2222222344467788877655 45999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 163 NVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
--.+++-++-++..+ +.-++++||+++++.++||++++|++|++...|..+++
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 999999999999988 88899999999999999999999999999999998775
No 217
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5.3e-21 Score=152.77 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|++|++++.|+++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33478999999999999 9999999999999999988876 89999999999999999999999999999999998764
No 218
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=5.7e-18 Score=123.36 Aligned_cols=145 Identities=18% Similarity=0.110 Sum_probs=98.2
Q ss_pred EEECCCCCcHHHHHHHHhhCcC--CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhcCC
Q 027703 18 VLIGDSAVGKSNLLSRFARNEF--DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYRGA 87 (220)
Q Consensus 18 ~ilG~~g~GKSTll~~l~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~ 87 (220)
+++|.+|||||||+++|.+... .... +..+.+........++ ..+.+||+||...... .....+..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 5899999999999999998742 2222 2223333334444444 5788999999876432 334567889
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 166 (220)
|++++++|..+..+.... .....+.. ...|+++++||.|+...... .......+. .++++|++++.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999775544332 12222322 24899999999998653321 223334455 688999999999999
Q ss_pred HHHHHHHH
Q 027703 167 AFEVVIRE 174 (220)
Q Consensus 167 l~~~l~~~ 174 (220)
+++++.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999864
No 219
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.79 E-value=6.6e-20 Score=143.53 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 34477999999999999 9999999999999999988765 78999999999999999999999999999999998765
No 220
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.79 E-value=1.6e-20 Score=151.42 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| ++++|+.+...+.+.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 34477999999999999 999999999999999998876689999999999999999999999999999999998765
No 221
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=8.5e-21 Score=147.85 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 34478999999999999 9999999999999999988775 78999999999999999999999999999999987765
No 222
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.79 E-value=3.6e-20 Score=143.81 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|++.++
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 33477999999999999 9999999999999999988776 78999999999999999999999999999999987554
No 223
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.3e-21 Score=151.24 Aligned_cols=78 Identities=10% Similarity=0.133 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
....+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|++|+++..|++++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHH
Confidence 344478999999999999 9999999999999999988876 8999999999999999999999999999999999877
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 225 ~ 225 (277)
T PRK13652 225 I 225 (277)
T ss_pred H
Confidence 5
No 224
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.1e-21 Score=152.35 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33478999999999999 999999999999998887766689999999999999999999999999999999998775
No 225
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.2e-20 Score=154.00 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| +|++|.....++.+.+.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 34478999999999999 9999999999999999988876 89999999999999999999999999999999998775
No 226
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=9.7e-20 Score=134.68 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=115.7
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI 96 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 96 (220)
++|+||||+|||||++.|+|. ..+..+.+.+++... ..|-. .........+.+...+-|-|.+
T Consensus 30 ~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l--~~~~~----~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPL--NSWPP----EELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred EEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcCh--hhCCH----HHHHHHhhhcccCcccccceEH
Confidence 689999999999999999998 444566676766332 11111 1112233344444444443332
Q ss_pred CC------------cc--cHHH-HHHHHHH--HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC------CeE
Q 027703 97 TR------------RS--SFDS-VKRWLEE--LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG------LFF 153 (220)
Q Consensus 97 ~~------------~~--~~~~-~~~~~~~--l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~------~~~ 153 (220)
.+ .. .-.. ....+.. +..........++.|.++.+.. ++.+++-+. +.+
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql--------ARvLaQl~~~v~~~r~L~ 164 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL--------ARVLAQLWPPVPSGRWLF 164 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH--------HHHHHHccCCCCCCceEE
Confidence 11 01 1111 1122221 2222223344455555555433 457777653 458
Q ss_pred EE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 154 ME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 154 ~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+| ||++|..-....+..+.+...++..++.+-||++.+..||||+++|.+||++..|+|+++.
T Consensus 165 LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 165 LDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 88 9999999999999999999999999999999999999999999999999999999998864
No 227
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8.2e-21 Score=151.90 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34488999999999999 9999999999999999988765 89999999999999999999999999999999988764
No 228
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4.9e-21 Score=153.23 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33477999999999999 999999999999999988765689999999999999999999999999999999987764
No 229
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=9.4e-21 Score=153.38 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|..+...+++.+.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 185 vaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 185 VAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 34488999999999999 999999999999999988876689999999999999999999999999999999998754
No 230
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=8.2e-20 Score=142.82 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 33477999999999999 9999999999999999988765 78999999999999999999999999999999988764
No 231
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3.4e-21 Score=157.51 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| +|++|+.+...+++.|.++..+ +.+++++||+++++..+||++++|++|++++.|+++++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 34477999999999999 9999999999999999988776 79999999999999999999999999999999987765
No 232
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=1.2e-17 Score=134.25 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=103.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYRG 86 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~ 86 (220)
-.|+++|++|||||||+|+|.+..+...+..+.+.+.....+... ...++.++||||..... ......+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 459999999999999999999987655444333332222222222 23688999999975322 223345688
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVE 165 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~ 165 (220)
+|++++++|+++...... ...+..+. ....|+++++||.|+.............+.... ...++.+||+++.|+.
T Consensus 85 ~D~il~vvd~~~~~~~~~-~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~ 160 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGD-EFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVD 160 (292)
T ss_pred CCEEEEEEeCCCCCChhH-HHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHH
Confidence 999999999987322211 12222222 235799999999998632222222333443333 3578899999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYS 177 (220)
Q Consensus 166 ~l~~~l~~~~~~ 177 (220)
++++++.+.+.+
T Consensus 161 ~L~~~L~~~l~~ 172 (292)
T PRK00089 161 ELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHhCCC
Confidence 999999988754
No 233
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=4e-20 Score=142.85 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++...+.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 44477999999999999 999999999999999988766678999999999999999999999999999999887654
No 234
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.78 E-value=7.3e-20 Score=150.38 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 44477999999999999 9999999999999999998876 78999999999999999999999999999999988765
No 235
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.4e-20 Score=143.24 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
....+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|++++
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 344477999999999999 9999999999999999988876 7899999999999999999999999999999999876
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 224 ~ 224 (239)
T cd03296 224 V 224 (239)
T ss_pred H
Confidence 5
No 236
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=2.1e-17 Score=121.17 Aligned_cols=156 Identities=20% Similarity=0.151 Sum_probs=100.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHhhc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAYYR 85 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~ 85 (220)
..+|+++|++|||||||++++.+..+................. .......+.+||++|...... .......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999886543332222111111111 222346788999999753221 2344578
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNV 164 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 164 (220)
.++++++|+|.+++..... ..+...+... ..|+++++||.|+........+....+.... ..+++.+|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~~~~-~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGD-EFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCchH-HHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 8999999999988622211 1222223222 4788999999998642222222233333333 367899999999999
Q ss_pred HHHHHHHHHH
Q 027703 165 EAAFEVVIRE 174 (220)
Q Consensus 165 ~~l~~~l~~~ 174 (220)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 237
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.6e-20 Score=143.54 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 33477999999999999 9999999999999999998776 89999999999999999999999999999999988765
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 229 ~ 229 (233)
T cd03258 229 F 229 (233)
T ss_pred h
Confidence 3
No 238
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.9e-20 Score=150.73 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|......+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 44477999999999999 9999999999999999988876 78999999999999999999999999999999998775
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 217 ~ 217 (352)
T PRK11144 217 W 217 (352)
T ss_pred H
Confidence 3
No 239
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=3.8e-17 Score=120.74 Aligned_cols=155 Identities=25% Similarity=0.179 Sum_probs=102.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCC-cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-----------hhH
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-----------VTS 81 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-----------~~~ 81 (220)
.++|+++|.+|+|||||+++|.+..+.... .++.+.......+...+. .+.+||++|...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 378999999999999999999987643222 222223333344445543 467899999643211 112
Q ss_pred HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-HHh----CCeEEEe
Q 027703 82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-EEE----GLFFMET 156 (220)
Q Consensus 82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~ 156 (220)
..+..+|.+++|+|.+++.+..... ++..+.. ...|+++++||.|+........+...+.. ... ..+++.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999999887765542 2222222 24789999999998754322233222222 222 3678999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027703 157 SALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~ 174 (220)
|++++.|+.++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 240
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.77 E-value=1.2e-19 Score=143.06 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 34477999999999999 999999999999999998876678999999999999999999999999999999988764
No 241
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.2e-19 Score=143.03 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 34477999999999999 999999999999999988766688999999999999999999999999999999887764
No 242
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.77 E-value=2.9e-17 Score=142.57 Aligned_cols=157 Identities=22% Similarity=0.250 Sum_probs=113.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCc-------CCCCCc--------ccceeeeeEEEEEe---CCeEEEEEEEecCCcch
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNE-------FDSNSK--------ATIGVEFQTQVVDI---DGKEVKAQIWDTAGQER 75 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~-------~~~~~~--------~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~~ 75 (220)
.-+++++|..++|||||+++|+... +...+. ..+++......+.+ ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4479999999999999999998752 222111 12222222223333 45668999999999999
Q ss_pred hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---e
Q 027703 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL---F 152 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~---~ 152 (220)
+...+..++..+|++++|+|+++..+.+....|+..+. ...|+++++||.|+.... .......+....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 98888899999999999999999877777666554332 357899999999986432 12223344444444 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q 027703 153 FMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 153 ~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
++.+||+++.|+.+++++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 788999999999999999988764
No 243
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.8e-19 Score=142.77 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 44477999999999999 9999999999999999988775 78999999999999999999999999999999988764
No 244
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=5.5e-17 Score=137.02 Aligned_cols=159 Identities=24% Similarity=0.183 Sum_probs=108.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-----------
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV----------- 79 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~----------- 79 (220)
...++++++|.+|+|||||+++|++..... ...+..+.+.....+..++. .+.+|||+|..+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 456899999999999999999999876432 22233334444445555553 6788999996433221
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----hCCeEE
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-E----EGLFFM 154 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~----~~~~~~ 154 (220)
....++.+|++++|+|+++..+..... ++..+.. ...|+++++||+|+.. .....++....+. . ..++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceE
Confidence 124678899999999999887776653 3333322 3578999999999862 1111222222222 1 246889
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
++||+++.|+.++++++.+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 245
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=8.5e-18 Score=130.66 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=114.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh--------hhhHHhhcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR--------AVTSAYYRG 86 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~ 86 (220)
--|+|+|+|+||||||+|+|.|....-.++..++++.....+...+ +.++.|.||||..... ......+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 3589999999999999999999999998888888777766665554 5688999999975432 234456788
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVE 165 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~ 165 (220)
+|.++|+.|++....- ..+++.+..+. .+.|++++.||.|..............+... +...++.+||+.+.|+.
T Consensus 86 vDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 86 VDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred CcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 9999999999874433 22333332222 3579999999999765443111112122222 22367889999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYSN 178 (220)
Q Consensus 166 ~l~~~l~~~~~~~ 178 (220)
.+.+.+...+.++
T Consensus 162 ~L~~~i~~~Lpeg 174 (298)
T COG1159 162 TLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999888654
No 246
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=1.4e-20 Score=146.31 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 33477999999999999 999999999999999988776688999999999999999999999999999999987664
No 247
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=6.5e-20 Score=140.83 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 34477999999999999 9999999999999999988775 789999999999999999999999999988765
No 248
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.5e-20 Score=152.85 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|+.+..++.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 173 v~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 44477999999999999 9999999999999999988765 78999999999999999999999999999999987765
No 249
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.1e-20 Score=149.85 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 9999999999999999988765 78999999999999999999999999999999987654
No 250
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.9e-20 Score=149.63 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| |+++|..+..++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34488999999999999 9999999999999999988876 89999999999999999999999999999999987765
No 251
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1e-16 Score=115.95 Aligned_cols=162 Identities=23% Similarity=0.351 Sum_probs=127.3
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCC--------CCCc--ccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFD--------SNSK--ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~--------~~~~--~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~ 76 (220)
+...+....||+|.|+-++||||+++.+...... .++. +..++..+.+.+.+++. ..+.++++||+.++
T Consensus 3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF 81 (187)
T COG2229 3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERF 81 (187)
T ss_pred cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHH
Confidence 3445666789999999999999999999888631 1222 22445666677766653 35677999999999
Q ss_pred hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh--CCeEE
Q 027703 77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE--GLFFM 154 (220)
Q Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 154 (220)
...|..+.+.+.+.++++|.+....+ ...+.+..+.... ++|+++..||+||.. ..+.++.+.++..+ .++.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCcee
Confidence 99999999999999999999999988 5555556655443 289999999999986 55777777777766 78999
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~ 174 (220)
..++.++.+..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998877655
No 252
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.77 E-value=3.6e-20 Score=149.19 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-+++++.+|++.++| ++++|+.+...+++.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 44477999999999999 999999999999998887754 689999999999999999999999999999999988763
No 253
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.77 E-value=6.1e-20 Score=143.13 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 33477999999999999 9999999999999999888766789999999999999999999999999999999987753
No 254
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=2.3e-19 Score=137.02 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS 207 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~ 207 (220)
..-+++++.++++.++| ++++|+.+...+.+.+.++..++.+++++||+++++..+||++++|++|+++
T Consensus 135 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 135 LAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 34477999999999999 9999999999999999888766889999999999999999999999999875
No 255
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.77 E-value=3.8e-20 Score=143.48 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.|.++..+ .+++++||+++++..+||++++|++|+++..|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 34477999999999999 9999999999999999988776 8999999999999999999999999999999998764
No 256
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.77 E-value=4.1e-18 Score=117.57 Aligned_cols=160 Identities=25% Similarity=0.322 Sum_probs=121.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+|+.++|-.++|||||++.|.+...... .||.++. ...+.+++ .+.+++||.+|+..-+..|.+||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 5569999999999999999999988754332 3454443 34454543 589999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHH----HHHHHhCCeEEEeccCCCCCHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGK----SLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
||.|++++..|+++.+.+.++.... ....|+++-.||+|+..+... .++++ +.++...+.+-++|++.+.++..
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-EEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-HHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999999999888777765433 356899999999998653321 22221 22333445677799999999999
Q ss_pred HHHHHHHHHH
Q 027703 167 AFEVVIREIY 176 (220)
Q Consensus 167 l~~~l~~~~~ 176 (220)
-.+|+.....
T Consensus 170 g~~wv~sn~~ 179 (185)
T KOG0074|consen 170 GSDWVQSNPE 179 (185)
T ss_pred cchhhhcCCC
Confidence 9998875443
No 257
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=3e-20 Score=140.96 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
+..|++++.+|++.+.| |+++|..+-+++++.+.++..+ +.+++++|||...|. +|||++.|+||++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 44577999999999999 9999999999999999999887 899999999999988 8999999999983
No 258
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.7e-20 Score=145.18 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 44477999999999999 999999999999999988776689999999999999999999999999999999998765
No 259
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.77 E-value=1.8e-17 Score=126.29 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=98.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-CCc--ccceeeeeEEEEEeC---------------------------C----
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSK--ATIGVEFQTQVVDID---------------------------G---- 60 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~--~t~~~~~~~~~i~~~---------------------------~---- 60 (220)
++|+++|.+|+|||||+++|.+..... ..+ ...+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999998763211 111 111111110011110 1
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--C
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--S 138 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~ 138 (220)
....+.|||+||+..+..........+|++++|+|++++.........+..+... ...|+++++||.|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157889999999888777777778899999999998742111111222222221 22468889999998642111 1
Q ss_pred HHHHHHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 139 TEEGKSLAEE---EGLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 139 ~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
.++...+... ..++++.+||+++.|++++++++.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1223333332 256789999999999999999998754
No 260
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.1e-19 Score=142.34 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
...-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 344477999999999999 9999999999999999988776 7999999999999999999999999999999998766
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 235 ~ 235 (265)
T PRK10575 235 L 235 (265)
T ss_pred h
Confidence 4
No 261
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.8e-19 Score=140.60 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=75.8
Q ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceee
Q 027703 123 MLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVT 199 (220)
Q Consensus 123 ~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~ 199 (220)
++.|.++.+. .|-+++.+|++.+.| |+|+|-....++++.+.++..+ +.+++++|||+..+.++||||+
T Consensus 154 lSGGMrQRV~--------IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~ 225 (316)
T COG0444 154 LSGGMRQRVM--------IAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA 225 (316)
T ss_pred cCCcHHHHHH--------HHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE
Confidence 4555555543 355899999999999 9999999999999999999986 8999999999999999999999
Q ss_pred eeecCCCCCCCCCcccc
Q 027703 200 LVKDGANSSKGSMMDFS 216 (220)
Q Consensus 200 ~~~~G~~~~~g~~~~~~ 216 (220)
||..|+|++.|+++++.
T Consensus 226 VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 226 VMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEECcEEEEeCCHHHHh
Confidence 99999999999998764
No 262
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.76 E-value=5e-20 Score=149.71 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 109 valaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 44477999999999999 9999999999999999988876 89999999999999999999999999999999998775
No 263
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-20 Score=150.56 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|..+..++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~ 241 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33488999999999999 9999999999999999998875 89999999999999999999999999999999998765
No 264
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.76 E-value=7.5e-20 Score=141.16 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 34477999999999999 999999999999998888765 58999999999999999999999999999999998765
No 265
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.76 E-value=1.6e-19 Score=139.50 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
....+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||+++++ +|+++..|+++++
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 344477999999999999 9999999999999999987766889999999999999999999999 8999999988765
No 266
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.76 E-value=5e-20 Score=141.45 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 34477999999999999 9999999999999999988875 789999999999999999999999999998765
No 267
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.2e-19 Score=140.06 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeee--cCCCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVK--DGANSSKGSM 212 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~--~G~~~~~g~~ 212 (220)
..-+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|+ +|++++++++
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 34477999999999999 9999999999999999988765 7899999999999999999999999 7999888765
No 268
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.76 E-value=6e-20 Score=149.27 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.++++.++| +|++|..+..++++.|.++..+ +.+++++|||++.+..+||++++|++|++++.|+++++
T Consensus 170 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i 249 (331)
T PRK15079 170 IGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249 (331)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 44488999999999999 9999999999999999988776 89999999999999999999999999999999998765
No 269
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=4.4e-20 Score=144.28 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 44478999999999999 999999999999999888766689999999999999999999999999999999987765
No 270
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.5e-20 Score=147.74 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++.+. +||++++|++|+++.+|+++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 44488999999999999 9999999999999999998876 899999999999985 7999999999999999988764
No 271
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.76 E-value=2.9e-20 Score=144.38 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+..++.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 33477999999999999 9999999999999999988775 78999999999999999999999999999999998776
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 220 ~ 220 (230)
T TIGR03410 220 D 220 (230)
T ss_pred C
Confidence 4
No 272
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=5.9e-19 Score=135.29 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
....+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 344477999999999999 9999999999999999988765 789999999999999999999999999987654
No 273
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.76 E-value=2.1e-19 Score=138.02 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++| +++.|
T Consensus 141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 44477999999999999 9999999999999999988767889999999999999999999999986 66554
No 274
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.76 E-value=5.9e-17 Score=140.11 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=109.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
.-.+|+++|.+++|||||+++|.+..+.....++++.......+.+++. ..+.||||||+..|...+...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3478999999999999999999998877665544443333334444332 267899999999988888888899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh---------CCeEEEeccCCCCC
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE---------GLFFMETSALDSTN 163 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 163 (220)
|+|+++...-+... .+... .....|+++++||+|+... ..++....+... ..+++++||+++.|
T Consensus 165 VVda~dgv~~qT~e-~i~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIE-AISHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHH-HHHHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99988754333322 22222 2235789999999998642 233333333322 25789999999999
Q ss_pred HHHHHHHHHH
Q 027703 164 VEAAFEVVIR 173 (220)
Q Consensus 164 v~~l~~~l~~ 173 (220)
+.++++++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999874
No 275
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.76 E-value=2.1e-19 Score=138.25 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 33477999999999999 999999999999999988766688999999999999999999999999975
No 276
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.1e-20 Score=144.61 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 34488999999999999 9999999999999988887666899999999999999999999999999999999887653
No 277
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=9.6e-17 Score=124.61 Aligned_cols=151 Identities=26% Similarity=0.232 Sum_probs=102.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh-------hhhHHhhcCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR-------AVTSAYYRGAV 88 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~ 88 (220)
+++++|++|||||||+++|.+........+..+..+..+.+.+++ ..+++||+||..... .....+++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 799999999999999999998864333323333455667777765 577889999974321 12345788999
Q ss_pred EEEEEEeCCCcc-cHHHHHHHHHHH-----------------------------------------Hh------------
Q 027703 89 GALVVYDITRRS-SFDSVKRWLEEL-----------------------------------------TT------------ 114 (220)
Q Consensus 89 ~~i~v~d~~~~~-~~~~~~~~~~~l-----------------------------------------~~------------ 114 (220)
++++|+|+++.. ....+.+.+..+ ..
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999987754 333332222210 00
Q ss_pred ------------hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 115 ------------HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 115 ------------~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
......|+++++||+|+.. .+++..+... ..++.+||.++.|++++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0012358899999999742 3444444433 3578899999999999999888754
No 278
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.1e-20 Score=148.80 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 999999999999999998876689999999999999999999999999999999998765
No 279
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.2e-19 Score=137.99 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
...+++++.+|++.++| ++++|..+...+++.+.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus 140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 34477999999999999 9999999999999999988776 789999999999999999999999999988765
No 280
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.76 E-value=6.1e-19 Score=138.84 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~ 213 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++.+|+.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 34477999999999999 9999999999999999988765 789999999999999999999999999999988754
No 281
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.2e-19 Score=141.96 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 34477999999999999 999999999999998887765688999999999999999999999999999999988764
No 282
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.9e-20 Score=147.56 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 34477999999999999 9999999999999999988765 78999999999999999999999999999999987765
No 283
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.75 E-value=3.5e-20 Score=142.79 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 33477999999999999 9999999999999999888666889999999999999999999999999987654
No 284
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=9.5e-19 Score=124.37 Aligned_cols=180 Identities=18% Similarity=0.267 Sum_probs=121.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhHHhhcCC-
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTSAYYRGA- 87 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~- 87 (220)
.++++||+|+|||||++.|.-.+.+. ++.+.+.++ .+.|-.+++...-.. ..++|.-..
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~-----------sg~l~ia~~--~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph 96 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPR-----------SGTLNIAGN--HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH 96 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCC-----------CCeEEeccc--ccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence 68999999999999999998887664 344545443 233334443211000 111111011
Q ss_pred --------cEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703 88 --------VGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T 156 (220)
Q Consensus 88 --------~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (220)
.+-.-|.-.++.+......++++.+.... ....|. .+....+..+..+++++.+|.+.+|| +
T Consensus 97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-------hlsggqqqrvaiaralmmkpqvllfdept 169 (242)
T COG4161 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-------HLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce-------ecccchhhhHHHHHHHhcCCcEEeecCcc
Confidence 11112333344444444444444432211 122333 12344555677888999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 157 SALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.++||+-..++.+.|.++...+.+.+++||..+.+...|.+++.|++|+|+++|++.-+
T Consensus 170 aaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred cccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999999999999999999999999998544
No 285
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.8e-19 Score=140.83 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 33477999999999999 9999999999999999988775 89999999999999999999999999999999988765
No 286
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.75 E-value=6.3e-20 Score=144.39 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 9999999999999999988876 89999999999999999999999999999999987664
No 287
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=8e-20 Score=145.81 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
....+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++.. ||++++|++|+++.+|++++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHH
Confidence 344488999999999999 9999999999999999988765 8999999999999986 99999999999999999876
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 231 ~ 231 (280)
T PRK13633 231 I 231 (280)
T ss_pred H
Confidence 4
No 288
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.75 E-value=3.3e-20 Score=150.80 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|..+..++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34488999999999999 9999999999999999988876 89999999999999999999999999999999998775
No 289
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.5e-19 Score=147.23 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|.....++++.|.++..+ +.+++++|||+..+..+||++++|++|++++.|+++++
T Consensus 167 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i 246 (330)
T PRK15093 167 VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246 (330)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34477999999999999 9999999999999999998775 89999999999999999999999999999999988765
No 290
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.75 E-value=5.1e-20 Score=143.57 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus 141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHH
Confidence 33477999999999999 9999999999999999988754 7899999999999975 999999999999999987654
No 291
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.75 E-value=4.3e-20 Score=145.16 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 33477999999999999 999999999999999888776688999999999999999999999999999999987664
No 292
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.75 E-value=8.1e-20 Score=140.08 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGA 205 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~ 205 (220)
..-+++++.++++.++| ++++|..+...+++.|.++..++.+++++||+++++..+||++++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 33477999999999999 99999999999999999887668899999999999999999999999985
No 293
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.75 E-value=4.4e-17 Score=141.47 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=109.0
Q ss_pred CCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh------hHHhh--cCCcEEEE
Q 027703 21 GDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV------TSAYY--RGAVGALV 92 (220)
Q Consensus 21 G~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~~~~i~ 92 (220)
|.+|||||||+|++.+..+.....++.+.+...+.+.+++. .+++||+||+..+... ...++ ..+|.++.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998876666677777777777777664 5689999998765432 22232 47899999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|+|.++.+. ...+..++. ..+.|+++++||.|+...+.+. .+...+.+..+++++++||+++.|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 112222222 2358999999999986544443 346677788899999999999999999999998
Q ss_pred HHH
Q 027703 173 REI 175 (220)
Q Consensus 173 ~~~ 175 (220)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 294
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.3e-19 Score=137.47 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 44477999999999999 9999999999999999988765 78999999999999999999999999999999987654
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=4.6e-19 Score=136.51 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=113.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|++||||||+-+.|++.. .+..|.+.++|..+.. ..
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~-----------~pt~G~i~f~g~~i~~----~~------------------------ 81 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLE-----------EPTSGEILFEGKDITK----LS------------------------ 81 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCc-----------CCCCceEEEcCcchhh----cc------------------------
Confidence 48999999999999999999994 4467788887765311 00
Q ss_pred CCCcccHHHHHHHHHHHHhh---CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV 170 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~ 170 (220)
.....+.+.+.+..+... ....+.-++.|..+ ....|++++.+|++.+.| +|++|-....++++.
T Consensus 82 --~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ--------Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnL 151 (268)
T COG4608 82 --KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ--------RIGIARALALNPKLIVADEPVSALDVSVQAQILNL 151 (268)
T ss_pred --hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh--------hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH
Confidence 112223333333332210 11112223444333 345577999999999999 999999999999999
Q ss_pred HHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 171 VIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 171 l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+.++..+ +.+.+|++||+..+..++||++||..|++++.|..+++.
T Consensus 152 L~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 152 LKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHh
Confidence 9998877 899999999999999999999999999999999988764
No 296
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.7e-20 Score=146.50 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
....+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++.+. .||++++|++|++++.|++++
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence 344488999999999999 9999999999999999988876 899999999999987 599999999999999998765
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 227 ~ 227 (279)
T PRK13635 227 I 227 (279)
T ss_pred H
Confidence 4
No 297
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5e-19 Score=139.51 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 34477999999999999 9999999999999999988776 78999999999999999999999999999999987764
No 298
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.4e-19 Score=141.57 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 34478999999999999 9999999999999999988876 78999999999999999999999999999999887654
No 299
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.75 E-value=5.7e-20 Score=145.03 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++...+.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 33488999999999999 999999999999999988776689999999999999999999999999999999987764
No 300
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.4e-20 Score=146.33 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|+.+...+++.+.++..++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHH
Confidence 44488999999999999 9999999999999999887766899999999999985 6999999999999999987764
No 301
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5e-20 Score=147.10 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33478999999999999 999999999999999988876688999999999999999999999999999999987654
No 302
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=4.6e-17 Score=118.19 Aligned_cols=151 Identities=23% Similarity=0.186 Sum_probs=102.6
Q ss_pred EECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhHHhhcCCcEE
Q 027703 19 LIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTSAYYRGAVGA 90 (220)
Q Consensus 19 ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~~~ 90 (220)
++|++|||||||+++|.+.... ....++.+............ ...+.+||++|...... ....++..++++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 23333333333333333321 35788999999764432 334577899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE---EGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
++++|..+........ +..... ....|+++++||.|+......... ...........+++.+|+.++.++.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877766654 233322 236789999999998654322221 112233345678999999999999999
Q ss_pred HHHHHHH
Q 027703 168 FEVVIRE 174 (220)
Q Consensus 168 ~~~l~~~ 174 (220)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998864
No 303
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.75 E-value=6.9e-20 Score=145.40 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 33477999999999999 9999999999999999988776 78999999999999999999999999999999987765
No 304
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=6.7e-17 Score=140.21 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=112.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC---cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN---EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~---~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
+.|+++|..++|||||+++|.+. .++.+..++.+.+.....+.+++ ..+.+||+||+..+.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 36899999999999999999973 34445555555555555555555 67899999999888777777788999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC--CHHHHHHHHHHh----CCeEEEeccCCCCCH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV--STEEGKSLAEEE----GLFFMETSALDSTNV 164 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~~v 164 (220)
+|+|+++....+.. +.+..+.. ...| +++++||+|+...... ..++...+.... +++++.+|++++.|+
T Consensus 79 LVVDa~~G~~~qT~-ehl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 79 LVVDADEGVMTQTG-EHLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence 99999874322221 22222222 2356 8999999998643221 122344555443 578999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYS 177 (220)
Q Consensus 165 ~~l~~~l~~~~~~ 177 (220)
.++++.+.++...
T Consensus 155 ~eL~~~L~~l~~~ 167 (581)
T TIGR00475 155 GELKKELKNLLES 167 (581)
T ss_pred hhHHHHHHHHHHh
Confidence 9999999877754
No 305
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.7e-20 Score=141.99 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+.+.+.+... +.+++++||+++.+..+||++++|++|+++..|
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 33477999999999999 999999999999999988765 589999999999999999999999999988765
No 306
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.74 E-value=9.9e-19 Score=134.23 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS 211 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~ 211 (220)
....+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++|+++..|+
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 344477999999999999 9999999999999999988876 7899999999999999999999999999988764
No 307
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3e-19 Score=130.71 Aligned_cols=175 Identities=18% Similarity=0.194 Sum_probs=116.0
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI 96 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 96 (220)
.+++||||+|||||+..+... ...+.|.+.+++..+ -.+++.. .......+++.+.+-.-+.+
T Consensus 30 Ts~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~----~~~~s~~--LAk~lSILkQ~N~i~~rlTV 92 (252)
T COG4604 30 TSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLEL----TSTPSKE--LAKKLSILKQENHINSRLTV 92 (252)
T ss_pred eEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeec----ccCChHH--HHHHHHHHHhhchhhheeEH
Confidence 478999999999999999988 555677787777543 2233321 11122233333322211111
Q ss_pred CC---------------cccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 97 TR---------------RSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 97 ~~---------------~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
.+ .+....+.+.++.+. ........-++.|.++.--.++ -++++.+..++| .+
T Consensus 93 ~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAM--------VlaQdTdyvlLDEPLN 164 (252)
T COG4604 93 RDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAM--------VLAQDTDYVLLDEPLN 164 (252)
T ss_pred HHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhe--------eeeccCcEEEecCccc
Confidence 11 112222333333321 1111223335556555533333 567777888888 89
Q ss_pred cCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 158 ALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
.+|-.---++++.+.++..+ +++++++-||+++|..|+|+|+-|+||+++.+|+++++-
T Consensus 165 NLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 99988888999999999988 999999999999999999999999999999999999874
No 308
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-19 Score=142.66 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=68.6
Q ss_pred HHHHHHHHH------HhCCeEEE--eccCCCCCHHHHHHHHHHHH-HHHhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703 139 TEEGKSLAE------EEGLFFME--TSALDSTNVEAAFEVVIREI-YSNISRKVLNSDAYKAELSVNRVTLVKDGANSSK 209 (220)
Q Consensus 139 ~~~~~~~~~------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~-~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~ 209 (220)
...+++++. ++++.++| ++++|..+...+.+.|.++. ..+.+++++||+++.+..+||++++|++|+++..
T Consensus 143 v~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 143 VQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 334778884 78999999 99999999999999999887 4588999999999999999999999999999999
Q ss_pred CCCccc
Q 027703 210 GSMMDF 215 (220)
Q Consensus 210 g~~~~~ 215 (220)
|+++++
T Consensus 223 ~~~~~~ 228 (258)
T PRK13548 223 GTPAEV 228 (258)
T ss_pred CCHHHH
Confidence 987664
No 309
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=4.8e-18 Score=117.53 Aligned_cols=161 Identities=24% Similarity=0.350 Sum_probs=122.6
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.++..+++.++|-.|+||||++.++.-.+.. ...||++..+.. +..++..+++||..|+...+..|..|+.+.++
T Consensus 14 g~e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 14 GPEREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred CCccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccce
Confidence 3447799999999999999999998776543 344565554443 33366899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHH-----HHHhCCeEEEeccCCCCC
Q 027703 90 ALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL-----AEEEGLFFMETSALDSTN 163 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~ 163 (220)
+|+|+|.+|..........+.. +....-++..+++++||+|.+.. ....|+... +++..+.++++||.+++|
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G 166 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG 166 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence 9999999998877766554444 33333455777888999998763 344443322 334456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
.+..++|+.+-+.+
T Consensus 167 ld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 167 LDPAMDWLQRPLKS 180 (182)
T ss_pred CcHHHHHHHHHHhc
Confidence 99999999987764
No 310
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.2e-19 Score=136.71 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++..|
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 33477999999999999 9999999999999998887666789999999999999999999999999987654
No 311
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=8.4e-20 Score=145.48 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++. .||++++|++|++++.|+++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 44477999999999999 9999999999999999988776 899999999999997 5999999999999999998764
No 312
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.5e-16 Score=134.62 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=102.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhHHhhc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTSAYYR 85 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 85 (220)
.+|+++|.+|||||||+++|.+..... ...+..+.+.....+.+.+ ..+.+|||+|... .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999886432 2223444455556666666 6789999999875 2223345678
Q ss_pred CCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703 86 GAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
.+|++++|+|..+..+... +..|+ .. ...|+++++||+|+.. . ......+ ...++ .++.+||.++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~---~~~piilv~NK~D~~~-~---~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKIL---RK---SNKPVILVVNKVDGPD-E---EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCcEEEEEECccCcc-c---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 9999999999987544433 22232 22 2579999999999643 1 1222222 23444 47889999999
Q ss_pred CHHHHHHHHHH
Q 027703 163 NVEAAFEVVIR 173 (220)
Q Consensus 163 ~v~~l~~~l~~ 173 (220)
|+.++++.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999987
No 313
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.9e-19 Score=140.31 Aligned_cols=77 Identities=8% Similarity=0.066 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...-+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++.+..+||+++++ +|+++..|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 344477999999999999 9999999999999999887666889999999999999999999777 8999999998775
No 314
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.74 E-value=5.8e-20 Score=142.66 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 134 v~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 44477999999999999 9999999999999999988775 78999999999999999999999999999999988765
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 214 ~ 214 (230)
T TIGR02770 214 F 214 (230)
T ss_pred H
Confidence 3
No 315
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.74 E-value=9.9e-19 Score=138.34 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 34477999999999999 9999999999999999988765 78999999999999999999999999999999998765
No 316
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.74 E-value=4.7e-19 Score=138.64 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 34478999999999999 999999999999998888755 689999999999999999999999999999999887753
No 317
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=5.9e-19 Score=138.96 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeee--cCCCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVK--DGANSSKGSM 212 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~--~G~~~~~g~~ 212 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|+ +|+++.+++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 33477999999999999 9999999999999999887654 7899999999999999999999999 5999887654
No 318
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=9.4e-17 Score=119.99 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=91.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhhH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVTS 81 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~~ 81 (220)
...++|+|+|++|+|||||+++|.+..+.....++.+.......+..++ .+.+||+||... +.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 4568999999999999999999999864333333332222222222232 578999999531 222223
Q ss_pred Hhhc---CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHh--CCeEE
Q 027703 82 AYYR---GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEEE--GLFFM 154 (220)
Q Consensus 82 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~~--~~~~~ 154 (220)
.+++ .++++++|+|.++..+..... ++..+.. ...|+++++||+|+..... ...++.+..+... ...++
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 3444 357899999998766655542 2333322 2578999999999753221 1223344444443 34799
Q ss_pred EeccCCCCCH
Q 027703 155 ETSALDSTNV 164 (220)
Q Consensus 155 ~~Sa~~~~~v 164 (220)
.+||+++.|+
T Consensus 169 ~~Sa~~g~gi 178 (179)
T TIGR03598 169 LFSSLKKTGI 178 (179)
T ss_pred EEECCCCCCC
Confidence 9999999986
No 319
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=1.7e-16 Score=139.44 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=111.2
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCccccee--eeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGV--EFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~--~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....|+|+|..++|||||+++|.+..+.....++++. ......+..++....+.||||||+..|...+...+..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4568999999999999999999988776544433332 22222333334457899999999999988888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-------Hh--CCeEEEeccCCC
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-------EE--GLFFMETSALDS 161 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-------~~--~~~~~~~Sa~~~ 161 (220)
++|+|+++....+.... +..+. ....|+++++||+|+.... .++....+. .. .++++.+||+++
T Consensus 323 ILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999987544333222 22222 2357999999999986422 232222221 12 368999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREI 175 (220)
Q Consensus 162 ~~v~~l~~~l~~~~ 175 (220)
.|+.++++++..+.
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999998764
No 320
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.74 E-value=8.1e-19 Score=140.99 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=122.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe---------------EEEEEEEecCCcchhhhhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK---------------EVKAQIWDTAGQERFRAVT 80 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~~~~~d~~g~~~~~~~~ 80 (220)
.++++|++|||||||=.+|+....+. +.+.|.|. .+++.|-|--|....+...
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~------------G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV 382 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ------------GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTV 382 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC------------ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCH
Confidence 58999999999999999999984332 44555443 2455666666544333222
Q ss_pred HHhhcCCcEEEEEEe--CCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE
Q 027703 81 SAYYRGAVGALVVYD--ITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME 155 (220)
Q Consensus 81 ~~~~~~~~~~i~v~d--~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (220)
.+... .+ +.|-. .+..+..+.+.+.+.++.... ...+.-++.|.++.++ .|++++.+|.+.++|
T Consensus 383 ~qII~--EG-L~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIA--------IARAliLkP~~i~LD 451 (534)
T COG4172 383 GQIIE--EG-LRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIA--------IARALILKPELILLD 451 (534)
T ss_pred HHHhh--hh-hhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHH--------HHHHHhcCCcEEEec
Confidence 22211 11 22222 222333444444444432111 1223335666655544 466999999999999
Q ss_pred --eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 156 --TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 156 --~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|||+|-.-..++++.+..+..+ +.+-+|+|||+..+..+|++++||++|+|+++|+.+++.
T Consensus 452 EPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred CCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 9999999999999999888877 889999999999999999999999999999999988763
No 321
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.74 E-value=9.2e-19 Score=150.59 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|+.+...+.+.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 34477999999999999 999999999999999998876689999999999999999999999999999999988765
No 322
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.73 E-value=4.7e-19 Score=135.54 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
.-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 3477999999999999 9999999999999998887766789999999999999999999999999988765
No 323
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.73 E-value=2e-19 Score=142.56 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 33477999999999999 9999999999999999998776 78999999999999999999999999999999987664
No 324
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=6.9e-20 Score=134.30 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=121.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE---------EEEecCCcc-hhhhhhHHhhcC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA---------QIWDTAGQE-RFRAVTSAYYRG 86 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~---------~~~d~~g~~-~~~~~~~~~~~~ 86 (220)
|+++||||+||||.++++.|. +.++.+.+.+++.++.- -+--.|+.. -|+. .....+
T Consensus 33 VGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~--LtV~dN 99 (243)
T COG1137 33 VGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK--LTVEDN 99 (243)
T ss_pred EEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCcccccccchHhhc--CcHHHH
Confidence 789999999999999999999 56667777777755421 111111111 0000 001111
Q ss_pred CcEEEEEEeCCC--cccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703 87 AVGALVVYDITR--RSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD 160 (220)
Q Consensus 87 ~~~~i~v~d~~~--~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 160 (220)
..+++-+..-+. .+....+..++.++. .........++.|.+.. .|.|++++.+|++.++| .++.|
T Consensus 100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR--------~EIARaLa~~P~fiLLDEPFAGVD 171 (243)
T COG1137 100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRR--------VEIARALAANPKFILLDEPFAGVD 171 (243)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHH--------HHHHHHHhcCCCEEEecCCccCCC
Confidence 111111111111 122233445555532 33333344445555444 56677999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 161 STNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|..+.++-..+..+...+..+++.-|+.-+...+|||.|++.+|+++.+|+|+++.
T Consensus 172 PiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 172 PIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred chhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999988888888999999999999999999999999999999999999875
No 325
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.5e-19 Score=151.65 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 34477999999999999 999999999999999998876689999999999999999999999999999999998775
No 326
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.73 E-value=4.6e-19 Score=139.91 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 3377999999999999 9999999999999999988776 78999999999999999999999999999999988764
No 327
>PRK10908 cell division protein FtsE; Provisional
Probab=99.73 E-value=2.2e-19 Score=138.72 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSS 208 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~ 208 (220)
..-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 34477999999999999 99999999999999888876667899999999999999999999999998753
No 328
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.9e-19 Score=142.92 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++++.. ||++++|++|++++.|+++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 33488999999999999 9999999999999999887765 7899999999999985 999999999999999988764
No 329
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.73 E-value=6.5e-19 Score=139.59 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 34478999999999999 9999999999999999998876 89999999999999999999999999999999998765
No 330
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=2.6e-18 Score=124.56 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=125.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe------------EEEEEEEecCCcchhhhhhHHh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK------------EVKAQIWDTAGQERFRAVTSAY 83 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~------------~~~~~~~d~~g~~~~~~~~~~~ 83 (220)
.++++|.||||||||.++|.|...| ..+.+.+++. .+++.|-|.......+....+.
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqi 109 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQI 109 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhH
Confidence 5899999999999999999999544 4455555542 3455555555433333333333
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
+...- -+.-+.+.++.-+.+.+-+..+..+.+ -.+..+..+.|+. +.-|++++.+|.+.+.| ..+
T Consensus 110 Ld~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQR--------VaLARALIL~P~iIIaDeAl~~ 179 (267)
T COG4167 110 LDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQR--------VALARALILRPKIIIADEALAS 179 (267)
T ss_pred hcchh--hhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHH--------HHHHHHHhcCCcEEEehhhhhh
Confidence 22221 123344444455555554444433322 1122233455544 44566999999999999 889
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 159 LDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+|-.-..++.+..+++.++ +.+-+++++++-.++.++|.|+||++|++++.|++.++.
T Consensus 180 LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 180 LDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred ccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 9999999999999998877 899999999999999999999999999999999988764
No 331
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.73 E-value=1.6e-16 Score=121.02 Aligned_cols=116 Identities=20% Similarity=0.340 Sum_probs=87.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC--CeEEEEEEEecCCcchhhhhhHHhhcCC-cEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID--GKEVKAQIWDTAGQERFRAVTSAYYRGA-VGALV 92 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~~~i~ 92 (220)
+|+++|++|||||||+++|....+......+ . .....+... +....+.+||+||+.++...+..+++.+ +++++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-E--PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-e--ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999998876665433 1 122222221 3456789999999998888888888888 99999
Q ss_pred EEeCCCc-ccHHHHHHHHHHHHh---hCCCCCcEEEEEecCCCCCC
Q 027703 93 VYDITRR-SSFDSVKRWLEELTT---HCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 93 v~d~~~~-~~~~~~~~~~~~l~~---~~~~~~~~~~v~~k~Dl~~~ 134 (220)
|+|+.+. .++.....++..+.. ......|+++++||+|+..+
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9999987 567777666655422 12246899999999998653
No 332
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=7e-19 Score=151.12 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+..++.+.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 44477999999999999 999999999999999988866688999999999999999999999999999999988765
No 333
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.73 E-value=1.3e-18 Score=133.66 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
..-+++++.++++.++| ++++|+.+...+.+.+.++..++.+++++||+++.+..+||++++|++|++
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 33477999999999999 999999999999999998766688999999999999999999999999975
No 334
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.73 E-value=8.4e-19 Score=147.79 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| ++++|+.....+++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 152 VaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 152 LGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 34477999999999999 999999999999999988766688999999999999999999999999999999987664
No 335
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.73 E-value=1.3e-18 Score=130.14 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=100.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|+||+|||||++.|.+...+ ..+.+.+++..+. +.. ...... ...+..+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~----~~~-~~~~~~-~i~~~~q--------- 80 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLA----SLS-PKELAR-KIAYVPQ--------- 80 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECC----cCC-HHHHHH-HHhHHHH---------
Confidence 5899999999999999999998432 4566666664321 000 000000 0011111
Q ss_pred CCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVV 171 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l 171 (220)
++..+ ..........++.|.|+. ..-+++++.++++.++| ++++|..+...+.+.+
T Consensus 81 ------------~l~~~gl~~~~~~~~~~LS~G~~qr--------l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 140 (180)
T cd03214 81 ------------ALELLGLAHLADRPFNELSGGERQR--------VLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140 (180)
T ss_pred ------------HHHHcCCHhHhcCCcccCCHHHHHH--------HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 22221 111111122233333333 34477999999999999 9999999999999999
Q ss_pred HHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 172 IREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 172 ~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus 141 ~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 141 RRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 887766 789999999999999999999999999987654
No 336
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.73 E-value=1.2e-18 Score=136.72 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=68.0
Q ss_pred HHHHHHHHH-------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703 139 TEEGKSLAE-------EEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSK 209 (220)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~ 209 (220)
...+++++. ++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++.+
T Consensus 135 v~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 135 VRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 344778886 56899999 999999999999999988876689999999999999999999999999999999
Q ss_pred CCCccc
Q 027703 210 GSMMDF 215 (220)
Q Consensus 210 g~~~~~ 215 (220)
|+++++
T Consensus 215 g~~~~~ 220 (248)
T PRK03695 215 GRRDEV 220 (248)
T ss_pred CCHHHH
Confidence 987654
No 337
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.73 E-value=2.4e-19 Score=139.75 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++..|
T Consensus 162 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 34477999999999999 9999999999999999988765 789999999999999999999999999987664
No 338
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.73 E-value=6.8e-19 Score=136.09 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+++++.++..++.+++++||+++++..+||++++|++|+++..|
T Consensus 151 v~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 44478999999999999 9999999999999999988766789999999999999999999999999988765
No 339
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=1.2e-18 Score=149.81 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..++.+++++|||++++..+||++++|++|+++..|+++++.
T Consensus 412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 33466999999999999 9999999999999999888777889999999999999999999999999999999987764
No 340
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.73 E-value=1.5e-16 Score=116.95 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=93.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~ 85 (220)
.|+++|++|||||||++.|.+..+.....++.+.......+..++ .+.+||++|... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996554444444433333332333333 788999998532 2222333333
Q ss_pred ---CCcEEEEEEeCCCcccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHH--HhCCeEEEe
Q 027703 86 ---GAVGALVVYDITRRSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAE--EEGLFFMET 156 (220)
Q Consensus 86 ---~~~~~i~v~d~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 156 (220)
..+.+++++|.....+.. .+..|+.. . ..|+++++||.|+...... ........+. ....+++.+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 346778888887653322 22233322 1 4788999999997432211 1112222222 345678899
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 027703 157 SALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~ 174 (220)
|++++.++.+++++|.++
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 341
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.73 E-value=8.3e-19 Score=138.54 Aligned_cols=77 Identities=9% Similarity=0.105 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|+.....+++.+.++...+.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 33477999999999999 999999999999999988866688999999999999999999999999999999987654
No 342
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.73 E-value=5.5e-19 Score=148.39 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 142 GKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 142 ~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|.+++.+|++.++| |+++|.....++++.|.++..+ +.+++++|||+..+.++||||+||++|++++.|+++++.
T Consensus 166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 55999999999999 9999999999999999999976 899999999999999999999999999999999998864
No 343
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.73 E-value=2.4e-19 Score=138.10 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++. +||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 33477999999999999 9999999999999999988774 789999999999987 9999999999974
No 344
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.3e-18 Score=149.67 Aligned_cols=78 Identities=12% Similarity=0.158 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...+++++.++++.++| ++++|..+..++++.+.++..++.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 44477999999999999 9999999999999999988777899999999999999999999999999999999988763
No 345
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.72 E-value=2.7e-18 Score=136.25 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=69.3
Q ss_pred HHHHHHHHH---------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 139 TEEGKSLAE---------EEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 139 ~~~~~~~~~---------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
...+++++. ++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++.+..+||++++|++|++
T Consensus 154 v~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 344778884 89999999 9999999999999999988776 78999999999999999999999999999
Q ss_pred CCCCCCccc
Q 027703 207 SSKGSMMDF 215 (220)
Q Consensus 207 ~~~g~~~~~ 215 (220)
+..|+++++
T Consensus 234 ~~~g~~~~~ 242 (272)
T PRK13547 234 VAHGAPADV 242 (272)
T ss_pred EEecCHHHH
Confidence 999987664
No 346
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.72 E-value=4.4e-19 Score=136.22 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++...+.+++++||+++.+..+||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 34477999999999999 999999999999999998876688999999999999999999999999975
No 347
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6.9e-19 Score=154.44 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..+++++.++++.++| +|++|..+..++++.|.++..+ +.+++++|||++.+..+||++++|++|++++.|+++++
T Consensus 473 ~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 3377999999999999 9999999999999999998776 89999999999999999999999999999999998775
No 348
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=8.1e-19 Score=150.72 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
.-+++++.++++.++| |+++|..+..++++.|.++...+.+++++|||++++..+||++++|++|+++..|+.+++.
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 3366999999999999 9999999999999999988777899999999999999999999999999999999887653
No 349
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3e-19 Score=141.89 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 33477999999999999 9999999999999999988776 489999999999986 7999999999999999887654
No 350
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=4.9e-16 Score=131.28 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=104.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--------hhhhhhHHhhcC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--------RFRAVTSAYYRG 86 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~ 86 (220)
+|+++|.+|||||||+|+|.+..... ...+..+.+.....+...+ ..+.+|||||.. .+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876432 2223444445555666665 368899999963 223334456788
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVE 165 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 165 (220)
+|++++|+|..+....... .+...+.. ...|+++++||+|+..... . ... ....++ .++.+||..+.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~-~---~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDA-V---AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCcccc-c---HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999875544432 22222332 2578999999999764332 1 112 334555 78999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 166 AAFEVVIREIY 176 (220)
Q Consensus 166 ~l~~~l~~~~~ 176 (220)
++++++.+.+.
T Consensus 150 ~ll~~i~~~l~ 160 (429)
T TIGR03594 150 DLLDAILELLP 160 (429)
T ss_pred HHHHHHHHhcC
Confidence 99999987763
No 351
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.72 E-value=1.9e-19 Score=141.32 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+++.+.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 999999999999998888765 48999999999999999999999999999999988765
No 352
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.72 E-value=1.4e-18 Score=135.49 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.+...+ +.+++++||+++++..+||++++|++|++++.|+++++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 44477999999999999 9999999999999999987776 78999999999999999999999999999999987764
No 353
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.8e-18 Score=148.75 Aligned_cols=78 Identities=12% Similarity=0.253 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-+++++.++++.++| ++++|+.+..++++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 44477999999999999 9999999999999999988666889999999999999999999999999999999988764
No 354
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.7e-19 Score=142.91 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+. .||++++|++|++++.|+++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 44488999999999999 9999999999999999988766 889999999999985 7999999999999999988764
No 355
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.72 E-value=1.6e-18 Score=133.13 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGA 205 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~ 205 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 44477999999999999 99999999999999999876668999999999999999999999999985
No 356
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.72 E-value=1.2e-18 Score=134.62 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+++++..+||++++|++|+++..|++.+
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 34477999999999999 99999999999999999886667899999999999999999999999999999998764
No 357
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=6.6e-16 Score=137.30 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=112.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh----------hHHh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV----------TSAY 83 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~----------~~~~ 83 (220)
.++|+++|.+|||||||+|+|++........+..+++...+.+..+ ...+.++|+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 3689999999999999999999986655445665666666665544 457789999997654321 1223
Q ss_pred --hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703 84 --YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS 161 (220)
Q Consensus 84 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (220)
...+|.+++|+|.++.+.- ..+..++.. ...|++++.||.|+...+.. ..+..++.+..+++++.+|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2478999999999875432 223334333 25899999999998654443 34566777888999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIY 176 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~ 176 (220)
.|++++.+.+.+...
T Consensus 154 ~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 154 RGIEALKLAIDRHQA 168 (772)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999887653
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=1e-17 Score=124.24 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=97.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
=.++++|+||+|||||++.|.+...+ ..+.+.+++..+.+. +..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~----~q~--------------------- 69 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYK----PQY--------------------- 69 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEE----ccc---------------------
Confidence 36899999999999999999998433 456666665322110 000
Q ss_pred eCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVI 172 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~ 172 (220)
.. ++.........+++++.++++.++| ++++|..+...+.+++.
T Consensus 70 ----~~------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 70 ----ID------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred ----CC------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 00 3322233344577999999999999 99999999999999999
Q ss_pred HHHHHH-hhhhhcCcchhhhccccceeeeeecCCCCCC--CCCc
Q 027703 173 REIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGANSSK--GSMM 213 (220)
Q Consensus 173 ~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~--g~~~ 213 (220)
+...++ .+++++||+++.+..+||++++|+++-.+.. |.|.
T Consensus 116 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 887764 8999999999999999999999999876655 5543
No 359
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.72 E-value=3.6e-19 Score=140.25 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 33477999999999999 9999999999999999988765 78999999999999999999999999999999987664
No 360
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.5e-19 Score=141.40 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++. ++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 99999999999999988874 478999999999999999999999999999999988765
No 361
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.72 E-value=6.4e-18 Score=148.32 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-||++.++|++.++| ||++|.++-..+.+.+.+... +.|.++++|+++.+. .||+|+||++|+++++|+.+++.
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHH
Confidence 44477999999999999 999999999999998776554 499999999999977 69999999999999999998764
No 362
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=1e-17 Score=123.26 Aligned_cols=133 Identities=24% Similarity=0.304 Sum_probs=97.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|+||+|||||++.|.+...+ ..+.+.+++..+. .... ....+.. +-+++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~-------~~~~-----~~~~~~~--i~~~~q 82 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVS-------FASP-----RDARRAG--IAMVYQ 82 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECC-------cCCH-----HHHHhcC--eEEEEe
Confidence 5899999999999999999998433 4566666664321 1000 0111111 223333
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~ 173 (220)
+.........-+++++.++++.++| ++++|..+...+.+.+.+
T Consensus 83 -----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 83 -----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 2222233344466999999999999 999999999999999998
Q ss_pred HHHHHhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703 174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSS 208 (220)
Q Consensus 174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~ 208 (220)
+..++.+++++||+++.+..+||++++|++|++++
T Consensus 128 ~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 128 LRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 87668899999999999999999999999998764
No 363
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.72 E-value=8.6e-19 Score=150.24 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++...+.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 143 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 143 IEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 34477999999999999 999999999999999988766688999999999999999999999999999999987765
No 364
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=6.8e-16 Score=137.29 Aligned_cols=171 Identities=22% Similarity=0.205 Sum_probs=113.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhh-h
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAV-T 80 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~-~ 80 (220)
..+||+++|.+|||||||+++|++..... ...++.+.+.....+.+++.. +.+|||+|..+ +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 45899999999999999999999987432 223334445555556666654 56899999532 1111 1
Q ss_pred HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEE
Q 027703 81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFME 155 (220)
Q Consensus 81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~ 155 (220)
...++.+|++++|+|+++..+++... ++..+.. ...|+++++||+|+..... .+.....+.. ...+++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23468899999999999988888764 3333322 3579999999999854221 1122122221 1235688
Q ss_pred eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhc
Q 027703 156 TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAE 192 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~ 192 (220)
+||+++.|+.++++.+.+...+ ....+.|+.++...
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~-~~~~i~T~~Ln~~l 636 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES-WDQRIPTGKLNAFL 636 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-hcccCChHHHHHHH
Confidence 9999999999999999987764 23334555555443
No 365
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=7.8e-16 Score=136.92 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=104.6
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhH
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTS 81 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~ 81 (220)
+....+|+|+|.+|||||||+|+|++..... ...++.+.+.......+++ ..+.+|||+|... +.....
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3445789999999999999999999876432 2234444444444444544 4678899999653 223334
Q ss_pred HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 82 AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 82 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
.++..+|++++|+|.++.....+ ..|...+.. ...|+++++||.|+.... .....+.. .+. ..+.+||++
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~ 420 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMH 420 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCC
Confidence 56789999999999976433222 133333432 368999999999975321 11112211 222 356899999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~ 177 (220)
+.|+.++++++.+.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987744
No 366
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.71 E-value=6.4e-19 Score=136.64 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|++|+++..|
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 33477999999999999 9999999999999999988876 789999999999999999999999999987654
No 367
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.6e-19 Score=140.08 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.|.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33478999999999999 99999999999999888874 468999999999999999999999999999999987765
No 368
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.71 E-value=5.2e-18 Score=133.22 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++ +++..|+++++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 33477999999999999 9999999999999999988776 78999999999999999999999965 79999988765
No 369
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.71 E-value=7e-16 Score=136.64 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=108.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
.....|+|+|..++|||||+++|.+..+.....+.++.......+.+++ ..+.||||||+..|...+...+..+|+++
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3457799999999999999999988777655444433333333444444 56889999999999888888889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-------HHh--CCeEEEeccCCCC
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-------EEE--GLFFMETSALDST 162 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~ 162 (220)
+|+|+++...-+.... +... .....|+++++||+|+.... .+.....+ ... .++++.+||+++.
T Consensus 366 LVVdAddGv~~qT~e~-i~~a---~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTIEA-INHA---KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHHHH-HHHH---HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 9999987543333222 2222 22358899999999986432 22221111 112 3689999999999
Q ss_pred CHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIRE 174 (220)
Q Consensus 163 ~v~~l~~~l~~~ 174 (220)
|+.+++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999998754
No 370
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.71 E-value=1.1e-18 Score=137.42 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|+.+...+.+.+.+...+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 34488999999999999 9999999999999999988765 89999999999999999999999999999999887654
No 371
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=1.4e-18 Score=148.92 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|+.+...+.+.+.++..++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 34477999999999999 999999999999999998876688999999999999999999999999999999887654
No 372
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.71 E-value=8.7e-19 Score=139.01 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhc
Confidence 34478999999999999 9999999999999999988776 78999999999999999999999999999999998775
No 373
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.4e-19 Score=138.24 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| +|++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 33477999999999999 999999999999998888765 58999999999999999999999999999999998765
No 374
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.71 E-value=6.9e-19 Score=135.88 Aligned_cols=68 Identities=25% Similarity=0.323 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANS 207 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~ 207 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+.. +|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 33477999999999999 9999999999999999988765 7899999999999865 7999999999875
No 375
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.71 E-value=1.6e-17 Score=130.12 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++.+..+ ||++++|++|+++..|+++++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 44477999999999999 999999999999999988866678999999999999998 899999999999999998755
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 233 ~ 233 (243)
T TIGR01978 233 K 233 (243)
T ss_pred c
Confidence 4
No 376
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.71 E-value=3.7e-18 Score=132.42 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSS 208 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~ 208 (220)
...+++++.++++.++| ++++|..+...+++.+.++..+ +.+++++||+++.+. .||++++|++|++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 34477999999999999 9999999999999999988776 789999999999985 599999999999864
No 377
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2e-18 Score=151.59 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.++++.++| |+++|..+..++++.+.++..+ +.+++++||+++.+..+|||+++|++|+++..|+++++
T Consensus 177 v~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 177 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 33488999999999999 9999999999999999988766 89999999999999999999999999999999987665
No 378
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.4e-19 Score=137.87 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...+++++.++++.++| ++++|..+...+++.|.++. ++.+++++||+++++..+||++++|++|+++.+|+++++.
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 33488999999999999 99999999999999998874 4689999999999999999999999999999999987653
No 379
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.70 E-value=2.5e-17 Score=144.06 Aligned_cols=178 Identities=17% Similarity=0.249 Sum_probs=109.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc-hhhh-hhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE-RFRA-VTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~-~~~~-~~~~~~~ 85 (220)
+++|+|++|+|||||++.|++.. ++..|.+.++|.++.- .+--+++.. -+.. ...+.
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~-----------~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni-- 437 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFY-----------DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNI-- 437 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc-----------CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHH--
Confidence 58999999999999999999994 4456777777754310 000011100 0000 01110
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
.+.. .+..+-+++.+.... .....+......+..+...++....+...-||++.+++++.++| ||+
T Consensus 438 ------~~~~-~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsa 510 (582)
T PRK11176 438 ------AYAR-TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510 (582)
T ss_pred ------hcCC-CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence 0000 011122333222222 11111111222222222223333333344488999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+|+.+...+++.+.+. .++.|++++||+++.+. .||+|++|++|++++.|+++++
T Consensus 511 LD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 511 LDTESERAIQAALDEL-QKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred CCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999988765 44699999999998865 5999999999999999998765
No 380
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.70 E-value=1.5e-17 Score=145.04 Aligned_cols=179 Identities=15% Similarity=0.231 Sum_probs=111.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
=+++++|++||||||+++.|.+. .++..|.+.++|.+++ +... ...+....-..+ |.. +|
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~-----------~~~~~G~I~idg~dI~----~i~~-~~lr~~I~~V~Q--d~~--LF 415 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRL-----------YDPTSGEILIDGIDIR----DISL-DSLRKRIGIVSQ--DPL--LF 415 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCEehh----hcCH-HHHHHhccEEcc--cce--ee
Confidence 47899999999999999999998 4445677777664431 1110 000000000000 111 11
Q ss_pred eCC--------Cc-ccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 95 DIT--------RR-SSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 95 d~~--------~~-~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
+.+ ++ .+.+++.+..+. +... ++..-..+.-+-..+.....+....||++++++++.++| ||
T Consensus 416 ~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l-p~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTS 494 (567)
T COG1132 416 SGTIRENIALGRPDATDEEIEEALKLANAHEFIANL-PDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATS 494 (567)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC-cccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 110 01 122333222221 2222 111222222122333333334445588999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++|..+-..+.+.+.+.. +++|.++++|+++.+.. ||+|+||++|++++.|+++++.
T Consensus 495 alD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 495 ALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred ccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHH
Confidence 999999999999888665 56788889999999887 9999999999999999998864
No 381
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-18 Score=141.61 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=67.5
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
-+++++.++++.++| +|++|..+...+.+.|.++. ++.+++++||+++.+..+||++++|++|++++.|+++++
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 377999999999999 99999999999888777654 468999999999999999999999999999999999886
No 382
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=3.1e-18 Score=133.39 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
....+++++.++++.++| ++++|..+.+.+.+.+.++..+ +.+++++||++.++..+||++++|++|++++.|++++
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 344477999999999999 9999999999999999988766 8999999999999999999999999999999998765
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 217 ~ 217 (235)
T cd03299 217 V 217 (235)
T ss_pred H
Confidence 4
No 383
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=3.6e-18 Score=132.90 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++... +++++|++|+++..|+-
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence 33477999999999999 9999999999999999988764 79999999999998875 69999999999887763
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=3.4e-17 Score=121.72 Aligned_cols=142 Identities=16% Similarity=0.182 Sum_probs=99.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++|+|+||+|||||++.|.+... +..+.+.+++..+. +.+ ..+ + ..+.+++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~-----------~~~G~i~~~g~~~~----~~~---------~~~-~--~~i~~~~q 80 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK-----------PDSGEIKVLGKDIK----KEP---------EEV-K--RRIGYLPE 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----------CCCeEEEECCEEcc----cch---------Hhh-h--ccEEEEec
Confidence 489999999999999999999842 24566777764321 000 011 1 11233333
Q ss_pred CCCcccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHH
Q 027703 96 ITRRSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVV 171 (220)
Q Consensus 96 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l 171 (220)
... -+. .+.+. +. +.....+...-+++++.++++.++| ++++|..+...+.+.+
T Consensus 81 ~~~--~~~~~tv~~~---~~-----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 138 (173)
T cd03230 81 EPS--LYENLTVREN---LK-----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 (173)
T ss_pred CCc--cccCCcHHHH---hh-----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 211 111 11111 10 3332333445577999999999999 9999999999999999
Q ss_pred HHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 172 IREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 172 ~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
.+...++.+++++||+.+++..+||++++|++|++
T Consensus 139 ~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 98877678999999999999999999999999975
No 385
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.4e-18 Score=145.98 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
..-+++++.++++.++| +|++|..+...+.+.|.++..++.+++++|||++++..+||++++|++|+++..++..+
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 33466999999999999 99999999999999999887668899999999999999999999999999998887633
No 386
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.70 E-value=3.4e-19 Score=169.45 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=77.0
Q ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccce
Q 027703 120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNR 197 (220)
Q Consensus 120 ~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~ 197 (220)
..-++.|+|+.+.. |++++.+|++.++| ++++|+.+...+++.|.++..++.+++++||+++++..+|||
T Consensus 2068 ~~~LSGGqKqRLsl--------A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2068 AGTYSGGNKRKLST--------AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred hhhCCHHHHHHHHH--------HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 33455555555443 55999999999999 999999999999999998877789999999999999999999
Q ss_pred eeeeecCCCCCCCCCcccc
Q 027703 198 VTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 198 ~~~~~~G~~~~~g~~~~~~ 216 (220)
+++|++|++++.|+++++.
T Consensus 2140 V~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2140 LAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988763
No 387
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.70 E-value=1.5e-15 Score=132.15 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=111.0
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc--CCC-----CC--------cccceeeeeEEEEEe---CCeEEEEEEEecCCcc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE--FDS-----NS--------KATIGVEFQTQVVDI---DGKEVKAQIWDTAGQE 74 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~--~~~-----~~--------~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~ 74 (220)
..-+++|+|..++|||||+.+|+... +.. .. ...+++......+.+ ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34579999999999999999997642 111 00 111222222222222 4557889999999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---
Q 027703 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL--- 151 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~--- 151 (220)
++...+..++..+|++++|+|+++....+....|.... ....|+++++||.|+.... .......+....++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 99888888999999999999999877666655543322 2357899999999986432 11122233333344
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
.++.+||+++.|+.+++++|.+.+..
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 37889999999999999999887753
No 388
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.3e-18 Score=133.84 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.+.. ++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 34488999999999999 99999999999999998874 478999999999999999999999999999999988765
No 389
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=1.1e-15 Score=129.40 Aligned_cols=158 Identities=25% Similarity=0.193 Sum_probs=105.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-----------h
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-----------V 79 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-----------~ 79 (220)
...++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++ ..+.+|||+|...... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35699999999999999999999987532 23333334443334444444 4567899999642211 1
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHH-HHHHH----hCCeEE
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK-SLAEE----EGLFFM 154 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 154 (220)
....+..+|++++|+|++++.+.+... ++..+.. ...|+++++||+|+.... ...+.. .+... ..++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence 123567899999999999887776653 2233322 247899999999986321 111211 11111 246889
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
.+||+++.|+.++++.+.+...+
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877654
No 390
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.70 E-value=4.8e-18 Score=145.98 Aligned_cols=78 Identities=10% Similarity=0.149 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-|++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 33477999999999999 9999999999999999988766889999999999999999999999999999999888763
No 391
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.3e-19 Score=138.78 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||+++++..+||++++|++|+++..|+++++.
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 33488999999999999 99999999999999998874 4789999999999999999999999999999999887653
No 392
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5.9e-19 Score=137.21 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.++++++|+++++..+||++++|++|+++..|+++++
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 44488999999999999 9999999999999999988776 89999999999999999999999999999999986654
No 393
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.70 E-value=1.3e-18 Score=150.41 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| ++++|+.+...+++.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 34477999999999999 9999999999999999988766 78999999999999999999999999999999987765
No 394
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-17 Score=138.95 Aligned_cols=177 Identities=14% Similarity=0.192 Sum_probs=109.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch--hhhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER--FRAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~--~~~~~~~~~~ 85 (220)
+++++|++|+|||||++.|.|.. .++.|.+.++|....- ++-=+++++. ......+
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~-----------~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN--- 414 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFL-----------APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN--- 414 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC-----------CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH---
Confidence 68999999999999999999984 3356778787744310 0000111100 0001111
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH--HHhhC--CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE--LTTHC--DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL 159 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~--l~~~~--~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~ 159 (220)
+.+++. ..+-+++..+.+. +.... ++.....+.-+-..++....+...-+|++..+.++.++| |+.+
T Consensus 415 -----i~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~L 487 (559)
T COG4988 415 -----ILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHL 487 (559)
T ss_pred -----hhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCC
Confidence 111111 1234444444443 11111 111221222222222222223333477888888999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 160 DSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
|-++-+.+.+.|.+..++ ++++++||+++.+.. +|+|++|++|+++++|+++++
T Consensus 488 D~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L 541 (559)
T COG4988 488 DAETEQIILQALQELAKQ-KTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEEL 541 (559)
T ss_pred CHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHH
Confidence 999988888877666555 999999999999885 999999999999999999875
No 395
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.69 E-value=4.6e-16 Score=117.18 Aligned_cols=159 Identities=22% Similarity=0.210 Sum_probs=106.5
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCC------------------cccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNS------------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~ 74 (220)
...+|+++|+.++|||||+.+|+...-.... ....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3678999999999999999999865422111 1122222233333312345688899999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-CHHHHH-HHHHHh---
Q 027703 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-STEEGK-SLAEEE--- 149 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-~~~~~~-~~~~~~--- 149 (220)
.+..........+|++++|+|+.+....... +.+..+... ..|++++.||.|+...+-. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccccc-ccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 8888777888999999999999876554432 333333332 5778999999997621100 011122 333332
Q ss_pred ---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 150 ---GLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 150 ---~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
.++++.+||+++.|+.++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 396
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.69 E-value=4.4e-18 Score=146.82 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| ++++|+.+...+++.+.++..+ +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 177 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 177 VVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH
Confidence 34477999999999999 9999999999999999988765 78999999999999999999999999999998887653
No 397
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.9e-18 Score=135.05 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 999999999999999998754 68999999999999999999999999999999987664
No 398
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.69 E-value=3.7e-17 Score=123.70 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=102.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|+||+|||||++.|.+... + .+..+.+.+++..+.- . .+ . ..+.+++.
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~---~------~~~~G~i~~~g~~~~~-----------~----~~-~--~~i~~~~q 89 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRT---G------LGVSGEVLINGRPLDK-----------R----SF-R--KIIGYVPQ 89 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---C------CCCceEEEECCEeCch-----------H----hh-h--heEEEccC
Confidence 589999999999999999999841 0 2345677777654310 0 00 0 11222322
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~ 173 (220)
.........+.+.+...... . .+.........-+++++.++++.++| ++++|..+...+++.+.+
T Consensus 90 ~~~~~~~~t~~~~i~~~~~~-~------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 90 DDILHPTLTVRETLMFAAKL-R------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred cccCCCCCcHHHHHHHHHHh-c------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 11100000111111110000 0 33333334455578999999999999 999999999999999988
Q ss_pred HHHHHhhhhhcCcchh-hhccccceeeeeecCCCCCCC
Q 027703 174 EIYSNISRKVLNSDAY-KAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 174 ~~~~~~~~~~~~h~~~-~~~~~a~~~~~~~~G~~~~~g 210 (220)
+..++.++++++|+++ ++..+||++++|++|++++.|
T Consensus 157 ~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 157 LADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 7666889999999996 788899999999999987654
No 399
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.69 E-value=1.5e-17 Score=121.07 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=111.1
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEE-EEEEecCC---------cchhhhhhHHhhcC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVK-AQIWDTAG---------QERFRAVTSAYYRG 86 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~-~~~~d~~g---------~~~~~~~~~~~~~~ 86 (220)
+.++|++|||||||++.|...+-+ ..+.+.+++.++. +.-.++|- |+.-.......+.+
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeN 99 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYEN 99 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhh
Confidence 568999999999999999998654 3455555553321 10011111 11000011122222
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHH--HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCC
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEEL--TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDST 162 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~ 162 (220)
....+-+.-....+--..+.+.+..+ ......-++.++.|.++. ...|++++.+|.+.+.| |..+|+.
T Consensus 100 VA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQR--------vaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 100 VALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQR--------VAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHH--------HHHHHHHccCCCeEeecCCCCCCChH
Confidence 22212222222111222222222221 111111233344444444 44577999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 163 NVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
.-.++++.+.++...+.|+++.|||.+.+.++..|++.+++|+++.+...
T Consensus 172 ~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 172 LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999989999999999999999999999999999999887654
No 400
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.6e-18 Score=137.65 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3477999999999999 999999999999998887754 68999999999999999999999999999999987764
No 401
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.6e-18 Score=134.81 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 33478999999999999 999999999999999987754 68999999999999999999999999999999987654
No 402
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=3.5e-18 Score=147.70 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..+++++.++++.++| ++++|..+...+++.|.++..+ +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHH
Confidence 3466999999999999 9999999999999999998876 78999999999999999999999999999999988765
No 403
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.69 E-value=7.4e-16 Score=108.96 Aligned_cols=135 Identities=25% Similarity=0.259 Sum_probs=96.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc----hhhhhhHHhhcCCcEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE----RFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~~~~i 91 (220)
||+++|+.|||||||+++|.+... .+..|+. +.+.+ .+.||||.. .+.........+++.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~-------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA-------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccce-------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999999754 2333322 22222 347899853 33444445567899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~ 170 (220)
++.|++++.+.-.- . +.... +.|++-|.+|.|+.. .....+.++.+++..++ .+|.+|+.+++|++++.++
T Consensus 69 ll~dat~~~~~~pP--~---fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFPP--G---FASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCCc--h---hhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 99999886432211 0 11111 468999999999873 34467778888888887 5788999999999999998
Q ss_pred HH
Q 027703 171 VI 172 (220)
Q Consensus 171 l~ 172 (220)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 75
No 404
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=7.1e-18 Score=129.22 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=113.7
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE------------------EEEEEEecCCcc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE------------------VKAQIWDTAGQE 74 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~------------------~~~~~~d~~g~~ 74 (220)
+.-.++++|+||+||||++++|+|...|..+ .+.++|.. ..-..||.|-.+
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-----------~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-----------KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCC-----------eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 3456899999999999999999999666443 33333310 122346666333
Q ss_pred hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHh-h--CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTT-H--CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL 151 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~ 151 (220)
.+. .... ++++.+. .|.+-...+.++.. . ...+...++.|.+.. .+-+.+++..|++
T Consensus 118 s~~-v~~~----------Iy~Ipd~-~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmr--------aeLaaaLLh~p~V 177 (325)
T COG4586 118 SLE-VLKL----------IYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMR--------AELAAALLHPPKV 177 (325)
T ss_pred hHH-HHHH----------HHhCCHH-HHHHHHHHHHHHhcchhhhhhhhhhccchHHHH--------HHHHHHhcCCCcE
Confidence 221 1111 1222221 23332222222211 1 122233344443333 3335688889999
Q ss_pred eEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 152 FFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 152 ~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
.|+| |-.+|=.-...+.+.+.+..++ +.|+++.||+++.+..+|+||++|+.|+++++|+.++
T Consensus 178 LfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~ 243 (325)
T COG4586 178 LFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQ 243 (325)
T ss_pred EEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHH
Confidence 9999 8899999999999999999877 8999999999999999999999999999999988654
No 405
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.69 E-value=2.4e-17 Score=146.65 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=108.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYY 84 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~ 84 (220)
=+++|+|++|||||||++.|++.. ++..|.+.++|.++.- .+--+++.+. + .....+.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi- 547 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFE-----------TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI- 547 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHH-
Confidence 368999999999999999999994 4456777777754321 0000111100 0 0011110
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--e
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--T 156 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~ 156 (220)
...+ +.+.+++.+..+. +... +......+.-+-..++....+...-||++.+++++.++| |
T Consensus 548 -------~~~~---~~~~e~i~~al~~a~l~~~i~~l-p~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpT 616 (686)
T TIGR03797 548 -------AGGA---PLTLDEAWEAARMAGLAEDIRAM-PMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616 (686)
T ss_pred -------hcCC---CCCHHHHHHHHHHcCcHHHHHhc-cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0111 1223333332222 1111 111111111111223333333344488999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 157 SALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|++|..+...+.+.+.+. +.|+++++|+++.+. .||+|++|++|+++++|+++++.
T Consensus 617 S~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 617 SALDNRTQAIVSESLERL---KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred cCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999988765 579999999998876 59999999999999999988753
No 406
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=1.1e-17 Score=143.78 Aligned_cols=77 Identities=13% Similarity=0.288 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|+.+...+.+.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 44477999999999999 999999999999999998876688999999999999999999999999999999987764
No 407
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.7e-18 Score=135.12 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 33477999999999999 999999999999998888754 68999999999999999999999999999999998765
No 408
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.9e-17 Score=122.39 Aligned_cols=154 Identities=20% Similarity=0.192 Sum_probs=101.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|+||+|||||++.|.+.... .+..+.+.+++..+. . .+ + ..+.+++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~---------~~~~G~i~~~g~~~~---------~-------~~-~--~~i~~~~q 86 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTA---------GVITGEILINGRPLD---------K-------NF-Q--RSTGYVEQ 86 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC---------CCcceEEEECCEehH---------H-------Hh-h--hceEEecc
Confidence 4899999999999999999987321 113466666664321 0 00 0 01122222
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~ 173 (220)
.........+.+.+...... . .++........-+++++.++++.++| ++++|..+...+++.+.+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~-~------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 87 QDVHSPNLTVREALRFSALL-R------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred cCccccCCcHHHHHHHHHHH-h------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 11100000111111110000 0 33333334455577999999999999 999999999999999988
Q ss_pred HHHHHhhhhhcCcchh-hhccccceeeeeec-CCCCCCC
Q 027703 174 EIYSNISRKVLNSDAY-KAELSVNRVTLVKD-GANSSKG 210 (220)
Q Consensus 174 ~~~~~~~~~~~~h~~~-~~~~~a~~~~~~~~-G~~~~~g 210 (220)
....+.+++++||+++ .+..+||++++|++ |++++.|
T Consensus 154 ~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 154 LADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 7666889999999998 57889999999999 9998765
No 409
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.1e-18 Score=134.68 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec-----------CC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD-----------GA 205 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~-----------G~ 205 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||+++++..+||++++|++ |+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 33477999999999999 99999999999999888774 468899999999999999999999996 56
Q ss_pred CCCCCCCcccc
Q 027703 206 NSSKGSMMDFS 216 (220)
Q Consensus 206 ~~~~g~~~~~~ 216 (220)
++++|+++++.
T Consensus 242 ~~~~~~~~~~~ 252 (269)
T PRK14259 242 LVEFNETKKIF 252 (269)
T ss_pred EEEeCCHHHHH
Confidence 89999887763
No 410
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2e-18 Score=136.42 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33488999999999999 999999999999998888754 78999999999999999999999999999999998765
No 411
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.68 E-value=9.7e-18 Score=129.90 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcch-hhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDA-YKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~-~~~~~~a~~~~~~~~G~~~~~g 210 (220)
...+++++.++++.++| ++++|..+...+.+.+.+...++.++++++|++ .++..+||++++|++|+++++|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 34478999999999999 999999999999998888766678999999999 5899999999999999998775
No 412
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.4e-18 Score=134.09 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.+... +.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 33488999999999999 999999999999999988754 78999999999999999999999999999999987765
No 413
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.8e-18 Score=136.09 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+++.|.++. ++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 99999999999999998874 468999999999999999999999999999999998765
No 414
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.3e-15 Score=123.70 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=112.5
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAY 83 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~ 83 (220)
..+|++|+|+||||||||+|+|++....-.++ +..+.+.-...+.++| +.+.+.||.|...... .....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 35899999999999999999999997665444 5556777777888887 6788899999653222 23456
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
..+||.+++++|.+.+..-.+..- +. ......|+++|.||.||........ .....+..++.+|++++.|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCccC
Confidence 789999999999988633333211 11 2345688999999999976442111 1112344688899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYSN 178 (220)
Q Consensus 164 v~~l~~~l~~~~~~~ 178 (220)
++.+.+.|.+.....
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988754
No 415
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.68 E-value=3.6e-17 Score=143.21 Aligned_cols=79 Identities=11% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703 136 DVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~ 213 (220)
.+....||++++++++.++| ||++|..+...+.+.+.+. .+++|+++++|+++.+. .||+|++|++|+++++|+.+
T Consensus 491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHH
Confidence 33444588999999999999 9999999999999877655 45799999999998876 59999999999999999988
Q ss_pred ccc
Q 027703 214 DFS 216 (220)
Q Consensus 214 ~~~ 216 (220)
++.
T Consensus 569 eL~ 571 (588)
T PRK11174 569 ELS 571 (588)
T ss_pred HHH
Confidence 763
No 416
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.68 E-value=9.8e-18 Score=144.08 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++..++.+++++|||++++..+||++++|++|+++..++..++
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 33477999999999999 999999999999999988877788999999999999999999999999999988776554
No 417
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.68 E-value=5.6e-17 Score=144.83 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=109.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc-hhh-hhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE-RFR-AVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~-~~~-~~~~~~~~ 85 (220)
+++|+|++|||||||++.|.|... +..|.+.++|.++.- .+--+++.. -+. ....+.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~-----------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi-- 573 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQ-----------PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL-- 573 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----------CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHh--
Confidence 789999999999999999999943 355677777643310 000011111 001 111111
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
..++. ..+.+++.+..+. .-...+......+.-+-..+.....+...-||++++++++.++| ||+
T Consensus 574 ------~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~ 645 (710)
T TIGR03796 574 ------TLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645 (710)
T ss_pred ------hCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcccc
Confidence 11111 1223333322222 11111111122222112223333333344488999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+|..+...+++.+.+ .+.|++++||+++.+.. ||+|++|++|+++++|+++++.
T Consensus 646 LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 646 LDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred CCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHH
Confidence 999999999998875 47999999999998765 9999999999999999988864
No 418
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.68 E-value=5.4e-17 Score=121.62 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=99.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|+||+|||||++.|.+...+ ..+.+.+++..+. ..... ...+. .+.+++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~-------~~~~~-----~~~~~--~i~~~~q 82 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVT-------RRSPR-----DAIRA--GIAYVPE 82 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECC-------ccCHH-----HHHhC--CeEEecC
Confidence 5899999999999999999998433 4566667664321 10000 01111 1233332
Q ss_pred CCC-cccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703 96 ITR-RSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV 170 (220)
Q Consensus 96 ~~~-~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~ 170 (220)
-.. ..-+. .+.+.+..... ++.|.| ....-+++++.++++.++| ++++|..+...+.+.
T Consensus 83 ~~~~~~~~~~~t~~e~l~~~~~--------LS~G~~--------qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 83 DRKREGLVLDLSVAENIALSSL--------LSGGNQ--------QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred CcccCcccCCCcHHHHHHHHhh--------cCHHHH--------HHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 110 00010 12222111100 233333 3344567999999999999 999999999999999
Q ss_pred HHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 171 VIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 171 l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
+.+...++.++++++|+++.+..+||++++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 988866678999999999999999999999999975
No 419
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.2e-18 Score=135.15 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee------cCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK------DGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~------~G~~~~~g 210 (220)
...+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||+++++..+||++++|. +|+++..|
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 34478999999999999 99999999999999888874 46899999999999999999999997 89999999
Q ss_pred CCccc
Q 027703 211 SMMDF 215 (220)
Q Consensus 211 ~~~~~ 215 (220)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14241 236 DTEKI 240 (258)
T ss_pred CHHHH
Confidence 87664
No 420
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1e-17 Score=143.61 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
...+++++.++++.++| |+++|..+..++++.+.++..++.+++++||+++++..+||++++|++|+++..++.++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 33466999999999999 99999999999999998877778999999999999999999999999999997776543
No 421
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.68 E-value=5.3e-17 Score=120.69 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=96.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|++|+|||||++.|.+... +..+.+.+++..+. +.+ . . .+ +. .+.+++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~-----------~~~G~i~~~g~~~~----~~~---~-~----~~-~~--~i~~~~q 83 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR-----------PTSGRVRLDGADIS----QWD---P-N----EL-GD--HVGYLPQ 83 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC-----------CCCCeEEECCEEcc----cCC---H-H----HH-Hh--heEEECC
Confidence 489999999999999999999843 34566667664321 111 0 0 01 11 1223322
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~ 173 (220)
- ..-+.. ...+.+ ++.|++ +...-+++++.++++.++| ++++|..+...+.+.+.+
T Consensus 84 ~--~~~~~~--tv~~~l----------LS~G~~--------qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 84 D--DELFSG--SIAENI----------LSGGQR--------QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred C--CccccC--cHHHHC----------cCHHHH--------HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 1 111110 111111 222333 3344577999999999999 999999999999999988
Q ss_pred HHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
+..++.+++++||+++.+. +||++++|++|++
T Consensus 142 ~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 142 LKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred HHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 8766889999999999885 7999999999975
No 422
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=8.1e-17 Score=137.87 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=108.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-------EEEecCCcch---hhhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-------QIWDTAGQER---FRAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-------~~~d~~g~~~---~~~~~~~~~~ 85 (220)
.+|++||+|+||||+.+.|... +++..|.+.++|..++- .-.-+.||++ ......+..
T Consensus 496 ~vALVGPSGsGKSTiasLL~rf-----------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~- 563 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRF-----------YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA- 563 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh-
Confidence 6899999999999999999998 44466777777754310 0011112221 011112211
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHH------HHHHhhCC-------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWL------EELTTHCD-------TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF 152 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~------~~l~~~~~-------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (220)
|-.+ ..+.+++...- ..+....+ ++-..++.|.|+. .+.||+++++|.+.
T Consensus 564 ------YG~~---~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR--------IAIARALlr~P~VL 626 (716)
T KOG0058|consen 564 ------YGLD---NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR--------IAIARALLRNPRVL 626 (716)
T ss_pred ------cCCC---CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH--------HHHHHHHhcCCCEE
Confidence 1111 23333333221 11222211 1122344444444 45566999999999
Q ss_pred EEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 153 FME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 153 ~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
++| |||+|-++-..+-+. ++.+.++.|++++.|.+..++ .||+|+|+++|++++.|+.+|+
T Consensus 627 ILDEATSALDaeSE~lVq~a-L~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 627 ILDEATSALDAESEYLVQEA-LDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred EEechhhhcchhhHHHHHHH-HHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeEEecccHHHH
Confidence 999 999999996665554 445555699999999999987 5999999999999999988775
No 423
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=123.87 Aligned_cols=151 Identities=17% Similarity=0.088 Sum_probs=108.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhh---------hhhHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------AVTSAYY 84 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~ 84 (220)
..|+|+|.||||||||+|+|.+....-..+ |.++.++..+...+.+.. +.+.||+|..... .......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 579999999999999999999997665444 666777777888887754 7889999976322 1233466
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
..||+++||+|.....+-.+ +.+..+.. ....|++++.||+|-.. ..+.+.++.+----.++.+||..+.|+
T Consensus 82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr--~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPAD--EEIAKILR--RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 88999999999976444333 23333322 23579999999999431 122233333323337888999999999
Q ss_pred HHHHHHHHHHH
Q 027703 165 EAAFEVVIREI 175 (220)
Q Consensus 165 ~~l~~~l~~~~ 175 (220)
.++++.+.+.+
T Consensus 154 ~dLld~v~~~l 164 (444)
T COG1160 154 GDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHhhc
Confidence 99999999886
No 424
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.4e-18 Score=135.37 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+++.|.+... +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 34477999999999999 999999999999998888754 68999999999999999999999999999999988765
No 425
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=6.1e-18 Score=145.98 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33477999999999999 9999999999999999988776 89999999999999999999999999999999987664
No 426
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.1e-18 Score=135.55 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 33478999999999999 999999999999999998754 68999999999999999999999999999999987664
No 427
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.67 E-value=6.9e-17 Score=126.85 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCc
Q 027703 137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~ 213 (220)
.....+++++.+|++.++| ++++|..+...+.+.+.++...+.+++++||+++.+... +|++++|++|+++..|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 3344588999999999999 999999999999998887765578999999999999887 8999999999999999875
No 428
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=1.4e-16 Score=126.45 Aligned_cols=78 Identities=6% Similarity=0.112 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...-+++++.++++.++| ++++|......+.+.|.+. ..+.++++++|+++.+.. |||+++|++|++++.|+++++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL 223 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHH
Confidence 344488999999999999 9999999999999988865 347899999999998875 999999999999999999887
Q ss_pred cc
Q 027703 216 SC 217 (220)
Q Consensus 216 ~~ 217 (220)
..
T Consensus 224 ~~ 225 (275)
T cd03289 224 LN 225 (275)
T ss_pred hh
Confidence 54
No 429
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.7e-18 Score=134.28 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+++.+.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 99999999999999998874 468999999999999999999999999999999987664
No 430
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.8e-18 Score=134.83 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33478999999999999 999999999999998888754 58999999999999999999999999999999987654
No 431
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.6e-17 Score=133.98 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=114.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcchhhhhhHHhhcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~~~~~~~~~~~~ 86 (220)
=||+|+|+|||||||+++.|+.. .+ +.|.+.++|.+++- .+--.|+... .+....+.+
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF-----------~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~--LFndTIl~N 444 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRF-----------FD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV--LFNDTILYN 444 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----------hc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc--ccchhHHHH
Confidence 48999999999999999999987 44 57888888865421 0001111100 000011111
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHH------HHhhC-------CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeE
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEE------LTTHC-------DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFF 153 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~-------~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (220)
.. ..+...+++++.+.-+. +.... .+.-..+++|.||.++. +|++++++++.+
T Consensus 445 I~------YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsl--------aRa~lKda~Il~ 510 (591)
T KOG0057|consen 445 IK------YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSL--------ARAFLKDAPILL 510 (591)
T ss_pred hh------cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHH--------HHHHhcCCCeEE
Confidence 00 01112344443322111 22111 12233456666666554 559999999999
Q ss_pred EE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 154 ME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 154 ~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
+| ||++|-+.-.++++.+.. ...++|++++-|++..++. +|+|+++++|++.+.|+.+++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred ecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHh
Confidence 99 999999999999999888 6678999999999999885 9999999999999999987754
No 432
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.7e-18 Score=134.17 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++ .++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 34477999999999999 9999999999999999987 4578999999999999999999999999999999988765
No 433
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.67 E-value=1.8e-15 Score=127.48 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=100.6
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhC--cCCC-----------------------------CCcccceeeeeEEEEEe
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARN--EFDS-----------------------------NSKATIGVEFQTQVVDI 58 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~i~~ 58 (220)
...++++|+++|..++|||||+.+|+.. .+.. +...+.+.+... ..+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~ 80 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKF 80 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEE
Confidence 3567799999999999999999999852 1111 111233333333 334
Q ss_pred CCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHH--HHHhhCCCCCcEEEEEecCCCCCCCC
Q 027703 59 DGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLE--ELTTHCDTAVGRMLVGNKCDLDSIRD 136 (220)
Q Consensus 59 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~v~~k~Dl~~~~~ 136 (220)
......+.+||+||+..+.......+..+|++++|+|+++..++... .+.. .+.... ...++++++||.|+.....
T Consensus 81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL-GINQLIVAINKMDSVNYDE 158 (426)
T ss_pred ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc-CCCeEEEEEEChhccCccH
Confidence 44457889999999887765555566889999999999887533211 1111 122221 2357888999999864222
Q ss_pred CC----HHHHHHHHHHhC-----CeEEEeccCCCCCHHHHH
Q 027703 137 VS----TEEGKSLAEEEG-----LFFMETSALDSTNVEAAF 168 (220)
Q Consensus 137 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~ 168 (220)
.. ..+...++...+ ++++++||+++.|+.+.+
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11 234555555543 578999999999998643
No 434
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=1.9e-17 Score=122.93 Aligned_cols=172 Identities=17% Similarity=0.252 Sum_probs=108.4
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDI 96 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 96 (220)
|.|+|.||+|||||+|.|.|. ..+..+.+.+++.++.- |-.. .-......+++++-+-- +-+.
T Consensus 35 vtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk--~~~~---~RA~~larVfQdp~~gt-~~~l 97 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTK--KSVA---KRANLLARVFQDPLAGT-APEL 97 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceeccc--CCHH---HHhhHHHHHhcchhhCC-cccc
Confidence 789999999999999999998 55567888888865521 0000 00111112222221100 0000
Q ss_pred CCc--------------ccH---HHHHHHHHH--------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703 97 TRR--------------SSF---DSVKRWLEE--------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL 151 (220)
Q Consensus 97 ~~~--------------~~~---~~~~~~~~~--------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~ 151 (220)
+-+ -++ .....++.+ +......++..++.|.++-+.-.. +.+..|++
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M--------Atl~~pki 169 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM--------ATLHPPKI 169 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH--------HhcCCCcE
Confidence 000 000 011111111 122222334444455544443322 55667888
Q ss_pred eEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703 152 FFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 152 ~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~ 213 (220)
.++| |.|+||.-...+++.-.+.+.+ +.|.+|+||++..|..|.+|.++|++|+|+.+-..+
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 9999 9999999999999999999987 789999999999999999999999999999876543
No 435
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.67 E-value=4.9e-18 Score=130.24 Aligned_cols=76 Identities=8% Similarity=-0.015 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|+.+...+.+.+.+... +.+++++||++..+..+||++++|++|+++..|+.++.
T Consensus 113 v~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 113 LAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 34477999999999998 899999999999888876654 46799999999999999999999999999999887654
No 436
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6e-17 Score=134.44 Aligned_cols=174 Identities=18% Similarity=0.283 Sum_probs=109.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecC----------Cc-chhhhhhHHh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA----------GQ-ERFRAVTSAY 83 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~----------g~-~~~~~~~~~~ 83 (220)
=||+|+|++|||||||++.+.+.. ++.+|.++.++..+. -++.. +. .-|.....+.
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~-----------~~~~G~i~~~g~~~~--~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAW-----------DPQQGSITLNGVEIA--SLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHhcc-----------CCCCCeeeECCcChh--hCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 489999999999999999999984 445666777664332 11110 00 0011111111
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHH-HHHHHhhCC--------CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEE
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRW-LEELTTHCD--------TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFM 154 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~l~~~~~--------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
++-+ .-|++|++-.+.++.. +.++....+ +.-.-++.|.++.+ ..+|.+.++.++-++
T Consensus 432 L~lA-----~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL--------AlAR~LL~dapl~lL 498 (573)
T COG4987 432 LRLA-----NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL--------ALARALLHDAPLWLL 498 (573)
T ss_pred Hhhc-----CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH--------HHHHHHHcCCCeEEe
Confidence 1111 1133444333333210 111111111 11111233333332 236688888888899
Q ss_pred E--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 155 E--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 155 ~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
| |.++|+..-.++++.+.+..+ ++|++++||++.... .+|||+||++|+++++|+++++.
T Consensus 499 DEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred cCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHh-hcCEEEEEECCeeeecCCHHhhh
Confidence 8 999999999999997776655 799999999999977 59999999999999999998765
No 437
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.6e-18 Score=128.70 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=115.3
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecC---CcchhhhhhHHhh
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA---GQERFRAVTSAYY 84 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~---g~~~~~~~~~~~~ 84 (220)
++..++.=+.+|+|+||||||||++.+++..++..+..+. . +...-.+. .. ||.. |... ......+.
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~----~-G~~~G~~~-~~---~elrk~IG~vS-~~L~~~~~ 120 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL----L-GRRFGKGE-TI---FELRKRIGLVS-SELHERFR 120 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceee----e-eeeccCCc-ch---HHHHHHhCccC-HHHHhhcc
Confidence 3445555689999999999999999999997775433111 1 11111111 00 2222 1110 00111111
Q ss_pred ----------cCCcEEEEEEe-CCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC
Q 027703 85 ----------RGAVGALVVYD-ITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL 151 (220)
Q Consensus 85 ----------~~~~~~i~v~d-~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~ 151 (220)
....+.+-+|- ..+...+..+..+++.+. ...+.....++.|.|+- .-.+|+++.+|.+
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr--------vLiaRALv~~P~L 192 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR--------VLIARALVKDPEL 192 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH--------HHHHHHHhcCCCE
Confidence 11111122222 122333444433333322 22222222233333333 3337799999999
Q ss_pred eEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703 152 FFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS 211 (220)
Q Consensus 152 ~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~ 211 (220)
.++| ++++|..+.+.+++.+.++... ..+++++||..+++....+++.++++|+++.+|.
T Consensus 193 LiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 193 LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999 9999999999999999999987 7889999999999999999999999999999885
No 438
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=3.2e-15 Score=129.25 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCccccee--eeeEEEEEe--------------CCeEEEEEEEecCCcchhhhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGV--EFQTQVVDI--------------DGKEVKAQIWDTAGQERFRAV 79 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~--~~~~~~i~~--------------~~~~~~~~~~d~~g~~~~~~~ 79 (220)
-|+++|.+++|||||+++|.+..+......+++. ......... ......+.+|||||+..+...
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 5999999999999999999998765443321111 111111110 000113789999999998888
Q ss_pred hHHhhcCCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC----CH--------HH---
Q 027703 80 TSAYYRGAVGALVVYDITRR---SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV----ST--------EE--- 141 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~----~~--------~~--- 141 (220)
+...+..+|++++|+|+++. ++++.+. .+. ....|+++++||+|+...... .. +.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 88888999999999999874 3343332 222 235789999999998531100 00 00
Q ss_pred ---------HHHHHH--------------HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 142 ---------GKSLAE--------------EEGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 142 ---------~~~~~~--------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
...+.. ...++++.+||++++|+.++++++..+..
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 001111 11467889999999999999998876554
No 439
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.67 E-value=9.1e-17 Score=143.41 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=109.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~~ 85 (220)
+++|+|++|||||||++.|.+.. ++..|.+.++|.++.- .+--+++.+. + .....+..
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~-----------~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~- 569 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF-----------QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLL- 569 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC-----------CCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHh-
Confidence 68999999999999999999984 3456777777743210 0000111110 0 11111110
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
... ....+.+++.+.... +-...+......+.-+-..+.....+...-||++.+++++.++| ||+
T Consensus 570 -------l~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 570 -------LGA-KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred -------ccC-CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 000 011223333322222 11111111111221122333333334444588999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+|..+.+.+.+.+.+. .+.|+++++|+++.+. .||++++|++|+++++|+.+++
T Consensus 642 LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 642 LDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred CCHHHHHHHHHHHHHh--cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHH
Confidence 9999999999988763 5789999999999865 6999999999999999998775
No 440
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=4.6e-17 Score=146.62 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=110.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC-------
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA------- 87 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~------- 87 (220)
-.++++|++||||||+++.|.+. +++..|.+.++|.+++- .+.+. .+....-+.+.+
T Consensus 380 ~~valVG~SGsGKST~i~LL~Rf-----------ydP~~G~V~idG~di~~--~~~~~---lr~~iglV~QePvlF~~tI 443 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARF-----------YDPTSGEVLIDGEDIRN--LNLKW---LRSQIGLVSQEPVLFATTI 443 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh-----------cCCCCceEEEcCccchh--cchHH---HHhhcCeeeechhhhcccH
Confidence 35899999999999999999998 45567778787755421 11110 000000000000
Q ss_pred -cEEEE-EEeCCCcccHHHHH-----HHHHHHHh----hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE-
Q 027703 88 -VGALV-VYDITRRSSFDSVK-----RWLEELTT----HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME- 155 (220)
Q Consensus 88 -~~~i~-v~d~~~~~~~~~~~-----~~~~~l~~----~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 155 (220)
+-+.+ --|++..+..+..+ ..+..+.. ...+.-+.++.|.|+.+ ..|++++++|++.++|
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRI--------AIARalv~~P~ILLLDE 515 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRI--------AIARALVRNPKILLLDE 515 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHH--------HHHHHHHhCCCEEEecC
Confidence 00000 00122211111111 11111111 11122333555555554 4466999999999999
Q ss_pred -eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 156 -TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 156 -~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|||+|.++-. +.+.+++....+.|-++++|++..+.. ||+|++|++|+|++.|+++|+.
T Consensus 516 aTSaLD~~se~-~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 516 ATSALDAESER-VVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred cccccCHHHHH-HHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHH
Confidence 9999999955 455566788888899999999999886 9999999999999999998863
No 441
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.2e-17 Score=141.91 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
..-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++++..+||++++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 34477999999999999 999999999999999998866688999999999999999999999999999877653
No 442
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=7.6e-17 Score=120.36 Aligned_cols=146 Identities=24% Similarity=0.324 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++|+|+||+|||||++.|.+.. .+..+.+.+++..+. +.+. . ...+ . ..+.+++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~-----------~~~~G~i~~~g~~~~----~~~~--~----~~~~-~--~~i~~~~q 83 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE-----------EPDSGSILIDGEDLT----DLED--E----LPPL-R--RRIGMVFQ 83 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEcc----ccch--h----HHHH-h--hcEEEEec
Confidence 58899999999999999999983 234567777764321 0000 0 0011 1 12233332
Q ss_pred CCCcccHH--HHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHH
Q 027703 96 ITRRSSFD--SVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVV 171 (220)
Q Consensus 96 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l 171 (220)
.. ..+. .+.+. +. .. ++.|.|+ ...-+++++.++++.++| ++++|..+...+++.+
T Consensus 84 ~~--~~~~~~t~~~~---l~------~~-lS~G~~q--------r~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l 143 (178)
T cd03229 84 DF--ALFPHLTVLEN---IA------LG-LSGGQQQ--------RVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143 (178)
T ss_pred CC--ccCCCCCHHHh---ee------ec-CCHHHHH--------HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 21 1111 11110 00 00 2223333 344477999999999999 9999999999999999
Q ss_pred HHHHHH-HhhhhhcCcchhhhccccceeeeeecCC
Q 027703 172 IREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGA 205 (220)
Q Consensus 172 ~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~ 205 (220)
.++..+ +.+++++||+++++..+||++++|++|+
T Consensus 144 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 988877 7899999999999999999999999985
No 443
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.67 E-value=5.9e-17 Score=144.31 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=109.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~~ 85 (220)
+++|+|++|||||||++.|.+... +..|.+.++|.++.- .+--+++... + .....+. .
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~-----------p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi-~ 560 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQ-----------PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI-A 560 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----------CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH-h
Confidence 689999999999999999999943 355677777643210 0001111110 0 1111111 0
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
..+. ..+.+++.+.... +... +......+.-.-..+.....+...-||++.+++++.++| ||
T Consensus 561 -------~~~~--~~~~~~i~~a~~~~~l~~~i~~l-p~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 561 -------LGAP--YADDEEILRAAELAGVTEFVRRH-PDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred -------CCCC--CCCHHHHHHHHHHcChHHHHHhC-cccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1110 1223333332222 1111 111111221111223333333344488999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++|..+...+.+.+.+.. ++.|+++++|+++.+. .||+|++|++|++++.|+++++.
T Consensus 631 ~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999877654 4799999999999864 79999999999999999988763
No 444
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5e-18 Score=135.79 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.-+++++.++++.++| ++++|..+...+++.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3377999999999999 999999999999998887754 57899999999999999999999999999999987664
No 445
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=9.6e-18 Score=132.80 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee---------cCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK---------DGANS 207 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~---------~G~~~ 207 (220)
..-+++++.++++.++| ++++|..+...+++.+.++.. +.+++++||+++.+..+||++++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 34478999999999999 999999999999998888765 5899999999999999999999999 89999
Q ss_pred CCCCCcccc
Q 027703 208 SKGSMMDFS 216 (220)
Q Consensus 208 ~~g~~~~~~ 216 (220)
..|+++++.
T Consensus 239 ~~~~~~~~~ 247 (264)
T PRK14243 239 EFDRTEKIF 247 (264)
T ss_pred EeCCHHHHH
Confidence 999987763
No 446
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.6e-18 Score=133.93 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeec-----CCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKD-----GANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~-----G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+++.+.++... +.+++++||++.++..+||++++|++ |+++.+|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 34488999999999999 9999999999999999987654 79999999999999999999999999 9999999
Q ss_pred CCccc
Q 027703 211 SMMDF 215 (220)
Q Consensus 211 ~~~~~ 215 (220)
+++++
T Consensus 239 ~~~~~ 243 (261)
T PRK14258 239 LTKKI 243 (261)
T ss_pred CHHHH
Confidence 98775
No 447
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.5e-18 Score=133.12 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee--------cCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK--------DGANSS 208 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~--------~G~~~~ 208 (220)
..-+++++.++++.++| ++++|..+..++++.+.++. ++.+++++||+++.+..+||++++|+ +|+++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 33488999999999999 99999999999999998874 46899999999999999999999996 899999
Q ss_pred CCCCccc
Q 027703 209 KGSMMDF 215 (220)
Q Consensus 209 ~g~~~~~ 215 (220)
.|+++++
T Consensus 237 ~g~~~~~ 243 (261)
T PRK14263 237 MGPTAQI 243 (261)
T ss_pred eCCHHHH
Confidence 9998765
No 448
>PLN03211 ABC transporter G-25; Provisional
Probab=99.66 E-value=3.4e-18 Score=150.32 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=74.4
Q ss_pred CCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchh-hhccccceeeeeecCCCC
Q 027703 131 LDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAY-KAELSVNRVTLVKDGANS 207 (220)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~-~~~~~a~~~~~~~~G~~~ 207 (220)
+..........+++++.++++.++| +|++|..+..++.+.+.++..++.++++++|+++ .+..++|++++|++|+++
T Consensus 207 LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred cChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 4444444555688999999999999 9999999999999999988777899999999998 588999999999999999
Q ss_pred CCCCCccc
Q 027703 208 SKGSMMDF 215 (220)
Q Consensus 208 ~~g~~~~~ 215 (220)
+.|+++++
T Consensus 287 ~~G~~~~~ 294 (659)
T PLN03211 287 FFGKGSDA 294 (659)
T ss_pred EECCHHHH
Confidence 99998775
No 449
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.66 E-value=1.3e-16 Score=114.96 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=88.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++|+|+||+|||||++.|.+...+ ..+.+.+++.. .+.+++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~--------------------------~i~~~~~ 70 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTV--------------------------KIGYFEQ 70 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeE--------------------------EEEEEcc
Confidence 4799999999999999999998432 45666665520 1111111
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~ 173 (220)
++........-+++++.++++.++| ++++|..+...+.+.+.+
T Consensus 71 -----------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 71 -----------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred -----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 2222233344467999999999999 999999999999998876
Q ss_pred HHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703 174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGA 205 (220)
Q Consensus 174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~ 205 (220)
+ +.+++++||+++++..+||++++|++|+
T Consensus 116 ~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 116 Y---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred c---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 5 4789999999999999999999999985
No 450
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.8e-18 Score=132.86 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.-+++++.++++.++| ++++|..+...+.+.+.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3378999999999999 99999999999999888775 468999999999999999999999999999999987764
No 451
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.66 E-value=1.4e-17 Score=126.53 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhcc-ccceeeeeecCCCCCCCCC
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAEL-SVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~-~a~~~~~~~~G~~~~~g~~ 212 (220)
...-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||++..+.. +||++++|++|+++..|..
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 344477999999999999 99999999999999999876667899999999999887 7999999999999999844
No 452
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.66 E-value=2e-17 Score=129.15 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|+.+...+.+.|.++. ++.+++++||+++++. +||++++|++|+++..|+++++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 99999999999999998876 6789999999999997 8999999999999999887654
No 453
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.8e-16 Score=123.37 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...-+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 344488999999999999 99999999999999998775 47899999999999976 999999999999999987664
No 454
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.1e-18 Score=135.21 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceee-eeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVT-LVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~-~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++++..+||+++ +|++|+++..|.++++
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 33477999999999999 999999999999999888865 4799999999999999999975 6799999999886653
No 455
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.8e-18 Score=133.55 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++. ++.+++++||+++.+..+||++++|++|+++.+|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 34488999999999999 99999999999999888774 478999999999999999999999999999999987664
No 456
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.66 E-value=4e-18 Score=132.98 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||+++++. .||++++|++|+++..|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHH
Confidence 34488999999999999 99999999999999998875 4789999999999986 5999999999999999987664
No 457
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.5e-17 Score=130.89 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=67.6
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
-+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 377999999999999 999999999999998887754 58999999999999999999999999999999987664
No 458
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.65 E-value=2.6e-18 Score=163.52 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..+++++.++++.++| +|++|+.+...+++.|.++ .++.+++++||+++++..+|||+++|++|++++.|+++++
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 3377999999999999 9999999999999999887 4588999999999999999999999999999999998765
No 459
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.4e-18 Score=132.41 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 44488999999999999 999999999999998888754 58999999999999999999999999999999987664
No 460
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4e-18 Score=134.08 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 99999999999999888774 478999999999999999999999999999999987665
No 461
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.1e-18 Score=134.66 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=68.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..+++++.++++.++| ++++|..+...+++.+.++.. +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3488999999999999 999999999999998887765 58999999999999999999999999999999987765
No 462
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.7e-17 Score=130.55 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++ .++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 33478999999999999 9999999999999988877 4578999999999999999999999999999999988764
No 463
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.65 E-value=2.7e-16 Score=123.75 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..++.+++++||+++.+... ||++++|++|+++..|+++..
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 44477999999999999 999999999999999998876689999999999999876 899999999999999998643
No 464
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.1e-17 Score=133.15 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee---------cCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK---------DGANS 207 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~---------~G~~~ 207 (220)
...+++++.++++.++| ++++|..+...+.+.|.++.. +.++++++|+++.+..+||++++|+ +|+++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 33488999999999999 999999999999999998854 6899999999999999999999998 89999
Q ss_pred CCCCCcccc
Q 027703 208 SKGSMMDFS 216 (220)
Q Consensus 208 ~~g~~~~~~ 216 (220)
..|+++++.
T Consensus 249 ~~g~~~~~~ 257 (274)
T PRK14265 249 EFSPTEQMF 257 (274)
T ss_pred EeCCHHHHH
Confidence 999988764
No 465
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=7.4e-17 Score=122.81 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=99.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++|+|+||+|||||++.|.+...+. .+..+.+.+++..+. .. . .. .. ..+.+++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~--------~~~~G~i~i~g~~~~----~~---~------~~-~~--~~i~~~~q 90 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGN--------VSVEGDIHYNGIPYK----EF---A------EK-YP--GEIIYVSE 90 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCC--------CCcceEEEECCEECc----cc---h------hh-hc--ceEEEEec
Confidence 68999999999999999999984310 024566777664321 00 0 00 01 11223332
Q ss_pred CCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVI 172 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~ 172 (220)
-........+.+++...... ..... .++..........+++++.++++.++| ++++|......+++.+.
T Consensus 91 ~~~~~~~~tv~~~l~~~~~~~~~~~~--------~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 91 EDVHFPTLTVRETLDFALRCKGNEFV--------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR 162 (202)
T ss_pred ccccCCCCcHHHHHhhhhhhccccch--------hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 11100001122222111000 11111 122222223344477999999999999 99999999999999999
Q ss_pred HHHHH-Hhhhhh-cCcchhhhccccceeeeeecCCCCCCC
Q 027703 173 REIYS-NISRKV-LNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 173 ~~~~~-~~~~~~-~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
++..+ +.++++ ++|+.+.+..+||++++|++|+++..|
T Consensus 163 ~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 88766 556555 456678889999999999999987654
No 466
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.65 E-value=1.8e-16 Score=141.15 Aligned_cols=177 Identities=15% Similarity=0.188 Sum_probs=110.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc-hh-hhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE-RF-RAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~-~~-~~~~~~~~~ 85 (220)
+++|+|++|+|||||++.|.+.. ++..|.+.++|.++.- .+.-+++.. -+ .....+. .
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~-----------~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi-~ 552 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLY-----------TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI-A 552 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-----------CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH-h
Confidence 78999999999999999999994 3356777777754320 000011110 00 0011111 0
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH-----HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ecc
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE-----LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSA 158 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa 158 (220)
..+ ...+.+.+.+..+. +....+......+.-+-..++....+...-++++++++++.++| ||+
T Consensus 553 -------~~~--~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~ 623 (694)
T TIGR01846 553 -------LCN--PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSA 623 (694)
T ss_pred -------cCC--CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 011 11223333332222 11111111222222112233333333444488999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 159 LDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+|..+...+.+.+.+. ..+.|++++||+++.+.. ||++++|++|+++++|+++++
T Consensus 624 LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 624 LDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred CCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999988776 457899999999999864 999999999999999998775
No 467
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.5e-17 Score=139.48 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=106.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-EEEEEEecC-CcchhhhhhHHhhcCCcEEEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-VKAQIWDTA-GQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-~~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.++++|+||||||||++.|.|...+ ..|.+.+++.. +.+..-+.. ...........+ ..
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~-~~------- 407 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENANIGYYAQDHAYDFENDLTLFDWM-SQ------- 407 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEcccccccCCCCCcHHHHH-HH-------
Confidence 5799999999999999999998533 34455454421 111110100 000001111111 10
Q ss_pred EeCCCcccHHHHHHHHHHHH---hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELT---THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAF 168 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~ 168 (220)
+.. .......+..++..+. ......+.-++.|.|+.+ .-+++++.++++.++| ++++|..+...+.
T Consensus 408 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv--------~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 478 (530)
T PRK15064 408 WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM--------LFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478 (530)
T ss_pred hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHH--------HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 000 1112233344444431 111222333444444443 3366999999999999 9999999999999
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC-CCCCCccc
Q 027703 169 EVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS-SKGSMMDF 215 (220)
Q Consensus 169 ~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~-~~g~~~~~ 215 (220)
+.+.+. +.+++++|||++++..+||++++|++|+++ ..|++.++
T Consensus 479 ~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 479 MALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 988765 458999999999999999999999999997 88887664
No 468
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=8.7e-17 Score=125.84 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDG 204 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G 204 (220)
...+++++.++++.++| ++++|..+...+.+.|.++..+ +.+++++||+++.+..+||++++|+++
T Consensus 124 v~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 124 VAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 34477999999999999 9999999999999999988775 799999999999999999999999654
No 469
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.65 E-value=1.2e-16 Score=122.14 Aligned_cols=73 Identities=8% Similarity=0.092 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
...-+++++.++++.++| ++++|......+.+.+.++. ++.+++++||+++.+.. +|++++|++|+++..|++
T Consensus 133 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 344488999999999999 99999999999999888874 47899999999999876 999999999999988864
No 470
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2e-17 Score=130.03 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.-+++++.++++.++| ++++|..+...+.+.|.++. ++.+++++||++.++..+++++++|++|+++.+|+++++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 3478999999999999 99999999999999888774 478999999999999999999999999999999998765
No 471
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.1e-17 Score=133.08 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 34488999999999999 999999999999999998865 68999999999999999999999999999999987654
No 472
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8e-18 Score=132.45 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.|.++.. +.+++++||+++.+..+||++++|++|+++..|++.++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 999999999999999988754 58999999999999999999999999999999987654
No 473
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.64 E-value=2.3e-16 Score=138.28 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
+...-||++++++++.++| +|++|..+...+.+.+.+.. .+.|++++||+++... .||+|++|++|++++.|++++
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHH
Confidence 3344488999999999999 99999999999999887654 4689999999998866 599999999999999999877
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 561 L 561 (592)
T PRK10790 561 L 561 (592)
T ss_pred H
Confidence 5
No 474
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.64 E-value=1.1e-16 Score=123.46 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..-+++++.++++.++| ++++|..+...+.+.|.++..+ .+++++||+++.. .+||++++|++|+++..|
T Consensus 149 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 149 VALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 44488999999999999 9999999999999999887654 8999999999986 699999999999987654
No 475
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.5e-17 Score=118.61 Aligned_cols=180 Identities=18% Similarity=0.238 Sum_probs=115.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-EEEEEEecCCcch---hhhhhHHhh-cCCcEEE
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE-VKAQIWDTAGQER---FRAVTSAYY-RGAVGAL 91 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~-~~~~~~d~~g~~~---~~~~~~~~~-~~~~~~i 91 (220)
++|+|++|||||||+++|.+.-.++. +.+.+.... -...++.....++ .+..|-... +-.|++-
T Consensus 35 LgiVGESGSGKtTLL~~is~rl~p~~-----------G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLR 103 (258)
T COG4107 35 LGIVGESGSGKTTLLKCISGRLTPDA-----------GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLR 103 (258)
T ss_pred EEEEecCCCcHHhHHHHHhcccCCCC-----------CeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccce
Confidence 78999999999999999999865543 333331110 0111111111110 011111111 2234433
Q ss_pred EEEeCC--------------CcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEE
Q 027703 92 VVYDIT--------------RRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFM 154 (220)
Q Consensus 92 ~v~d~~--------------~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (220)
+-+++- ...-......|+++++... +..+..++.|.++.+ ..|+.+...|++.|+
T Consensus 104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL--------QiARnLVt~PrLvfM 175 (258)
T COG4107 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL--------QIARNLVTRPRLVFM 175 (258)
T ss_pred eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH--------HHHHHhccCCceEEe
Confidence 322221 1112233456766654321 122333444444443 446699999999999
Q ss_pred E--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 155 E--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 155 ~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
| |.++|-.-...+++.+..+..+ +.+++++|||+..+...|+|..+|++|+++++|-.+.+
T Consensus 176 DEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 9 9999999999999999999987 89999999999999999999999999999999987665
No 476
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.64 E-value=2.1e-16 Score=137.13 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 137 VSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
+...-++++.+++++.++| +|++|..+.+.+.+.+.+...++.++++++|+++.+ ..||++++|++|++++.|++++
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHH
Confidence 3344488999999999999 999999999999998887765678999999999975 5799999999999999999876
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 540 l 540 (544)
T TIGR01842 540 V 540 (544)
T ss_pred H
Confidence 5
No 477
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.64 E-value=1.9e-16 Score=141.21 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...-||++.+++++.++| ||++|..+.+.+.+ . ....++|+++++|+++.+. .||+|++|++|+++++|+++++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~--~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE-S--RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h--hccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHH
Confidence 344488999999999999 99999988777777 2 2235789999999999875 5999999999999999998875
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 701 ~ 701 (711)
T TIGR00958 701 M 701 (711)
T ss_pred H
Confidence 3
No 478
>PRK10218 GTP-binding protein; Provisional
Probab=99.64 E-value=2.4e-14 Score=124.25 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=110.7
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhh--CcCCCCC------------cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFAR--NEFDSNS------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA 78 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~--~~~~~~~------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~ 78 (220)
...+|+|+|..++|||||+++|+. ..+...+ +.+.+.........+..+...+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356899999999999999999997 3333321 12233333344444445568899999999999998
Q ss_pred hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHH-------hC
Q 027703 79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS-TEEGKSLAEE-------EG 150 (220)
Q Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~-~~~~~~~~~~-------~~ 150 (220)
.+..+++.+|++++|+|+.+....+.. .++..+.. ...|.+++.||.|+..++... .++...+... .+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 899999999999999999875444332 23333322 357888999999987543211 2233444322 34
Q ss_pred CeEEEeccCCCC----------CHHHHHHHHHHHHH
Q 027703 151 LFFMETSALDST----------NVEAAFEVVIREIY 176 (220)
Q Consensus 151 ~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 176 (220)
++++.+||+++. ++..+++.+.+.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 678899999998 57888887777664
No 479
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.64 E-value=3.5e-14 Score=110.45 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCC--------------CCC--cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFD--------------SNS--KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV 79 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~--------------~~~--~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~ 79 (220)
+|+++|..|+|||||+++|+...-. +.. +...+.........+..+..++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999764211 000 001111112222223334468899999999988888
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
....++.+|++++|+|+.+..... ...++..+.. ...|+++++||.|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccccC
Confidence 888999999999999998865543 3344454433 2578899999999864
No 480
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.64 E-value=2.1e-16 Score=138.32 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCc
Q 027703 136 DVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~ 213 (220)
.+...-||++++++++.++| +|++|+.+...+++.+.+. .++++++++||+++.+. .||++++|++|++++.|+.+
T Consensus 477 ~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 477 RQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHH
Confidence 33344588999999999999 9999999999999988765 35799999999998865 69999999999999999977
Q ss_pred cc
Q 027703 214 DF 215 (220)
Q Consensus 214 ~~ 215 (220)
++
T Consensus 555 ~l 556 (588)
T PRK13657 555 EL 556 (588)
T ss_pred HH
Confidence 65
No 481
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=7.4e-15 Score=122.88 Aligned_cols=164 Identities=22% Similarity=0.202 Sum_probs=100.9
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEEEEe--------------C------C----eE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQVVDI--------------D------G----KE 62 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~i~~--------------~------~----~~ 62 (220)
.+.+.++|+++|..++|||||+.+|.+..... +.....+.........+ . + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 45667999999999999999999997642111 11111111111000000 0 0 12
Q ss_pred EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CH
Q 027703 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--ST 139 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~ 139 (220)
..+.+||+||+..+......-...+|++++|+|++++. ..+.. +.+..+... ...|+++++||.|+...... ..
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57889999998877654444556679999999998643 22221 122222221 12367889999998643221 12
Q ss_pred HHHHHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 140 EEGKSLAEE---EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
++...++.. ...+++.+||+++.|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 233344332 2468899999999999999999887653
No 482
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.63 E-value=1.6e-16 Score=138.64 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
....+|++++++++.++| ||++|..+...+.+.+.+.. ++.++++++|+++.+. .||++++|++|++++.|+.+++
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeCCHHHH
Confidence 344488999999999999 99999999999999887664 5789999999999976 5999999999999999998775
No 483
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.63 E-value=2.4e-16 Score=117.71 Aligned_cols=147 Identities=17% Similarity=0.241 Sum_probs=97.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++++|+||+|||||++.|.+...+ ..+.+.+++..+ . .. ....+. .+-+++.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~-------~---~~----~~~~~~--~i~~~~q 82 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPV-------S---DL----EKALSS--LISVLNQ 82 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEH-------H---HH----HHHHHh--hEEEEcc
Confidence 5899999999999999999998433 345666666421 1 00 001111 1223332
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~ 173 (220)
. +.-+. . .....+ -..+.....+...-+++++.++++.++| ++++|..+.+.+++.+.+
T Consensus 83 ~--~~~~~-~-tv~~~i---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 83 R--PYLFD-T-TLRNNL---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred C--Ceeec-c-cHHHhh---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 1 11110 0 111111 1122222233344577999999999999 999999999999999987
Q ss_pred HHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 174 EIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 174 ~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
+. ++.+++++||+++++. .||++++|++|+++++|
T Consensus 144 ~~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 144 VL-KDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred Hc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 74 4789999999999986 69999999999988764
No 484
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.63 E-value=1.4e-16 Score=114.33 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=110.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE----------------EEEEEEecCCcchhhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE----------------VKAQIWDTAGQERFRA 78 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~----------------~~~~~~d~~g~~~~~~ 78 (220)
=.++|+||+|||||||+-.+.+.+.+. .+.+.+.+.. +-+.|--.--.+.
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~s-----------sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~--- 102 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPS-----------SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN--- 102 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCC-----------CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc---
Confidence 358999999999999999999996554 4444443322 1111100000000
Q ss_pred hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE-
Q 027703 79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME- 155 (220)
Q Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 155 (220)
...+.+...-+.+-.-....++....+|+..+. .+....+..++.|.+ +.+..+++++..|++.|.|
T Consensus 103 --ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQ--------QRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 103 --LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQ--------QRVALARAFAGRPDVLFADE 172 (228)
T ss_pred --chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHH--------HHHHHHHHhcCCCCEEeccC
Confidence 011111111111111123456767777777643 222222333444433 3455577999999999999
Q ss_pred -eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703 156 -TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSK 209 (220)
Q Consensus 156 -~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~ 209 (220)
|..+|...-+++.+.+-.+..+ +.|.+++|||...+.+ |+|.+.|++|+++.+
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 9999999999999999999887 8999999999999886 999999999998764
No 485
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.4e-17 Score=129.19 Aligned_cols=75 Identities=9% Similarity=0.251 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++. ++.+++++||++..+. .||++++|++|+++..|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence 44488999999999999 99999999999999998874 5889999999999986 5999999999999998886654
No 486
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=3.1e-16 Score=122.22 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+++++.+|++.++| ++++|..+...+.+.|.++.. +.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHH
Confidence 33488999999999999 999999999999999988766 8899999999999965 999999999999998887654
No 487
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=7.9e-15 Score=122.72 Aligned_cols=162 Identities=22% Similarity=0.187 Sum_probs=102.1
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEE--------------EEe----CC------eEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQV--------------VDI----DG------KEVK 64 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~--------------i~~----~~------~~~~ 64 (220)
.+.++|+++|..++|||||+++|.+..... +.....+....... ++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467999999999999999999997642211 10111111110000 000 00 1357
Q ss_pred EEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHH
Q 027703 65 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEG 142 (220)
Q Consensus 65 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~ 142 (220)
+.+||+||+..+..........+|++++|+|+++........+.+..+... ...|+++++||.|+...... ..++.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 889999999988777777778899999999998643111112222222222 12467889999998642211 12333
Q ss_pred HHHHHHh---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 143 KSLAEEE---GLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 143 ~~~~~~~---~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
..+.... +++++.+||+++.|+.+++++|.+.+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3444332 56899999999999999999998754
No 488
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.63 E-value=5.8e-16 Score=135.28 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..-+|++++++++.++| +|++|..+.+.+.+.|.+. .++++++++||+.... ..||++++|++|++++.|+.+++
T Consensus 478 iaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHH
Confidence 34488999999999999 9999999999999988765 4579999999999885 56999999999999999998775
No 489
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.6e-17 Score=130.04 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee-----cCCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK-----DGANSSKGS 211 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~-----~G~~~~~g~ 211 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|+ +|+++..|+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 33488999999999999 999999999999999988754 5899999999999999999999998 599999999
Q ss_pred Cccc
Q 027703 212 MMDF 215 (220)
Q Consensus 212 ~~~~ 215 (220)
++++
T Consensus 238 ~~~~ 241 (259)
T PRK14260 238 TTQI 241 (259)
T ss_pred HHHH
Confidence 8765
No 490
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.4e-17 Score=129.77 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++..+||++++|++|+++.+|+++++
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 44488999999999999 999999999999998887754 68999999999999999999999999999999987654
No 491
>PLN03232 ABC transporter C family member; Provisional
Probab=99.62 E-value=4.7e-16 Score=147.59 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=107.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcch-h-hhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQER-F-RAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~~-~-~~~~~~~~~ 85 (220)
|++|+|++|||||||++.|.+.. ++..|.+.++|.++.- .+--+|+.+. + .....+
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~-----------~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N--- 1329 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIV-----------ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN--- 1329 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-----------cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH---
Confidence 79999999999999999999983 4456778888754320 0000111100 0 000111
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHH------HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEE------LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
. |..+..+-+++.+.++. +... +......+.-+-..+.....+....||++++++++.++| ||
T Consensus 1330 -L-------~~~~~~sdeei~~al~~a~l~~~I~~l-p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232 1330 -I-------DPFSEHNDADLWEALERAHIKDVIDRN-PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred -c-------CCCCCCCHHHHHHHHHHcCCHHHHHhC-cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 0 11111223333222222 1111 111111111111122222223334488999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++|..+-..+.+.|.+. .++.|+++++|+++.+.. ||+|+||++|++++.|+++++.
T Consensus 1401 aLD~~Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1401 SVDVRTDSLIQRTIREE-FKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred cCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 99999877777666544 457999999999999875 9999999999999999998864
No 492
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=1.1e-14 Score=122.84 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=96.5
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-------------------------------CCcccceeeeeEEEEEeC
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-------------------------------NSKATIGVEFQTQVVDID 59 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~ 59 (220)
..++++|+++|..++|||||+++|+...-.. +..+..+.+.... .+.
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~ 80 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFE 80 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEe
Confidence 3467999999999999999999998432110 1122223333333 333
Q ss_pred CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-
Q 027703 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV- 137 (220)
Q Consensus 60 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~- 137 (220)
.+...+.+|||||+.++..........+|++++|+|+++...+.. ..+++..+... ...|+++++||.|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHH
Confidence 345788999999987765544445678999999999987311111 11222222222 22468889999998642211
Q ss_pred ---CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHH
Q 027703 138 ---STEEGKSLAEEEG-----LFFMETSALDSTNVEAAF 168 (220)
Q Consensus 138 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~ 168 (220)
..++...++...+ ++++.+||+++.|+.+..
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1233444554443 578999999999998754
No 493
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=7.6e-17 Score=141.83 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC-CCCCCccc
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS-SKGSMMDF 215 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~-~~g~~~~~ 215 (220)
-+++++.++++.++| |+.+|..+...+.+.|.++ +.+++++|||++++..+||++++|++|+++ ..|++++.
T Consensus 441 La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 366999999999999 9999999999999988876 358999999999999999999999999987 78877654
No 494
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.62 E-value=2.6e-16 Score=123.70 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 138 STEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
...-+++++.++++.++| ++++|..+...+++.+.++..++.+++++||+++.+..+||++++| +|+++++|-.
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~~~ 222 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYGVV 222 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcceee
Confidence 344588999999999999 9999999999999988887766889999999999999999999999 5778876643
No 495
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.62 E-value=3.9e-16 Score=120.79 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeee-ecCCCCCCCCCc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLV-KDGANSSKGSMM 213 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~-~~G~~~~~g~~~ 213 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++..+ +.+++++||+++++. +||++++| +|+..+.+|+.+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhhc
Confidence 33488999999999999 9999999999999999988776 789999999999986 69999999 577788888763
No 496
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.9e-16 Score=116.01 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=109.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRGAV 88 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 88 (220)
-++++||+|||||||+|.+.|...| ..+.+.+++..+ .-||.++ -..-|.+...+..
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i-----~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRI-----EGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEec-----cCCCccceeEeccCccchhhHHHHHHH
Confidence 4889999999999999999999444 456666666532 1222211 0111222211111
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNV 164 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v 164 (220)
..+-..-+...+..+...+.+..+. ....+.+.-++.|.++. ...+++++-+|.+.++| .+|+|--..
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR--------vGiARALa~eP~~LlLDEPfgAlDa~tR 168 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR--------VGIARALAVEPQLLLLDEPFGALDALTR 168 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH--------HHHHHHhhcCcceEeecCchhhHHHHHH
Confidence 1111112222233333333333322 12222233344444444 45567999999999999 999999999
Q ss_pred HHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeec--CCCCCCCCC
Q 027703 165 EAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSM 212 (220)
Q Consensus 165 ~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~ 212 (220)
+++-+.+..+-.. ++.++++||++++|.-.|+|++||.- |+|+..-++
T Consensus 169 e~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 169 EQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999988888766 89999999999999999999999984 556655444
No 497
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=2.8e-16 Score=112.44 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=107.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc------
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV------ 88 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~------ 88 (220)
=.+++.||+|||||||++.+... +++..+++.+.|+.+. +.+.+.++.......+..+
T Consensus 30 e~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs-----~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVS-----TLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCcccc-----ccChHHHHHHHHHHHcCccccccch
Confidence 46899999999999999999999 5556788888887653 4444444443333333332
Q ss_pred --EEEEEEeCCCcc-cHHHHHHHHHHHHh---hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703 89 --GALVVYDITRRS-SFDSVKRWLEELTT---HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD 160 (220)
Q Consensus 89 --~~i~v~d~~~~~-~~~~~~~~~~~l~~---~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 160 (220)
-++|-+-..+.. .-......+..+.. ...+++.-++.|.|+.. .-++.+.--|++.++| |||+|
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri--------AliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI--------ALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH--------HHHHHhhcCCceEEecCchhhcC
Confidence 122222221111 11111111111110 00122222333333332 2244566667888998 99999
Q ss_pred CCCHHHHHHHHHHHH-HHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 161 STNVEAAFEVVIREI-YSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~-~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
..|-..+-+.|.++. .++..++-+|||.+.+.+.|++++-+-.|++
T Consensus 166 ~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 166 ESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999 5589999999999999999999999999865
No 498
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.61 E-value=1.7e-14 Score=110.29 Aligned_cols=147 Identities=21% Similarity=0.190 Sum_probs=91.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCC-------------------------------CcccceeeeeEEEEEeCCeEEE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSN-------------------------------SKATIGVEFQTQVVDIDGKEVK 64 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~i~~~~~~~~ 64 (220)
+|+|+|.+|+|||||+++|+...-... ..+..+.+.....+... ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 589999999999999999976432111 00222232223333333 357
Q ss_pred EEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC----HH
Q 027703 65 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS----TE 140 (220)
Q Consensus 65 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~----~~ 140 (220)
+.+|||||+..+.......+..+|++++|+|+++...-... ..+..+... ...+++++.||.|+....... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 78999999987766556667899999999999875432221 222222221 124567789999985422111 12
Q ss_pred HHHHHHHHhC---CeEEEeccCCCCCHHHH
Q 027703 141 EGKSLAEEEG---LFFMETSALDSTNVEAA 167 (220)
Q Consensus 141 ~~~~~~~~~~---~~~~~~Sa~~~~~v~~l 167 (220)
+...+....+ .+++.+||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3444444444 45889999999998753
No 499
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.61 E-value=1.5e-16 Score=122.77 Aligned_cols=72 Identities=8% Similarity=0.085 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
..-+++++.++++.++| ++++|..+...+.+.+.++.. +.+++++||+++++.. ||++++|++|+++..|++
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDSP 221 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCCC
Confidence 34488999999999999 999999999999998887754 5889999999999875 999999999999988763
No 500
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.61 E-value=2.2e-14 Score=124.49 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=107.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC--cCCCCC--------------cccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN--EFDSNS--------------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV 79 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~--~~~~~~--------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~ 79 (220)
+|+|+|..++|||||+.+|+.. .+.... ...+++......+.+ +...+.+|||||+.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~--~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY--NGTKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE--CCEEEEEEECCCHHHHHHH
Confidence 6999999999999999999863 232211 122233333333444 3478889999999999888
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHH-------HhCC
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS-TEEGKSLAE-------EEGL 151 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~-~~~~~~~~~-------~~~~ 151 (220)
...+++.+|++++|+|+.+.. ......++..+.. ...|.++++||.|+...+... ..+...+.. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 889999999999999998743 3333455555443 257889999999986533211 223333332 1346
Q ss_pred eEEEeccCCCC----------CHHHHHHHHHHHHH
Q 027703 152 FFMETSALDST----------NVEAAFEVVIREIY 176 (220)
Q Consensus 152 ~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 176 (220)
+++.+||+++. ++..+|+.+.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 78899999995 79999998887764
Done!