Query 027703
Match_columns 220
No_of_seqs 115 out of 2270
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 23:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.4E-35 1.2E-39 224.6 19.6 168 10-177 9-176 (216)
2 3tkl_A RAS-related protein RAB 100.0 1.2E-30 4E-35 196.1 24.6 173 6-178 8-180 (196)
3 2ew1_A RAS-related protein RAB 100.0 5.4E-31 1.9E-35 199.5 22.6 172 7-178 19-190 (201)
4 2hup_A RAS-related protein RAB 100.0 6.9E-31 2.4E-35 198.8 21.7 171 8-178 23-194 (201)
5 2bme_A RAB4A, RAS-related prot 100.0 1.8E-30 6.2E-35 193.6 23.2 172 7-178 3-174 (186)
6 2fu5_C RAS-related protein RAB 100.0 4.2E-31 1.4E-35 196.6 19.2 170 10-179 4-173 (183)
7 1z0f_A RAB14, member RAS oncog 100.0 1.5E-30 5.3E-35 192.5 22.1 170 7-176 8-177 (179)
8 2a5j_A RAS-related protein RAB 100.0 2E-30 6.8E-35 194.6 22.9 171 8-178 15-185 (191)
9 2oil_A CATX-8, RAS-related pro 100.0 3E-30 1E-34 193.8 23.4 171 8-178 19-189 (193)
10 2gf9_A RAS-related protein RAB 100.0 3.6E-30 1.2E-34 192.7 23.4 173 6-178 14-186 (189)
11 3tw8_B RAS-related protein RAB 100.0 2.7E-30 9.3E-35 191.4 22.3 172 7-179 2-173 (181)
12 2efe_B Small GTP-binding prote 100.0 5.6E-30 1.9E-34 190.0 23.6 171 6-176 4-174 (181)
13 1r2q_A RAS-related protein RAB 100.0 3.9E-30 1.3E-34 188.7 22.2 166 10-175 2-167 (170)
14 2bcg_Y Protein YP2, GTP-bindin 100.0 4.3E-30 1.5E-34 194.9 23.1 169 10-178 4-172 (206)
15 1zbd_A Rabphilin-3A; G protein 100.0 1.2E-29 4E-34 192.0 23.9 170 10-179 4-173 (203)
16 3kkq_A RAS-related protein M-R 100.0 8E-30 2.7E-34 189.7 22.4 171 6-177 10-182 (183)
17 1z08_A RAS-related protein RAB 100.0 1.8E-30 6E-35 190.7 18.6 166 11-176 3-168 (170)
18 1z0j_A RAB-22, RAS-related pro 100.0 1.4E-29 4.9E-34 185.7 23.3 165 11-175 3-167 (170)
19 3dz8_A RAS-related protein RAB 100.0 5.3E-31 1.8E-35 197.7 15.8 171 8-178 17-187 (191)
20 2il1_A RAB12; G-protein, GDP, 100.0 3E-30 1E-34 193.8 19.8 170 8-177 20-190 (192)
21 2y8e_A RAB-protein 6, GH09086P 100.0 8.1E-30 2.8E-34 188.6 21.2 168 8-175 8-175 (179)
22 2fg5_A RAB-22B, RAS-related pr 100.0 9E-30 3.1E-34 191.2 21.6 171 6-176 15-185 (192)
23 2f9l_A RAB11B, member RAS onco 100.0 1.6E-29 5.5E-34 190.9 22.9 167 12-178 3-169 (199)
24 2o52_A RAS-related protein RAB 100.0 5.4E-30 1.8E-34 193.7 20.1 170 9-178 20-189 (200)
25 1oix_A RAS-related protein RAB 100.0 1.2E-29 4E-34 190.6 21.6 166 10-175 25-190 (191)
26 1ek0_A Protein (GTP-binding pr 100.0 2E-29 6.9E-34 184.8 22.4 163 13-175 2-167 (170)
27 2g6b_A RAS-related protein RAB 100.0 1.9E-29 6.5E-34 187.0 22.4 170 8-177 4-174 (180)
28 2bov_A RAla, RAS-related prote 100.0 2.4E-29 8.2E-34 190.4 23.0 177 1-178 1-178 (206)
29 3cpj_B GTP-binding protein YPT 100.0 6.6E-30 2.2E-34 196.4 20.0 168 10-177 9-176 (223)
30 3cbq_A GTP-binding protein REM 100.0 5.9E-30 2E-34 192.8 19.3 169 9-177 18-188 (195)
31 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.3E-29 1.1E-33 185.1 22.9 167 10-177 3-174 (177)
32 1g16_A RAS-related protein SEC 100.0 1.2E-29 4.1E-34 186.1 20.2 164 13-177 2-165 (170)
33 2fn4_A P23, RAS-related protei 100.0 2.2E-29 7.5E-34 186.6 21.6 169 8-177 3-172 (181)
34 1z2a_A RAS-related protein RAB 100.0 1.1E-29 3.7E-34 186.0 19.4 164 12-176 3-166 (168)
35 1x3s_A RAS-related protein RAB 100.0 4.2E-29 1.4E-33 187.4 22.7 172 5-177 6-178 (195)
36 3bc1_A RAS-related protein RAB 100.0 6.4E-29 2.2E-33 186.0 23.6 169 10-178 7-186 (195)
37 1z06_A RAS-related protein RAB 100.0 2.2E-29 7.7E-34 188.4 20.7 165 12-176 18-187 (189)
38 3cph_A RAS-related protein SEC 100.0 3.3E-29 1.1E-33 190.7 21.8 171 7-178 13-183 (213)
39 2hxs_A RAB-26, RAS-related pro 100.0 9.2E-30 3.1E-34 188.3 18.2 167 11-177 3-173 (178)
40 2p5s_A RAS and EF-hand domain 100.0 9.5E-30 3.2E-34 192.1 18.4 169 8-176 22-196 (199)
41 3q85_A GTP-binding protein REM 100.0 1.6E-29 5.6E-34 185.5 19.2 164 14-177 2-167 (169)
42 3t5g_A GTP-binding protein RHE 100.0 2.7E-29 9.4E-34 186.5 20.5 166 11-177 3-169 (181)
43 3q3j_B RHO-related GTP-binding 100.0 1.8E-29 6.2E-34 192.8 19.7 172 4-177 17-203 (214)
44 3c5c_A RAS-like protein 12; GD 100.0 2E-29 6.9E-34 188.6 19.0 165 10-176 17-185 (187)
45 3ihw_A Centg3; RAS, centaurin, 100.0 7.8E-29 2.7E-33 185.0 22.0 164 8-178 14-181 (184)
46 3reg_A RHO-like small GTPase; 100.0 8.1E-29 2.8E-33 186.1 21.7 171 5-177 14-188 (194)
47 1vg8_A RAS-related protein RAB 100.0 6.1E-29 2.1E-33 188.4 20.8 168 10-178 4-176 (207)
48 2f7s_A C25KG, RAS-related prot 100.0 3.1E-29 1.1E-33 191.6 19.3 173 8-180 19-202 (217)
49 1ky3_A GTP-binding protein YPT 100.0 3.4E-29 1.2E-33 185.7 18.8 168 10-177 4-178 (182)
50 2nzj_A GTP-binding protein REM 100.0 1.2E-28 4E-33 181.8 21.4 164 13-177 3-169 (175)
51 2a9k_A RAS-related protein RAL 100.0 1.3E-28 4.5E-33 183.3 21.6 170 8-178 12-182 (187)
52 1u8z_A RAS-related protein RAL 100.0 1.4E-28 4.8E-33 179.8 20.7 162 14-176 4-166 (168)
53 2atx_A Small GTP binding prote 100.0 2E-28 6.8E-33 183.9 21.9 166 9-176 13-192 (194)
54 3clv_A RAB5 protein, putative; 100.0 3.1E-28 1E-32 183.7 22.8 164 12-178 5-205 (208)
55 1c1y_A RAS-related protein RAP 100.0 2E-28 6.8E-33 179.1 20.5 161 14-175 3-165 (167)
56 3oes_A GTPase rhebl1; small GT 100.0 6.3E-29 2.2E-33 187.9 18.1 165 12-177 22-187 (201)
57 2g3y_A GTP-binding protein GEM 100.0 2E-28 6.9E-33 186.6 20.8 167 10-177 33-203 (211)
58 3q72_A GTP-binding protein RAD 100.0 1.4E-28 4.9E-33 179.9 19.2 162 14-177 2-164 (166)
59 2atv_A RERG, RAS-like estrogen 100.0 2.3E-28 7.7E-33 184.0 20.8 165 12-178 26-192 (196)
60 1kao_A RAP2A; GTP-binding prot 100.0 1.9E-28 6.6E-33 178.9 19.7 162 14-176 3-165 (167)
61 2q3h_A RAS homolog gene family 100.0 2.4E-28 8.1E-33 184.5 20.7 171 6-178 12-196 (201)
62 2iwr_A Centaurin gamma 1; ANK 100.0 3.3E-28 1.1E-32 180.1 20.9 159 12-177 5-169 (178)
63 2yc2_C IFT27, small RAB-relate 100.0 4.1E-29 1.4E-33 189.3 15.9 167 12-178 18-193 (208)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 2.3E-28 7.9E-33 182.2 18.6 165 10-176 3-182 (184)
65 4dsu_A GTPase KRAS, isoform 2B 100.0 1.9E-27 6.4E-32 177.4 23.4 165 13-179 3-168 (189)
66 1gwn_A RHO-related GTP-binding 100.0 2.9E-28 9.9E-33 185.0 18.9 168 8-177 22-204 (205)
67 4djt_A GTP-binding nuclear pro 100.0 7.4E-29 2.5E-33 189.6 14.8 174 9-182 6-180 (218)
68 2gco_A H9, RHO-related GTP-bin 100.0 1.3E-27 4.4E-32 180.7 20.8 168 7-176 18-199 (201)
69 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.1E-27 7E-32 176.7 20.4 162 13-176 4-179 (186)
70 3l0i_B RAS-related protein RAB 100.0 1.8E-30 6.1E-35 196.1 3.5 169 8-176 27-195 (199)
71 2j1l_A RHO-related GTP-binding 100.0 9.7E-28 3.3E-32 183.2 18.7 164 12-177 32-209 (214)
72 2erx_A GTP-binding protein DI- 100.0 1.9E-27 6.4E-32 174.6 19.5 162 14-176 3-166 (172)
73 3con_A GTPase NRAS; structural 100.0 6.2E-27 2.1E-31 175.1 22.5 164 12-177 19-183 (190)
74 3t1o_A Gliding protein MGLA; G 100.0 4.8E-28 1.7E-32 181.8 16.2 167 8-178 8-193 (198)
75 2ce2_X GTPase HRAS; signaling 100.0 6.4E-27 2.2E-31 170.5 21.6 161 14-176 3-164 (166)
76 2gf0_A GTP-binding protein DI- 100.0 2E-27 6.7E-32 178.9 19.3 164 11-176 5-170 (199)
77 2cjw_A GTP-binding protein GEM 100.0 3.8E-27 1.3E-31 177.0 20.2 165 12-177 4-172 (192)
78 2j0v_A RAC-like GTP-binding pr 100.0 1E-27 3.4E-32 182.6 17.0 164 12-177 7-180 (212)
79 2fv8_A H6, RHO-related GTP-bin 100.0 9.8E-27 3.3E-31 176.6 20.9 164 12-177 23-200 (207)
80 4gzl_A RAS-related C3 botulinu 100.0 1.9E-27 6.6E-32 180.2 16.8 163 10-174 26-202 (204)
81 3gj0_A GTP-binding nuclear pro 100.0 1.1E-27 3.7E-32 183.6 14.3 171 7-180 8-178 (221)
82 3bwd_D RAC-like GTP-binding pr 100.0 6.4E-28 2.2E-32 179.0 12.3 161 13-175 7-179 (182)
83 4bas_A ADP-ribosylation factor 100.0 2.4E-27 8.1E-32 178.4 14.6 165 7-177 10-189 (199)
84 1zd9_A ADP-ribosylation factor 99.9 3.8E-26 1.3E-30 170.8 16.9 158 13-176 21-184 (188)
85 1f6b_A SAR1; gtpases, N-termin 99.9 1.9E-26 6.5E-31 174.0 15.3 154 14-174 25-196 (198)
86 1m2o_B GTP-binding protein SAR 99.9 5.4E-26 1.8E-30 170.4 17.3 155 13-174 22-189 (190)
87 2h57_A ADP-ribosylation factor 99.9 7.2E-26 2.5E-30 169.4 17.5 160 12-177 19-187 (190)
88 1r8s_A ADP-ribosylation factor 99.9 9.7E-27 3.3E-31 169.8 12.1 156 15-177 1-162 (164)
89 1ksh_A ARF-like protein 2; sma 99.9 2.1E-25 7.1E-30 166.2 19.3 160 12-178 16-181 (186)
90 1upt_A ARL1, ADP-ribosylation 99.9 3.7E-26 1.3E-30 167.7 14.9 158 13-177 6-169 (171)
91 1fzq_A ADP-ribosylation factor 99.9 1.4E-25 4.7E-30 166.8 16.8 160 11-177 13-178 (181)
92 2h17_A ADP-ribosylation factor 99.9 8.7E-26 3E-30 167.8 14.9 158 10-174 17-180 (181)
93 1zj6_A ADP-ribosylation factor 99.9 2.3E-25 7.8E-30 166.3 17.1 157 13-176 15-177 (187)
94 2zej_A Dardarin, leucine-rich 99.9 1.6E-26 5.5E-31 172.3 9.7 162 14-176 2-177 (184)
95 3llu_A RAS-related GTP-binding 99.9 2.8E-26 9.5E-31 172.7 10.5 165 6-175 12-195 (196)
96 2b6h_A ADP-ribosylation factor 99.9 2.7E-26 9.1E-31 172.3 10.2 158 12-176 27-190 (192)
97 2wkq_A NPH1-1, RAS-related C3 99.9 1.3E-24 4.4E-29 175.9 20.0 161 14-176 155-329 (332)
98 1moz_A ARL1, ADP-ribosylation 99.9 3.9E-25 1.3E-29 164.1 15.4 159 12-177 16-180 (183)
99 2wji_A Ferrous iron transport 99.9 7.2E-25 2.5E-29 160.6 15.5 153 14-175 3-163 (165)
100 3th5_A RAS-related C3 botulinu 99.9 1.2E-27 4.2E-32 181.1 0.0 163 11-175 27-203 (204)
101 2x77_A ADP-ribosylation factor 99.9 9.2E-26 3.1E-30 168.6 10.1 158 13-177 21-184 (189)
102 3c5h_A Glucocorticoid receptor 99.9 7.4E-26 2.5E-30 177.3 7.5 169 6-176 11-254 (255)
103 2fh5_B SR-beta, signal recogni 99.9 7.6E-25 2.6E-29 166.8 11.8 159 11-174 4-213 (214)
104 2qu8_A Putative nucleolar GTP- 99.9 1.2E-23 4E-28 162.0 18.4 168 8-178 23-206 (228)
105 2wjg_A FEOB, ferrous iron tran 99.9 6.6E-24 2.3E-28 158.2 13.6 156 13-177 6-169 (188)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 1.3E-23 4.5E-28 168.7 15.9 159 13-175 2-179 (307)
107 2lkc_A Translation initiation 99.9 1.1E-23 3.7E-28 155.6 13.9 158 11-177 5-171 (178)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 8.9E-25 3E-29 174.7 6.8 155 16-177 1-174 (331)
109 2gj8_A MNME, tRNA modification 99.9 6.4E-24 2.2E-28 156.6 10.7 154 13-176 3-165 (172)
110 3lvq_E ARF-GAP with SH3 domain 99.9 5.7E-23 1.9E-27 175.2 17.3 166 12-184 320-491 (497)
111 3o47_A ADP-ribosylation factor 99.9 9.2E-23 3.2E-27 165.2 16.0 157 14-177 165-327 (329)
112 2cxx_A Probable GTP-binding pr 99.9 2.4E-23 8.3E-28 155.2 11.3 154 15-177 2-184 (190)
113 1svi_A GTP-binding protein YSX 99.9 6.9E-23 2.3E-27 153.5 13.3 158 11-175 20-193 (195)
114 2dyk_A GTP-binding protein; GT 99.9 1.4E-22 4.9E-27 147.0 14.1 149 15-174 2-159 (161)
115 3iev_A GTP-binding protein ERA 99.9 3.7E-22 1.3E-26 160.3 17.1 164 9-176 5-181 (308)
116 3k53_A Ferrous iron transport 99.9 4E-23 1.4E-27 163.1 11.3 184 14-205 3-195 (271)
117 3a1s_A Iron(II) transport prot 99.9 2.2E-22 7.5E-27 157.7 14.2 156 12-176 3-166 (258)
118 3dpu_A RAB family protein; roc 99.9 6.4E-23 2.2E-27 176.3 10.1 163 11-177 38-208 (535)
119 3b1v_A Ferrous iron uptake tra 99.9 1.3E-22 4.5E-27 159.9 10.3 153 14-176 3-163 (272)
120 3pqc_A Probable GTP-binding pr 99.9 1.6E-21 5.3E-26 145.8 14.3 158 10-177 19-194 (195)
121 3iby_A Ferrous iron transport 99.9 2.4E-22 8.2E-27 157.2 9.4 151 15-174 2-164 (256)
122 1nrj_B SR-beta, signal recogni 99.9 4.2E-22 1.5E-26 152.0 7.3 144 11-163 9-170 (218)
123 3gfo_A Cobalt import ATP-bindi 99.9 4E-25 1.4E-29 174.2 -10.3 78 139-216 152-232 (275)
124 3fvq_A Fe(3+) IONS import ATP- 99.9 1.2E-23 4.1E-28 170.7 -2.0 177 17-216 33-227 (359)
125 2e87_A Hypothetical protein PH 99.9 2.5E-20 8.5E-25 152.6 17.2 162 12-178 165-337 (357)
126 3i8s_A Ferrous iron transport 99.9 1.1E-21 3.7E-26 155.1 8.8 154 14-176 3-168 (274)
127 3tui_C Methionine import ATP-b 99.8 1E-23 3.6E-28 171.2 -4.3 77 139-215 172-251 (366)
128 4dhe_A Probable GTP-binding pr 99.8 5.9E-21 2E-25 146.0 11.2 161 11-177 26-211 (223)
129 1wf3_A GTP-binding protein; GT 99.8 5.8E-20 2E-24 146.9 16.4 155 13-176 6-172 (301)
130 3rlf_A Maltose/maltodextrin im 99.8 2.3E-23 7.9E-28 170.2 -3.7 77 139-215 142-221 (381)
131 4g1u_C Hemin import ATP-bindin 99.8 2.7E-23 9.1E-28 163.3 -3.9 78 139-216 150-236 (266)
132 3gee_A MNME, tRNA modification 99.8 3.1E-20 1.1E-24 156.7 14.3 156 14-176 233-397 (476)
133 2hjg_A GTP-binding protein ENG 99.8 3.6E-20 1.2E-24 155.4 14.1 160 12-177 173-349 (436)
134 3qq5_A Small GTP-binding prote 99.8 5.4E-21 1.9E-25 158.9 7.9 158 11-177 31-196 (423)
135 1v43_A Sugar-binding transport 99.8 2.4E-22 8.1E-27 164.2 -0.3 176 16-215 39-229 (372)
136 2qtf_A Protein HFLX, GTP-bindi 99.8 1.9E-19 6.3E-24 147.3 16.7 160 15-177 180-354 (364)
137 1oxx_K GLCV, glucose, ABC tran 99.8 1.4E-22 4.7E-27 164.9 -2.7 77 139-215 149-228 (353)
138 4dcu_A GTP-binding protein ENG 99.8 1.2E-19 4.2E-24 153.0 14.7 161 11-177 192-369 (456)
139 2ihy_A ABC transporter, ATP-bi 99.8 1.8E-22 6.1E-27 159.5 -3.0 77 139-215 170-250 (279)
140 1lnz_A SPO0B-associated GTP-bi 99.8 4.2E-20 1.4E-24 149.8 10.6 158 15-177 159-330 (342)
141 3lxx_A GTPase IMAP family memb 99.8 3.6E-19 1.2E-23 137.8 15.2 165 10-178 25-215 (239)
142 1xzp_A Probable tRNA modificat 99.8 1.7E-19 5.8E-24 152.3 14.4 153 14-177 243-405 (482)
143 1ji0_A ABC transporter; ATP bi 99.8 3.5E-22 1.2E-26 154.8 -2.0 77 139-215 148-226 (240)
144 1z47_A CYSA, putative ABC-tran 99.8 1.3E-22 4.4E-27 164.7 -4.7 77 139-215 154-233 (355)
145 2olj_A Amino acid ABC transpor 99.8 1.1E-22 3.9E-27 159.3 -4.9 76 140-215 169-246 (263)
146 1g29_1 MALK, maltose transport 99.8 2E-22 6.9E-27 164.9 -3.6 77 139-215 148-227 (372)
147 2yyz_A Sugar ABC transporter, 99.8 1.9E-22 6.4E-27 164.1 -4.0 77 139-215 142-221 (359)
148 1g6h_A High-affinity branched- 99.8 3.8E-22 1.3E-26 156.2 -2.2 76 139-214 162-239 (257)
149 1b0u_A Histidine permease; ABC 99.8 2.3E-22 8E-27 157.7 -3.6 76 140-215 163-240 (262)
150 3tif_A Uncharacterized ABC tra 99.8 6.7E-22 2.3E-26 152.7 -1.0 76 140-216 155-233 (235)
151 2onk_A Molybdate/tungstate ABC 99.8 1.7E-22 6E-27 156.3 -4.4 76 140-215 136-214 (240)
152 2yz2_A Putative ABC transporte 99.8 3.4E-22 1.2E-26 157.1 -3.1 176 16-215 35-225 (266)
153 2it1_A 362AA long hypothetical 99.8 1.7E-22 5.7E-27 164.6 -5.0 77 139-215 142-221 (362)
154 1vpl_A ABC transporter, ATP-bi 99.8 1.5E-22 5.1E-27 158.1 -6.1 76 140-215 156-233 (256)
155 1mky_A Probable GTP-binding pr 99.8 8.9E-19 3E-23 147.1 16.3 173 12-191 178-368 (439)
156 1mky_A Probable GTP-binding pr 99.8 1E-18 3.5E-23 146.7 16.2 153 15-177 2-166 (439)
157 2xtp_A GTPase IMAP family memb 99.8 3E-19 1E-23 139.9 12.1 170 10-183 18-214 (260)
158 3d31_A Sulfate/molybdate ABC t 99.8 4.4E-22 1.5E-26 161.4 -5.8 77 140-216 137-216 (348)
159 2pcj_A ABC transporter, lipopr 99.8 5.9E-22 2E-26 152.0 -5.2 71 140-211 150-222 (224)
160 1cip_A Protein (guanine nucleo 99.8 1.1E-18 3.6E-23 142.1 13.6 116 62-177 192-344 (353)
161 2qi9_C Vitamin B12 import ATP- 99.8 3.2E-21 1.1E-25 149.9 -1.7 77 140-216 136-221 (249)
162 1pui_A ENGB, probable GTP-bind 99.8 7.9E-19 2.7E-23 133.0 11.3 160 12-180 24-202 (210)
163 3geh_A MNME, tRNA modification 99.8 3.7E-19 1.3E-23 149.6 9.5 153 13-177 223-384 (462)
164 3t5d_A Septin-7; GTP-binding p 99.8 6.6E-19 2.2E-23 139.1 10.0 161 10-174 4-201 (274)
165 2ged_A SR-beta, signal recogni 99.8 8.6E-19 2.9E-23 131.0 9.9 116 11-135 45-172 (193)
166 3sjy_A Translation initiation 99.8 1.5E-17 5.1E-22 138.2 18.2 161 10-176 4-191 (403)
167 1ega_A Protein (GTP-binding pr 99.8 3.7E-18 1.3E-22 136.5 14.0 155 14-175 8-173 (301)
168 1s0u_A EIF-2-gamma, translatio 99.8 1.1E-17 3.8E-22 139.2 17.1 164 11-176 5-197 (408)
169 1wb1_A Translation elongation 99.8 4E-18 1.4E-22 144.4 14.4 158 13-176 18-188 (482)
170 2xtz_A Guanine nucleotide-bind 99.8 2.3E-18 7.9E-23 140.1 12.3 117 61-177 181-345 (354)
171 3cb4_D GTP-binding protein LEP 99.8 8.1E-18 2.8E-22 145.2 16.3 158 13-176 3-181 (599)
172 2qag_A Septin-2, protein NEDD5 99.8 2.1E-19 7.1E-24 147.1 5.6 161 12-177 35-233 (361)
173 3ohm_A Guanine nucleotide-bind 99.8 2.9E-18 9.9E-23 137.7 12.1 116 62-177 166-318 (327)
174 2ywe_A GTP-binding protein LEP 99.8 1.8E-17 6.3E-22 142.9 17.8 159 12-176 4-183 (600)
175 1kk1_A EIF2gamma; initiation o 99.8 6.9E-18 2.3E-22 140.5 14.6 166 9-176 5-199 (410)
176 3lxw_A GTPase IMAP family memb 99.8 5.5E-18 1.9E-22 131.9 13.0 165 10-178 17-209 (247)
177 2hjg_A GTP-binding protein ENG 99.8 7.7E-19 2.6E-23 147.3 7.4 151 15-176 4-164 (436)
178 1mv5_A LMRA, multidrug resista 99.8 8.2E-20 2.8E-24 141.8 1.0 75 139-215 148-224 (243)
179 2ff7_A Alpha-hemolysin translo 99.8 5.8E-20 2E-24 142.8 0.1 75 140-216 155-231 (247)
180 3nh6_A ATP-binding cassette SU 99.8 3E-19 1E-23 142.5 4.0 76 139-216 199-276 (306)
181 3j2k_7 ERF3, eukaryotic polype 99.7 2.2E-17 7.6E-22 138.4 14.9 156 9-169 12-217 (439)
182 2nq2_C Hypothetical ABC transp 99.7 6.8E-21 2.3E-25 148.6 -6.3 76 139-215 137-215 (253)
183 2zu0_C Probable ATP-dependent 99.7 7E-21 2.4E-25 149.7 -6.3 78 139-216 173-253 (267)
184 3p26_A Elongation factor 1 alp 99.7 8.4E-18 2.9E-22 142.7 11.5 150 13-166 32-227 (483)
185 1zcb_A G alpha I/13; GTP-bindi 99.7 1.9E-17 6.4E-22 135.2 12.7 116 62-177 200-353 (362)
186 2d2e_A SUFC protein; ABC-ATPas 99.7 7.9E-20 2.7E-24 142.4 -1.5 75 139-213 152-229 (250)
187 2cbz_A Multidrug resistance-as 99.7 7.2E-20 2.5E-24 141.5 -2.1 176 16-215 33-215 (237)
188 3tr5_A RF-3, peptide chain rel 99.7 1.7E-17 5.9E-22 141.6 12.0 117 11-133 10-148 (528)
189 4fid_A G protein alpha subunit 99.7 2.3E-17 7.9E-22 133.0 11.3 117 61-177 159-328 (340)
190 3izy_P Translation initiation 99.7 2.7E-19 9.2E-24 152.4 -0.2 158 14-176 4-167 (537)
191 2pjz_A Hypothetical protein ST 99.7 3.5E-20 1.2E-24 145.1 -5.6 74 140-216 138-214 (263)
192 2ghi_A Transport protein; mult 99.7 3.7E-19 1.3E-23 139.3 -0.2 76 139-216 164-241 (260)
193 3gd7_A Fusion complex of cysti 99.7 2.2E-19 7.5E-24 147.6 -2.2 75 139-215 164-240 (390)
194 2ixe_A Antigen peptide transpo 99.7 8.1E-20 2.8E-24 143.8 -4.6 76 139-215 165-243 (271)
195 1udx_A The GTP-binding protein 99.7 1.1E-16 3.7E-21 132.7 13.8 158 16-177 159-325 (416)
196 2qnr_A Septin-2, protein NEDD5 99.7 7.2E-18 2.4E-22 134.8 6.2 162 11-177 15-214 (301)
197 4dcu_A GTP-binding protein ENG 99.7 1.8E-17 6.3E-22 139.7 8.7 152 13-175 22-183 (456)
198 2c78_A Elongation factor TU-A; 99.7 2.6E-17 8.8E-22 136.8 9.4 146 12-163 9-180 (405)
199 1g7s_A Translation initiation 99.7 1.2E-16 4.1E-21 138.1 13.3 157 14-177 5-218 (594)
200 2elf_A Protein translation elo 99.7 8E-17 2.7E-21 132.1 11.6 146 16-177 23-180 (370)
201 1d2e_A Elongation factor TU (E 99.7 9.2E-17 3.1E-21 133.1 11.7 157 13-175 2-193 (397)
202 1jny_A EF-1-alpha, elongation 99.7 2.5E-17 8.7E-22 138.0 8.2 155 12-169 4-205 (435)
203 3izq_1 HBS1P, elongation facto 99.7 4.1E-17 1.4E-21 141.6 9.2 154 12-167 165-362 (611)
204 3b5x_A Lipid A export ATP-bind 99.7 2E-17 6.8E-22 143.4 7.1 76 139-216 489-566 (582)
205 1zun_B Sulfate adenylate trans 99.7 5.9E-16 2E-20 129.7 15.2 154 11-169 21-216 (434)
206 3def_A T7I23.11 protein; chlor 99.7 6.9E-16 2.3E-20 121.0 14.3 126 13-141 35-173 (262)
207 2aka_B Dynamin-1; fusion prote 99.7 1E-16 3.4E-21 127.9 9.5 160 11-173 23-249 (299)
208 2pze_A Cystic fibrosis transme 99.7 2.9E-19 9.8E-24 137.5 -5.8 77 139-216 139-217 (229)
209 1sgw_A Putative ABC transporte 99.7 2E-18 6.9E-23 131.2 -1.3 65 141-206 144-210 (214)
210 2yl4_A ATP-binding cassette SU 99.7 3.9E-17 1.3E-21 141.9 5.5 75 140-216 493-569 (595)
211 3b60_A Lipid A export ATP-bind 99.7 1.9E-17 6.5E-22 143.5 3.5 75 140-216 490-566 (582)
212 2dy1_A Elongation factor G; tr 99.7 1.6E-15 5.3E-20 133.1 15.6 115 12-132 7-139 (665)
213 1zo1_I IF2, translation initia 99.7 7.8E-18 2.7E-22 142.3 0.8 154 14-173 4-163 (501)
214 4a82_A Cystic fibrosis transme 99.7 1.7E-17 5.9E-22 143.6 2.9 75 140-216 487-563 (578)
215 1r5b_A Eukaryotic peptide chai 99.7 5.3E-17 1.8E-21 137.1 5.8 155 12-168 41-243 (467)
216 3qf4_B Uncharacterized ABC tra 99.7 9.9E-18 3.4E-22 145.6 1.1 76 139-216 500-577 (598)
217 3t34_A Dynamin-related protein 99.6 2.5E-16 8.6E-21 128.9 8.2 161 13-175 33-259 (360)
218 3avx_A Elongation factor TS, e 99.6 1.1E-15 3.7E-20 138.5 12.8 162 10-175 292-484 (1289)
219 3qf4_A ABC transporter, ATP-bi 99.6 1.2E-17 4E-22 144.8 0.1 76 139-216 488-565 (587)
220 2qag_C Septin-7; cell cycle, c 99.6 3.2E-16 1.1E-20 130.0 8.3 160 10-173 27-223 (418)
221 1f60_A Elongation factor EEF1A 99.6 2.4E-16 8.1E-21 132.8 7.0 151 12-167 5-202 (458)
222 3j16_B RLI1P; ribosome recycli 99.6 9.9E-18 3.4E-22 145.0 -1.5 76 141-216 478-558 (608)
223 2bbs_A Cystic fibrosis transme 99.6 1.4E-17 4.7E-22 132.1 -0.8 76 139-215 168-245 (290)
224 1h65_A Chloroplast outer envel 99.6 6.8E-15 2.3E-19 115.8 14.6 127 12-141 37-176 (270)
225 1dar_A EF-G, elongation factor 99.6 1.8E-14 6.2E-19 126.8 18.7 122 6-133 4-143 (691)
226 2j69_A Bacterial dynamin-like 99.6 1.7E-15 5.7E-20 133.5 10.5 162 13-177 68-325 (695)
227 1jwy_B Dynamin A GTPase domain 99.6 2.8E-15 9.5E-20 120.4 10.9 164 11-177 21-262 (315)
228 3ozx_A RNAse L inhibitor; ATP 99.6 1.2E-17 4.3E-22 142.8 -4.0 64 141-204 396-462 (538)
229 4f4c_A Multidrug resistance pr 99.6 5.2E-16 1.8E-20 145.1 6.2 177 16-216 446-640 (1321)
230 2xex_A Elongation factor G; GT 99.6 6.1E-14 2.1E-18 123.5 18.2 117 11-133 7-141 (693)
231 3mca_A HBS1, elongation factor 99.6 3.2E-16 1.1E-20 135.7 3.5 150 11-165 174-371 (592)
232 3bk7_A ABC transporter ATP-bin 99.6 1.2E-17 4E-22 144.8 -5.7 76 141-216 482-562 (607)
233 4f4c_A Multidrug resistance pr 99.6 6.6E-17 2.3E-21 151.0 -1.4 75 140-216 1227-1303(1321)
234 1yqt_A RNAse L inhibitor; ATP- 99.6 2.3E-17 7.9E-22 141.4 -4.5 75 142-216 413-492 (538)
235 3g5u_A MCG1178, multidrug resi 99.6 9.4E-16 3.2E-20 143.0 5.3 76 139-216 535-612 (1284)
236 1wxq_A GTP-binding protein; st 99.6 1.4E-15 4.8E-20 125.7 5.6 85 15-99 1-114 (397)
237 2h5e_A Peptide chain release f 99.6 1.8E-13 6.3E-18 116.9 18.4 116 12-133 11-148 (529)
238 3g5u_A MCG1178, multidrug resi 99.6 3.5E-16 1.2E-20 145.8 1.7 74 141-216 1182-1257(1284)
239 1jal_A YCHF protein; nucleotid 99.5 2.7E-13 9.3E-18 110.2 16.3 84 15-98 3-108 (363)
240 2rdo_7 EF-G, elongation factor 99.5 4.3E-13 1.5E-17 118.3 18.6 120 10-133 6-148 (704)
241 1azs_C GS-alpha; complex (lyas 99.5 4.6E-14 1.6E-18 116.2 11.3 121 55-177 211-385 (402)
242 3ux8_A Excinuclease ABC, A sub 99.5 8.6E-17 2.9E-21 141.5 -5.3 76 140-216 212-297 (670)
243 1u0l_A Probable GTPase ENGC; p 99.5 5.1E-15 1.8E-19 118.3 5.1 134 29-173 32-169 (301)
244 3j16_B RLI1P; ribosome recycli 99.5 1.6E-15 5.4E-20 131.3 -0.2 69 139-207 230-300 (608)
245 3ozx_A RNAse L inhibitor; ATP 99.5 1.2E-15 4E-20 130.6 -1.2 68 139-207 147-216 (538)
246 2www_A Methylmalonic aciduria 99.5 1.7E-13 5.8E-18 111.6 11.6 163 12-190 72-288 (349)
247 2wsm_A Hydrogenase expression/ 99.5 1.3E-13 4.4E-18 105.0 10.0 153 13-176 29-213 (221)
248 2x2e_A Dynamin-1; nitration, h 99.5 2.4E-14 8.3E-19 116.8 6.2 155 12-173 29-254 (353)
249 1yqt_A RNAse L inhibitor; ATP- 99.5 1.8E-15 6.3E-20 129.6 -1.1 67 139-205 167-235 (538)
250 2hf9_A Probable hydrogenase ni 99.5 1.6E-15 5.4E-20 116.0 -1.9 57 120-176 165-223 (226)
251 2iw3_A Elongation factor 3A; a 99.4 2.4E-15 8.3E-20 135.2 -2.8 74 139-215 557-633 (986)
252 3bk7_A ABC transporter ATP-bin 99.4 8.6E-16 2.9E-20 133.1 -5.6 66 139-204 237-304 (607)
253 2iw3_A Elongation factor 3A; a 99.4 3.6E-15 1.2E-19 134.1 -2.9 68 141-211 912-981 (986)
254 1n0u_A EF-2, elongation factor 99.4 1.1E-12 3.6E-17 117.9 12.8 118 11-132 16-163 (842)
255 3p32_A Probable GTPase RV1496/ 99.4 2.8E-13 9.5E-18 110.6 8.3 104 63-177 172-284 (355)
256 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3.4E-15 1.2E-19 122.7 -3.5 166 12-213 18-209 (392)
257 2dby_A GTP-binding protein; GD 99.4 1E-12 3.5E-17 107.3 10.5 84 15-98 2-111 (368)
258 4a9a_A Ribosome-interacting GT 99.4 6.8E-12 2.3E-16 102.5 14.9 156 10-169 68-240 (376)
259 2qm8_A GTPase/ATPase; G protei 99.4 3E-13 1E-17 109.6 6.6 103 63-176 148-260 (337)
260 3ux8_A Excinuclease ABC, A sub 99.4 1.1E-14 3.7E-19 128.2 -3.1 76 141-217 554-640 (670)
261 2qpt_A EH domain-containing pr 99.4 1.4E-12 4.7E-17 112.0 9.8 117 11-133 62-232 (550)
262 1yrb_A ATP(GTP)binding protein 99.4 1.5E-11 5.3E-16 95.9 13.4 112 63-177 109-257 (262)
263 2p67_A LAO/AO transport system 99.4 6.3E-13 2.1E-17 107.9 5.6 103 63-176 149-260 (341)
264 3vqt_A RF-3, peptide chain rel 99.3 4.5E-11 1.5E-15 102.6 17.0 116 13-134 30-167 (548)
265 2ohf_A Protein OLA1, GTP-bindi 99.3 4.7E-12 1.6E-16 103.9 6.9 89 13-101 21-131 (396)
266 3pih_A Uvrabc system protein A 99.3 4.1E-14 1.4E-18 127.0 -7.3 75 142-217 817-902 (916)
267 3zvr_A Dynamin-1; hydrolase, D 99.2 4.4E-11 1.5E-15 105.4 11.5 156 12-174 49-275 (772)
268 2v9p_A Replication protein E1; 99.2 2.4E-12 8.1E-17 102.4 0.6 136 16-215 128-264 (305)
269 2npi_A Protein CLP1; CLP1-PCF1 99.2 2.9E-13 1E-17 113.7 -6.1 68 142-215 247-336 (460)
270 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 9.6E-11 3.3E-15 95.9 8.5 73 135-208 278-364 (365)
271 4fn5_A EF-G 1, elongation fact 99.1 2.5E-09 8.5E-14 94.6 17.6 121 9-133 8-151 (709)
272 2vf7_A UVRA2, excinuclease ABC 99.1 1E-13 3.6E-18 123.4 -11.3 75 142-217 742-827 (842)
273 1tq4_A IIGP1, interferon-induc 99.1 1.1E-10 3.8E-15 96.5 5.7 111 15-131 70-187 (413)
274 3j25_A Tetracycline resistance 99.0 1.8E-10 6.2E-15 100.7 5.5 114 15-134 3-134 (638)
275 4aby_A DNA repair protein RECN 99.0 2.2E-11 7.5E-16 101.3 -0.4 66 142-209 307-380 (415)
276 2yv5_A YJEQ protein; hydrolase 99.0 6.8E-10 2.3E-14 88.5 8.1 98 73-173 66-165 (302)
277 4gp7_A Metallophosphoesterase; 99.0 9.8E-12 3.4E-16 91.1 -2.8 55 139-193 92-164 (171)
278 1znw_A Guanylate kinase, GMP k 99.0 8.8E-13 3E-17 99.6 -9.9 42 161-202 160-202 (207)
279 2obl_A ESCN; ATPase, hydrolase 99.0 5.2E-11 1.8E-15 96.6 -0.8 59 156-216 189-254 (347)
280 3l82_B F-box only protein 4; T 98.9 1.7E-09 5.7E-14 80.7 6.9 103 71-176 110-222 (227)
281 2dpy_A FLII, flagellum-specifi 98.9 3.4E-11 1.2E-15 100.6 -3.1 59 156-216 276-343 (438)
282 1e69_A Chromosome segregation 98.9 1.6E-09 5.5E-14 87.2 6.3 62 142-205 231-300 (322)
283 2ehv_A Hypothetical protein PH 98.9 1.1E-10 3.8E-15 90.1 -1.2 56 148-203 135-207 (251)
284 3sop_A Neuronal-specific septi 98.8 1.8E-08 6E-13 79.0 9.9 30 14-43 2-31 (270)
285 4a74_A DNA repair and recombin 98.8 5.3E-10 1.8E-14 85.3 0.0 42 164-205 155-201 (231)
286 2qag_B Septin-6, protein NEDD5 98.8 1E-07 3.5E-12 78.9 13.4 61 14-74 42-106 (427)
287 3b85_A Phosphate starvation-in 98.8 1.1E-10 3.6E-15 88.2 -4.7 63 126-206 108-172 (208)
288 3l2o_B F-box only protein 4; s 98.8 1.8E-08 6.2E-13 78.7 7.7 104 70-176 194-307 (312)
289 2pt7_A CAG-ALFA; ATPase, prote 98.7 2.1E-10 7.2E-15 92.6 -3.9 58 141-207 233-293 (330)
290 3thx_A DNA mismatch repair pro 98.7 3.4E-09 1.2E-13 95.7 3.0 68 147-215 740-811 (934)
291 2bdt_A BH3686; alpha-beta prot 98.7 1.3E-09 4.5E-14 80.8 -1.2 69 144-216 114-183 (189)
292 1tf7_A KAIC; homohexamer, hexa 98.7 7.5E-10 2.6E-14 94.8 -3.0 64 142-205 365-444 (525)
293 1tf7_A KAIC; homohexamer, hexa 98.7 4.9E-09 1.7E-13 89.8 1.7 58 149-206 139-212 (525)
294 2w0m_A SSO2452; RECA, SSPF, un 98.6 5.4E-08 1.8E-12 74.0 7.0 57 148-204 121-192 (235)
295 2j37_W Signal recognition part 98.6 2.9E-07 9.8E-12 78.0 10.8 151 13-174 100-310 (504)
296 3szr_A Interferon-induced GTP- 98.5 1.2E-08 4E-13 88.8 0.9 59 156-214 162-234 (608)
297 1cr0_A DNA primase/helicase; R 98.5 7.5E-08 2.6E-12 76.3 4.5 62 145-206 144-237 (296)
298 3b9q_A Chloroplast SRP recepto 98.5 3.7E-08 1.3E-12 78.4 2.4 57 146-208 217-286 (302)
299 2eyu_A Twitching motility prot 98.5 2.3E-09 8E-14 83.6 -4.6 58 139-203 89-147 (261)
300 3jvv_A Twitching mobility prot 98.5 1.1E-08 3.9E-13 83.1 -0.8 23 16-38 125-147 (356)
301 2o8b_B DNA mismatch repair pro 98.5 2.2E-08 7.4E-13 91.5 0.1 70 142-212 862-937 (1022)
302 2og2_A Putative signal recogni 98.4 1.6E-07 5.4E-12 76.4 3.9 62 142-209 270-344 (359)
303 2cvh_A DNA repair and recombin 98.4 5E-08 1.7E-12 73.7 0.7 56 149-204 106-185 (220)
304 3ec1_A YQEH GTPase; atnos1, at 98.4 3.4E-08 1.2E-12 80.8 -0.2 110 15-133 163-288 (369)
305 1n0w_A DNA repair protein RAD5 98.4 7.4E-07 2.5E-11 68.2 6.8 42 164-205 149-210 (243)
306 3h2y_A GTPase family protein; 98.4 1.2E-07 4.2E-12 77.5 2.2 110 15-133 161-287 (368)
307 3h2y_A GTPase family protein; 98.3 2.9E-06 9.8E-11 69.4 9.8 96 73-175 56-158 (368)
308 3pih_A Uvrabc system protein A 98.3 5.3E-08 1.8E-12 87.8 -0.9 74 142-216 476-559 (916)
309 1wb9_A DNA mismatch repair pro 98.3 1.9E-07 6.4E-12 83.4 2.4 66 146-212 684-753 (800)
310 1puj_A YLQF, conserved hypothe 98.3 9.3E-07 3.2E-11 69.6 5.4 58 12-74 118-176 (282)
311 2r6f_A Excinuclease ABC subuni 98.2 2.1E-07 7.2E-12 83.8 1.5 75 142-217 516-600 (972)
312 3cnl_A YLQF, putative uncharac 98.2 4.5E-07 1.5E-11 70.7 2.8 57 15-75 100-156 (262)
313 3ec2_A DNA replication protein 98.2 6.1E-07 2.1E-11 65.7 2.8 24 15-38 39-62 (180)
314 1f5n_A Interferon-induced guan 98.2 1.6E-06 5.5E-11 74.7 5.4 64 11-75 35-103 (592)
315 1ye8_A Protein THEP1, hypothet 98.1 1.1E-06 3.7E-11 64.5 3.3 50 145-197 96-152 (178)
316 2r6f_A Excinuclease ABC subuni 98.1 1.8E-07 6.2E-12 84.2 -1.6 74 142-216 857-941 (972)
317 2ygr_A Uvrabc system protein A 98.1 3.4E-07 1.2E-11 82.7 -0.0 74 142-216 533-616 (993)
318 2vf7_A UVRA2, excinuclease ABC 98.1 5.1E-07 1.8E-11 80.7 0.8 75 142-217 391-475 (842)
319 1rj9_A FTSY, signal recognitio 98.1 9.5E-07 3.3E-11 70.3 2.1 25 15-39 103-127 (304)
320 3ec1_A YQEH GTPase; atnos1, at 98.1 1.2E-05 4.1E-10 65.7 8.2 97 72-175 57-160 (369)
321 3e70_C DPA, signal recognition 98.1 1.1E-05 3.9E-10 64.7 7.8 26 13-38 128-153 (328)
322 2ygr_A Uvrabc system protein A 98.1 2.6E-07 9E-12 83.4 -2.0 74 142-216 875-959 (993)
323 1htw_A HI0065; nucleotide-bind 98.1 2.5E-06 8.7E-11 61.2 3.5 28 16-44 35-62 (158)
324 1f2t_B RAD50 ABC-ATPase; DNA d 98.0 7.3E-07 2.5E-11 63.4 0.5 59 143-202 76-136 (148)
325 3dm5_A SRP54, signal recogniti 98.0 0.00012 4.1E-09 60.9 13.2 84 63-156 183-272 (443)
326 1lvg_A Guanylate kinase, GMP k 98.0 4.2E-06 1.5E-10 62.3 3.2 23 16-38 6-28 (198)
327 1puj_A YLQF, conserved hypothe 98.0 2.4E-05 8.3E-10 61.5 7.7 99 69-177 5-106 (282)
328 1pzn_A RAD51, DNA repair and r 97.9 6.4E-06 2.2E-10 66.8 4.5 49 164-212 261-310 (349)
329 3a00_A Guanylate kinase, GMP k 97.9 5.1E-06 1.7E-10 61.2 3.1 22 17-38 4-25 (186)
330 3tr0_A Guanylate kinase, GMP k 97.9 5.8E-06 2E-10 61.5 3.2 23 16-38 9-31 (205)
331 1s96_A Guanylate kinase, GMP k 97.9 6.1E-06 2.1E-10 62.5 3.2 24 16-39 18-41 (219)
332 3thx_B DNA mismatch repair pro 97.9 3.3E-06 1.1E-10 76.3 1.9 61 147-208 751-816 (918)
333 1z6g_A Guanylate kinase; struc 97.9 6.5E-06 2.2E-10 62.3 3.2 46 156-201 155-207 (218)
334 1kgd_A CASK, peripheral plasma 97.9 7.2E-06 2.5E-10 60.0 3.2 23 16-38 7-29 (180)
335 3c8u_A Fructokinase; YP_612366 97.8 1E-05 3.5E-10 60.6 3.3 27 12-38 20-46 (208)
336 3kl4_A SRP54, signal recogniti 97.8 0.00013 4.6E-09 60.5 10.1 85 63-157 180-272 (433)
337 1t9h_A YLOQ, probable GTPase E 97.8 6.7E-06 2.3E-10 65.4 2.2 27 16-42 175-201 (307)
338 2i3b_A HCR-ntpase, human cance 97.8 1.2E-05 4.2E-10 59.4 3.0 62 146-210 103-169 (189)
339 1zp6_A Hypothetical protein AT 97.8 1.3E-05 4.4E-10 59.0 3.1 23 15-37 10-32 (191)
340 1j8m_F SRP54, signal recogniti 97.8 7E-05 2.4E-09 59.3 7.5 84 63-157 181-273 (297)
341 2v3c_C SRP54, signal recogniti 97.7 0.00025 8.6E-09 59.0 10.6 23 15-37 100-122 (432)
342 3asz_A Uridine kinase; cytidin 97.7 1.7E-05 5.9E-10 59.3 3.2 23 15-37 7-29 (211)
343 1u0l_A Probable GTPase ENGC; p 97.7 1.9E-05 6.5E-10 62.7 3.5 28 16-43 171-198 (301)
344 2rcn_A Probable GTPase ENGC; Y 97.7 2.9E-05 1E-09 62.9 4.3 29 16-44 217-246 (358)
345 2gza_A Type IV secretion syste 97.7 1.5E-05 5.2E-10 64.9 2.4 26 15-40 176-201 (361)
346 3tau_A Guanylate kinase, GMP k 97.6 2.7E-05 9.1E-10 58.3 3.3 23 16-38 10-32 (208)
347 3ney_A 55 kDa erythrocyte memb 97.6 3.1E-05 1.1E-09 57.5 3.2 24 15-38 20-43 (197)
348 2f1r_A Molybdopterin-guanine d 97.6 1E-05 3.5E-10 58.8 0.6 39 16-62 4-42 (171)
349 2yv5_A YJEQ protein; hydrolase 97.6 4.1E-05 1.4E-09 60.8 4.1 28 16-44 167-194 (302)
350 1lw7_A Transcriptional regulat 97.6 2.8E-05 9.4E-10 63.4 3.1 57 157-216 297-354 (365)
351 1knq_A Gluconate kinase; ALFA/ 97.6 3.8E-05 1.3E-09 55.6 3.5 23 15-37 9-31 (175)
352 2bbw_A Adenylate kinase 4, AK4 97.6 3.4E-05 1.1E-09 59.3 3.3 25 15-39 28-55 (246)
353 3lnc_A Guanylate kinase, GMP k 97.6 1.8E-05 6.3E-10 60.1 1.8 23 16-38 29-52 (231)
354 1bif_A 6-phosphofructo-2-kinas 97.6 5.2E-06 1.8E-10 70.0 -1.5 100 14-115 39-148 (469)
355 3aez_A Pantothenate kinase; tr 97.6 4.8E-05 1.6E-09 60.7 4.2 29 11-39 87-115 (312)
356 2j41_A Guanylate kinase; GMP, 97.6 3.7E-05 1.3E-09 57.1 3.3 24 15-38 7-30 (207)
357 3q5d_A Atlastin-1; G protein, 97.6 0.00014 4.7E-09 60.7 7.0 27 11-37 64-90 (447)
358 4eun_A Thermoresistant glucoki 97.6 3.7E-05 1.3E-09 57.1 3.2 23 15-37 30-52 (200)
359 3euj_A Chromosome partition pr 97.6 3.5E-05 1.2E-09 64.8 3.3 28 16-43 31-58 (483)
360 1kag_A SKI, shikimate kinase I 97.6 4.1E-05 1.4E-09 55.3 3.2 22 16-37 6-27 (173)
361 2jeo_A Uridine-cytidine kinase 97.6 4.2E-05 1.4E-09 58.7 3.4 23 15-37 26-48 (245)
362 3lda_A DNA repair protein RAD5 97.5 0.00015 5E-09 59.8 6.5 41 165-205 304-364 (400)
363 4ad8_A DNA repair protein RECN 97.4 5.7E-05 2E-09 64.4 2.9 61 142-204 409-473 (517)
364 3uie_A Adenylyl-sulfate kinase 97.4 7.3E-05 2.5E-09 55.5 3.2 25 14-38 25-49 (200)
365 1sq5_A Pantothenate kinase; P- 97.4 8.7E-05 3E-09 59.1 3.6 25 14-38 80-104 (308)
366 1ex7_A Guanylate kinase; subst 97.4 8.6E-05 2.9E-09 54.6 3.2 21 17-37 4-24 (186)
367 3kta_A Chromosome segregation 97.4 7.5E-05 2.6E-09 54.4 2.9 25 16-40 28-52 (182)
368 2if2_A Dephospho-COA kinase; a 97.4 7.8E-05 2.7E-09 55.3 3.0 21 16-36 3-23 (204)
369 2oap_1 GSPE-2, type II secreti 97.4 8.9E-05 3E-09 63.1 3.5 27 16-42 262-288 (511)
370 1cke_A CK, MSSA, protein (cyti 97.4 0.00011 3.6E-09 55.5 3.5 23 15-37 6-28 (227)
371 2kjq_A DNAA-related protein; s 97.4 7.1E-05 2.4E-09 53.0 2.3 23 16-38 38-60 (149)
372 1jjv_A Dephospho-COA kinase; P 97.4 0.00012 4.1E-09 54.4 3.6 23 15-37 3-25 (206)
373 2o5v_A DNA replication and rep 97.4 2.3E-05 7.9E-10 63.7 -0.4 68 142-216 277-355 (359)
374 1p9r_A General secretion pathw 97.3 9.4E-05 3.2E-09 61.3 3.1 26 16-41 169-194 (418)
375 2qor_A Guanylate kinase; phosp 97.3 0.00011 3.8E-09 54.7 3.2 23 16-38 14-36 (204)
376 2vp4_A Deoxynucleoside kinase; 97.3 0.00011 3.9E-09 55.7 3.3 26 12-37 18-43 (230)
377 4e22_A Cytidylate kinase; P-lo 97.3 8.7E-05 3E-09 57.3 2.6 25 15-39 28-55 (252)
378 1nij_A Hypothetical protein YJ 97.3 0.00012 4.2E-09 58.5 3.5 24 15-38 5-28 (318)
379 2x8a_A Nuclear valosin-contain 97.3 0.00011 3.9E-09 57.4 3.2 21 17-37 47-67 (274)
380 2ewv_A Twitching motility prot 97.3 0.00011 3.7E-09 60.1 3.1 23 16-38 138-160 (372)
381 1qhl_A Protein (cell division 97.3 2E-05 6.7E-10 60.0 -1.6 27 17-43 30-56 (227)
382 3tqc_A Pantothenate kinase; bi 97.3 0.00014 4.7E-09 58.2 3.2 25 14-38 92-116 (321)
383 1np6_A Molybdopterin-guanine d 97.3 0.00015 5.3E-09 52.7 3.2 23 15-37 7-29 (174)
384 2yhs_A FTSY, cell division pro 97.3 0.00014 4.7E-09 61.3 3.2 24 15-38 294-317 (503)
385 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00017 5.7E-09 51.1 3.2 20 17-36 26-45 (149)
386 2qt1_A Nicotinamide riboside k 97.3 0.00019 6.7E-09 53.4 3.7 24 14-37 21-44 (207)
387 3t61_A Gluconokinase; PSI-biol 97.2 0.00013 4.4E-09 54.2 2.5 23 15-37 19-41 (202)
388 3kb2_A SPBC2 prophage-derived 97.2 0.00017 5.8E-09 51.8 3.1 22 16-37 3-24 (173)
389 1rz3_A Hypothetical protein rb 97.2 0.00018 6.2E-09 53.4 3.3 24 14-37 22-45 (201)
390 1ixz_A ATP-dependent metallopr 97.2 0.00018 6.2E-09 55.3 3.2 21 17-37 52-72 (254)
391 3vaa_A Shikimate kinase, SK; s 97.2 0.00021 7.2E-09 52.9 3.4 22 16-37 27-48 (199)
392 3lw7_A Adenylate kinase relate 97.2 0.00019 6.6E-09 51.5 3.0 19 16-34 3-21 (179)
393 3fb4_A Adenylate kinase; psych 97.2 0.0002 7E-09 53.5 3.2 23 15-37 1-23 (216)
394 3dl0_A Adenylate kinase; phosp 97.2 0.00022 7.5E-09 53.4 3.2 23 15-37 1-23 (216)
395 1in4_A RUVB, holliday junction 97.2 0.00021 7.1E-09 57.5 3.2 22 16-37 53-74 (334)
396 3qkt_A DNA double-strand break 97.2 5.6E-05 1.9E-09 61.0 -0.2 57 146-203 270-328 (339)
397 2jaq_A Deoxyguanosine kinase; 97.2 0.00024 8.2E-09 52.5 3.2 22 16-37 2-23 (205)
398 2wwf_A Thymidilate kinase, put 97.1 0.00031 1E-08 52.3 3.5 23 15-37 11-33 (212)
399 1ly1_A Polynucleotide kinase; 97.1 0.00028 9.5E-09 51.0 3.2 22 15-36 3-24 (181)
400 1iy2_A ATP-dependent metallopr 97.1 0.00026 8.9E-09 55.3 3.2 21 17-37 76-96 (278)
401 3cm0_A Adenylate kinase; ATP-b 97.1 0.0004 1.4E-08 50.6 3.8 23 14-36 4-26 (186)
402 1odf_A YGR205W, hypothetical 3 97.1 0.00039 1.3E-08 54.8 3.9 25 13-37 30-54 (290)
403 1uf9_A TT1252 protein; P-loop, 97.1 0.00035 1.2E-08 51.5 3.3 24 14-37 8-31 (203)
404 2cdn_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 51.5 3.4 24 14-37 20-43 (201)
405 3sr0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 52.1 3.2 23 15-37 1-23 (206)
406 1nks_A Adenylate kinase; therm 97.0 0.00042 1.4E-08 50.6 3.4 22 16-37 3-24 (194)
407 1qhx_A CPT, protein (chloramph 97.0 0.0004 1.4E-08 50.2 3.2 22 16-37 5-26 (178)
408 1kht_A Adenylate kinase; phosp 97.0 0.00041 1.4E-08 50.6 3.2 23 15-37 4-26 (192)
409 1e4v_A Adenylate kinase; trans 97.0 0.00037 1.3E-08 52.2 2.9 22 15-36 1-22 (214)
410 1via_A Shikimate kinase; struc 97.0 0.00041 1.4E-08 50.1 3.0 22 16-37 6-27 (175)
411 2yvu_A Probable adenylyl-sulfa 97.0 0.00063 2.2E-08 49.6 4.0 25 13-37 12-36 (186)
412 1xjc_A MOBB protein homolog; s 97.0 0.00051 1.7E-08 49.6 3.2 22 16-37 6-27 (169)
413 2pt5_A Shikimate kinase, SK; a 96.9 0.00052 1.8E-08 49.1 3.3 22 15-36 1-22 (168)
414 2pez_A Bifunctional 3'-phospho 96.9 0.0006 2E-08 49.4 3.6 24 14-37 5-28 (179)
415 3cnl_A YLQF, putative uncharac 96.9 0.00061 2.1E-08 52.9 3.7 85 79-174 14-98 (262)
416 3qks_A DNA double-strand break 96.9 0.00054 1.8E-08 51.0 3.2 20 17-36 26-45 (203)
417 1svm_A Large T antigen; AAA+ f 96.9 0.00049 1.7E-08 56.2 3.2 22 16-37 171-192 (377)
418 1gtv_A TMK, thymidylate kinase 96.9 0.0002 6.9E-09 53.4 0.8 22 16-37 2-23 (214)
419 2plr_A DTMP kinase, probable t 96.9 0.00067 2.3E-08 50.3 3.7 23 15-37 5-27 (213)
420 2rhm_A Putative kinase; P-loop 96.9 0.00052 1.8E-08 50.2 2.9 23 15-37 6-28 (193)
421 1ukz_A Uridylate kinase; trans 96.9 0.00076 2.6E-08 49.9 3.8 23 15-37 16-38 (203)
422 3trf_A Shikimate kinase, SK; a 96.9 0.00067 2.3E-08 49.3 3.4 22 16-37 7-28 (185)
423 3tlx_A Adenylate kinase 2; str 96.9 0.00071 2.4E-08 51.8 3.7 24 14-37 29-52 (243)
424 2ze6_A Isopentenyl transferase 96.9 0.0006 2.1E-08 52.6 3.2 22 16-37 3-24 (253)
425 2xb4_A Adenylate kinase; ATP-b 96.8 0.00065 2.2E-08 51.2 3.2 23 15-37 1-23 (223)
426 1y63_A LMAJ004144AAA protein; 96.8 0.00068 2.3E-08 49.5 3.2 23 15-37 11-33 (184)
427 2o5v_A DNA replication and rep 96.8 0.00063 2.2E-08 55.2 3.2 21 16-36 28-48 (359)
428 1nn5_A Similar to deoxythymidy 96.8 0.00082 2.8E-08 50.0 3.6 22 15-36 10-31 (215)
429 3nwj_A ATSK2; P loop, shikimat 96.8 0.00061 2.1E-08 52.5 3.0 22 15-36 49-70 (250)
430 1lv7_A FTSH; alpha/beta domain 96.8 0.00069 2.4E-08 52.1 3.2 22 16-37 47-68 (257)
431 1aky_A Adenylate kinase; ATP:A 96.8 0.00073 2.5E-08 50.7 3.3 23 15-37 5-27 (220)
432 3iij_A Coilin-interacting nucl 96.8 0.00072 2.5E-08 49.0 3.1 23 15-37 12-34 (180)
433 1tev_A UMP-CMP kinase; ploop, 96.8 0.00091 3.1E-08 48.8 3.7 22 15-36 4-25 (196)
434 2z0h_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 49.5 3.2 22 16-37 2-23 (197)
435 4eaq_A DTMP kinase, thymidylat 96.8 0.001 3.6E-08 50.4 4.0 25 13-37 25-49 (229)
436 1ewq_A DNA mismatch repair pro 96.8 0.00064 2.2E-08 60.5 3.2 61 146-212 653-719 (765)
437 1nlf_A Regulatory protein REPA 96.8 0.00064 2.2E-08 53.1 2.9 52 141-192 126-185 (279)
438 2v54_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 49.7 3.3 23 15-37 5-27 (204)
439 2pbr_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 49.2 3.2 21 16-36 2-22 (195)
440 1vht_A Dephospho-COA kinase; s 96.8 0.00096 3.3E-08 50.0 3.7 22 15-36 5-26 (218)
441 1gvn_B Zeta; postsegregational 96.8 0.00068 2.3E-08 53.3 2.9 23 15-37 34-56 (287)
442 3qkt_A DNA double-strand break 96.8 0.00074 2.5E-08 54.4 3.2 20 17-36 26-45 (339)
443 1zd8_A GTP:AMP phosphotransfer 96.8 0.00071 2.4E-08 51.1 2.9 22 15-36 8-29 (227)
444 2xxa_A Signal recognition part 96.8 0.023 7.9E-07 47.2 12.2 22 14-35 100-121 (433)
445 3r20_A Cytidylate kinase; stru 96.8 0.00081 2.8E-08 51.2 3.2 23 15-37 10-32 (233)
446 2p5t_B PEZT; postsegregational 96.8 0.00078 2.7E-08 51.8 3.1 24 14-37 32-55 (253)
447 1w1w_A Structural maintenance 96.7 0.00077 2.6E-08 56.1 3.2 20 17-36 29-48 (430)
448 1jbk_A CLPB protein; beta barr 96.7 0.00093 3.2E-08 48.3 3.2 22 16-37 45-66 (195)
449 3be4_A Adenylate kinase; malar 96.7 0.00082 2.8E-08 50.4 2.9 23 15-37 6-28 (217)
450 2px0_A Flagellar biosynthesis 96.7 0.00079 2.7E-08 53.2 2.9 24 15-38 106-129 (296)
451 2c95_A Adenylate kinase 1; tra 96.7 0.00092 3.1E-08 49.0 2.9 23 15-37 10-32 (196)
452 1ak2_A Adenylate kinase isoenz 96.7 0.00099 3.4E-08 50.5 3.2 23 15-37 17-39 (233)
453 1t9h_A YLOQ, probable GTPase E 96.7 0.00074 2.5E-08 53.6 2.5 88 79-169 79-169 (307)
454 1m7g_A Adenylylsulfate kinase; 96.7 0.001 3.6E-08 49.6 3.2 24 14-37 25-48 (211)
455 1zak_A Adenylate kinase; ATP:A 96.7 0.00094 3.2E-08 50.2 2.9 23 15-37 6-28 (222)
456 2bwj_A Adenylate kinase 5; pho 96.7 0.00098 3.4E-08 48.9 2.9 23 15-37 13-35 (199)
457 1e6c_A Shikimate kinase; phosp 96.7 0.0012 3.9E-08 47.4 3.2 22 16-37 4-25 (173)
458 1vma_A Cell division protein F 96.6 0.0011 3.8E-08 52.6 3.2 24 15-38 105-128 (306)
459 2w58_A DNAI, primosome compone 96.6 0.0012 4.1E-08 48.7 3.2 24 15-38 55-78 (202)
460 3co5_A Putative two-component 96.6 0.0036 1.2E-07 43.7 5.5 22 16-37 29-50 (143)
461 3gmt_A Adenylate kinase; ssgci 96.6 0.0013 4.4E-08 49.9 3.2 25 13-37 7-31 (230)
462 3bos_A Putative DNA replicatio 96.6 0.0014 4.7E-08 49.4 3.4 23 15-37 53-75 (242)
463 1qf9_A UMP/CMP kinase, protein 96.6 0.0016 5.3E-08 47.5 3.5 23 15-37 7-29 (194)
464 3umf_A Adenylate kinase; rossm 96.6 0.0014 4.6E-08 49.4 3.2 21 17-37 32-52 (217)
465 2iyv_A Shikimate kinase, SK; t 96.6 0.0014 4.9E-08 47.5 3.2 22 16-37 4-25 (184)
466 1sxj_E Activator 1 40 kDa subu 96.5 0.0011 3.6E-08 53.4 2.7 21 17-37 39-59 (354)
467 1uj2_A Uridine-cytidine kinase 96.5 0.0016 5.5E-08 50.0 3.5 22 15-36 23-44 (252)
468 2grj_A Dephospho-COA kinase; T 96.5 0.0021 7E-08 47.4 3.8 25 13-37 11-35 (192)
469 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0018 6.2E-08 50.0 3.6 22 15-36 5-26 (260)
470 1q3t_A Cytidylate kinase; nucl 96.5 0.0015 5.2E-08 49.6 3.1 23 14-36 16-38 (236)
471 3cr8_A Sulfate adenylyltranfer 96.5 0.00087 3E-08 57.5 1.9 26 13-38 368-393 (552)
472 2p65_A Hypothetical protein PF 96.5 0.0013 4.5E-08 47.3 2.6 22 16-37 45-66 (187)
473 2vli_A Antibiotic resistance p 96.5 0.0011 3.8E-08 48.0 2.1 22 15-36 6-27 (183)
474 3b9p_A CG5977-PA, isoform A; A 96.4 0.0017 5.9E-08 50.9 3.1 23 15-37 55-77 (297)
475 3cf0_A Transitional endoplasmi 96.4 0.0018 6E-08 51.2 3.1 22 16-37 51-72 (301)
476 1njg_A DNA polymerase III subu 96.4 0.0019 6.5E-08 48.4 3.2 22 16-37 47-68 (250)
477 3ake_A Cytidylate kinase; CMP 96.4 0.0021 7.1E-08 47.5 3.2 22 16-37 4-25 (208)
478 1l8q_A Chromosomal replication 96.4 0.0019 6.7E-08 51.4 3.1 22 16-37 39-60 (324)
479 2f6r_A COA synthase, bifunctio 96.4 0.0022 7.6E-08 50.2 3.4 23 14-36 75-97 (281)
480 1zuh_A Shikimate kinase; alpha 96.4 0.0023 7.9E-08 45.7 3.2 22 16-37 9-30 (168)
481 1sxj_C Activator 1 40 kDa subu 96.3 0.002 6.7E-08 51.7 3.1 23 17-39 49-71 (340)
482 2rcn_A Probable GTPase ENGC; Y 96.3 0.015 5.2E-07 47.0 8.2 86 83-171 127-213 (358)
483 3h4m_A Proteasome-activating n 96.3 0.0021 7.3E-08 50.0 3.1 22 16-37 53-74 (285)
484 2dr3_A UPF0273 protein PH0284; 96.3 0.0021 7.3E-08 48.7 2.9 55 149-203 129-196 (247)
485 2chg_A Replication factor C sm 96.3 0.0025 8.6E-08 47.1 3.2 21 17-37 41-61 (226)
486 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0025 8.6E-08 48.8 3.2 22 16-37 41-62 (262)
487 1ltq_A Polynucleotide kinase; 96.3 0.0024 8.2E-08 50.2 3.2 22 15-36 3-24 (301)
488 4fcw_A Chaperone protein CLPB; 96.3 0.0032 1.1E-07 49.6 3.9 25 14-38 47-71 (311)
489 3n70_A Transport activator; si 96.3 0.0043 1.5E-07 43.3 4.1 24 15-38 25-48 (145)
490 3m6a_A ATP-dependent protease 96.2 0.0024 8.2E-08 54.8 3.1 23 16-38 110-132 (543)
491 2qby_A CDC6 homolog 1, cell di 96.2 0.0024 8.2E-08 51.6 2.9 22 16-37 47-68 (386)
492 1fnn_A CDC6P, cell division co 96.2 0.0027 9.3E-08 51.5 3.2 23 16-38 46-68 (389)
493 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0026 8.9E-08 53.9 3.1 21 17-37 67-87 (499)
494 4ido_A Atlastin-1; GTPase, GTP 96.2 0.014 4.9E-07 48.6 7.4 64 11-74 64-151 (457)
495 1tue_A Replication protein E1; 96.2 0.0023 7.8E-08 47.6 2.4 21 17-37 61-81 (212)
496 3t15_A Ribulose bisphosphate c 96.1 0.0028 9.7E-08 49.8 2.9 23 15-37 37-59 (293)
497 3syl_A Protein CBBX; photosynt 96.1 0.0032 1.1E-07 49.5 3.3 25 13-37 66-90 (309)
498 2ga8_A Hypothetical 39.9 kDa p 96.1 0.004 1.4E-07 50.3 3.7 23 15-37 25-47 (359)
499 3auy_A DNA double-strand break 96.1 0.0029 9.9E-08 51.5 2.9 57 145-203 301-360 (371)
500 3auy_A DNA double-strand break 96.1 0.0012 4.1E-08 53.8 0.4 20 17-36 28-47 (371)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.4e-35 Score=224.65 Aligned_cols=168 Identities=39% Similarity=0.685 Sum_probs=145.3
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
+|...+||+|+|.+|||||||++++....|+..+.+|++.+.....+..++..+.+.+|||+|++++...+..+++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34557999999999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|||.++..+|+.+..|+..+......++|+++||||+|+...+.+..+++..++...++.|+++||+++.|++++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 99999999999999999999998877777899999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
.|.+.+..
T Consensus 169 ~i~~~i~~ 176 (216)
T 4dkx_A 169 RVAAALPG 176 (216)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99887653
No 2
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=196.13 Aligned_cols=173 Identities=49% Similarity=0.823 Sum_probs=157.8
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
.++...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++
T Consensus 8 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (196)
T 3tkl_A 8 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 87 (196)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred hcCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence 34556678899999999999999999999999999999999888888888888988899999999999999889999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.+|++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 99999999999999999999999999887777778999999999998888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYSN 178 (220)
Q Consensus 166 ~l~~~l~~~~~~~ 178 (220)
++|++|.+.+.+.
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-31 Score=199.51 Aligned_cols=172 Identities=43% Similarity=0.723 Sum_probs=154.8
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
+.+..+..+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 34556778999999999999999999999999998888898888888888888888999999999999988888899999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|||++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999988877666789999999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 167 AFEVVIREIYSN 178 (220)
Q Consensus 167 l~~~l~~~~~~~ 178 (220)
+|++|.+.+.+.
T Consensus 179 l~~~l~~~i~~~ 190 (201)
T 2ew1_A 179 LFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.9e-31 Score=198.81 Aligned_cols=171 Identities=47% Similarity=0.789 Sum_probs=144.9
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
.+..+..+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 34456689999999999999999999999999888888887777777888888889999999999999988899999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 166 (220)
+++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...++ .++++||+++.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999988877666789999999999987778889999999999999 999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 167 AFEVVIREIYSN 178 (220)
Q Consensus 167 l~~~l~~~~~~~ 178 (220)
+|++|.+.+.+.
T Consensus 183 l~~~l~~~i~~~ 194 (201)
T 2hup_A 183 AFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 5
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=1.8e-30 Score=193.57 Aligned_cols=172 Identities=46% Similarity=0.776 Sum_probs=155.5
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
+....+..+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 34455778999999999999999999999999998888888888777888888888899999999999988888999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|+|++++.++..+..|+..+........|+++++||+|+...+.+...++..++...+++++++||+++.|+++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999999888776666789999999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 167 AFEVVIREIYSN 178 (220)
Q Consensus 167 l~~~l~~~~~~~ 178 (220)
+|+++.+.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (186)
T 2bme_A 163 AFVQCARKILNK 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.98 E-value=4.2e-31 Score=196.63 Aligned_cols=170 Identities=49% Similarity=0.896 Sum_probs=125.4
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
..++.+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999999888888888877777788888888999999999999888888889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888776666789999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027703 170 VVIREIYSNI 179 (220)
Q Consensus 170 ~l~~~~~~~~ 179 (220)
+|.+.+.+..
T Consensus 164 ~l~~~i~~~~ 173 (183)
T 2fu5_C 164 TLARDIKAKM 173 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 7
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.98 E-value=1.5e-30 Score=192.46 Aligned_cols=170 Identities=49% Similarity=0.843 Sum_probs=152.4
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
++...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (179)
T 1z0f_A 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 87 (179)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT
T ss_pred CccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhcc
Confidence 34556778999999999999999999999999988888888877777778888888999999999999888889999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|+|+++..++..+..|+..+........|+++++||+|+...+.+..++++.++...++.++++||+++.|+++
T Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999988877666789999999999987778888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 167 AFEVVIREIY 176 (220)
Q Consensus 167 l~~~l~~~~~ 176 (220)
++++|.+.+.
T Consensus 168 l~~~l~~~i~ 177 (179)
T 1z0f_A 168 AFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=2e-30 Score=194.58 Aligned_cols=171 Identities=53% Similarity=0.877 Sum_probs=151.0
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
+....+.+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 45567789999999999999999999999999888888888777777888888889999999999998888889999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+++++|+|+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888776667899999999999877788889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 168 FEVVIREIYSN 178 (220)
Q Consensus 168 ~~~l~~~~~~~ 178 (220)
|++|.+.+.+.
T Consensus 175 ~~~l~~~i~~~ 185 (191)
T 2a5j_A 175 FINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 9
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=3e-30 Score=193.78 Aligned_cols=171 Identities=58% Similarity=0.963 Sum_probs=154.3
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
.++.+..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+.+..+.+.+||++|+..+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 45566789999999999999999999999999988888888777777888888889999999999998888899999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+++++|+|++++.++..+..|+..+........|+++++||+|+...+.+..++++.++...++.++++||+++.|++++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887766667899999999999877778889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 168 FEVVIREIYSN 178 (220)
Q Consensus 168 ~~~l~~~~~~~ 178 (220)
+++|.+.+.+.
T Consensus 179 ~~~l~~~i~~~ 189 (193)
T 2oil_A 179 FETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 10
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.98 E-value=3.6e-30 Score=192.75 Aligned_cols=173 Identities=42% Similarity=0.761 Sum_probs=155.2
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
.+....+..+||+++|++|||||||+++|.+..+...+.++.+.......+..++..+.+.+||++|+..+...+..++.
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 34556677899999999999999999999999998888888887777777778888899999999999988888899999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.++++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999988877766678999999999998777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYSN 178 (220)
Q Consensus 166 ~l~~~l~~~~~~~ 178 (220)
+++++|.+.+.+.
T Consensus 174 ~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 174 QVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.7e-30 Score=191.45 Aligned_cols=172 Identities=48% Similarity=0.774 Sum_probs=151.4
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
+....++.+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|...+...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34566788999999999999999999999999998888998888888888889988999999999999888888999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|+|++++.++..+..|+..+.... ...|+++++||+|+...+....+++..++...+++++++||+++.|+++
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999999999988887654 3689999999999988788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027703 167 AFEVVIREIYSNI 179 (220)
Q Consensus 167 l~~~l~~~~~~~~ 179 (220)
++++|.+.+.+..
T Consensus 161 l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 161 MFNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 12
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=5.6e-30 Score=190.00 Aligned_cols=171 Identities=40% Similarity=0.716 Sum_probs=151.1
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
.....+...+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++
T Consensus 4 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 83 (181)
T 2efe_B 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR 83 (181)
T ss_dssp ------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHT
T ss_pred cCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhc
Confidence 34556677899999999999999999999999998888888887777778888888899999999999998888999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.++++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+.
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 84 GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999999999999999999998887766678999999999998777888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 166 AAFEVVIREIY 176 (220)
Q Consensus 166 ~l~~~l~~~~~ 176 (220)
+++++|.+.+.
T Consensus 164 ~l~~~l~~~~~ 174 (181)
T 2efe_B 164 EIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 13
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.98 E-value=3.9e-30 Score=188.66 Aligned_cols=166 Identities=45% Similarity=0.729 Sum_probs=150.4
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.+...+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..++..+++
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCE
Confidence 35678999999999999999999999999988888888877777778888888999999999999988889999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|+|++++.++..+..|+..+........|+++++||+|+...+....+++..++...+++++++||+++.|++++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888777666789999999999987777888899999999999999999999999999999
Q ss_pred HHHHHH
Q 027703 170 VVIREI 175 (220)
Q Consensus 170 ~l~~~~ 175 (220)
+|.+.+
T Consensus 162 ~i~~~~ 167 (170)
T 1r2q_A 162 AIAKKL 167 (170)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 998654
No 14
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=4.3e-30 Score=194.86 Aligned_cols=169 Identities=51% Similarity=0.858 Sum_probs=154.8
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
..+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999998888888888877888888888999999999999888888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988777666789999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027703 170 VVIREIYSN 178 (220)
Q Consensus 170 ~l~~~~~~~ 178 (220)
+|.+.+.+.
T Consensus 164 ~l~~~i~~~ 172 (206)
T 2bcg_Y 164 TMARQIKES 172 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-29 Score=191.95 Aligned_cols=170 Identities=42% Similarity=0.764 Sum_probs=154.2
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
..+..+||+++|++|||||||+++|.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 44678999999999999999999999999988888888877777778888888999999999999988888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999888776666789999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027703 170 VVIREIYSNI 179 (220)
Q Consensus 170 ~l~~~~~~~~ 179 (220)
+|.+.+.+..
T Consensus 164 ~l~~~i~~~~ 173 (203)
T 1zbd_A 164 RLVDVICEKM 173 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=8e-30 Score=189.68 Aligned_cols=171 Identities=32% Similarity=0.476 Sum_probs=150.5
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
.++..+.+.+||+++|++|||||||++++.+..+...+.++.+... ...+..++..+.+.+||++|+..+...+..+++
T Consensus 10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 3345566789999999999999999999999999988888887665 567778888889999999999998888999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccC-CCCC
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSAL-DSTN 163 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~ 163 (220)
.++++++|||++++.+++.+..|+..+... .....|+++++||+|+...+.+..+++..++...+++++++||+ ++.|
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 999999999999999999999998887553 34568999999999998888899999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
++++|++|.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.8e-30 Score=190.73 Aligned_cols=166 Identities=41% Similarity=0.697 Sum_probs=143.3
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
.+..+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999999888888888777777788888889999999999988888888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++|+|+++..++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999988877655556899999999999877788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027703 171 VIREIY 176 (220)
Q Consensus 171 l~~~~~ 176 (220)
|.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=1.4e-29 Score=185.71 Aligned_cols=165 Identities=40% Similarity=0.711 Sum_probs=150.1
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....+||+++|++|||||||++++.+..+...+.++.+.......+.+.+..+.+.+||++|...+...+..+++.++++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999999888888888777777888888889999999999998888889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999998888776677899999999999877788888999999999999999999999999999999
Q ss_pred HHHHH
Q 027703 171 VIREI 175 (220)
Q Consensus 171 l~~~~ 175 (220)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98764
No 19
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.3e-31 Score=197.69 Aligned_cols=171 Identities=43% Similarity=0.768 Sum_probs=155.7
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
++..+..+||+++|++|||||||+++|.+..+...+.++.+.......+..++..+.+.+||++|+..+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 45567789999999999999999999999999888888887777777887888888999999999998888899999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+++++|+|++++.+++.+..|+..+........|+++++||+|+...+....+++..++...++.++++||+++.|+.++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999988876677999999999999887888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 168 FEVVIREIYSN 178 (220)
Q Consensus 168 ~~~l~~~~~~~ 178 (220)
|++|.+.+.+.
T Consensus 177 ~~~l~~~i~~~ 187 (191)
T 3dz8_A 177 FERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 20
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=193.82 Aligned_cols=170 Identities=37% Similarity=0.751 Sum_probs=144.8
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
+++.+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 45566789999999999999999999999998888888888887788888888889999999999999888889999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~ 166 (220)
+++++|+|+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++.. .++.++++||+++.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 9999999999999999999998888777666799999999999987778888888888887 478999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
++++|.+.+.+
T Consensus 180 l~~~l~~~i~~ 190 (192)
T 2il1_A 180 IFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 21
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=8.1e-30 Score=188.57 Aligned_cols=168 Identities=42% Similarity=0.704 Sum_probs=149.8
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
...+...+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..+
T Consensus 8 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 87 (179)
T 2y8e_A 8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 87 (179)
T ss_dssp ----CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTC
T ss_pred ccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 34455679999999999999999999999999988888888888888888888889999999999998888889999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+++++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 88 TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998877665567899999999999877788888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 168 FEVVIREI 175 (220)
Q Consensus 168 ~~~l~~~~ 175 (220)
+++|.+.+
T Consensus 168 ~~~l~~~~ 175 (179)
T 2y8e_A 168 FRRVAAAL 175 (179)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99998765
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9e-30 Score=191.18 Aligned_cols=171 Identities=41% Similarity=0.704 Sum_probs=150.5
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
.+++..+..+||+++|++|||||||+++|.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++
T Consensus 15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 35666778899999999999999999999999988888888887777777777888889999999999999888999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.++++++|+|++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 99999999999999999999999998887766678999999999997767788899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 166 AAFEVVIREIY 176 (220)
Q Consensus 166 ~l~~~l~~~~~ 176 (220)
+++++|.+.+.
T Consensus 175 ~l~~~l~~~i~ 185 (192)
T 2fg5_A 175 ELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 23
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.6e-29 Score=190.91 Aligned_cols=167 Identities=63% Similarity=1.026 Sum_probs=148.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
+..+|++++|++|||||||+++|.+..+...+.++.+.+...+.+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999999998888888888888889999999999999999999888878888889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|+|.++..++..+..|+..+........|+++++||.|+...+.+..+++++++.++++.++++|++++.++++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998888887766555568999999999998777888899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027703 172 IREIYSN 178 (220)
Q Consensus 172 ~~~~~~~ 178 (220)
.+.+.+.
T Consensus 163 ~~~~~~~ 169 (199)
T 2f9l_A 163 LTEIYRI 169 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 24
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=5.4e-30 Score=193.71 Aligned_cols=170 Identities=49% Similarity=0.794 Sum_probs=142.3
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 33466899999999999999999999999998888888887777778888888899999999999988888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
++++|+|++++.++..+..|+..+........|+++++||+|+...+.+...++..++...++.++++||+++.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999988877666678999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 169 EVVIREIYSN 178 (220)
Q Consensus 169 ~~l~~~~~~~ 178 (220)
++|.+.+.+.
T Consensus 180 ~~l~~~i~~~ 189 (200)
T 2o52_A 180 LKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 25
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.2e-29 Score=190.57 Aligned_cols=166 Identities=64% Similarity=1.036 Sum_probs=149.8
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
+.+..++++++|++|||||||+++|.+..++..+.+|++.+...+.+.+++..+.+.+||++|...+...+..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999999999999999988888999999998999999999998888888888899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|+|.++..+++.+..|+..+........|+++++||.|+...+.+..+++++++.++++.++|+|++++.++.++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999998999888888777655455688999999999987778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 027703 170 VVIREI 175 (220)
Q Consensus 170 ~l~~~~ 175 (220)
+|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 26
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2e-29 Score=184.82 Aligned_cols=163 Identities=47% Similarity=0.724 Sum_probs=147.3
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
+.+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999988888888877777788888888999999999999988889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC---CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI---RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
|+|++++.++..+..|+..+........|+++++||+|+... +.+..+++..++...+++++++||+++.|+.++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998887776667899999999998755 66778888899999999999999999999999999
Q ss_pred HHHHHH
Q 027703 170 VVIREI 175 (220)
Q Consensus 170 ~l~~~~ 175 (220)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 987643
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-29 Score=186.96 Aligned_cols=170 Identities=46% Similarity=0.743 Sum_probs=143.7
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
.+..+..+||+++|++|||||||++++.+..+. ..+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345577899999999999999999999999885 4566777777777777788888999999999999888888889999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|+|++++.+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999888776666789999999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
+++++.+.+.+
T Consensus 164 l~~~l~~~~~~ 174 (180)
T 2g6b_A 164 AFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 28
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=190.39 Aligned_cols=177 Identities=36% Similarity=0.529 Sum_probs=148.9
Q ss_pred CCCCCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh
Q 027703 1 MGKEERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT 80 (220)
Q Consensus 1 ~~~~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~ 80 (220)
|.......+.+...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 444555556667789999999999999999999999998888887776544 4566778888899999999999888888
Q ss_pred HHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccC
Q 027703 81 SAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSAL 159 (220)
Q Consensus 81 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (220)
..++..++++++|||+++..++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||+
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCC
Confidence 8999999999999999999999999999888776543 568999999999998777888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~~ 178 (220)
++.|+++++++|.+.+.+.
T Consensus 160 ~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999988763
No 29
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-30 Score=196.38 Aligned_cols=168 Identities=61% Similarity=0.982 Sum_probs=144.4
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 34678999999999999999999999999998888888887777888888888999999999999988888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+++|||++++.++..+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999988776666789999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
+|.+.+.+
T Consensus 169 ~l~~~i~~ 176 (223)
T 3cpj_B 169 ELINTIYQ 176 (223)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99988865
No 30
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=192.85 Aligned_cols=169 Identities=31% Similarity=0.385 Sum_probs=141.6
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-hhHHhhcCC
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-VTSAYYRGA 87 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~ 87 (220)
.++...+||+++|++|||||||++++.+..+.....++.+.+.....+.+++..+.+.+||++|+..+.. .+..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3445679999999999999999999987655444445555555667778888899999999999986654 667788899
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
+++++|||++++.+|..+..|+..+..... ...|+++++||+|+...+.+..+++..++...++.++++||+++.|+++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 999999999999999999999988776543 4689999999999987788888999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
+|+++.+.+.+
T Consensus 178 lf~~l~~~i~~ 188 (195)
T 3cbq_A 178 LFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 31
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=3.3e-29 Score=185.14 Aligned_cols=167 Identities=41% Similarity=0.728 Sum_probs=145.1
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
+++..+||+++|++|||||||++++.+..+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 46778999999999999999999999999988888888887777888888888999999999999988888899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-EEGLFFMETSALDSTNV 164 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 164 (220)
+++|+|+++..++..+..|+..+..... ...|+++++||+|+. .+....+++..++. ...++++++||+++.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999888765432 568999999999987 56778888888888 56789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYS 177 (220)
Q Consensus 165 ~~l~~~l~~~~~~ 177 (220)
+++++++.+.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987753
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.2e-29 Score=186.12 Aligned_cols=164 Identities=47% Similarity=0.833 Sum_probs=142.2
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999988888888877777778888888999999999999888888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|+|++++.++..+..|+..+........|+++++||+|+ ..+....+++..++...+++++++||+++.|+++++++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998888776667899999999998 4466778888999999999999999999999999999999
Q ss_pred HHHHH
Q 027703 173 REIYS 177 (220)
Q Consensus 173 ~~~~~ 177 (220)
+.+.+
T Consensus 161 ~~~~~ 165 (170)
T 1g16_A 161 KLIQE 165 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=2.2e-29 Score=186.55 Aligned_cols=169 Identities=32% Similarity=0.499 Sum_probs=148.7
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
..++...+||+++|++|||||||++++.+..+...+.+|.+.... ..+.+++..+.+.+||++|+..+...+..++..+
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 344566799999999999999999999999988888888776554 6677788888999999999998888888999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHH-hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELT-THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
+++++|+|+++..++..+..|+..+. .......|+++++||+|+...+.+..+++..+....++.++++||+++.|+++
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 99999999999999999999988874 34445789999999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
++++|.+.+.+
T Consensus 162 l~~~l~~~~~~ 172 (181)
T 2fn4_A 162 AFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1.1e-29 Score=186.04 Aligned_cols=164 Identities=35% Similarity=0.625 Sum_probs=147.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
+..+||+++|++|||||||+++|.+..+...+.+|.+.+.....+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999998888888887777788888888899999999999988888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|+|++++.+++.+..|+..+.... ...|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999988876554 468999999999998777788889999999999999999999999999999999
Q ss_pred HHHHH
Q 027703 172 IREIY 176 (220)
Q Consensus 172 ~~~~~ 176 (220)
.+.+.
T Consensus 162 ~~~~~ 166 (168)
T 1z2a_A 162 AEKHL 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.2e-29 Score=187.41 Aligned_cols=172 Identities=44% Similarity=0.775 Sum_probs=151.7
Q ss_pred CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703 5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY 84 (220)
Q Consensus 5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 84 (220)
+.+.......+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++
T Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (195)
T 1x3s_A 6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85 (195)
T ss_dssp ---CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH
T ss_pred CCcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh
Confidence 34455667789999999999999999999999999988888888887778888888889999999999998888899999
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
+.++++++|+|++++.++..+..|+..+.... ....|+++++||+|+. .+.+..+++..++...++.++++||+++.|
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 99999999999999999999999988876654 2568999999999984 356778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
+++++++|.+.+.+
T Consensus 165 i~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 165 VQCAFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988865
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=6.4e-29 Score=186.03 Aligned_cols=169 Identities=38% Similarity=0.691 Sum_probs=149.5
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee-EEEEEeCCe---------EEEEEEEecCCcchhhhh
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ-TQVVDIDGK---------EVKAQIWDTAGQERFRAV 79 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~-~~~i~~~~~---------~~~~~~~d~~g~~~~~~~ 79 (220)
+.+..+||+++|++|||||||+++|.+..+...+.+|.+.+.. ...+.+++. .+.+.+||++|+..+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4677899999999999999999999999998888888877665 455656655 789999999999998888
Q ss_pred hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703 80 TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA 158 (220)
Q Consensus 80 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (220)
+..+++.++++++|+|++++.++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999988776554 57899999999999877778888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 027703 159 LDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~~~ 178 (220)
+++.|+++++++|.+.+.+.
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=2.2e-29 Score=188.44 Aligned_cols=165 Identities=44% Similarity=0.758 Sum_probs=145.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh-hhhHHhhcCCcEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR-AVTSAYYRGAVGA 90 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~ 90 (220)
...+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+. ..+..+++.++++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 456999999999999999999999999998888888877777888888888999999999998887 7788899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC---CCHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS---TNVEA 166 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~ 166 (220)
++|+|+++..++..+..|+..+.... ....|+++++||+|+...+.+..+++..++...++.++++||+++ .++.+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999998877654 456899999999999877788889999999999999999999999 99999
Q ss_pred HHHHHHHHHH
Q 027703 167 AFEVVIREIY 176 (220)
Q Consensus 167 l~~~l~~~~~ 176 (220)
+|++|.+.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999987664
No 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.3e-29 Score=190.69 Aligned_cols=171 Identities=44% Similarity=0.809 Sum_probs=148.8
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
.....+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..
T Consensus 13 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (213)
T 3cph_A 13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92 (213)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT
T ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 34455667999999999999999999999999988888888877777788888888999999999999888888999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|+|++++.++..+..|+..+........|+++++||+|+ ..+....+++..++...+++++++||+++.|+.+
T Consensus 93 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999998887766667899999999998 4567778888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 167 AFEVVIREIYSN 178 (220)
Q Consensus 167 l~~~l~~~~~~~ 178 (220)
++++|.+.+.+.
T Consensus 172 l~~~l~~~~~~~ 183 (213)
T 3cph_A 172 IFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=9.2e-30 Score=188.34 Aligned_cols=167 Identities=34% Similarity=0.517 Sum_probs=145.2
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-eEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-KEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
+...+||+++|++|||||||++++.+..+...+.+|.+.+.....+.+++ ..+.+.+||++|+..+...+..+++.+++
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34569999999999999999999999988877778887777777787776 57899999999999988889999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
+++|+|++++.+++.+..|+..+.... ...+|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999988888876532 13344789999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
++++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 40
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=9.5e-30 Score=192.10 Aligned_cols=169 Identities=41% Similarity=0.674 Sum_probs=137.3
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
.......+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 34455679999999999999999999999998888888887777777888888889999999999998888888999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC------CCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD------SIRDVSTEEGKSLAEEEGLFFMETSALDS 161 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (220)
+++++|+|+++..++..+..|+..+........|+++++||+|+. ..+.+..+++..++...+++++++||+++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 999999999999999999999988877665678999999999985 35677888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIY 176 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~ 176 (220)
.|+.+++++|.+.+.
T Consensus 182 ~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 182 SNIVEAVLHLAREVK 196 (199)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 41
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.6e-29 Score=185.48 Aligned_cols=164 Identities=30% Similarity=0.380 Sum_probs=132.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-hhHHhhcCCcEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-VTSAYYRGAVGALV 92 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~ 92 (220)
.+||+++|++|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+.. .+..+++.++++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998887777777767777777888899899999999999987765 56667888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|||++++.++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998776544 468999999999998778899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 027703 172 IREIYS 177 (220)
Q Consensus 172 ~~~~~~ 177 (220)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 42
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=2.7e-29 Score=186.46 Aligned_cols=166 Identities=33% Similarity=0.463 Sum_probs=148.0
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
+...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34679999999999999999999999999888888887666 66777888889999999999998888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
++|+|++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|+.++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999988876543 35689999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
+|.+.+..
T Consensus 162 ~l~~~~~~ 169 (181)
T 3t5g_A 162 RIILEAEK 169 (181)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988764
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.8e-29 Score=192.84 Aligned_cols=172 Identities=26% Similarity=0.471 Sum_probs=144.0
Q ss_pred CCCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHh
Q 027703 4 EERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAY 83 (220)
Q Consensus 4 ~~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~ 83 (220)
+.+.++.....+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+
T Consensus 17 q~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 95 (214)
T 3q3j_B 17 QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLC 95 (214)
T ss_dssp ----------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHH
Confidence 345566667789999999999999999999999999988888887665 4566677888999999999999999999999
Q ss_pred hcCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC
Q 027703 84 YRGAVGALVVYDITRRSSFDS-VKRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG 150 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~ 150 (220)
++.++++++|||++++.++.. +..|+..+.... ...|+++++||+|+... +.+..+++..++...+
T Consensus 96 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 96 YSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 999999999999999999999 688888887764 46899999999998753 6788999999999999
Q ss_pred C-eEEEeccCCCCC-HHHHHHHHHHHHHH
Q 027703 151 L-FFMETSALDSTN-VEAAFEVVIREIYS 177 (220)
Q Consensus 151 ~-~~~~~Sa~~~~~-v~~l~~~l~~~~~~ 177 (220)
+ .++++||+++.| ++++|+++.+.+.+
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 9 999999999998 99999999988764
No 44
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=188.60 Aligned_cols=165 Identities=31% Similarity=0.469 Sum_probs=140.2
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
++...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+... ..+++.+++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345579999999999999999999999999888888877554 355677888899999999999877664 568899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc-CCCCCHH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA-LDSTNVE 165 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~ 165 (220)
+++|||++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...++.++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999998876553 246899999999999877888899999999999999999999 8999999
Q ss_pred HHHHHHHHHHH
Q 027703 166 AAFEVVIREIY 176 (220)
Q Consensus 166 ~l~~~l~~~~~ 176 (220)
++|++|.+.+.
T Consensus 175 ~lf~~l~~~i~ 185 (187)
T 3c5c_A 175 HVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=7.8e-29 Score=185.04 Aligned_cols=164 Identities=20% Similarity=0.282 Sum_probs=141.0
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
...+...+||+++|++|||||||++++.+..+...+.+|.+ .....+.+++..+.+.+||++|+..+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 44556689999999999999999999999999888877743 234677888989999999999987665 77789
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCC--CCCCCCCHHHHHHHHHHhC-CeEEEeccCCCCC
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDL--DSIRDVSTEEGKSLAEEEG-LFFMETSALDSTN 163 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 163 (220)
+++++|||++++.+|+.+..|+..+..... ...|+++++||+|+ ...+.+..+++..++...+ +.++++||+++.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999877643 56899999999998 3567788899999999986 8999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYSN 178 (220)
Q Consensus 164 v~~l~~~l~~~~~~~ 178 (220)
++++|+++.+.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=8.1e-29 Score=186.14 Aligned_cols=171 Identities=29% Similarity=0.508 Sum_probs=144.7
Q ss_pred CCCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh
Q 027703 5 ERGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY 84 (220)
Q Consensus 5 ~~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 84 (220)
..........+||+++|++|||||||++++.+..+...+.+|.+.... ..+.+++..+.+.+||++|+..+...+..++
T Consensus 14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 92 (194)
T 3reg_A 14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92 (194)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence 334455667899999999999999999999999998888888876554 4667788889999999999999999999999
Q ss_pred cCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC--CCCCHHHHHHHHHHhCCe-EEEeccCC
Q 027703 85 RGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI--RDVSTEEGKSLAEEEGLF-FMETSALD 160 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 160 (220)
+.++++++|+|++++.++..+ ..|+..+.... ...|+++++||+|+... +.+..+++..++...++. ++++||++
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 999999999999999999997 56777776553 46899999999998743 678889999999999998 99999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~ 177 (220)
+.|++++|++|.+.+.+
T Consensus 172 ~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TBSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=6.1e-29 Score=188.39 Aligned_cols=168 Identities=36% Similarity=0.669 Sum_probs=146.6
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.+...+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45678999999999999999999999999998888888888888888888888999999999999888888889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-HhCCeEEEeccCCCCCH
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-EEGLFFMETSALDSTNV 164 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 164 (220)
+++|+|++++.++..+..|+..+..... ...|+++++||+|+. .+....+++..+.. ..+++++++||+++.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999888665432 468999999999987 45667788888887 67789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYSN 178 (220)
Q Consensus 165 ~~l~~~l~~~~~~~ 178 (220)
++++++|.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 163 EQAFQTIARNALKQ 176 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 48
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=3.1e-29 Score=191.59 Aligned_cols=173 Identities=37% Similarity=0.702 Sum_probs=149.1
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe----------EEEEEEEecCCcchhh
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK----------EVKAQIWDTAGQERFR 77 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~----------~~~~~~~d~~g~~~~~ 77 (220)
.+..+..+||+++|++|||||||+++|.+..+...+.+|.+.+.....+.+++. .+.+.+||++|+..+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 344567899999999999999999999999988777788777666666766665 7889999999999888
Q ss_pred hhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEe
Q 027703 78 AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMET 156 (220)
Q Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (220)
..+..+++.++++++|+|+++..++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...++.++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 8899999999999999999999999999888877654433 568999999999998777788889999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhh
Q 027703 157 SALDSTNVEAAFEVVIREIYSNIS 180 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~~~~ 180 (220)
||+++.|+++++++|.+.+.+...
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876543
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=3.4e-29 Score=185.67 Aligned_cols=168 Identities=38% Similarity=0.672 Sum_probs=132.8
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
.+...+||+++|++|||||||++++.+..+...+.++.+.+.....+.++ +..+.+.+||++|+..+...+..+++.++
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45667999999999999999999999999988888888877777777776 55688999999999988888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCC----CCCcEEEEEecCCCC-CCCCCCHHHHHHHHH-HhCCeEEEeccCCCC
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCD----TAVGRMLVGNKCDLD-SIRDVSTEEGKSLAE-EEGLFFMETSALDST 162 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~v~~k~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (220)
++++|+|+++..++..+..|+..+..... ...|+++++||+|+. ..+.+..+++..++. ..+++++++||+++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999888765432 568999999999985 335567888888887 567899999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|+++++++|.+.+.+
T Consensus 164 gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 164 NVDTAFEEIARSALQ 178 (182)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988765
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=181.75 Aligned_cols=164 Identities=32% Similarity=0.451 Sum_probs=132.2
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch--hhhhhHHhhcCCcEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--FRAVTSAYYRGAVGA 90 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--~~~~~~~~~~~~~~~ 90 (220)
..+||+++|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||++|+.. +......+++.++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46899999999999999999999998766544 344455566777888888999999999876 455667788999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 169 (220)
++|||++++.++..+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|++++++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999999988876653 34689999999999987788888888899988999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 170 VVIREIYS 177 (220)
Q Consensus 170 ~l~~~~~~ 177 (220)
+|.+.+.+
T Consensus 162 ~l~~~~~~ 169 (175)
T 2nzj_A 162 GVVRQLRL 169 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1.3e-28 Score=183.26 Aligned_cols=170 Identities=36% Similarity=0.530 Sum_probs=146.4
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
++.....+||+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 33445679999999999999999999999998888877776544 45567788888999999999998888889999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
+++++|||+++..++..+..|+..+..... ...|+++++||+|+...+.+..+++..++...+++++++||+++.|+++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 999999999999999999999888766543 4689999999999987778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 167 AFEVVIREIYSN 178 (220)
Q Consensus 167 l~~~l~~~~~~~ 178 (220)
++++|.+.+.+.
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=1.4e-28 Score=179.83 Aligned_cols=162 Identities=37% Similarity=0.562 Sum_probs=141.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998888877776544 35567788888999999999998888889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
+|++++.++..+..|+..+..... ...|+++++||+|+...+....+++..++...+++++++||+++.|++++++++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 999999999999999888766543 4689999999999987778888999999999999999999999999999999999
Q ss_pred HHHH
Q 027703 173 REIY 176 (220)
Q Consensus 173 ~~~~ 176 (220)
+.+.
T Consensus 163 ~~i~ 166 (168)
T 1u8z_A 163 REIR 166 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-28 Score=183.92 Aligned_cols=166 Identities=30% Similarity=0.507 Sum_probs=143.7
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
.++...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 3456789999999999999999999999998888888876543 456667778889999999999988888889999999
Q ss_pred EEEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEE
Q 027703 89 GALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFM 154 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~ 154 (220)
++++|||++++.++..+. .|+..+..... ..|+++++||+|+... +.+..+++..++...+. .++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999987 68777776543 6899999999998753 46778889999999887 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
++||+++.|++++|++|.+.+.
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=3.1e-28 Score=183.68 Aligned_cols=164 Identities=38% Similarity=0.677 Sum_probs=144.1
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE-----------------------------
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE----------------------------- 62 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~----------------------------- 62 (220)
+..+||+++|++|||||||+++|.+..+...+.+|.+.......+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456999999999999999999999999998888888777776677666644
Q ss_pred --------EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 63 --------VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 63 --------~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
+.+.+||++|+..+...+..+++.++++++|+|++++.++..+..|+..+..... .|+++++||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 7899999999998888889999999999999999999999999999888876543 89999999999 555
Q ss_pred CCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703 135 RDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 178 (220)
+....+++..++...+++++++||+++.|+.+++++|.+.+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 67888999999999999999999999999999999999887653
No 55
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=2e-28 Score=179.10 Aligned_cols=161 Identities=34% Similarity=0.549 Sum_probs=141.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998888888876544 35566777888999999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|++++.++..+..|+..+.... ....|+++++||+|+...+.+..+++..++... +.+++++||+++.|+++++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988876543 356899999999999877778888898998887 7899999999999999999999
Q ss_pred HHHH
Q 027703 172 IREI 175 (220)
Q Consensus 172 ~~~~ 175 (220)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 56
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=6.3e-29 Score=187.87 Aligned_cols=165 Identities=33% Similarity=0.510 Sum_probs=142.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||+++|.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999999988888877655 556666777789999999999988888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
+|||++++.++..+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998876543 346899999999999888888999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027703 171 VIREIYS 177 (220)
Q Consensus 171 l~~~~~~ 177 (220)
|.+.+.+
T Consensus 181 l~~~i~~ 187 (201)
T 3oes_A 181 VIQEIAR 187 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 57
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2e-28 Score=186.56 Aligned_cols=167 Identities=29% Similarity=0.391 Sum_probs=136.0
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcC--CCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-hhhhhHHhhcC
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEF--DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRAVTSAYYRG 86 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~ 86 (220)
.....+||+++|++|||||||++++.+... ...+ ++.+.+.....+.+++..+.+.+||+.|+.. +......+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 445679999999999999999999997543 3333 3344455566777888889999999999876 44455667888
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
++++++|||+++..+|+.+..|+..+.... ....|++++|||+|+...+.+..+++..++...+++++++||+++.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988776532 3468999999999998777888888888888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYS 177 (220)
Q Consensus 166 ~l~~~l~~~~~~ 177 (220)
++|++|.+.+..
T Consensus 192 elf~~l~~~i~~ 203 (211)
T 2g3y_A 192 ELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.4e-28 Score=179.91 Aligned_cols=162 Identities=31% Similarity=0.417 Sum_probs=121.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+.... ++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999987665433 2333222 35567788889999999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
||++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998876643 35689999999999988888999999999999999999999999999999999999
Q ss_pred HHHHH
Q 027703 173 REIYS 177 (220)
Q Consensus 173 ~~~~~ 177 (220)
+.+.+
T Consensus 160 ~~~~~ 164 (166)
T 3q72_A 160 RQIRL 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=184.05 Aligned_cols=165 Identities=36% Similarity=0.459 Sum_probs=144.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+.. ...+..+++.+++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999999888888876544 45567788889999999999887 667788889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC-CHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST-NVEAAFE 169 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~ 169 (220)
+|||++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++. |+.++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999988876543 3578999999999998777888899999999999999999999999 9999999
Q ss_pred HHHHHHHHH
Q 027703 170 VVIREIYSN 178 (220)
Q Consensus 170 ~l~~~~~~~ 178 (220)
+|.+.+.+.
T Consensus 184 ~l~~~i~~~ 192 (196)
T 2atv_A 184 ELCREVRRR 192 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999888754
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=1.9e-28 Score=178.93 Aligned_cols=162 Identities=35% Similarity=0.545 Sum_probs=143.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998888877765433 56677788888999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
+|++++.+++.+..|+..+.... ....|+++++||+|+...+.+..+++..++...+++++++||+++.|+++++++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 99999999999999988876543 35689999999999987778888899999999999999999999999999999998
Q ss_pred HHHH
Q 027703 173 REIY 176 (220)
Q Consensus 173 ~~~~ 176 (220)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 61
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=184.48 Aligned_cols=171 Identities=34% Similarity=0.541 Sum_probs=135.6
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
+........+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..++.
T Consensus 12 ~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 90 (201)
T 2q3h_A 12 RAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT 90 (201)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred ccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence 3445667789999999999999999999999988888877775443 456777888889999999999988888888999
Q ss_pred CCcEEEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhCC-
Q 027703 86 GAVGALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEGL- 151 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~~- 151 (220)
.++++++|||++++.++..+. .|+..+..... ..|+++++||+|+.. .+.+..+++..++...+.
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 999999999999999999987 68877776543 689999999999865 356778889999988887
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 178 (220)
.++++||+++.|++++|++|.+.+.+.
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 899999999999999999999888653
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=3.3e-28 Score=180.13 Aligned_cols=159 Identities=22% Similarity=0.329 Sum_probs=134.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
.+.+||+++|++|||||||++++.+..+.. +.+|.+.. ....+.+++..+.+.+||++|+.. ..+++.+++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 356999999999999999999999999886 66676533 356677888889999999999875 45778899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhh---CCCCCcEEEEEecCCCC--CCCCCCHHHHHHHHHHh-CCeEEEeccCCCCCHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTH---CDTAVGRMLVGNKCDLD--SIRDVSTEEGKSLAEEE-GLFFMETSALDSTNVE 165 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~v~~k~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~ 165 (220)
+|||++++.++..+..|+..+... .....|+++++||+|+. ..+.+..+++..++... +++++++||+++.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999999876655433 23568999999999983 45678888898888876 6899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYS 177 (220)
Q Consensus 166 ~l~~~l~~~~~~ 177 (220)
++|+++.+.+.+
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988865
No 63
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=4.1e-29 Score=189.28 Aligned_cols=167 Identities=30% Similarity=0.478 Sum_probs=110.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhC--cCCCCCcccceeeeeEEEEEeCCe--EEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEFQTQVVDIDGK--EVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~~~t~~~~~~~~~i~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
...+||+++|++|||||||+++|.+. .+...+.+|.+.+.....+.+++. .+.+.+||++|+..+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999999 788788888776667777878776 78999999999998888888899999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCC-CCCCCHHHHHHHHHHhCCeEEEeccCC-CC
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDS-IRDVSTEEGKSLAEEEGLFFMETSALD-ST 162 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 162 (220)
+++++|+|++++.++..+..|+..+..... ...|+++++||+|+.. .+.+..+++..++...++.++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998877665 5789999999999987 678888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYSN 178 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~~ 178 (220)
|+.++|++|.+.+.+.
T Consensus 178 gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 178 DADAPFLSIATTFYRN 193 (208)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988653
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=2.3e-28 Score=182.22 Aligned_cols=165 Identities=32% Similarity=0.555 Sum_probs=140.5
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.++..+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..++..+++
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 356679999999999999999999999999888888876554 3566778888999999999999888888889999999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhC-CeEEE
Q 027703 90 ALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEG-LFFME 155 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 155 (220)
+++|||++++.++..+ ..|+..+.... ...|+++++||+|+... +.+..+++..++...+ +.+++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 67877776654 46899999999998642 5678888999998877 78999
Q ss_pred eccC-CCCCHHHHHHHHHHHHH
Q 027703 156 TSAL-DSTNVEAAFEVVIREIY 176 (220)
Q Consensus 156 ~Sa~-~~~~v~~l~~~l~~~~~ 176 (220)
+||+ ++.|++++|+++.+.+.
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHHHh
Confidence 9999 68999999999988764
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=1.9e-27 Score=177.38 Aligned_cols=165 Identities=36% Similarity=0.533 Sum_probs=142.6
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||+++|.+..+...+.++.+. .....+.+++..+.+.+||++|+..+...+..++..++++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 5699999999999999999999999988888777643 344666778888899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
|+|+++..++..+..|+..+.... ....|+++++||+|+. .+....+++..++...+++++++||+++.|+.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999988876643 3568999999999986 46678888999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027703 172 IREIYSNI 179 (220)
Q Consensus 172 ~~~~~~~~ 179 (220)
.+.+.+..
T Consensus 161 ~~~~~~~~ 168 (189)
T 4dsu_A 161 VREIRKHK 168 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99887643
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=2.9e-28 Score=185.02 Aligned_cols=168 Identities=32% Similarity=0.548 Sum_probs=141.3
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
.......+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 33456679999999999999999999999999888888876554 45566778889999999999998888888899999
Q ss_pred cEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCC------------CCCCCHHHHHHHHHHhC-CeE
Q 027703 88 VGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDS------------IRDVSTEEGKSLAEEEG-LFF 153 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~------------~~~~~~~~~~~~~~~~~-~~~ 153 (220)
+++++|||++++.+|..+ ..|+..+.... ...|+++++||+|+.. .+.+..+++..++...+ +.+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999999998 67888776654 4689999999999864 25678888999998877 689
Q ss_pred EEeccC-CCCCHHHHHHHHHHHHHH
Q 027703 154 METSAL-DSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 154 ~~~Sa~-~~~~v~~l~~~l~~~~~~ 177 (220)
+++||+ ++.|++++|++|.+.+.+
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999987653
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.96 E-value=7.4e-29 Score=189.64 Aligned_cols=174 Identities=28% Similarity=0.454 Sum_probs=145.4
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
..+...+||+++|++|||||||+++|.+..+...+.++.+.......+... +..+.+.+||++|+..+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 445678999999999999999999999998887777777766665555443 3448899999999998888889999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
+++++|+|+++..++..+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999999887766666899999999999877788888888888889999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 027703 168 FEVVIREIYSNISRK 182 (220)
Q Consensus 168 ~~~l~~~~~~~~~~~ 182 (220)
+++|.+.+.+.....
T Consensus 166 ~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 166 FLHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhcccccc
Confidence 999999887654433
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1.3e-27 Score=180.73 Aligned_cols=168 Identities=30% Similarity=0.512 Sum_probs=141.7
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
+...+...+||+++|++|||||||++++.+..+...+.++.+.... ..+.+++..+.+.+||++|+..+...+..+++.
T Consensus 18 ~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 96 (201)
T 2gco_A 18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD 96 (201)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred CCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence 3445566799999999999999999999999998888888765554 446778888899999999999888888889999
Q ss_pred CcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-e
Q 027703 87 AVGALVVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-F 152 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 152 (220)
++++++|||++++.++..+ ..|+..+.... ...|+++++||+|+... +.+..+++..++...+. .
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 9999999999999999998 56777666544 36899999999998754 45778888899988888 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q 027703 153 FMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 153 ~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
++++||+++.|+++++++|.+.+.
T Consensus 176 ~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 176 YLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=2.1e-27 Score=176.74 Aligned_cols=162 Identities=31% Similarity=0.564 Sum_probs=140.6
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..++++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 469999999999999999999999998888777775433 4556778888999999999999888888889999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEecc
Q 027703 93 VYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSA 158 (220)
Q Consensus 93 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (220)
|+|++++.++..+. .|+..+..... ..|+++++||+|+... +.+..+++..++...+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 67777766544 6899999999998653 56778888899998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027703 159 LDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~~~ 176 (220)
+++.|++++++++.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHh
Confidence 999999999999988764
No 70
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.8e-30 Score=196.08 Aligned_cols=169 Identities=50% Similarity=0.849 Sum_probs=141.4
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCC
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGA 87 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 87 (220)
+...+..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 33456789999999999999999999999998888888888888888888898889999999999998888888899999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
|++++|+|+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999887776667999999999999877777777788899999999999999999999999
Q ss_pred HHHHHHHHH
Q 027703 168 FEVVIREIY 176 (220)
Q Consensus 168 ~~~l~~~~~ 176 (220)
|++|.+.+.
T Consensus 187 ~~~l~~~l~ 195 (199)
T 3l0i_B 187 FMTMAAEIK 195 (199)
T ss_dssp HHHHTTTTT
T ss_pred HHHHHHHHH
Confidence 999987654
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=9.7e-28 Score=183.18 Aligned_cols=164 Identities=32% Similarity=0.534 Sum_probs=122.3
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||+++|.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999999988887777765433 456677888899999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEec
Q 027703 92 VVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETS 157 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 157 (220)
+|||++++.++..+. .|+..+.... ...|+++++||+|+... +.+..+++..++...++ .++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 6777776654 46899999999998754 36777888999999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027703 158 ALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~ 177 (220)
|+++.|++++|++|.+.+.+
T Consensus 190 A~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988865
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-27 Score=174.60 Aligned_cols=162 Identities=31% Similarity=0.442 Sum_probs=139.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.++.+... ...+..++..+.+.+||++|+..+...+..++..++++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 58999999999999999999999988877777765443 34456677788999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVV 171 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 171 (220)
+|++++.+++.+..|+..+..... ...|+++++||+|+...+.+..+++..+....+++++++||+++.|+++++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence 999999999999888887765432 468999999999998777888888889999999999999999999999999999
Q ss_pred HHHHH
Q 027703 172 IREIY 176 (220)
Q Consensus 172 ~~~~~ 176 (220)
.+.+.
T Consensus 162 ~~~~~ 166 (172)
T 2erx_A 162 LNLEK 166 (172)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 87553
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=6.2e-27 Score=175.09 Aligned_cols=164 Identities=37% Similarity=0.559 Sum_probs=133.4
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
-..+||+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3569999999999999999999999988887777765433 456677888889999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
+|+|+++..++..+..|+..+..... ...|+++++||+|+.. +....+++..++...+++++++|++++.|+.+++++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999889888765543 4689999999999875 667788899999999999999999999999999999
Q ss_pred HHHHHHH
Q 027703 171 VIREIYS 177 (220)
Q Consensus 171 l~~~~~~ 177 (220)
|.+.+.+
T Consensus 177 l~~~~~~ 183 (190)
T 3con_A 177 LVREIRQ 183 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=4.8e-28 Score=181.77 Aligned_cols=167 Identities=22% Similarity=0.268 Sum_probs=135.0
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC-----------CcccceeeeeEEEE-EeCCeEEEEEEEecCCcch
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN-----------SKATIGVEFQTQVV-DIDGKEVKAQIWDTAGQER 75 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~-----------~~~t~~~~~~~~~i-~~~~~~~~~~~~d~~g~~~ 75 (220)
...++..+||+++|++|||||||++.+.+.. ... ..+|.+.+.....+ .+++..+.+.+||++|+..
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3456788999999999999999998887653 333 23344444443334 4566788999999999999
Q ss_pred hhhhhHHhhcCCcEEEEEEeCC------CcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh
Q 027703 76 FRAVTSAYYRGAVGALVVYDIT------RRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE 149 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~ 149 (220)
+...+..+++.++++++|+|++ +..++..+..|+..+. ......|+++++||+|+.. ....+++..++...
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPE 163 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhc
Confidence 9999999999999999999999 4566777777776662 2235689999999999875 47888999999999
Q ss_pred CC-eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703 150 GL-FFMETSALDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 150 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 178 (220)
++ .++++||+++.|++++|++|.+.+.+.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999988764
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=6.4e-27 Score=170.52 Aligned_cols=161 Identities=36% Similarity=0.564 Sum_probs=140.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+||++|+..+...+..++..++++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999988887777765433 45666788888999999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCC-CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCD-TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
+|+++..++..+..|+..+..... ...|+++++||+|+.. +....+++..+....+++++++|++++.|+.+++++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999889888765543 4689999999999875 56778888999999999999999999999999999999
Q ss_pred HHHH
Q 027703 173 REIY 176 (220)
Q Consensus 173 ~~~~ 176 (220)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2e-27 Score=178.91 Aligned_cols=164 Identities=29% Similarity=0.422 Sum_probs=140.3
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....+||+++|++|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||++|+..+...+..++..++++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34569999999999999999999999998887777766433 34456677888999999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
++|||++++.++..+..|+..+..... ...|+++++||+|+.. +....+++..++...++.++++||+++.|+++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999998888877655432 3579999999999865 5677888889999999999999999999999999
Q ss_pred HHHHHHHH
Q 027703 169 EVVIREIY 176 (220)
Q Consensus 169 ~~l~~~~~ 176 (220)
++|.+.+.
T Consensus 163 ~~l~~~~~ 170 (199)
T 2gf0_A 163 QELLTLET 170 (199)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHHh
Confidence 99987654
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=3.8e-27 Score=177.03 Aligned_cols=165 Identities=30% Similarity=0.410 Sum_probs=132.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCc--CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-hhhhhHHhhcCCc
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-FRAVTSAYYRGAV 88 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~ 88 (220)
...+||+++|++|||||||++++.+.. +...+. +.+.+.....+.+++..+.+.+||+.|... .......+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 346999999999999999999999643 333333 344455566777888888999999999765 3445666788899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 167 (220)
++++|||+++..+|+.+..|+..+.... ....|+++++||+|+...+.+..+++..++...++.++++||+++.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999888776543 346899999999999766778888888888888899999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|+++.+.+..
T Consensus 163 f~~l~~~~~~ 172 (192)
T 2cjw_A 163 FEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 78
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1e-27 Score=182.58 Aligned_cols=164 Identities=30% Similarity=0.557 Sum_probs=140.0
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999999888888876444 456667888899999999999988888888999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCC--------CCHHHHHHHHHHhCC-eEEEeccCCC
Q 027703 92 VVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRD--------VSTEEGKSLAEEEGL-FFMETSALDS 161 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (220)
+|||++++.++..+. .|+..+..... ..|+++++||+|+...+. +..+++..++...+. .++++||+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999987 68888776543 689999999999865433 367888889888886 8999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIYS 177 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~~ 177 (220)
.|++++|++|.+.+.+
T Consensus 165 ~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988764
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.8e-27 Score=176.64 Aligned_cols=164 Identities=30% Similarity=0.512 Sum_probs=134.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++.+..+...+.++.+.... ..+.+++..+.+.+||++|+..+...+..++..+++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34689999999999999999999999998887777765543 34677888889999999999988888888999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEec
Q 027703 92 VVYDITRRSSFDSV-KRWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETS 157 (220)
Q Consensus 92 ~v~d~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 157 (220)
+|+|++++.++..+ ..|+..+.... ...|+++++||+|+... +.+..+++..++...+. .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 56777776643 46899999999998654 45777888889888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 027703 158 ALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~ 177 (220)
|+++.|+++++++|.+.+.+
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=1.9e-27 Score=180.21 Aligned_cols=163 Identities=31% Similarity=0.515 Sum_probs=136.3
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.....+||+++|++|||||||++++.+..+...+.++.+. .....+.+++..+.+.+||++|+..+...+..+++.+++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3455799999999999999999999999988888777753 345566778888999999999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhCC-eEEE
Q 027703 90 ALVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEGL-FFME 155 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~ 155 (220)
+++|+|++++.++..+. .|+..+.... ...|+++++||+|+...+ .+..+++..++...+. ++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999997 6777776654 568999999999986543 3777888889988886 5999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 027703 156 TSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~ 174 (220)
+||+++.|++++|+++.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999864
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.1e-27 Score=183.64 Aligned_cols=171 Identities=29% Similarity=0.557 Sum_probs=147.2
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG 86 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 86 (220)
....+...+||+++|++|||||||+++++...+...+.++.+.......+.+++..+.+.+||++|+..+...+..+++.
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34556678999999999999999999988888777777888777777788888888999999999999988889999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
++++++|+|+++..++..+..|+..+.... ...|+++++||+|+..... ..++..++...++.++++||+++.|+.+
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999998887764 3689999999999875332 2255577788899999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027703 167 AFEVVIREIYSNIS 180 (220)
Q Consensus 167 l~~~l~~~~~~~~~ 180 (220)
+|++|.+.+.....
T Consensus 165 l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 165 PFLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCcc
Confidence 99999998876433
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=6.4e-28 Score=178.99 Aligned_cols=161 Identities=32% Similarity=0.560 Sum_probs=123.6
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+...+.+|.+.... ..+.+++..+.+.+||++|+..+...+..+++.++++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4589999999999999999999999888877777653332 334456667888899999999988888999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCCC----------CCHHHHHHHHHHhCC-eEEEeccCC
Q 027703 93 VYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIRD----------VSTEEGKSLAEEEGL-FFMETSALD 160 (220)
Q Consensus 93 v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (220)
|+|++++.++..+. .|+..+..... ..|+++++||+|+...+. +..+++..++...+. +++++||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999987 58777776543 689999999999865433 467888889988886 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREI 175 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~ 175 (220)
+.|++++|++|.+.+
T Consensus 165 ~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 165 QENVKGVFDAAIRVV 179 (182)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=2.4e-27 Score=178.44 Aligned_cols=165 Identities=19% Similarity=0.312 Sum_probs=126.9
Q ss_pred CCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 7 GGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 7 ~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
+..++.+.+||+|+|++|||||||+++|.+..+.. .+.+|.+.... .+. +..+.+.+||++|+..+...+..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 45566678999999999999999999999999888 77777774333 333 34578999999999999999999999
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCC--------CCCcEEEEEecCCCCCCCCCCHHHHHHH------HHHhCC
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCD--------TAVGRMLVGNKCDLDSIRDVSTEEGKSL------AEEEGL 151 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~v~~k~Dl~~~~~~~~~~~~~~------~~~~~~ 151 (220)
.++++++|+|+++..+|..+..|+..+..... ...|+++++||+|+.... ..++.... +...++
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCE
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCee
Confidence 99999999999999999999988888654311 268999999999987542 23322111 134567
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
.++++||+++.|++++|++|.+.+.+
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 89999999999999999999998865
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=3.8e-26 Score=170.81 Aligned_cols=158 Identities=20% Similarity=0.369 Sum_probs=126.5
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||+++|.+..+...+.+|.+.... .+.. ..+.+.+||++|+..+...+..++..++++++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 3699999999999999999999999988777777765443 3333 34788999999999988889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 166 (220)
|+|+++..++..+..|+..+.... ....|+++++||+|+... ...++...... ..++.++++||+++.|+++
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 999999999999998888865532 256899999999998653 23333222211 2245789999999999999
Q ss_pred HHHHHHHHHH
Q 027703 167 AFEVVIREIY 176 (220)
Q Consensus 167 l~~~l~~~~~ 176 (220)
++++|.+.+.
T Consensus 175 l~~~l~~~~~ 184 (188)
T 1zd9_A 175 TLQWLIQHSK 184 (188)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=1.9e-26 Score=173.99 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=120.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+. .+.+|.+.. .+.+.+++ +.+.+||++|+..+...+..+++.++++++|
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999998775 345555443 45666666 7889999999998888888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------hCCeEEE
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----------------EGLFFME 155 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 155 (220)
+|++++.+|..+..|+..+.... ....|+++++||+|+.. ....+++...+.. ..+.+++
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence 99999999999999988876542 35689999999999875 5677777776653 2457999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 027703 156 TSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~ 174 (220)
+||+++.|++++|++|.+.
T Consensus 178 ~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 178 CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998754
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=5.4e-26 Score=170.39 Aligned_cols=155 Identities=20% Similarity=0.239 Sum_probs=126.3
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+. .+.+|.+. ....+.+++ +.+.+||++|+..+...+..+++.++++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999998875 34555544 355666766 788999999999888888889999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH------------hCCeEEEeccC
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE------------EGLFFMETSAL 159 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 159 (220)
|+|++++.+|+.+..|+..+.... ....|+++++||+|+.. ....+++...+.. .++.++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999988876532 35689999999999875 5566666665443 34579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIRE 174 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~ 174 (220)
++.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998753
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.94 E-value=7.2e-26 Score=169.42 Aligned_cols=160 Identities=19% Similarity=0.321 Sum_probs=128.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCc-CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNE-FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
...+||+++|++|||||||+++|.+.. +...+.+|.+. ....+.+++ +.+.+||++|+..+...+..++..++++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 346999999999999999999999987 56666677653 344555554 6889999999999888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCC---CCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCC
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCD---TAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDST 162 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 162 (220)
++|+|+++..++..+..|+..+..... ...|+++++||+|+.. ....++....+. ..++.++++||+++.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999888888765432 4689999999999864 345566555553 235689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|+++++++|.+.+.+
T Consensus 173 gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 173 GLQEGVDWLQDQIQT 187 (190)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887653
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=9.7e-27 Score=169.80 Aligned_cols=156 Identities=19% Similarity=0.362 Sum_probs=121.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEE
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 94 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 94 (220)
+||+++|++|||||||++++.+..+.. +.+|.+. ....+.. ..+.+.+||++|+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 4556553 3334444 3468899999999998888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHHHH
Q 027703 95 DITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 95 d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 168 (220)
|++++.++..+..|+..+... .....|+++++||+|+... ....+...... ..+++++++||+++.|+++++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888876543 2346899999999998653 23333222211 124568999999999999999
Q ss_pred HHHHHHHHH
Q 027703 169 EVVIREIYS 177 (220)
Q Consensus 169 ~~l~~~~~~ 177 (220)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887653
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.94 E-value=2.1e-25 Score=166.23 Aligned_cols=160 Identities=21% Similarity=0.365 Sum_probs=128.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++.+.. ...+.+|.+.. ...+.+++ +.+.+||++|+..+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999988 66666776643 34455544 68899999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVE 165 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 165 (220)
+|+|++++.++..+..|+..+.... ....|+++++||+|+... ...++...... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888865542 356899999999998753 33444333322 235689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYSN 178 (220)
Q Consensus 166 ~l~~~l~~~~~~~ 178 (220)
++++++.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=3.7e-26 Score=167.72 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=124.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+.. +.+|.+. ....+.++ ...+.+||++|+..+...+..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 35899999999999999999999988754 4556543 33445555 3688999999999988888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 166 (220)
|+|++++.++..+..|+..+.... ....|+++++||+|+.... ...+..... ...++.++++||+++.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 999999999999988887765432 2568999999999987532 333322222 22356799999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
++++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999987753
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=1.4e-25 Score=166.85 Aligned_cols=160 Identities=23% Similarity=0.343 Sum_probs=123.5
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
+...+||+++|++|||||||++++.+..+. .+.+|.+.. ...+.+++ +.+.+||++|+..+...+..+++.++++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 455799999999999999999999988543 344555532 33455553 6889999999999888889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCH
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNV 164 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 164 (220)
++|+|++++.++..+..|+..+... .....|+++++||+|+.... ..++...... ..++.++++||+++.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999999998888776443 23568999999999987543 3333333221 22457899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYS 177 (220)
Q Consensus 165 ~~l~~~l~~~~~~ 177 (220)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 166 QDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876643
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=8.7e-26 Score=167.79 Aligned_cols=158 Identities=22% Similarity=0.363 Sum_probs=123.3
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVG 89 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 89 (220)
.....+||+++|++|||||||+++|.+..+ ..+.+|.+.. ...+.+++ +.+.+||++|+..+...+..+++.+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 344569999999999999999999999887 4444555533 34455554 788999999999988888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCC
Q 027703 90 ALVVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTN 163 (220)
Q Consensus 90 ~i~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 163 (220)
+++|+|+++..++..+..|+..+.... ....|+++++||+|+.. ....++...... ..++.++++||+++.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999998888876542 35689999999999865 334444444332 2345789999999999
Q ss_pred HHHHHHHHHHH
Q 027703 164 VEAAFEVVIRE 174 (220)
Q Consensus 164 v~~l~~~l~~~ 174 (220)
+++++++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.3e-25 Score=166.28 Aligned_cols=157 Identities=22% Similarity=0.366 Sum_probs=123.3
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+. .+.+|.+. ....+.+++ +.+.+||++|+..+...+..+++.+|++++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999988776 45556553 334455554 788999999999888888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 166 (220)
|+|++++.++..+..|+..+.... ....|+++++||+|+.. ....++...... ..++.++++||+++.|+++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 999999999999999988876542 24689999999999875 334455444432 2356899999999999999
Q ss_pred HHHHHHHHHH
Q 027703 167 AFEVVIREIY 176 (220)
Q Consensus 167 l~~~l~~~~~ 176 (220)
++++|.+.+.
T Consensus 168 l~~~l~~~~~ 177 (187)
T 1zj6_A 168 GLEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=1.6e-26 Score=172.34 Aligned_cols=162 Identities=21% Similarity=0.429 Sum_probs=117.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC--cCCCCCcccceeeeeEEEEEe---CCeEEEEEEEecCCcchhhhhhHHhhcCCc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN--EFDSNSKATIGVEFQTQVVDI---DGKEVKAQIWDTAGQERFRAVTSAYYRGAV 88 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 88 (220)
.+||+++|++|||||||++++.+. .+...+.+|.+.+.....+.+ ++..+.+.+||++|+..+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 455566677776655554433 235678999999999988888888889999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC---HHHHHHHHHHhCCe----EEEeccCC
Q 027703 89 GALVVYDITRR-SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS---TEEGKSLAEEEGLF----FMETSALD 160 (220)
Q Consensus 89 ~~i~v~d~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 160 (220)
++++|||.+++ .++..+..|+..+.... .+.|++++|||+|+...+... .+++..++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 47999999998876653 358999999999986533221 22344455455665 89999999
Q ss_pred CC-CHHHHHHHHHHHHH
Q 027703 161 ST-NVEAAFEVVIREIY 176 (220)
Q Consensus 161 ~~-~v~~l~~~l~~~~~ 176 (220)
+. ++.++++.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 161 ESDALAKLRKTIINESL 177 (184)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHh
Confidence 97 99999998887664
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=2.8e-26 Score=172.69 Aligned_cols=165 Identities=23% Similarity=0.245 Sum_probs=118.5
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEE--EeC-CeEEEEEEEecCCcchhhhhh--
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV--DID-GKEVKAQIWDTAGQERFRAVT-- 80 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i--~~~-~~~~~~~~~d~~g~~~~~~~~-- 80 (220)
.+...+...+||+++|++|||||||++++.+...+. ++.+.......+ .+. +..+.+.+||++|+..+....
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD 88 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh
Confidence 345566678999999999999999999988753332 333333332222 232 566789999999998876665
Q ss_pred -HHhhcCCcEEEEEEeCCCc--ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC-------CCCCCHHHHHHHHH---
Q 027703 81 -SAYYRGAVGALVVYDITRR--SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS-------IRDVSTEEGKSLAE--- 147 (220)
Q Consensus 81 -~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~-------~~~~~~~~~~~~~~--- 147 (220)
..+++.++++++|||+++. .++..+..|+..+... ....|+++++||+|+.. .+.+..+++..++.
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 7899999999999999997 5566666666665433 34689999999999753 23344455667777
Q ss_pred -HhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 148 -EEGLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 148 -~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
..++.|+++||++ .|++++|+.+.+.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6678999999999 99999999998753
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=2.7e-26 Score=172.34 Aligned_cols=158 Identities=19% Similarity=0.332 Sum_probs=118.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++.+..+.. +.+|.+. ....+...+ +.+.+||++|+..+...+..+++.+++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTE--EEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCce--eEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 346999999999999999999999887763 4455543 333444443 78899999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----HhCCeEEEeccCCCCCHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-----EEGLFFMETSALDSTNVE 165 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 165 (220)
+|+|++++.++..+..|+..+.... ....|+++++||+|+... ...++...... ..++.++++||+++.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988888765432 346899999999998653 23333222211 123568999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 166 AAFEVVIREIY 176 (220)
Q Consensus 166 ~l~~~l~~~~~ 176 (220)
+++++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=1.3e-24 Score=175.92 Aligned_cols=161 Identities=32% Similarity=0.559 Sum_probs=140.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++++|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 58999999999999999999999998888877775433 45667788889999999999999888888899999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEeccC
Q 027703 94 YDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI------------RDVSTEEGKSLAEEEGL-FFMETSAL 159 (220)
Q Consensus 94 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (220)
+|++++.++..+. .|+..+..... ..|+++++||+|+... +.+..+++..++...++ +++++||+
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 9999999999987 57777766544 6899999999998543 56788889999999887 89999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIREIY 176 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~ 176 (220)
++.|+++++++|.+.+.
T Consensus 313 ~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999988764
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=3.9e-25 Score=164.13 Aligned_cols=159 Identities=20% Similarity=0.335 Sum_probs=122.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|++|||||||++++.+..+ ..+.+|.+.. ...+.+++ ..+.+||++|+..+...+..++..+++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998877 4445555533 34455554 78899999999988888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVE 165 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 165 (220)
+|+|++++.++..+..|+..+.... ....|+++++||+|+... ...++....... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888875543 356899999999998653 344444443322 23478999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 166 AAFEVVIREIYS 177 (220)
Q Consensus 166 ~l~~~l~~~~~~ 177 (220)
+++++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.93 E-value=7.2e-25 Score=160.56 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=114.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh------hhhHHhhc--
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR------AVTSAYYR-- 85 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-- 85 (220)
.++|+++|++|||||||+++|.+..+.....++.+.+...+.+.+++ ..+.+|||+|+..+. .....++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999999877666556655565666666665 578899999987653 23344554
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.++++++++|.++. +....|+..+.. ...|+++++||+|+...+.+.. ++..++...+++++++||+++.|++
T Consensus 81 ~~~~~i~v~D~~~~---~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCH---HHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCch---hHhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 89999999999874 344456666544 2589999999999865444432 3567778888999999999999999
Q ss_pred HHHHHHHHHH
Q 027703 166 AAFEVVIREI 175 (220)
Q Consensus 166 ~l~~~l~~~~ 175 (220)
++|+++.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.2e-27 Score=181.13 Aligned_cols=163 Identities=31% Similarity=0.562 Sum_probs=134.4
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....+||+++|++|||||||++++.+..+...+.+|.+... ...+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 34579999999999999999999999988877777664333 34556677778889999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEe
Q 027703 91 LVVYDITRRSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR------------DVSTEEGKSLAEEEGL-FFMET 156 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (220)
++|+|++++.++..+. .|+..+..... ..|+++++||+|+...+ .+..+++..++...+. +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999987 67666655433 68999999999986543 4555667778888787 89999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 027703 157 SALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~ 175 (220)
||+++.|+++++++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999988654
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.93 E-value=9.2e-26 Score=168.65 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=123.7
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALV 92 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 92 (220)
..+||+++|++|||||||++++.+..+.. +.+|.+. ....+.+++ +.+.+||++|+..+...+..+++.+|++++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 46999999999999999999998887654 4455543 334454543 688999999999888888888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHH-----HHhCCeEEEeccCCCCCHHH
Q 027703 93 VYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-----EEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 93 v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 166 (220)
|+|++++.++..+..|+..+.... ....|+++++||+|+.... ..++..... ...+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence 999999999999988888765543 3568999999999986532 233322222 12345799999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
+++++.+.+.+
T Consensus 174 l~~~l~~~i~~ 184 (189)
T 2x77_A 174 GMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=7.4e-26 Score=177.26 Aligned_cols=169 Identities=27% Similarity=0.352 Sum_probs=121.2
Q ss_pred CCCCCceeeEEEEEECCC---------CCcHHHHHHHHhh---CcCCCCCcccc-eeeeeEEE--------------EEe
Q 027703 6 RGGGGEEYLFKIVLIGDS---------AVGKSNLLSRFAR---NEFDSNSKATI-GVEFQTQV--------------VDI 58 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~---------g~GKSTll~~l~~---~~~~~~~~~t~-~~~~~~~~--------------i~~ 58 (220)
+.+...+..+||+++|.+ |||||||++++.+ ..+...+.+|. +.+..... ..+
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 345556678999999999 9999999999999 56666666554 32222111 124
Q ss_pred CCeEEEEEEEe-----------------------cCCcchhhhhhHHhhc---------------------CCcEEEEEE
Q 027703 59 DGKEVKAQIWD-----------------------TAGQERFRAVTSAYYR---------------------GAVGALVVY 94 (220)
Q Consensus 59 ~~~~~~~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~ 94 (220)
++..+.+.+|| +.|+..+...+..+++ +++++++||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 56778899999 4444444444445555 699999999
Q ss_pred eCCCc--ccHHHHHHHHHHHHhh-CCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-hCCeEEEeccCCCCCHHHHHHH
Q 027703 95 DITRR--SSFDSVKRWLEELTTH-CDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-EGLFFMETSALDSTNVEAAFEV 170 (220)
Q Consensus 95 d~~~~--~~~~~~~~~~~~l~~~-~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~ 170 (220)
|++++ .+|+.+..|+..+... .....|+++++||+|+...+. .+++..++.. .++.++++||+++.|++++|++
T Consensus 171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 99998 8999999999887654 334689999999999865433 3567777766 4789999999999999999999
Q ss_pred HHHHHH
Q 027703 171 VIREIY 176 (220)
Q Consensus 171 l~~~~~ 176 (220)
|.+.+.
T Consensus 249 l~~~l~ 254 (255)
T 3c5h_A 249 LVQLID 254 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987653
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=7.6e-25 Score=166.82 Aligned_cols=159 Identities=14% Similarity=0.208 Sum_probs=113.2
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe-EEEEEEEecCCcchhhh-hhHHhhcCCc
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK-EVKAQIWDTAGQERFRA-VTSAYYRGAV 88 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~~~~~d~~g~~~~~~-~~~~~~~~~~ 88 (220)
+...+||+++|++|||||||++++.+..+...+.++. ... ..+.+++. .+.+.+||++|+..+.. .+..+++.++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSS--AIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEE--EEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eee--EEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3456899999999999999999999998887776443 222 23556543 57899999999998877 7788899999
Q ss_pred EEEEEEeCCCcc-cHHHHHHHHHH-HHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-----------------
Q 027703 89 GALVVYDITRRS-SFDSVKRWLEE-LTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE----------------- 147 (220)
Q Consensus 89 ~~i~v~d~~~~~-~~~~~~~~~~~-l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~----------------- 147 (220)
++++|+|+++.. ++.....++.. +.. ......|+++++||+|+...+. .++....+.
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHHHHHCC------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHHhccchhccccc
Confidence 999999998843 45555555444 332 1234689999999999875432 222111111
Q ss_pred --------------------Hh--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 027703 148 --------------------EE--GLFFMETSALDS------TNVEAAFEVVIRE 174 (220)
Q Consensus 148 --------------------~~--~~~~~~~Sa~~~------~~v~~l~~~l~~~ 174 (220)
.. .+.|+++||+++ .|++++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999865
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=1.2e-23 Score=162.02 Aligned_cols=168 Identities=20% Similarity=0.127 Sum_probs=116.8
Q ss_pred CCCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc------hh---hh
Q 027703 8 GGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE------RF---RA 78 (220)
Q Consensus 8 ~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~------~~---~~ 78 (220)
+..++..+||+++|++|||||||+++|.+..+.....+..+.......+...+ ..+.+||++|+. .. ..
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence 33345579999999999999999999999876533322222333333333343 678899999983 21 11
Q ss_pred hhHHhhcCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH---HHHHHHHHhC--C
Q 027703 79 VTSAYYRGAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE---EGKSLAEEEG--L 151 (220)
Q Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~---~~~~~~~~~~--~ 151 (220)
....++..++++++|+|+++..++.. ...|+..+... ....|+++++||+|+...+.+..+ ++..++...+ +
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI 179 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCE
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCc
Confidence 22345778899999999999877642 23455555443 236899999999999776666654 3555666655 7
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIYSN 178 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 178 (220)
.++++||+++.|++++|++|.+.+.+.
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999988653
No 105
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=6.6e-24 Score=158.22 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=121.9
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh------hhhHHhhc-
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR------AVTSAYYR- 85 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~- 85 (220)
..++|+++|++|||||||+++|.+..+.....++.+.....+.+.+++ ..+.+||++|+..+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999999876555556666666667777765 678899999987653 23445553
Q ss_pred -CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 86 -GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 86 -~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
.++++++++|.++ ++....|+..+.. ...|+++++||+|+...+.+. .++..++...+++++++|++++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5899999999864 5666667666654 357899999999986544443 3566778888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIYS 177 (220)
Q Consensus 165 ~~l~~~l~~~~~~ 177 (220)
+++++++.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 157 EELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=1.3e-23 Score=168.67 Aligned_cols=159 Identities=20% Similarity=0.275 Sum_probs=123.4
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-----hhhhHHhh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-----RAVTSAYY 84 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-----~~~~~~~~ 84 (220)
..+||+++|++|||||||++++.+...+. .+.+|.+ ...+.+.+++ .+.+.+||++|+..+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 46899999999999999999998874332 2334444 3444555544 578999999999877 66778888
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCC--CCC----CCHHHHHHHHHHhC---CeE
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDS--IRD----VSTEEGKSLAEEEG---LFF 153 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 153 (220)
+.++++++|+|+++..+++.+..|...+.... ....|+++++||+|+.. .+. ...+++..++...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877755443221 34689999999999875 333 44567888888876 799
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 027703 154 METSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 154 ~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
+++||++ .++.+.|..+.+.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 88888888877654
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.1e-23 Score=155.57 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=119.1
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGA 90 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 90 (220)
....++|+++|++|||||||++++.+..+...+.++.+.......+.+++. .+.+||++|+..+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 345689999999999999999999999888777766665555566667664 567899999988888888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC---------CeEEEeccCCC
Q 027703 91 LVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG---------LFFMETSALDS 161 (220)
Q Consensus 91 i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 161 (220)
++|+|+++....... +++..+ .....|+++++||+|+... ..++......... +.++++||+++
T Consensus 83 i~v~d~~~~~~~~~~-~~l~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV-EAINHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHHH-HHHHHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHHH-HHHHHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999999885443332 222222 2246899999999998653 2333333333222 47899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIYS 177 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~~ 177 (220)
.|+++++++|.+.+..
T Consensus 156 ~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhh
Confidence 9999999999988764
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=8.9e-25 Score=174.75 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=114.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCC---CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh---hhHHhhcCCcE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDS---NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA---VTSAYYRGAVG 89 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~---~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~ 89 (220)
||+++|++|||||||++++.+..++. ...+|++..... + +..+.+++|||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988765443 245676655543 2 2347899999999998863 45789999999
Q ss_pred EEEEEeCCCc--ccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEe
Q 027703 90 ALVVYDITRR--SSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI-------RDVSTEEGKSLAEE----EGLFFMET 156 (220)
Q Consensus 90 ~i~v~d~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 156 (220)
+++|||++++ ..+..+..|+..+... .++.|++++|||+|+... |.+..+++.+++.. .++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 2222233333434333 346899999999998753 33455556677764 57899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 027703 157 SALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
||++ .++.+.|..+.+.+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSST
T ss_pred ccCC-CcHHHHHHHHHHHHHh
Confidence 9998 6899999999877643
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.90 E-value=6.4e-24 Score=156.64 Aligned_cols=154 Identities=22% Similarity=0.212 Sum_probs=112.6
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------hhHHh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------VTSAY 83 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~~~~~ 83 (220)
..+||+++|++|||||||+++|.+..+.. ...++.+.+...+.+.+++. .+.+||++|+..... ....+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 35899999999999999999999986532 22334445555667777764 578999999854211 11245
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
++.++++++|+|.++..++.. ..|+..+........|+++++||+|+..... .++.....+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999888764 4677776665555689999999999853211 11122456889999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIY 176 (220)
Q Consensus 164 v~~l~~~l~~~~~ 176 (220)
+++++++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=5.7e-23 Score=175.17 Aligned_cols=166 Identities=19% Similarity=0.333 Sum_probs=125.1
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEE
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL 91 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 91 (220)
...+||+++|.+|||||||+++|.+..+.. +.+|.+.. ...+.+.+ +.+.+|||+|+..+...+..+++.+|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCcccee--EEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 346999999999999999999999998654 34555543 33444443 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHH
Q 027703 92 VVYDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVE 165 (220)
Q Consensus 92 ~v~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 165 (220)
+|||++++.+|..+..|+..+.... ....|+++++||+|+... ....+....... ..+.++++||+++.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999999988875533 256899999999998753 233333222211 23458999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 027703 166 AAFEVVIREIYSNISRKVL 184 (220)
Q Consensus 166 ~l~~~l~~~~~~~~~~~~~ 184 (220)
++|++|.+.+.+.......
T Consensus 473 ~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp HHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999888664444333
No 111
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=9.2e-23 Score=165.16 Aligned_cols=157 Identities=18% Similarity=0.333 Sum_probs=117.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.+||+|+|++|||||||+++|.+..+.... +|.+.. ...+... .+.+.+|||+|+..+...+..+++.++++++|
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999998865433 454433 3334443 47889999999999998999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH-----hCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE-----EGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 167 (220)
||+++..+|..+..|+..+.... ....|+++++||+|+.... ..++....... .+++++++||+++.|++++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 99999999999988887765433 3568999999999987533 33333222221 2346899999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|++|.+.+.+
T Consensus 318 ~~~l~~~l~~ 327 (329)
T 3o47_A 318 LDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=2.4e-23 Score=155.22 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=115.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC-----------cchhhhhhHHh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG-----------QERFRAVTSAY 83 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~ 83 (220)
+||+++|++|||||||++++.+..+...+.++.+..... +.+. .+.+||+|| +..+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999887777765543333 3332 577899999 45555566666
Q ss_pred hcC-CcEEEEEEeCCCcccHHHH-HHHHHH--------H-HhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCe
Q 027703 84 YRG-AVGALVVYDITRRSSFDSV-KRWLEE--------L-TTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLF 152 (220)
Q Consensus 84 ~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------l-~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (220)
++. ++++++++++.+..++..+ ..|... + ........|+++++||+|+...+ .+++..++...+.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 666 7766667777777777776 445431 1 22222468999999999987543 55677788877764
Q ss_pred -------EEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 153 -------FMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 153 -------~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
++++||+++.|+++++++|.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 7999999999999999999988865
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=6.9e-23 Score=153.55 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=105.4
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC----------cchhhhhh
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG----------QERFRAVT 80 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g----------~~~~~~~~ 80 (220)
+...++|+++|++|||||||+++|.+..+.....++.+..........++ .+.+||++| +..+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34579999999999999999999999876555554443333333333333 578999999 55555566
Q ss_pred HHhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH--HHHHH-HHHHhCCeEE
Q 027703 81 SAYYRGA---VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST--EEGKS-LAEEEGLFFM 154 (220)
Q Consensus 81 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~--~~~~~-~~~~~~~~~~ 154 (220)
..++..+ +++++|+|+++..++.... ++..+.. ...|+++++||+|+...+.+.. ++... +.....+.++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 6676666 9999999999888877642 2222222 3579999999999875443221 22222 2223467899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
++||+++.|+++++++|.+.+
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=1.4e-22 Score=147.01 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=104.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch-------hhhhhHHhhcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER-------FRAVTSAYYRG 86 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~ 86 (220)
+||+++|++|||||||++++.+..+.. ...++.+.+.....+..++. .+.+||++|... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999987542 22233344445556666664 678999999876 34455667899
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCHH
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNVE 165 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 165 (220)
++++++|+|.++..+... .++...... ...|+++++||+|+.... +++..+. ..++ .++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999988655433 222222221 357899999999986532 2333444 5566 79999999999999
Q ss_pred HHHHHHHHH
Q 027703 166 AAFEVVIRE 174 (220)
Q Consensus 166 ~l~~~l~~~ 174 (220)
++++++.+.
T Consensus 151 ~l~~~l~~~ 159 (161)
T 2dyk_A 151 ELLEAIWER 159 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=3.7e-22 Score=160.26 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=124.0
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccc-eeeeeEEEEEeCCeEEEEEEEecCCcchhh----------
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATI-GVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------- 77 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~-~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------- 77 (220)
.++.+.-.|+++|.+|||||||+|+|.+..+......+. +.....+..... ...++.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 456677899999999999999999999998765444332 233333334333 14688899999985433
Q ss_pred hhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEE
Q 027703 78 AVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFME 155 (220)
Q Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (220)
.....++..+|++++|+|+++..++.....|+..+.. ...|+++++||+|+...+....+....+....+ ..++.
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4556778899999999999999888887766666654 357999999999986334445555666666654 78999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 027703 156 TSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
+||+++.|++++++++.+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EeCCCCCCHHHHHHHHHHhCc
Confidence 999999999999999998774
No 116
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.89 E-value=4e-23 Score=163.09 Aligned_cols=184 Identities=17% Similarity=0.170 Sum_probs=137.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh------hhHHhh--c
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA------VTSAYY--R 85 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 85 (220)
.++|+++|++|||||||+++|++..+.....++.+.+...+.+.+.+. .+.+||+||+..+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999999876666677777777777777664 578999999876544 444555 6
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.+|++++|+|+++. .....++..+... ...|+++++||.|+...+..... ...+.+..+++++++|++++.|+.
T Consensus 81 ~~d~vi~v~D~~~~---~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCL---MRNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcc---hhhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 89999999998774 2333344444333 22899999999997543333322 567777889999999999999999
Q ss_pred HHHHHHHHHHHHH-hhhhhcCcchhhhccccceeeeeecCC
Q 027703 166 AAFEVVIREIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGA 205 (220)
Q Consensus 166 ~l~~~l~~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~ 205 (220)
++++++.+.+... .+..+..|....+...++++.-.-.+.
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 155 ELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELLRGT 195 (271)
T ss_dssp HHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 9999999988653 334566777777777777765544443
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=2.2e-22 Score=157.68 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=119.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh------hhHHhh-
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA------VTSAYY- 84 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~------~~~~~~- 84 (220)
...++|+++|.+|||||||+++|++..+.....++.+.....+.+...+ ..+.+||+||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999876655556666666666666554 6888999999876543 223444
Q ss_pred -cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 85 -RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 85 -~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
..+|++++|+|+++..+. ..|+..+.. ...|+++++||+|+...+.+.. ++..+....+++++++||+++.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999885443 234444433 2589999999999865444442 36678888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIY 176 (220)
Q Consensus 164 v~~l~~~l~~~~~ 176 (220)
+.++++++.+...
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=6.4e-23 Score=176.26 Aligned_cols=163 Identities=20% Similarity=0.270 Sum_probs=122.4
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEE------EEEe--CCeEEEEEEEecCCcchhhhhhHH
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQ------VVDI--DGKEVKAQIWDTAGQERFRAVTSA 82 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~------~i~~--~~~~~~~~~~d~~g~~~~~~~~~~ 82 (220)
+...+||+++|.+|||||||++++.+..+...+.+|.+...... .+.+ ++..+.+.+||++|+..+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 55679999999999999999999999998888888877655533 1222 234578999999999988888888
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST 162 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (220)
+++.++++++|+|+++. +....|+..+..... ..|+++++||+|+...+.+..+++..++...+.+++++||+++.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999998764 555677777776643 58999999999998778888888888888889999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|++++++.+.+.+.+
T Consensus 194 gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 194 GVESIAKSLKSAVLH 208 (535)
T ss_dssp -CTTHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988765
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.88 E-value=1.3e-22 Score=159.91 Aligned_cols=153 Identities=21% Similarity=0.192 Sum_probs=114.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh------hhhHHhhc--
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR------AVTSAYYR-- 85 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-- 85 (220)
.++|+++|++|||||||+++|++........++.+.+...+.+ .. ...+.+||+||+..+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5899999999999999999999986544444555554444444 33 4578899999987654 34455554
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVE 165 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (220)
.+|++++|+|+++..+ ...|...+.. ...|+++++||+|+...+.+. .++..+....+++++++||+++.|++
T Consensus 80 ~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 6999999999987543 3345444443 358999999999986544443 34567888889999999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 166 AAFEVVIREIY 176 (220)
Q Consensus 166 ~l~~~l~~~~~ 176 (220)
++++++.+.+.
T Consensus 153 el~~~i~~~~~ 163 (272)
T 3b1v_A 153 QVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=1.6e-21 Score=145.85 Aligned_cols=158 Identities=15% Similarity=0.215 Sum_probs=107.4
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCC----------cchhhhh
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG----------QERFRAV 79 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g----------~~~~~~~ 79 (220)
++...+||+++|++|||||||+++|.+..+.... ++.+..........+. .+.+||++| +..+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 3455689999999999999999999998744322 2222222222222222 467899999 4445555
Q ss_pred hHHhhcCC---cEEEEEEeCCCcccHHHH--HHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHH-hCC
Q 027703 80 TSAYYRGA---VGALVVYDITRRSSFDSV--KRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEE-EGL 151 (220)
Q Consensus 80 ~~~~~~~~---~~~i~v~d~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~-~~~ 151 (220)
+..+++.+ +++++|+|.++..+.... ..|+.. . ..|+++++||+|+..... ...+++..++.. ..+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 56666655 899999998876554433 233322 2 579999999999864322 223345555555 347
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+++++||+++.|+++++++|.+.+.+
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 89999999999999999999987643
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=2.4e-22 Score=157.24 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=116.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----------hhHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----------VTSAYY 84 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~ 84 (220)
.+|+++|.+|||||||+|+|++..+.....++.+.+...+.+.+.+. .+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998766666677777777788877774 778999999875543 344556
Q ss_pred --cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703 85 --RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST 162 (220)
Q Consensus 85 --~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (220)
..+|++++|+|+++..+...+..+ + .....|+++++||+|+...+.... +...+....+++++++||+++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l---~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---L---FELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---H---TTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---H---HHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 889999999999885444333222 2 223689999999999864333322 2345777789999999999999
Q ss_pred CHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIRE 174 (220)
Q Consensus 163 ~v~~l~~~l~~~ 174 (220)
|++++++++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4.2e-22 Score=151.97 Aligned_cols=144 Identities=18% Similarity=0.284 Sum_probs=103.7
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC---CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC-
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN---SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG- 86 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~- 86 (220)
....++|+++|++|||||||+++|.+..+... +.++.+. ......+.+||++|+..+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 44568999999999999999999999886542 2233221 1134577899999999888888888776
Q ss_pred ---CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----CCCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHHhCCe
Q 027703 87 ---AVGALVVYDIT-RRSSFDSVKRWLEELTTH----CDTAVGRMLVGNKCDLDSIRDVS------TEEGKSLAEEEGLF 152 (220)
Q Consensus 87 ---~~~~i~v~d~~-~~~~~~~~~~~~~~l~~~----~~~~~~~~~v~~k~Dl~~~~~~~------~~~~~~~~~~~~~~ 152 (220)
++++++|+|.+ +..++..+..|+..+... .....|+++++||+|+...+.+. .+++..+....+..
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888999988888776543 34578999999999997655433 34456666666778
Q ss_pred EEEeccCCCCC
Q 027703 153 FMETSALDSTN 163 (220)
Q Consensus 153 ~~~~Sa~~~~~ 163 (220)
++++|++++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 89999998775
No 123
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=4e-25 Score=174.21 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHH-HHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREI-YSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~-~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| ||++|+.+..++++.+.++. .++.+++++||+++++..+|||+++|++|+++.+|+++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33478999999999999 99999999999999999887 4589999999999999999999999999999999998875
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 232 ~ 232 (275)
T 3gfo_A 232 F 232 (275)
T ss_dssp T
T ss_pred h
Confidence 3
No 124
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.86 E-value=1.2e-23 Score=170.73 Aligned_cols=177 Identities=18% Similarity=0.153 Sum_probs=113.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecC----------C---cchhhhhhHHh
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTA----------G---QERFRAVTSAY 83 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~----------g---~~~~~~~~~~~ 83 (220)
++++||||||||||++.|.|... +..|.+.++|..+.-.-.+.+ + ..+......+.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~-----------p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni 101 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ-----------PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNI 101 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC-----------CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHH
T ss_pred EEEECCCCchHHHHHHHHhcCCC-----------CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHH
Confidence 79999999999999999999943 357788888765410000000 0 00001111111
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHh--hCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTT--HCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSAL 159 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~ 159 (220)
...... .........+.+.++++.+.. .....+.-++.|.|+ .+..|++++.+|++.++| +|++
T Consensus 102 ~~~l~~----~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q--------RValArAL~~~P~lLLLDEPts~L 169 (359)
T 3fvq_A 102 AYGLGN----GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ--------RAALARALAPDPELILLDEPFSAL 169 (359)
T ss_dssp HTTSTT----SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH--------HHHHHHHHTTCCSEEEEESTTTTS
T ss_pred HHHHHH----cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH--------HHHHHHHHHcCCCEEEEeCCcccC
Confidence 110000 000111122233334433321 112222222222222 334477999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 160 DSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
|.....++++.+.++..+ +.+++++|||++++..+|||+++|++|+++..|+++++.
T Consensus 170 D~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 170 DEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999988766 899999999999999999999999999999999988753
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=2.5e-20 Score=152.59 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=119.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhh---------hhhHH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---------AVTSA 82 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---------~~~~~ 82 (220)
...++++++|++|||||||+++|.+..+.....+..+.......+...+ ..+.+|||+|..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999999874333222223333334444443 578899999974321 11223
Q ss_pred hhcCCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCC
Q 027703 83 YYRGAVGALVVYDITRRS--SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALD 160 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (220)
+...++++++|+|+++.. ++.....|+..+..... ..|+++++||.|+.... ..+++..++...+++++.+||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE--NIKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH--HHHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH--HHHHHHHHHHhcCCCeEEEeCCC
Confidence 456789999999998876 77887788888766443 68999999999986533 23456667777888999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYSN 178 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~~ 178 (220)
+.|+++++++|.+.+...
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988653
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=1.1e-21 Score=155.11 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=115.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh----------hhHHh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA----------VTSAY 83 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~----------~~~~~ 83 (220)
.++|+++|.+|||||||+|+|++..+.....++.+.+...+.+...+. .+.+|||||...+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 489999999999999999999998766666667677777777776654 567899999865541 22233
Q ss_pred h--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCC
Q 027703 84 Y--RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDS 161 (220)
Q Consensus 84 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (220)
+ ..+|++++|+|+++..+...+ ...+... ..|+++++||+|+...+... .+...+....+++++.+||+++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 789999999999875444333 3333322 58999999999986433322 1245677778899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027703 162 TNVEAAFEVVIREIY 176 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~ 176 (220)
.|++++++++.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987654
No 127
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.85 E-value=1e-23 Score=171.21 Aligned_cols=77 Identities=13% Similarity=0.225 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| ||++|+.+..++++.|.++..+ +.+++++||+++.+..+|||+++|++|+++++|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 34488999999999999 9999999999999999988877 89999999999999999999999999999999998775
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=5.9e-21 Score=146.03 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=105.0
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcC--CCCCcccceeeeeEEEEEeC-CeEEEEEEEecCCcc----------hhh
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEF--DSNSKATIGVEFQTQVVDID-GKEVKAQIWDTAGQE----------RFR 77 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~--~~~~~~t~~~~~~~~~i~~~-~~~~~~~~~d~~g~~----------~~~ 77 (220)
+...++|+++|.+|||||||+++|.+..+ .....+..+..... .... .....+.+|||||.. .+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34568999999999999999999999863 22222222222222 2232 233578899999942 234
Q ss_pred hhhHHhhcC---CcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HHHHHHHHHH----
Q 027703 78 AVTSAYYRG---AVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TEEGKSLAEE---- 148 (220)
Q Consensus 78 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~~~~~~~~~---- 148 (220)
.....++.. ++++++|+|.++..+... ..++..+.. ...|+++++||+|+....... .++....+..
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 444455554 778999999987655333 233344433 357999999999986433211 1122223333
Q ss_pred ---hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 149 ---EGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 149 ---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
...+++.+||+++.|+.+++++|.+.+..
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 45689999999999999999999988754
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=5.8e-20 Score=146.86 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=108.1
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcch--------hhhhhHHh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQER--------FRAVTSAY 83 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~--------~~~~~~~~ 83 (220)
...+|+++|.+|||||||+|+|++..+..... +..+.....+.+... ..++.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 34679999999999999999999998764333 222222222333333 46889999999865 34455678
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH--hCCeEEEeccCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWL-EELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE--EGLFFMETSALD 160 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 160 (220)
++.+|++++|+|+++..+... .|+ ..+... ....|+++++||+|+...+. +....+.. ....++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence 899999999999988765543 444 334332 23589999999999864322 01222222 234789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIY 176 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~ 176 (220)
+.|++++++++.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999987653
No 130
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.84 E-value=2.3e-23 Score=170.16 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+..|++++.+|++.++| +|++|.....++++.|.++..+ +.+++++|||++++..+|||+++|++|+++..|+++++
T Consensus 142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 44488999999999999 9999999999999999998876 89999999999999999999999999999999998875
No 131
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.84 E-value=2.7e-23 Score=163.27 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=71.0
Q ss_pred HHHHHHHHH------HhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCC
Q 027703 139 TEEGKSLAE------EEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSK 209 (220)
Q Consensus 139 ~~~~~~~~~------~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~ 209 (220)
...|++++. +|++.++| ||++|+.+..++++.+.++..+ +.+++++|||++++..+|||+++|++|+++.+
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 334789999 99999999 9999999999999999988877 47999999999999999999999999999999
Q ss_pred CCCcccc
Q 027703 210 GSMMDFS 216 (220)
Q Consensus 210 g~~~~~~ 216 (220)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9988754
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=3.1e-20 Score=156.68 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=98.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh--------HHhh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT--------SAYY 84 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 84 (220)
.+||+++|++|||||||+|+|.+.... ....++.+.+.....+.+++ +.+.+|||+|+..+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 589999999999999999999998643 33334445555556666766 578899999986544332 3367
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCH
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNV 164 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (220)
..+|++++|+|.+++.++..+..+...+.... ..|+++|+||+|+...... +...+......+++.+||+++.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999999888764433333232222 5899999999998754432 222343333468999999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIY 176 (220)
Q Consensus 165 ~~l~~~l~~~~~ 176 (220)
++++++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999887
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=3.6e-20 Score=155.43 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=114.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCc----------chhhhhh
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQ----------ERFRAVT 80 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~----------~~~~~~~ 80 (220)
+..+||+++|.+|||||||+|+|++..+. ....++.+.+.....+..++. .+.+|||+|+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999998764 333344445555556666664 5789999997 3333333
Q ss_pred H-HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHH-H----hCCeEE
Q 027703 81 S-AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAE-E----EGLFFM 154 (220)
Q Consensus 81 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~-~----~~~~~~ 154 (220)
. .++..+|++++|+|+++..+++.. .|+..+.. ...|+++++||+|+...+....++....+. . ..++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467889999999999998888876 45555543 357899999999987655544444322222 2 357899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH
Q 027703 155 ETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 155 ~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
.+||+++.|+.++++.+.+...+
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.83 E-value=5.4e-21 Score=158.89 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=112.8
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-------hHH
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV-------TSA 82 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~-------~~~ 82 (220)
....++|+++|..|+|||||+++|++..+.. ...++.+.+.....+.+.+.. .+.+|||+|+..+... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 4456899999999999999999999987643 333444555556666666542 7889999998765432 355
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCC
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDST 162 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (220)
++..+|++++|+|+... .....|+..+... ..|+++++||+|+...+.. +.+..+....+++++.+||+++.
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence 78899999999998332 2334555555544 6899999999998765543 55666666678899999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|+++++++|.+.+.+
T Consensus 182 gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 182 GFDDIGKTISEILPG 196 (423)
T ss_dssp STTTHHHHHHHHSCC
T ss_pred CHHHHHHHHHHhhhh
Confidence 999999999988743
No 135
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.83 E-value=2.4e-22 Score=164.25 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=114.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEE----------EEEEEecCCcchhhhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEV----------KAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~----------~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
-++++||||||||||++.|.|... +..|.+.+++..+ .+.+-+.. .........+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~-----------p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~-l~~~ltv~eni~~ 106 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE-----------PTEGRIYFGDRDVTYLPPKDRNISMVFQSYA-VWPHMTVYENIAF 106 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC-----------CSEEEEEETTEECTTSCGGGGTEEEEEC-------CCCHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-----------CCceEEEECCEECCCCChhhCcEEEEecCcc-cCCCCCHHHHHHH
Confidence 379999999999999999999943 3567777776442 11111110 0000111111111
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHH--hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCC
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELT--THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDS 161 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~ 161 (220)
... ..........+.+.+++..+. ......+ ..|+....+....|++++.+|++.++| +|++|.
T Consensus 107 ~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~--------~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 174 (372)
T 1v43_A 107 PLK----IKKFPKDEIDKRVRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174 (372)
T ss_dssp TCC------CCCHHHHHHHHHHHHHHTTCGGGTTSCT--------TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred HHH----hcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 000 000111111222333333322 1112222 234444445566688999999999999 999999
Q ss_pred CCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 162 TNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 162 ~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 175 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 175 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999998766 89999999999999999999999999999999998776
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=1.9e-19 Score=147.34 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=107.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhHHhhc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTSAYYR 85 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~ 85 (220)
..|+++|++|||||||+|+|.+..+.....+..+.++..+.+.+++ ..+.+|||+|... +... ...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~ 256 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK 256 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence 3499999999999999999999887554444555566677888887 4568899999622 2222 23467
Q ss_pred CCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC-CCHHHHHHHHHHh---CCeEEEeccC
Q 027703 86 GAVGALVVYDITRRS--SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD-VSTEEGKSLAEEE---GLFFMETSAL 159 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~ 159 (220)
.+|.+++|+|.+++. ....+..+...+........|+++|+||.|+..... ...+.+..+.... +..++.+|++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~ 336 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISAL 336 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTT
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 899999999998876 455555555555544445689999999999864220 0011232333443 3467889999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~~ 177 (220)
++.|+++++++|.+.+..
T Consensus 337 ~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 337 KRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhcc
Confidence 999999999999987765
No 137
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.83 E-value=1.4e-22 Score=164.89 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 34478999999999999 9999999999999999998765 89999999999999999999999999999999998775
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.2e-19 Score=152.98 Aligned_cols=161 Identities=19% Similarity=0.151 Sum_probs=117.7
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcC-CCCCcccceeeeeEEEEEeCCeEEEEEEEecCC----------cchhhhh
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAG----------QERFRAV 79 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g----------~~~~~~~ 79 (220)
.+..+||+++|.+|+|||||+++|.+... .....++.+.+.....+..++. .+.+|||+| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 34568999999999999999999997752 2233344444444556666664 678999999 4555544
Q ss_pred hH-HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh-----CCeE
Q 027703 80 TS-AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE-----GLFF 153 (220)
Q Consensus 80 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~-----~~~~ 153 (220)
.. .+++.++++++|+|+++....... .|+..+.. ...|+++++||+|+...+....+++...+.+. .+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~-~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 43 467889999999999886554432 34444433 35799999999999876776677766666654 5789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHH
Q 027703 154 METSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 154 ~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+++||+++.|++++++++.+.+.+
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999988765
No 139
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=1.8e-22 Score=159.54 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhh--hhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISR--KVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~--~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
...|++++.++++.++| +|++|+.+...+++.|.++..++.++ +++||+++++..+||++++|++|+++..|++++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 249 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 34488999999999999 99999999999999998887668899 999999999999999999999999999988766
Q ss_pred c
Q 027703 215 F 215 (220)
Q Consensus 215 ~ 215 (220)
+
T Consensus 250 ~ 250 (279)
T 2ihy_A 250 I 250 (279)
T ss_dssp H
T ss_pred H
Confidence 5
No 140
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.82 E-value=4.2e-20 Score=149.84 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=116.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----hhhhhHHhh---cCC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----FRAVTSAYY---RGA 87 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----~~~~~~~~~---~~~ 87 (220)
.+|+++|.+|||||||+++|++..+.....+..+..+..+.+.+++. ..+.+||+||+.. ...+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987643322232334444555666542 4788999999643 222333444 459
Q ss_pred cEEEEEEeCCC---cccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCC
Q 027703 88 VGALVVYDITR---RSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSALD 160 (220)
Q Consensus 88 ~~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (220)
+++++|+|+++ +.+++.+..|+.++..+.. ...|+++++||+|+...+ +....+..... ..++.+||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889999889888877642 468999999999986422 34455656555 6889999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~ 177 (220)
+.|+++++++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=3.6e-19 Score=137.84 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=105.0
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcc--cceeeeeEEEEEeCCeEEEEEEEecCCcch-----------h
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKA--TIGVEFQTQVVDIDGKEVKAQIWDTAGQER-----------F 76 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~--t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~-----------~ 76 (220)
.....+||+++|++|||||||+++|++..+.....+ +.+.......+.+++ ..+.+|||||... +
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345579999999999999999999999988766655 444545555566666 4678999999542 2
Q ss_pred hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCCCCCCC------HHHHHHHHHH
Q 027703 77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDSIRDVS------TEEGKSLAEE 148 (220)
Q Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~~~~~~------~~~~~~~~~~ 148 (220)
.......++.++++++|+|++...... ..++..+.... ....|+++++||.|+...+.+. .+....++..
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 223334556789999999987644421 12333322111 1135899999999986544333 2356777788
Q ss_pred hCCeEEEeccCC-----CCCHHHHHHHHHHHHHHH
Q 027703 149 EGLFFMETSALD-----STNVEAAFEVVIREIYSN 178 (220)
Q Consensus 149 ~~~~~~~~Sa~~-----~~~v~~l~~~l~~~~~~~ 178 (220)
.+..++.++... ..++.++++.+.+.+.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 887777765543 368888888888877664
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.82 E-value=1.7e-19 Score=152.30 Aligned_cols=153 Identities=25% Similarity=0.256 Sum_probs=114.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc-hhh--------hhhHHh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-RFR--------AVTSAY 83 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~ 83 (220)
.++|+++|++|||||||+|+|.+..+. ....++.+.+.....+.+++ ..+.+|||+|.. .+. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999998654 33334445556667777776 467899999986 432 123467
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
+..+|++++|+|++++.+++... ++..+ ...|+++++||+|+... ...++...+. ..+.+++.+||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 78999999999999988876642 33322 25789999999998642 3445544443 2346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 143
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=3.5e-22 Score=154.81 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.+|++.++| +|++|+.+...+++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 34477999999999999 999999999999999988866689999999999999999999999999999998887665
No 144
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.82 E-value=1.3e-22 Score=164.70 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 33488999999999999 9999999999999999998766 89999999999999999999999999999999998775
No 145
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.82 E-value=1.1e-22 Score=159.28 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..|++++.+|++.++| +|++|+.+..++++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 3378999999999999 999999999999999988876689999999999999999999999999999999988765
No 146
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.82 E-value=2e-22 Score=164.87 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 34488999999999999 9999999999999999998766 89999999999999999999999999999999998775
No 147
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=1.9e-22 Score=164.11 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 34488999999999999 9999999999999999998766 89999999999999999999999999999999998775
No 148
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.82 E-value=3.8e-22 Score=156.17 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~ 214 (220)
...|++++.+|++.++| +|++|+.+..++++.+.++..++.+++++||+++++..+||++++|++|+++..|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 34478999999999999 99999999999999998887668999999999999999999999999999999998876
No 149
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.81 E-value=2.3e-22 Score=157.68 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=70.1
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..|++++.+|++.++| +|++|+.+...+++.+.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 3488999999999999 999999999999999988866689999999999999999999999999999999988765
No 150
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.81 E-value=6.7e-22 Score=152.74 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..|++++.+|++.++| +|++|+.+..++++.+.++..+ +.+++++||+++.+ .+||++++|++|+++..++++++.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 3488999999999999 9999999999999999988766 89999999999965 789999999999999999887754
No 151
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.81 E-value=1.7e-22 Score=156.33 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..|++++.+|++.++| +|++|+.+...+++.+.++..+ +.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 3488999999999999 9999999999999999988765 89999999999999999999999999999999988765
No 152
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.81 E-value=3.4e-22 Score=157.12 Aligned_cols=176 Identities=19% Similarity=0.172 Sum_probs=112.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE-----EEEecCCcc----hhhhhhHHhhcC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA-----QIWDTAGQE----RFRAVTSAYYRG 86 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~-----~~~d~~g~~----~~~~~~~~~~~~ 86 (220)
.++++|+||||||||++.|.|.. ++..|.+.+++..+.- .+--.++.. ..........-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~-----------~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 103 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI-----------EPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA 103 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS-----------CCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHH
Confidence 47999999999999999999984 3356777777754210 000111110 001111111110
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHH----hhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCC
Q 027703 87 AVGALVVYDITRRSSFDSVKRWLEELT----THCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALD 160 (220)
Q Consensus 87 ~~~~i~v~d~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~ 160 (220)
... . .......+.+.+++..+. ......+.-++.|.| +....+++++.++++.++| +|++|
T Consensus 104 ~~~----~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~--------qRv~lAraL~~~p~lllLDEPts~LD 170 (266)
T 2yz2_A 104 VKN----F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK--------RRVAIASVIVHEPDILILDEPLVGLD 170 (266)
T ss_dssp TTT----T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHH--------HHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred HHh----c-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHH--------HHHHHHHHHHcCCCEEEEcCccccCC
Confidence 000 0 111222334444444321 111121211222222 2234477999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 161 STNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+.+...+++.+.++..++.+++++||+++.+..+||++++|++|+++..|+++++
T Consensus 171 ~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999988876689999999999999999999999999999988887664
No 153
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.81 E-value=1.7e-22 Score=164.60 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 33488999999999999 9999999999999999998765 89999999999999999999999999999999998775
No 154
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=1.5e-22 Score=158.10 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
..|++++.+|++.++| +|++|+.+...+++.|.++..++.+++++||+++++..+||++++|++|+++..|+++++
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 3477999999999999 999999999999999988866689999999999999999999999999999998887765
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=8.9e-19 Score=147.05 Aligned_cols=173 Identities=24% Similarity=0.182 Sum_probs=114.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhh-----------
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAV----------- 79 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~----------- 79 (220)
+..+|++++|++|||||||+|+|.+..+. ....++.+.+...+.+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34699999999999999999999998653 222334445555677878875 5678999997432211
Q ss_pred -hHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHH-H----HhCCeE
Q 027703 80 -TSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLA-E----EEGLFF 153 (220)
Q Consensus 80 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~-~----~~~~~~ 153 (220)
...++..++++++++|+++..+++.. .+...+.. ...|+++++||.|+...+....++....+ . ....++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 13456779999999999887776653 22222222 35789999999998754443344332222 2 235689
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhh
Q 027703 154 METSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA 191 (220)
Q Consensus 154 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~ 191 (220)
+.+||+++.|++++++.+.+...+ ....+.|+.++..
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~-~~~~i~t~~ln~~ 368 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYAS-YTTKVPSSAINSA 368 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH-HTCCCCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 999999999999999999987755 3334455555543
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=1e-18 Score=146.65 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=103.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch---------hhhhhHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER---------FRAVTSAYY 84 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~ 84 (220)
.+|+++|.+|||||||+|+|.+.... ....++.+.+...+.+.+++. .+.+|||+|+.. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999988754 233455556666777777775 568899999753 233456688
Q ss_pred cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHH-HHHHHHhCC-eEEEeccCCCC
Q 027703 85 RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEG-KSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 85 ~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
+.+|++++|+|.++..+... .++..+... ...|+++++||+|+... . ..++ ..+. ..++ .++.+||+++.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 99999999999988666543 222222211 25789999999997531 0 1222 3333 4555 68899999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREIYS 177 (220)
Q Consensus 163 ~v~~l~~~l~~~~~~ 177 (220)
|+.++++++.+.+.+
T Consensus 152 gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 152 NLDTMLETIIKKLEE 166 (439)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccc
Confidence 999999999988764
No 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=3e-19 Score=139.91 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=107.0
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCc-CCCCCccc-ceeeeeEEEEEeCCeEEEEEEEecCCcchhhh---------
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNE-FDSNSKAT-IGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------- 78 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~-~~~~~~~t-~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------- 78 (220)
+....++|+|+|++|||||||+++|++.. +.....++ .+.....+.+...+ ..+.+|||||...+..
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 34456999999999999999999999887 44444443 44444445555555 4678999999765422
Q ss_pred --hhHHhhcCCcEEEEEEeCCCcccH-HHHHHHHHHHHhhCCCCCcEEEEEe-cCCCCCCCCCCH-------HHHHHHHH
Q 027703 79 --VTSAYYRGAVGALVVYDITRRSSF-DSVKRWLEELTTHCDTAVGRMLVGN-KCDLDSIRDVST-------EEGKSLAE 147 (220)
Q Consensus 79 --~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~-k~Dl~~~~~~~~-------~~~~~~~~ 147 (220)
....+++.+|++++|+|++..... ..+..++..+.... ...|.+++.| |.|+... .... .++..++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 122366889999999999862221 11222332221111 1235555555 9998742 1111 22444566
Q ss_pred HhCCeE-----EEeccCCCCCHHHHHHHHHHHHHHHhhhhh
Q 027703 148 EEGLFF-----METSALDSTNVEAAFEVVIREIYSNISRKV 183 (220)
Q Consensus 148 ~~~~~~-----~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~ 183 (220)
..+..+ +.+||+++.|+.++|+++.+.+..+....+
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~ 214 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY 214 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence 555432 569999999999999999998876543344
No 158
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.79 E-value=4.4e-22 Score=161.39 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..|++++.+|++.++| +|++|.....++.+.|.++..+ +.+++++|||++++..+||++++|++|+++..|+++++.
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 3478999999999999 9999999999999999988776 899999999999999999999999999999999987753
No 159
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.79 E-value=5.9e-22 Score=152.04 Aligned_cols=71 Identities=23% Similarity=0.263 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS 211 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~ 211 (220)
..|++++.+|++.++| +|++|+.+...+++.+.++..++.+++++||+++.+ .+||++++|++|+++.+|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 3378999999999999 999999999999999988876689999999999998 7999999999999988775
No 160
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.79 E-value=1.1e-18 Score=142.10 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=97.2
Q ss_pred EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhC-CCCCcEEEEEecCC
Q 027703 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR----------RSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCD 130 (220)
Q Consensus 62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~D 130 (220)
.+.+.+||++|+..++..|..++++++++++|+|+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4789999999999999999999999999999999998 467888888888876532 25689999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 131 LDSIR---------------DVSTEEGKSLAE-----------EEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 131 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+...+ ....+++..++. ..++.+++|||+++.|+.++|+++.+.+.+
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 85322 356788888887 346778899999999999999999988764
No 161
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.79 E-value=3.2e-21 Score=149.93 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred HHHHHHHHHhC-------CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 140 EEGKSLAEEEG-------LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 140 ~~~~~~~~~~~-------~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..+++++.+++ +.++| +|++|+.+...+++.+.++..++.+++++||+++.+..+||++++|++|+++..|
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 34789999999 99999 9999999999999999888666889999999999999999999999999999988
Q ss_pred CCcccc
Q 027703 211 SMMDFS 216 (220)
Q Consensus 211 ~~~~~~ 216 (220)
+++++.
T Consensus 216 ~~~~~~ 221 (249)
T 2qi9_C 216 RREEVL 221 (249)
T ss_dssp EHHHHS
T ss_pred CHHHHh
Confidence 877653
No 162
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=7.9e-19 Score=132.96 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=98.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch----------hhhhhH
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER----------FRAVTS 81 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~----------~~~~~~ 81 (220)
....+++++|++|||||||+++|.+..+.....++.+.....+.+.+.+ .+.+||++|... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4458999999999999999999999874433333433333333333333 467899999742 122222
Q ss_pred Hhh---cCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCC--CCCHHHHHHHHHHhCC--e
Q 027703 82 AYY---RGAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIR--DVSTEEGKSLAEEEGL--F 152 (220)
Q Consensus 82 ~~~---~~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~--~~~~~~~~~~~~~~~~--~ 152 (220)
.++ ..++++++++|.++..++.. +..|+ .. ...|.++++||.|+.... ......+++++.+++. .
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 333 46788999999988766543 22222 11 357888899999975321 1124566677777764 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 027703 153 FMETSALDSTNVEAAFEVVIREIYSNIS 180 (220)
Q Consensus 153 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 180 (220)
++++|++++.++++++++|.+...++.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 5569999999999999999988765433
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.78 E-value=3.7e-19 Score=149.61 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=103.0
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhh--------HHh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVT--------SAY 83 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~--------~~~ 83 (220)
..+||+++|++|||||||+|+|.+..+.. ...++.+.+.....+.+++ ..+.+|||+|...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 35899999999999999999999876542 3334444444445666666 467899999975443222 235
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTN 163 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (220)
+..+|++++|+|.+++.+... ..++..+. ..|+++++||+|+....... ....+. ...+++.+|++++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 688999999999998777655 34444432 26899999999987544322 100111 356789999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
+++++++|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 164
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.78 E-value=6.6e-19 Score=139.13 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=90.1
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CC-------cccceeeeeEEEEEeCCeEEEEEEEecCCcch------
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NS-------KATIGVEFQTQVVDIDGKEVKAQIWDTAGQER------ 75 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~-------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~------ 75 (220)
++...++|+++|.+|+|||||+|+|++..... .+ .+|.+.......+..++..+.+.+|||||...
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~ 83 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 83 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence 34567999999999999999999987765433 33 45555555555555566667999999999732
Q ss_pred -hhhhh-------HHhhc-------------CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 76 -FRAVT-------SAYYR-------------GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 76 -~~~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
+.... ..++. .+|+++++++.+.......-..++..+.. ..|+++|+||.|+...
T Consensus 84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 12111 22222 26788888876553322222233444432 6899999999997532
Q ss_pred CCCC--HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 135 RDVS--TEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
.... .......+...++.++.+|+.++.++.+++++|.+.
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2111 122444555678899999999999999999887754
No 165
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.6e-19 Score=130.97 Aligned_cols=116 Identities=19% Similarity=0.348 Sum_probs=85.8
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCC---CcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcC-
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSN---SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRG- 86 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~---~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~- 86 (220)
....++|+++|++|||||||+++|.+..+... ..++.+ .+...+.+.+||++|+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 34568999999999999999999999876542 111111 11133567899999998877766666655
Q ss_pred ---CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----CCCCCcEEEEEecCCCCCCC
Q 027703 87 ---AVGALVVYDIT-RRSSFDSVKRWLEELTTH----CDTAVGRMLVGNKCDLDSIR 135 (220)
Q Consensus 87 ---~~~~i~v~d~~-~~~~~~~~~~~~~~l~~~----~~~~~~~~~v~~k~Dl~~~~ 135 (220)
++++++|+|++ +..++..+..|+..+... .....|+++++||+|+...+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 888999888888775433 33568999999999987544
No 166
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.78 E-value=1.5e-17 Score=138.18 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=113.2
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEE-------------------Ee---CCeEEEEEE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVV-------------------DI---DGKEVKAQI 67 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i-------------------~~---~~~~~~~~~ 67 (220)
++.+.++|+++|.+|+|||||+++|++........ ........ .. ......+.+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----ccccceeeccccccccceecccccccccccccccccceEEE
Confidence 44567999999999999999999999864433211 00000000 00 112368899
Q ss_pred EecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHH
Q 027703 68 WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSL 145 (220)
Q Consensus 68 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~ 145 (220)
|||||+..+.......+..+|++++|+|+++..++....+++..+.... ..|+++++||+|+...... ..++...+
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 9999999998888889999999999999998876777777766655442 2478999999998643211 11122222
Q ss_pred HHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 146 AEE---EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 146 ~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
+.. .+++++.+||+++.|+.+++++|.+.+.
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 222 1568999999999999999999987653
No 167
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=3.7e-18 Score=136.49 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=103.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcc-h--------hhhhhHHh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQE-R--------FRAVTSAY 83 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~-~--------~~~~~~~~ 83 (220)
..+|+++|++|||||||+|+|.+..+..... +..+.....+.+..++ ..+.+|||||.. . +.......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3579999999999999999999987643222 2222222233333333 578899999986 2 22233456
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
+..+|++++|+|.++ -+ ....++..... ....|+++++||.|+...+....+....+....+. .++.+||+++.
T Consensus 86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 788999999999876 33 22233333222 23579999999999764221122233444444455 68899999999
Q ss_pred CHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREI 175 (220)
Q Consensus 163 ~v~~l~~~l~~~~ 175 (220)
++.++++.+.+.+
T Consensus 161 ~v~~l~~~i~~~l 173 (301)
T 1ega_A 161 NVDTIAAIVRKHL 173 (301)
T ss_dssp THHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998654
No 168
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.1e-17 Score=139.15 Aligned_cols=164 Identities=17% Similarity=0.142 Sum_probs=102.3
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCc---CCCCCcc--cceeeeeEEEEEe-------------C--C----eEEEEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNE---FDSNSKA--TIGVEFQTQVVDI-------------D--G----KEVKAQ 66 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~---~~~~~~~--t~~~~~~~~~i~~-------------~--~----~~~~~~ 66 (220)
+.+.++|+++|..++|||||+++|.+.. +..+..+ |+........+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4467999999999999999999998653 3333333 3332222222211 1 1 136889
Q ss_pred EEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHH
Q 027703 67 IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKS 144 (220)
Q Consensus 67 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~ 144 (220)
+||+||+..+..........+|++++|+|+++........+.+..+... ...|+++++||+|+..... ...++...
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999999888776666677889999999998643111112222222222 2247899999999875443 23455666
Q ss_pred HHHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 145 LAEE---EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 145 ~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
++.. .+++++.+||+++.|+.+++++|.+.+.
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6654 3678999999999999999999887543
No 169
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.77 E-value=4e-18 Score=144.38 Aligned_cols=158 Identities=14% Similarity=0.131 Sum_probs=108.0
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc-------CCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE-------FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYR 85 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~-------~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 85 (220)
..++|+++|..++|||||+++|.+.. +..+..+.++.+.....+.+++ ..+.+||+||+..+.......+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 57999999999999999999999876 2333333334433334454554 57889999999988888888889
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHHHHHHHHh----CCeEEEeccC
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEGKSLAEEE----GLFFMETSAL 159 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~Sa~ 159 (220)
.+|++++|+|+++...-+.. +++..+.. ...|.++++||+|+..... ...++...++... +++++.+||+
T Consensus 96 ~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~ 171 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 171 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred hCCEEEEEEecCCCccHHHH-HHHHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence 99999999999874332222 22222222 2467799999999864211 1123344555544 5789999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027703 160 DSTNVEAAFEVVIREIY 176 (220)
Q Consensus 160 ~~~~v~~l~~~l~~~~~ 176 (220)
++.|+.+++++|.+.+.
T Consensus 172 ~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLN 188 (482)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhc
Confidence 99999999999988775
No 170
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.77 E-value=2.3e-18 Score=140.06 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=92.2
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhC-CCCCcEEEEEecC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT----------RRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKC 129 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~ 129 (220)
..+.+++||++|+..++..|..++++++++++|+|++ +..++.....|+..+.... ..+.|++++|||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7788999989988876542 3568999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------hCCeEEEeccCCCCCHHHHHHHHH
Q 027703 130 DLDSIRD--V-------------------STEEGKSLAEE----------------EGLFFMETSALDSTNVEAAFEVVI 172 (220)
Q Consensus 130 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~l~ 172 (220)
|+...+. . ..+++..++.. ..+.+++|||+++.|+.++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853221 1 14566666443 123468899999999999999999
Q ss_pred HHHHH
Q 027703 173 REIYS 177 (220)
Q Consensus 173 ~~~~~ 177 (220)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.77 E-value=8.1e-18 Score=145.23 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=110.1
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc--CCC---------CC----cccceeeeeEEEEEe---CCeEEEEEEEecCCcc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE--FDS---------NS----KATIGVEFQTQVVDI---DGKEVKAQIWDTAGQE 74 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~--~~~---------~~----~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~~ 74 (220)
...+|+|+|..++|||||+++|+... +.. .. ...+++......+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46789999999999999999998632 110 00 111122222223333 4556889999999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC---
Q 027703 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL--- 151 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~--- 151 (220)
++.......+..+|++++|+|+++..+.+....|..... ...|+++++||.|+...+ ..+....+....++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999888899999999999999999888888776655442 257899999999987643 22334445555555
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 152 FFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 152 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
.++.+||+++.|++++++++.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999988764
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=147.11 Aligned_cols=161 Identities=18% Similarity=0.323 Sum_probs=86.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCC-CCc--------ccceeeeeEEEEEeCCeEEEEEEEecCCc-------ch
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDS-NSK--------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQ-------ER 75 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~-~~~--------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~-------~~ 75 (220)
...++|+|+|++|+|||||+++|++..... .+. +|.+.......+...+..+.+.+|||+|+ ..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987764332 221 34444333333444556678999999998 44
Q ss_pred hhhhhH-------HhhcCCcEE-----------EEEEeCCC-cccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703 76 FRAVTS-------AYYRGAVGA-----------LVVYDITR-RSSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSIR 135 (220)
Q Consensus 76 ~~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~ 135 (220)
+..... .+++.++++ +++|++++ ..++..+. .++..+ ....|+++|+||+|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 444443 444433221 24444443 34455544 233332 3568999999999987544
Q ss_pred CCCH--HHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 136 DVST--EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 136 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
.+.. +++.+++...+++++++|++++.+ .+.|.++.+.+.+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 3333 355566666788999999999999 8888888877765
No 173
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=2.9e-18 Score=137.73 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=95.1
Q ss_pred EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhC-CCCCcEEEEEecCC
Q 027703 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT----------RRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCD 130 (220)
Q Consensus 62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~D 130 (220)
.+.+++||++|+..++..|..++++++++++|+|.+ +..++.....|+..+.... ..+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 478999999999999999999999999999999554 6677888778887765432 25689999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 131 LDSIR----------------DVSTEEGKSLAE----------EEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 131 l~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+...+ ....+++..++. ..++.+++|||+|+.|++.+|+.+.+.+.+
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 86433 467788888854 345667789999999999999999988765
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=1.8e-17 Score=142.86 Aligned_cols=159 Identities=23% Similarity=0.275 Sum_probs=112.5
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCc--CCCC-------------CcccceeeeeEEEEEe---CCeEEEEEEEecCCc
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FDSN-------------SKATIGVEFQTQVVDI---DGKEVKAQIWDTAGQ 73 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~-------------~~~t~~~~~~~~~i~~---~~~~~~~~~~d~~g~ 73 (220)
+...+|+|+|..++|||||+++|+... +... ....+++......+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999997631 1110 0011111111222222 455688999999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC--
Q 027703 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-- 151 (220)
Q Consensus 74 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-- 151 (220)
.++.......+..+|++++|+|+++..+.+....|..... ...|+++++||+|+...+ ..+....+....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888888999999999999999988888776655442 357899999999987543 22223444444455
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 152 -FFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 152 -~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
.++.+||+++.|+.++++++.+.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999988764
No 175
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.77 E-value=6.9e-18 Score=140.50 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=109.1
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCc---CCCCCcc--cceeeeeEEEEEe-------------C--C----eEEE
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNE---FDSNSKA--TIGVEFQTQVVDI-------------D--G----KEVK 64 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~---~~~~~~~--t~~~~~~~~~i~~-------------~--~----~~~~ 64 (220)
..+.+.++|+++|..++|||||+++|++.. +..+..+ |+........+.. + + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 455778999999999999999999999653 3333333 3332222222211 0 1 1367
Q ss_pred EEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC--CCHHHH
Q 027703 65 AQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD--VSTEEG 142 (220)
Q Consensus 65 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~--~~~~~~ 142 (220)
+.+||+||+..+..........+|++++|+|+++........+.+..+... ...|+++++||+|+..... ...++.
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 899999999888776666677889999999998643111112222222222 1257889999999865321 122334
Q ss_pred HHHHHH---hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 143 KSLAEE---EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 143 ~~~~~~---~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
..++.. .+++++.+||+++.|+.+++++|.+.+.
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 455443 3678999999999999999999887553
No 176
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=5.5e-18 Score=131.86 Aligned_cols=165 Identities=14% Similarity=0.047 Sum_probs=102.5
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCccc--ceeeeeEEEEEeCCeEEEEEEEecCCcc--------hhhhh
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKAT--IGVEFQTQVVDIDGKEVKAQIWDTAGQE--------RFRAV 79 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t--~~~~~~~~~i~~~~~~~~~~~~d~~g~~--------~~~~~ 79 (220)
.....+||+++|.+|||||||+|+|++..+......+ .+.......+..++ ..+.+|||||.. .+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3345799999999999999999999998876544433 23333444555555 567899999963 22222
Q ss_pred hHHh----hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC---CCCCcEEEEEecCCCCCCCCC------CHHHHHHHH
Q 027703 80 TSAY----YRGAVGALVVYDITRRSSFDSVKRWLEELTTHC---DTAVGRMLVGNKCDLDSIRDV------STEEGKSLA 146 (220)
Q Consensus 80 ~~~~----~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~v~~k~Dl~~~~~~------~~~~~~~~~ 146 (220)
.... .+.+|++++|+|++.. .... ..++..+.... ....|+++++||.|+...... ..++...++
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~-~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRF-TAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBC-CHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCC-CHHH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 2223 3899999999999752 2221 12223332221 125789999999998642210 012356666
Q ss_pred HHhCCeEEEeccCC-----CCCHHHHHHHHHHHHHHH
Q 027703 147 EEEGLFFMETSALD-----STNVEAAFEVVIREIYSN 178 (220)
Q Consensus 147 ~~~~~~~~~~Sa~~-----~~~v~~l~~~l~~~~~~~ 178 (220)
...+..+...++.. +.++.++++.+.+.+.++
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66676666544333 589999999999888764
No 177
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=7.7e-19 Score=147.33 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=98.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCC-cccceeeeeEEEEEeCCeEEEEEEEecCCcc--------hhhhhhHHhhc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNS-KATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--------RFRAVTSAYYR 85 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~-~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~ 85 (220)
++|+++|++|||||||+|+|.+..+.... .+..+.+...+.+.+.+ ..+.+|||+|+. .+...+..++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999998765322 23333344444444444 467899999985 44556667889
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCCCH
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDSTNV 164 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 164 (220)
.+|++++|+|+.+..++.. .++..+.. ....|+++++||+|+...+. ++..+. ..++ .++.+||+++.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999988777654 33433322 24679999999999864321 111122 3344 6889999999999
Q ss_pred HHHHHHHHHHHH
Q 027703 165 EAAFEVVIREIY 176 (220)
Q Consensus 165 ~~l~~~l~~~~~ 176 (220)
.++++++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999987664
No 178
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.75 E-value=8.2e-20 Score=141.79 Aligned_cols=75 Identities=9% Similarity=0.211 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...+++++.++++.++| +|++|+.+...+.+.+.++. ++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 33488999999999999 99999999999999998876 6899999999999886 5999999999999999998765
No 179
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.75 E-value=5.8e-20 Score=142.83 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=67.4
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..|++++.++++.++| +|++|+.+...+++.|.++ .++.+++++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHH
Confidence 3488999999999999 9999999999999999887 458899999999999865 9999999999999999887753
No 180
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.75 E-value=3e-19 Score=142.46 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|++++.++++.++| ||++|..+...+++.|.++. .+.++++++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 199 vaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 34488999999999999 99999999999999887764 46899999999999986 9999999999999999988753
No 181
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.75 E-value=2.2e-17 Score=138.39 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=103.4
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCc-------------------------------CCCCCcccceeeeeEEEEE
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNE-------------------------------FDSNSKATIGVEFQTQVVD 57 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~i~ 57 (220)
.+....++|+++|.+++|||||+++|+... ...+..+.++.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 344567999999999999999999995542 1111123344444444444
Q ss_pred eCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCccc---HH---HHHHHHHHHHhhCCCCCc-EEEEEecCC
Q 027703 58 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSS---FD---SVKRWLEELTTHCDTAVG-RMLVGNKCD 130 (220)
Q Consensus 58 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~l~~~~~~~~~-~~~v~~k~D 130 (220)
.++ ..+.+|||||+.++.......+..+|++++|+|+++... |+ ...+.+..+.. ...| +++++||+|
T Consensus 92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D 166 (439)
T 3j2k_7 92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD 166 (439)
T ss_pred cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence 443 588999999999998888888899999999999987532 11 11222222222 2345 889999999
Q ss_pred CCCCC--CC----CHHHHHHHHHHh------CCeEEEeccCCCCCHHHHHH
Q 027703 131 LDSIR--DV----STEEGKSLAEEE------GLFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 131 l~~~~--~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 169 (220)
+.... .. ..++...++... +++++.+||+++.|+.++.+
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 85321 11 112234444443 35789999999999999765
No 182
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.75 E-value=6.8e-21 Score=148.56 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|+.+...+.+.+.++..+ +.+++++||+++++..+||++++|++|+ +..|+++++
T Consensus 137 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 137 ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 33488999999999999 9999999999999999888776 8899999999999999999999999999 888877664
No 183
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.75 E-value=7e-21 Score=149.67 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|+.+...+++.|.++..++.+++++||+++++..+ ||++++|++|+++..|+++++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 33488999999999999 999999999999998887755588999999999999886 999999999999999998875
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 253 ~ 253 (267)
T 2zu0_C 253 K 253 (267)
T ss_dssp H
T ss_pred h
Confidence 3
No 184
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.74 E-value=8.4e-18 Score=142.67 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=96.9
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcC--C-----------------------------CCCcccceeeeeEEEEEeCCe
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEF--D-----------------------------SNSKATIGVEFQTQVVDIDGK 61 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~i~~~~~ 61 (220)
..+||+++|.+|+|||||+++|++... . ....+.++....... +...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FSTH 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--EecC
Confidence 469999999999999999999976511 1 011112222222333 3334
Q ss_pred EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHH------HHHHHHHHHhhCCCCCcEEEEEecCCCCCCC
Q 027703 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDS------VKRWLEELTTHCDTAVGRMLVGNKCDLDSIR 135 (220)
Q Consensus 62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~ 135 (220)
...+.+|||||+.++.......+..+|++++|+|+++..++.. ..+.+..+... ...|+++++||+|+...+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 4688999999999999888899999999999999988654322 11111222221 234689999999987544
Q ss_pred CCCHHHH----HHHHHHh-----CCeEEEeccCCCCCHHH
Q 027703 136 DVSTEEG----KSLAEEE-----GLFFMETSALDSTNVEA 166 (220)
Q Consensus 136 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~v~~ 166 (220)
....++. ..++... .++++++||+++.|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 3333332 2333322 46789999999999985
No 185
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.74 E-value=1.9e-17 Score=135.17 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=89.1
Q ss_pred EEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhC-CCCCcEEEEEecCC
Q 027703 62 EVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR----------RSSFDSVKRWLEELTTHC-DTAVGRMLVGNKCD 130 (220)
Q Consensus 62 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~D 130 (220)
.+.+.+||++|+..++..|..++++++++++|+|+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3788999999999999999999999999999999998 678999888888876542 35689999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 131 LDSIR----------------DVSTEEGKSLAE-----------EEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 131 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+...+ ....+++..++. ..++.+++|||+++.|+.++|+++.+.+.+
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 85322 256778777662 345778899999999999999999988764
No 186
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.74 E-value=7.9e-20 Score=142.43 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccc-cceeeeeecCCCCCCCCCc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELS-VNRVTLVKDGANSSKGSMM 213 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~-a~~~~~~~~G~~~~~g~~~ 213 (220)
...+++++.+|++.++| +|++|+.+...+++.|.++..++.+++++||+++.+..+ ||++++|++|+++..|+++
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 34467999999999999 999999999999999887755688999999999999988 5999999999999988875
No 187
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.73 E-value=7.2e-20 Score=141.50 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=105.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++|+|+||||||||++.|.+. .++..|.+.+++. +.+..-+ +... .........-...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~-i~~v~Q~-~~~~-~~tv~enl~~~~~------- 91 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS-VAYVPQQ-AWIQ-NDSLRENILFGCQ------- 91 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC-EEEECSS-CCCC-SEEHHHHHHTTSC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE-EEEEcCC-CcCC-CcCHHHHhhCccc-------
Confidence 5899999999999999999998 4556788888773 2222111 1111 1122222211111
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCC--CcEEEEEec-CCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTA--VGRMLVGNK-CDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEV 170 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~~k-~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~ 170 (220)
.. ......+.+...........+ .... +..+ ..++....+....+++++.++++.++| +|++|+.+...+++.
T Consensus 92 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 169 (237)
T 2cbz_A 92 LE-EPYYRSVIQACALLPDLEILPSGDRTE-IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169 (237)
T ss_dssp CC-TTHHHHHHHHTTCHHHHTTSTTGGGSE-ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHhhHHHHHhcccccccc-ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 01 111222211111011000000 0000 0000 112222222234488999999999999 999999999999998
Q ss_pred HHH--HHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 171 VIR--EIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 171 l~~--~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
+.+ ...++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus 170 l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 170 VIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp TTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHH
Confidence 852 2234789999999999976 6999999999999999988765
No 188
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.73 E-value=1.7e-17 Score=141.61 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=84.3
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCc------------------CCC----CCcccceeeeeEEEEEeCCeEEEEEEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNE------------------FDS----NSKATIGVEFQTQVVDIDGKEVKAQIW 68 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~------------------~~~----~~~~t~~~~~~~~~i~~~~~~~~~~~~ 68 (220)
.....+|+|+|.+|||||||+++|+... +.+ ...+..+.......+.+.+ ..+.+|
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~li 87 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLL 87 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEE
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEE
Confidence 3456899999999999999999996211 000 0001222223334444444 678999
Q ss_pred ecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 69 DTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 69 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
||||+.++......+++.+|++++|+|+++..+.+....| ..+.. ...|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 9999999988888999999999999999998777776444 33332 3579999999999864
No 189
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.73 E-value=2.3e-17 Score=132.97 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=93.4
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhC-CCCCcEEEEEecC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDIT----------RRSSFDSVKRWLEELTTHC-DTAVGRMLVGNKC 129 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~ 129 (220)
..+.+++||++|+..++..|..++++++++++|+|++ +..++.....|+..+.... ..+.|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3478999999999999999999999999999999998 6778888888888865543 3578999999999
Q ss_pred CCCCCC---------------CCCHHHHHHHHHHh---------------------------CCeEEEeccCCCCCHHHH
Q 027703 130 DLDSIR---------------DVSTEEGKSLAEEE---------------------------GLFFMETSALDSTNVEAA 167 (220)
Q Consensus 130 Dl~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~Sa~~~~~v~~l 167 (220)
|+...+ ....+++..++... .+.+++|||+|..|++.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 985311 12456665554332 356777999999999999
Q ss_pred HHHHHHHHHH
Q 027703 168 FEVVIREIYS 177 (220)
Q Consensus 168 ~~~l~~~~~~ 177 (220)
|+.+.+.+.+
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 190
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.72 E-value=2.7e-19 Score=152.41 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=113.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
.++|+++|.+|+|||||+++|.+..+.....++++.......+.+.+ ...+.||||||+..+.......+..+|++++|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 36899999999999999999998877666665555544444443422 23678899999999988888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHH-HHHHH---HHH--hCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTE-EGKSL---AEE--EGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~-~~~~~---~~~--~~~~~~~~Sa~~~~~v~~l 167 (220)
+|+++....+.... +..+. ....|+++++||+|+...+..... +...+ ... ..++++++||+++.|+.++
T Consensus 83 VDa~dg~~~qt~e~-l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 83 VAADDGVMKQTVES-IQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CBSSSCCCHHHHHH-HHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EECCCCccHHHHHH-HHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 99998776655433 23332 235789999999998643322111 11111 001 1347888999999999999
Q ss_pred HHHHHHHHH
Q 027703 168 FEVVIREIY 176 (220)
Q Consensus 168 ~~~l~~~~~ 176 (220)
++++..++.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999987664
No 191
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=3.5e-20 Score=145.13 Aligned_cols=74 Identities=7% Similarity=0.012 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccc-eeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVN-RVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~-~~~~~~~G~~~~~g~~~~~~ 216 (220)
..+++++.+|++.++| +|++|+.+...+++.+.++.. +++++||+++++..+|| ++++|++|+++..|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 3388999999999999 999999999999998876643 99999999999999999 99999999999999887653
No 192
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.72 E-value=3.7e-19 Score=139.31 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|++++.++++.++| +|++|+.+...+++.+.++. ++.+++++||+++.+. .||++++|++|+++..|+++++.
T Consensus 164 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 34488999999999999 99999999999999888774 4789999999999986 59999999999999999887753
No 193
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.71 E-value=2.2e-19 Score=147.59 Aligned_cols=75 Identities=7% Similarity=0.209 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.+|++.++| +|++|.....++.+.|.++ ..+.+++++||+++.+ ..|||+++|++|+++..|+++++
T Consensus 164 valARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 164 MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp HHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 44488999999999999 9999999999999988764 3478999999998655 56999999999999999998875
No 194
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.71 E-value=8.1e-20 Score=143.84 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.++++.++| +|++|..+...+++.|.++..+ +.+++++||+++.+.. ||++++|++|+++..|+++++
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHH
Confidence 33488999999999999 9999999999999988877543 8899999999999875 999999999999999987765
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.71 E-value=1.1e-16 Score=132.74 Aligned_cols=158 Identities=19% Similarity=0.139 Sum_probs=110.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh----h---hhhHHhhcCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF----R---AVTSAYYRGAV 88 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~----~---~~~~~~~~~~~ 88 (220)
.++++|+||||||||+++|++........+..+..+..+.+..++ ...+.+||++|.... . .........++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 479999999999999999998854222222223344455565554 246788999997421 1 11122345789
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhCC--CCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHH
Q 027703 89 GALVVYDITRRSSFDSVKRWLEELTTHCD--TAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEA 166 (220)
Q Consensus 89 ~~i~v~d~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (220)
.++.++|++ ...+..+..+..++..... ...|.++++||.|+... ...++....+...+..++.+||+++.++++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5677777777766554321 24688899999998643 223344455555678899999999999999
Q ss_pred HHHHHHHHHHH
Q 027703 167 AFEVVIREIYS 177 (220)
Q Consensus 167 l~~~l~~~~~~ 177 (220)
++++|.+.+.+
T Consensus 315 L~~~i~~~l~~ 325 (416)
T 1udx_A 315 LKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=7.2e-18 Score=134.78 Aligned_cols=162 Identities=16% Similarity=0.255 Sum_probs=82.7
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhC-cCCCCCc--------ccceeeeeEEEEEeCCeEEEEEEEecCCc-------c
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARN-EFDSNSK--------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQ-------E 74 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~-~~~~~~~--------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~-------~ 74 (220)
+...++|+++|++|||||||+++|.+. .++..+. ++.........+...+....+.+||++|+ .
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 455699999999999999999999886 5655541 12111111122222344568899999997 3
Q ss_pred hhhhhhH-------HhhcCC-------------cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 75 RFRAVTS-------AYYRGA-------------VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 75 ~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
.+..... .++..+ ++++++.+.+. .+++.... ..+... ....++++++||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCH
Confidence 3333322 232222 22333333222 23444331 223322 235789999999998653
Q ss_pred CCCC--HHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 135 RDVS--TEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+++. .+++..++...++.++++||+++ +++++|+++.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 3322 34677888888999999999999 999999999887754
No 197
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=1.8e-17 Score=139.68 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=96.6
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCC--------cchhhhhhHHh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAG--------QERFRAVTSAY 83 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g--------~~~~~~~~~~~ 83 (220)
...+|+++|++|||||||+|+|.+..+..... +..+.+..... .......+.+|||+| +..+......+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 35789999999999999999999987653222 22233322333 333335788999999 45556667778
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCC-eEEEeccCCCC
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGL-FFMETSALDST 162 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (220)
+..+|++++|+|..+...... .++..+... ...|+++++||+|+.... .+...+. ..+. .++.+||.++.
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCT
T ss_pred HhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccccc
Confidence 899999999999876444333 344443322 468999999999975322 1111111 1222 46789999999
Q ss_pred CHHHHHHHHHHHH
Q 027703 163 NVEAAFEVVIREI 175 (220)
Q Consensus 163 ~v~~l~~~l~~~~ 175 (220)
|+.++++.+.+.+
T Consensus 171 gv~~L~~~i~~~l 183 (456)
T 4dcu_A 171 GLGDLLDAVAEHF 183 (456)
T ss_dssp THHHHHHHHHTTG
T ss_pred chHHHHHHHHhhc
Confidence 9999999987655
No 198
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.71 E-value=2.6e-17 Score=136.85 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=100.0
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhC--------cCCCC---------CcccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARN--------EFDSN---------SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~--------~~~~~---------~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~ 74 (220)
...++|+++|.+|+|||||+++|.+. .+... ..+..++.. ..+.+......+.+|||||+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChH
Confidence 45799999999999999999999873 11110 011222222 333343344678899999999
Q ss_pred hhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHhC
Q 027703 75 RFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV---STEEGKSLAEEEG 150 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~---~~~~~~~~~~~~~ 150 (220)
++.......+..+|++++|+|+++....+. .+++..+... ..| +++++||+|+...... ..++...++...+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 888888888899999999999988765443 4555544432 456 7889999998641111 1124555665544
Q ss_pred -----CeEEEeccCCCCC
Q 027703 151 -----LFFMETSALDSTN 163 (220)
Q Consensus 151 -----~~~~~~Sa~~~~~ 163 (220)
++++.+||+++.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999877
No 199
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=1.2e-16 Score=138.06 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=103.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCc----ccceeeeeEEEE------------EeCCeEEEEEEEecCCcchhh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSK----ATIGVEFQTQVV------------DIDGKEVKAQIWDTAGQERFR 77 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~----~t~~~~~~~~~i------------~~~~~~~~~~~~d~~g~~~~~ 77 (220)
.++|+++|.+|+|||||+++|.+..+..... ++.+........ ........+.+|||||+..|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4689999999999999999998875543221 111111110000 000011258899999999888
Q ss_pred hhhHHhhcCCcEEEEEEeCCC---cccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC------------HH--
Q 027703 78 AVTSAYYRGAVGALVVYDITR---RSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS------------TE-- 140 (220)
Q Consensus 78 ~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~------------~~-- 140 (220)
..+...+..+|++++|+|+++ +++++.+. .+.. ...|+++++||+|+....... .+
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 888888899999999999998 44444332 2222 357999999999986422110 01
Q ss_pred ---------HHHHHHHHh---------------CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 141 ---------EGKSLAEEE---------------GLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 141 ---------~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+....+.+. .++++.+||+++.|+.+++++|..++..
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 111112221 2378889999999999999999987754
No 200
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.70 E-value=8e-17 Score=132.05 Aligned_cols=146 Identities=9% Similarity=0.044 Sum_probs=103.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
+|+++|.+++|||||+++|+ .+..+.+.....+...+ ..+.+|||||+.++.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 22222333333333333 468899999999887777778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCCcE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHh---CCeEEE--eccCC---CCC
Q 027703 96 ITRRSSFDSVKRWLEELTTHCDTAVGR-MLVGN-KCDLDSIRDVS--TEEGKSLAEEE---GLFFME--TSALD---STN 163 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~v~~-k~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 163 (220)
+. ..+....+++..+... ..|. +++.| |.|+ ...... .++.+.++... .++++. +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 4444455555554433 3565 77888 9998 422111 13344444433 368999 99999 999
Q ss_pred HHHHHHHHHHHHHH
Q 027703 164 VEAAFEVVIREIYS 177 (220)
Q Consensus 164 v~~l~~~l~~~~~~ 177 (220)
++++++.|.+.+..
T Consensus 167 i~~L~~~l~~~~~~ 180 (370)
T 2elf_A 167 VDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988754
No 201
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.70 E-value=9.2e-17 Score=133.15 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=105.4
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc-------CCCC---------CcccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE-------FDSN---------SKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~-------~~~~---------~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~ 76 (220)
+.++|+++|..++|||||+++|.+.. +... .....++.. ..+.+......+.+|||||+.++
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 46899999999999999999998741 1100 011122222 22333333457889999999988
Q ss_pred hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHhC--
Q 027703 77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV---STEEGKSLAEEEG-- 150 (220)
Q Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~---~~~~~~~~~~~~~-- 150 (220)
.......+..+|++++|+|+++....+... ++..+.. ...| +++++||+|+...... ..++.+.++...+
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 777778889999999999999866554433 3333332 2466 6789999998641111 1234556666654
Q ss_pred ---CeEEEeccCCCCC----------HHHHHHHHHHHH
Q 027703 151 ---LFFMETSALDSTN----------VEAAFEVVIREI 175 (220)
Q Consensus 151 ---~~~~~~Sa~~~~~----------v~~l~~~l~~~~ 175 (220)
++++.+||+++.| +.++++.|.+.+
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 6899999998764 677777776544
No 202
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.70 E-value=2.5e-17 Score=138.01 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=101.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhC--cCCCCC-----------------------------cccceeeeeEEEEEeCC
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDSNS-----------------------------KATIGVEFQTQVVDIDG 60 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~i~~~~ 60 (220)
...++|+++|..|+|||||+++|+.. .+...+ .+..++......+ ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence 35699999999999999999999864 222110 1112222222223 33
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHH----HHhhC-CCCCcEEEEEecCCCCCCC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE----LTTHC-DTAVGRMLVGNKCDLDSIR 135 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~----l~~~~-~~~~~~~~v~~k~Dl~~~~ 135 (220)
....+.+|||||+.++.......+..+|++++|+|+++ .+|+....|... +.... ....++++++||+|+....
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 34678999999999998888888999999999999998 677654332211 11111 1224678999999986521
Q ss_pred --C----CCHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHHH
Q 027703 136 --D----VSTEEGKSLAEEEG-----LFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 136 --~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 169 (220)
+ ...++.+.++...+ ++++++||+++.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 11344666666654 6799999999999975543
No 203
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.1e-17 Score=141.59 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=100.3
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC-------------------------------cccceeeeeEEEEEeCC
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS-------------------------------KATIGVEFQTQVVDIDG 60 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~i~~~~ 60 (220)
...++|+++|.+|+|||||+++|++....... .+.+++......+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 45789999999999999999999876332211 1222333333344443
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhC-CCCCcEEEEEecCCCCCCCC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SFDSVKRWLEELTTHC-DTAVGRMLVGNKCDLDSIRD 136 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~v~~k~Dl~~~~~ 136 (220)
...+.+|||||+..+.......+..+|++++|+|+++.. .+.....+...+.... ....|+++++||+|+...+.
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 357889999999998888888899999999999998642 1111111111211111 12245889999999875332
Q ss_pred CCHHH----HHHHHHHh-----CCeEEEeccCCCCCHHHH
Q 027703 137 VSTEE----GKSLAEEE-----GLFFMETSALDSTNVEAA 167 (220)
Q Consensus 137 ~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~~v~~l 167 (220)
...++ ...++... .++++.+||+++.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22222 33333333 468999999999999876
No 204
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.69 E-value=2e-17 Score=143.37 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|+++++++++.++| ||++|+.+...+.+.+.++. ++.++++++|+++.+. .||++++|++|+++++|+++++.
T Consensus 489 ~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 44488999999999999 99999999999999888764 4899999999999986 69999999999999999988763
No 205
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=5.9e-16 Score=129.68 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=102.2
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCc---CCCC---------Ccc---------------------cceeeeeEEEEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNE---FDSN---------SKA---------------------TIGVEFQTQVVD 57 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~---~~~~---------~~~---------------------t~~~~~~~~~i~ 57 (220)
....++|+++|..++|||||+++|++.. +... ... .++.......
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~-- 98 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY-- 98 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--
Confidence 3467999999999999999999998654 1110 001 1111111112
Q ss_pred eCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC
Q 027703 58 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV 137 (220)
Q Consensus 58 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~ 137 (220)
+......+.+|||||+.++.......+..+|++++|+|+++....+. .+++..+... ...|+++++||+|+......
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL--GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence 22234578899999999888888888899999999999988654433 3344333332 22368899999998652211
Q ss_pred ----CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHHHH
Q 027703 138 ----STEEGKSLAEEEG-----LFFMETSALDSTNVEAAFE 169 (220)
Q Consensus 138 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 169 (220)
..++...++...+ ++++.+||+++.|+.++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1234555666666 6789999999999987533
No 206
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.68 E-value=6.9e-16 Score=121.00 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=84.5
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhh-------
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYY------- 84 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~------- 84 (220)
..++|+++|.+|+|||||+++|++..+..... ++.+.......+..++ ..+.+|||||+..+......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 46999999999999999999999987533222 2223444445555555 4788999999876544333332
Q ss_pred --cCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCC--CcEEEEEecCCCCCCCCCCHHH
Q 027703 85 --RGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTA--VGRMLVGNKCDLDSIRDVSTEE 141 (220)
Q Consensus 85 --~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~v~~k~Dl~~~~~~~~~~ 141 (220)
..++++++|++++... +... ..|+..+....... .|+++++||+|+...+....++
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~ 173 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYET 173 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHH
Confidence 2789999999887654 3332 35666665443322 4899999999986545544443
No 207
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=1e-16 Score=127.86 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=98.9
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC------cccc----------------------eee------------
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS------KATI----------------------GVE------------ 50 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~------~~t~----------------------~~~------------ 50 (220)
....++|+|+|.+|||||||+++|.+..+.+.. .++. +.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999999874222 1210 000
Q ss_pred ---------eeEEEEEeC-CeEEEEEEEecCCcc-------------hhhhhhHHhhcCCcEEE-EEEeCCCcccHHHHH
Q 027703 51 ---------FQTQVVDID-GKEVKAQIWDTAGQE-------------RFRAVTSAYYRGAVGAL-VVYDITRRSSFDSVK 106 (220)
Q Consensus 51 ---------~~~~~i~~~-~~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~ 106 (220)
.....+.+. .....+.+|||||.. .+......++..++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000000 012578899999964 23445566778888666 689988755444433
Q ss_pred HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh--C-CeEEEeccCCCCCHHHHHHHHHH
Q 027703 107 RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE--G-LFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 107 ~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
.++..+ .....|+++++||.|+........+......... + .+++.+||+++.|+.++++++.+
T Consensus 183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 333333 2345799999999998654432222211100011 1 24566999999999999999876
No 208
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.68 E-value=2.9e-19 Score=137.49 Aligned_cols=77 Identities=13% Similarity=0.338 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|++++.++++.++| +|++|+.+...+++.+.+...++.+++++||+++.+. .||++++|++|+++..|+++++.
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 33488999999999999 9999999999999875322234789999999999986 59999999999999999887653
No 209
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.67 E-value=2e-18 Score=131.15 Aligned_cols=65 Identities=5% Similarity=0.037 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCC
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGAN 206 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~ 206 (220)
.+++++.++++.++| +|++|+.+...+++.+.++..++.+++++||+++++..+||+++++. |+|
T Consensus 144 laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 144 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 377899999999999 99999999999999999887678999999999999999999987654 544
No 210
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.66 E-value=3.9e-17 Score=141.90 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..|+++++++++.++| ||++|+.+...+.+.+.++.. +.++++++|+++.+. .||++++|++|++++.|+++++.
T Consensus 493 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 3488999999999999 999999999999998887655 789999999999986 59999999999999999998874
No 211
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.66 E-value=1.9e-17 Score=143.50 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..|+++++++++.++| ||++|+.+...+.+.+.++. ++.++++++|+++.+. .||++++|++|++++.|+++++.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHH
Confidence 3488999999999999 99999999999999888765 4899999999999886 69999999999999999988763
No 212
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.66 E-value=1.6e-15 Score=133.12 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=82.4
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc------------------ccceeeeeEEEEEeCCeEEEEEEEecCCc
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK------------------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQ 73 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~------------------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~ 73 (220)
+...+++|+|++|+|||||+++|++........ ..+++......+.. ..+.+++|||+|+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RGHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TTEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CCEEEEEEeCCCc
Confidence 456889999999999999999998654321110 11222222333333 3478899999999
Q ss_pred chhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC
Q 027703 74 ERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132 (220)
Q Consensus 74 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~ 132 (220)
.++......+++.+|+.++|+|.++....+.. .++..+.. ...|+++++||.|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh
Confidence 99888888899999999999998876655443 44444433 257899999999976
No 213
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.66 E-value=7.8e-18 Score=142.32 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=104.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEE
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVV 93 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 93 (220)
..+|+++|..++|||||+++|.+..+.....++++.......+..++ ..+.+|||||+..|...+...+..+|++++|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 46899999999999999999998766554443333332222333344 3678899999998888888888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHH----HHHHHHH--hCCeEEEeccCCCCCHHHH
Q 027703 94 YDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEE----GKSLAEE--EGLFFMETSALDSTNVEAA 167 (220)
Q Consensus 94 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~----~~~~~~~--~~~~~~~~Sa~~~~~v~~l 167 (220)
+|+++....+.. +.+..+.. ...|+++++||+|+.......... ...+... ..++++++||+++.|+.++
T Consensus 82 Vda~~g~~~qT~-e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 82 VAADDGVMPQTI-EAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EETTTBSCTTTH-HHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred eecccCccHHHH-HHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 999884332222 12222222 357899999999986432111000 0001111 1368999999999999999
Q ss_pred HHHHHH
Q 027703 168 FEVVIR 173 (220)
Q Consensus 168 ~~~l~~ 173 (220)
++++..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 998864
No 214
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.66 E-value=1.7e-17 Score=143.61 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..|++++++|++.++| ||++|+.+...+.+.+.+. .++.|+++++|+++.+.. ||++++|++|+++++|+++++.
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 3488999999999999 9999999988888877655 457899999999999864 9999999999999999988763
No 215
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.66 E-value=5.3e-17 Score=137.09 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=88.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhC--cCCC-----------------------------CCcccceeeeeEEEEEeCC
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDS-----------------------------NSKATIGVEFQTQVVDIDG 60 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~i~~~~ 60 (220)
...++|+++|..++|||||+++|+.. .+.. +....+++......+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 46799999999999999999999752 1210 0011112222222333333
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRD 136 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~ 136 (220)
..+.+|||||+.+|.......+..+|++++|+|+++.. +|+....+...+........| +++++||+|+.....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 57889999999988887778889999999999998852 232111222222111112455 889999999853210
Q ss_pred ------CCHHHHHHHHHHh-------CCeEEEeccCCCCCHHHHH
Q 027703 137 ------VSTEEGKSLAEEE-------GLFFMETSALDSTNVEAAF 168 (220)
Q Consensus 137 ------~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~l~ 168 (220)
...++...++... +++++++||+++.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1122355666555 4679999999999998765
No 216
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=9.9e-18 Score=145.61 Aligned_cols=76 Identities=8% Similarity=0.180 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|+++++++++.++| ||++|+.+...+.+.+.++. ++.|+++++|+++.+.. ||++++|++|+++++|+++++.
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 33488999999999999 99999999999999887764 58999999999999875 9999999999999999998864
No 217
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.65 E-value=2.5e-16 Score=128.94 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=104.0
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeE-------------EE------------------------
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQT-------------QV------------------------ 55 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~-------------~~------------------------ 55 (220)
...+|+|+|++|||||||+++|.+..+.+.+..+.+..+.. ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999987744443222211100 00
Q ss_pred ---------------EEe-CCeEEEEEEEecCCcchh-------------hhhhHHhhcCCcEEEEEEeCCCcccHHHHH
Q 027703 56 ---------------VDI-DGKEVKAQIWDTAGQERF-------------RAVTSAYYRGAVGALVVYDITRRSSFDSVK 106 (220)
Q Consensus 56 ---------------i~~-~~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 106 (220)
+.+ ......+.+|||||.... ......++..+++++++++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 000 011235789999997654 445667889999999999865433222 2
Q ss_pred HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHHH
Q 027703 107 RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 107 ~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
.|+..+........|+++++||.|+........+.+.......+..|+.+++..+.++.+.+.++....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 333334444445678999999999875554444444444444567889999998888877766554443
No 218
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.65 E-value=1.1e-15 Score=138.54 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=105.2
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCc-------CC-----C--CCcccceeeeeEEEEEeCCeEEEEEEEecCCcch
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNE-------FD-----S--NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~-------~~-----~--~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~ 75 (220)
...+.++|+++|..++|||||+++|.+.. +. + ..+++.++......+.++.....+.+|||||+.+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998741 00 0 0111122211222233444446789999999998
Q ss_pred hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCCCCCC---CHHHHHHHHHHhC-
Q 027703 76 FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDSIRDV---STEEGKSLAEEEG- 150 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~~~~~---~~~~~~~~~~~~~- 150 (220)
+.......+..+|++++|+|+++....+. .+++..+... ..| +++++||+|+...... ..++...++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88777788899999999999988654433 3444444332 456 6889999998642111 1234556666554
Q ss_pred ----CeEEEeccCCC--------CCHHHHHHHHHHHH
Q 027703 151 ----LFFMETSALDS--------TNVEAAFEVVIREI 175 (220)
Q Consensus 151 ----~~~~~~Sa~~~--------~~v~~l~~~l~~~~ 175 (220)
++++.+||+++ .++.++++.|.+.+
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 34666666665533
No 219
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=1.2e-17 Score=144.79 Aligned_cols=76 Identities=11% Similarity=0.219 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|+++++++++.++| ||++|+.+...+.+.+.++ .++.|+++++|+++.+. .||++++|++|+++++|+++++.
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 33488999999999999 9999999999999988765 45899999999999986 79999999999999999998763
No 220
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=129.97 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=80.3
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc--------ccceeeeeEEEEEeCCeEEEEEEEecCCcchhh----
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK--------ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFR---- 77 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~--------~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~---- 77 (220)
-....++|+|+|++|||||||+++|.+..++..+. ++.........+...+....+.+||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 34556899999999999999999999998743321 122111111111122333578899999975431
Q ss_pred ---hh------------------hHHhhcCCcEEEEEEeCCCc-ccHHHHH-HHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 78 ---AV------------------TSAYYRGAVGALVVYDITRR-SSFDSVK-RWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 78 ---~~------------------~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
.. ...++.++++.+++|..+.. .++.... .|+..+. ...|+++|+||+|+...
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence 10 01123344433334433322 3444443 4555542 35889999999997654
Q ss_pred CCCCH--HHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Q 027703 135 RDVST--EEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
+.+.. .++...+...++.++.+|+.++.++.+++..+.+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 43333 4566777788999999999999999887765553
No 221
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.63 E-value=2.4e-16 Score=132.82 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=99.2
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhC--cCCCC-----------------------------CcccceeeeeEEEEEeCC
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARN--EFDSN-----------------------------SKATIGVEFQTQVVDIDG 60 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~i~~~~ 60 (220)
...++|+++|.+++|||||+++|++. .+... ..+.+++......+. .
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--C
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--c
Confidence 35799999999999999999999864 12110 001122222222333 3
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cHH---HHHHHHHHHHhhCCCCCc-EEEEEecCCCCC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SFD---SVKRWLEELTTHCDTAVG-RMLVGNKCDLDS 133 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~ 133 (220)
....+.+|||||+.++.......+..+|++++|+|+++.. +|+ ...+++..+.. ...| +++++||+|+..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 3467899999999998888888899999999999998753 221 22222222222 2344 888999999863
Q ss_pred CCCC----CHHHHHHHHHHhC-----CeEEEeccCCCCCHHHH
Q 027703 134 IRDV----STEEGKSLAEEEG-----LFFMETSALDSTNVEAA 167 (220)
Q Consensus 134 ~~~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l 167 (220)
.... ..++.+.++...+ ++++++||+++.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 2111 1223555555554 68999999999998754
No 222
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.9e-18 Score=145.03 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHH-HHhhhhhcCcchhhhccccceeeeeec--CCCCCCCCCccc
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIY-SNISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSMMDF 215 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~-~~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~~~~ 215 (220)
.|++++.++++.++| |+++|.....++.+.|.++.. .+.+++++|||++++..+|||+++|++ |+++..|+|+++
T Consensus 478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 367899999999999 999999999999999998875 489999999999999999999999997 899999999876
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 558 ~ 558 (608)
T 3j16_B 558 L 558 (608)
T ss_dssp H
T ss_pred h
Confidence 3
No 223
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.63 E-value=1.4e-17 Score=132.14 Aligned_cols=76 Identities=13% Similarity=0.341 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
...|++++.++++.++| +|++|+.+...+++.+.+.+.++.+++++||+++.+. .||++++|++|+++..|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHH
Confidence 44488999999999999 9999999999999865322234789999999999886 5999999999999999988765
No 224
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.63 E-value=6.8e-15 Score=115.79 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=81.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhH-------Hh
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTS-------AY 83 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~-------~~ 83 (220)
...++|+++|.+|+|||||+|+|++..+..... ++.+.......+... ...+.+|||||+..+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 346999999999999999999999987643222 222222333333333 36788999999865432111 11
Q ss_pred --hcCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhCCCC--CcEEEEEecCCCCCCCCCCHHH
Q 027703 84 --YRGAVGALVVYDITRRSSFDSV-KRWLEELTTHCDTA--VGRMLVGNKCDLDSIRDVSTEE 141 (220)
Q Consensus 84 --~~~~~~~i~v~d~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~v~~k~Dl~~~~~~~~~~ 141 (220)
...+|++++|+|.+.. ++... ..|+..+....... .|+++++||+|+...+....++
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence 2468999999998653 33332 35666665443322 6899999999986544444443
No 225
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.63 E-value=1.8e-14 Score=126.84 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=86.2
Q ss_pred CCCCCceeeEEEEEECCCCCcHHHHHHHHhhCc--CCCCC----------------cccceeeeeEEEEEeCCeEEEEEE
Q 027703 6 RGGGGEEYLFKIVLIGDSAVGKSNLLSRFARNE--FDSNS----------------KATIGVEFQTQVVDIDGKEVKAQI 67 (220)
Q Consensus 6 ~~~~~~~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~~----------------~~t~~~~~~~~~i~~~~~~~~~~~ 67 (220)
+.........+|+|+|.+|+|||||+++|+... +.... ....++......+.+. ...+++
T Consensus 4 ~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~l 81 (691)
T 1dar_A 4 KVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINI 81 (691)
T ss_dssp TCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEE
T ss_pred cccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEE
Confidence 344556778999999999999999999998421 11000 1111222223333343 367899
Q ss_pred EecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 68 WDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 68 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
|||||+.++...+..+++.+|++++|+|+++..+++....|. .+.. ...|+++++||+|+..
T Consensus 82 iDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 82 IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp ECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred EECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 999999988888889999999999999999988887765554 3332 2578999999999864
No 226
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.62 E-value=1.7e-15 Score=133.50 Aligned_cols=162 Identities=13% Similarity=0.157 Sum_probs=106.2
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceee--e-----eEEEEEe--------------------------
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVE--F-----QTQVVDI-------------------------- 58 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~--~-----~~~~i~~-------------------------- 58 (220)
..++|+|+|++|+|||||+|+|++..+.+... ++.... . ...++.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999987544332 222100 0 0001111
Q ss_pred --------------------CCeE--EEEEEEecCCcch---hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q 027703 59 --------------------DGKE--VKAQIWDTAGQER---FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT 113 (220)
Q Consensus 59 --------------------~~~~--~~~~~~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~ 113 (220)
+... ..+.+|||||... .......++..+|++++|+|+++..+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000 2478999999754 23445568899999999999998888777655543332
Q ss_pred hhCCCCCcEEEEEecCCCCCCCCCCHH---H-------HHHH----HH-H--------hCCeEEEeccC-----------
Q 027703 114 THCDTAVGRMLVGNKCDLDSIRDVSTE---E-------GKSL----AE-E--------EGLFFMETSAL----------- 159 (220)
Q Consensus 114 ~~~~~~~~~~~v~~k~Dl~~~~~~~~~---~-------~~~~----~~-~--------~~~~~~~~Sa~----------- 159 (220)
....|+++|+||+|+........+ + .... +. . ....++.+||+
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 224679999999998643312111 1 1111 11 1 12368999999
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 027703 160 ---DSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 160 ---~~~~v~~l~~~l~~~~~~ 177 (220)
++.|+.++++.+.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999988865
No 227
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=2.8e-15 Score=120.40 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=97.1
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc------cc--ceeee----------eEE------------------
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK------AT--IGVEF----------QTQ------------------ 54 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~------~t--~~~~~----------~~~------------------ 54 (220)
.....+|+|+|.+|||||||+|+|++..+.+... ++ ...+. ..+
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3456799999999999999999999988632221 10 00000 000
Q ss_pred ---------------------EEE-eCCeEEEEEEEecCCcch-------------hhhhhHHhhcCCcEEEEEEeCCCc
Q 027703 55 ---------------------VVD-IDGKEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALVVYDITRR 99 (220)
Q Consensus 55 ---------------------~i~-~~~~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~ 99 (220)
.+. .......+.+|||||... +......++..+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 011124688999999753 344566688999999999997433
Q ss_pred c-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE---eccCC---CCCHHHHHHHHH
Q 027703 100 S-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME---TSALD---STNVEAAFEVVI 172 (220)
Q Consensus 100 ~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~Sa~~---~~~v~~l~~~l~ 172 (220)
. .......+...+ .....|+++++||.|+........+.........+..+++ .|+.+ +.++.++++.+.
T Consensus 181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 2 111111222222 2346799999999998654432222221100111245666 45555 789999999988
Q ss_pred HHHHH
Q 027703 173 REIYS 177 (220)
Q Consensus 173 ~~~~~ 177 (220)
+.+..
T Consensus 258 ~~~~~ 262 (315)
T 1jwy_B 258 LYFKN 262 (315)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 87765
No 228
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.2e-17 Score=142.79 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecC
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDG 204 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G 204 (220)
.|++++.++++.++| |+++|.....++.+.|.++..+ +.+++++|||++++..+|||+++|++|
T Consensus 396 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 377999999999999 9999999999999999988876 889999999999999999999999974
No 229
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.60 E-value=5.2e-16 Score=145.06 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=110.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEE--------EEEecCCcc--hhhhhhHHhhc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKA--------QIWDTAGQE--RFRAVTSAYYR 85 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~--------~~~d~~g~~--~~~~~~~~~~~ 85 (220)
+++|+|++|||||||++.|.+. .++..|.+.++|.+++- .+--+++.+ .......+..-
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~ 514 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISL 514 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHT
T ss_pred EEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhh
Confidence 6899999999999999999998 45567888888843210 000111111 00112222211
Q ss_pred CCcEEEEEEeCCCcccHHHHHHHHH------HHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEE--ec
Q 027703 86 GAVGALVVYDITRRSSFDSVKRWLE------ELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TS 157 (220)
Q Consensus 86 ~~~~~i~v~d~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~S 157 (220)
.. ...+.+++.+... .+....+. .-..+.-.-..|.....+....||++.+++++.++| ||
T Consensus 515 g~----------~~~~~~~v~~a~~~a~l~~~i~~lp~G-~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tS 583 (1321)
T 4f4c_A 515 GK----------EGITREEMVAACKMANAEKFIKTLPNG-YNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 583 (1321)
T ss_dssp TC----------TTCCHHHHHHHHHHTTCHHHHHHSTTT-TSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred hc----------ccchHHHHHHHHHHccchhHHHcCCCC-CccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccc
Confidence 10 1123333332221 12222221 111221111223322233344488999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 158 ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 158 a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++|.++-..+.+.+ +.+.+++|+++++|++..+. .||+|++|++|+|+++|+++|+.
T Consensus 584 aLD~~te~~i~~~l-~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 584 ALDAESEGIVQQAL-DKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp TSCTTTHHHHHHHH-HHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCHHHHHHHHHHH-HHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHH
Confidence 99999865555555 55667899999999999865 69999999999999999988764
No 230
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.59 E-value=6.1e-14 Score=123.52 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=83.6
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhh--CcCCCCC----------------cccceeeeeEEEEEeCCeEEEEEEEecCC
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFAR--NEFDSNS----------------KATIGVEFQTQVVDIDGKEVKAQIWDTAG 72 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~--~~~~~~~----------------~~t~~~~~~~~~i~~~~~~~~~~~~d~~g 72 (220)
.+...+|+|+|.+|+|||||+++|+. ..+.... .+..++......+.+.+ ..+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 45578999999999999999999985 2221100 11112222233344443 6788999999
Q ss_pred cchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
+.++......+++.+|++++|+|+++..+.+....|. .+.. ...|+++++||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 9988888888999999999999999988887765543 3333 2578999999999864
No 231
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.59 E-value=3.2e-16 Score=135.66 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=79.0
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCc-------------------------------CCCCCcccceeeeeEEEEEeC
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNE-------------------------------FDSNSKATIGVEFQTQVVDID 59 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~i~~~ 59 (220)
....++|+++|.+++|||||+++|++.. +.....+++++......+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3467999999999999999999996431 00111222233333333332
Q ss_pred CeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc---cH---HHHHHHHHHHHhhCCCCC-cEEEEEecCCCC
Q 027703 60 GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS---SF---DSVKRWLEELTTHCDTAV-GRMLVGNKCDLD 132 (220)
Q Consensus 60 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~l~~~~~~~~-~~~~v~~k~Dl~ 132 (220)
....+.+|||||+..+.......+..+|++++|+|+++.. .+ ....+.+..+... .. ++++++||+|+.
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 3357889999999988777777888999999999997532 11 1111122222222 34 488899999986
Q ss_pred CCCCCCH----HHHHHHH-HHhC-----CeEEEeccCCCCCHH
Q 027703 133 SIRDVST----EEGKSLA-EEEG-----LFFMETSALDSTNVE 165 (220)
Q Consensus 133 ~~~~~~~----~~~~~~~-~~~~-----~~~~~~Sa~~~~~v~ 165 (220)
....... .+...++ ...+ ++++.+||+++.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 4222111 2233333 3233 378999999999998
No 232
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.59 E-value=1.2e-17 Score=144.79 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=68.0
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeec--CCCCCCCCCccc
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSMMDF 215 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~~~~ 215 (220)
.|++++.++++.++| |+++|..+..++.+.|.++..+ +.+++++|||++++..+|||+++|++ |+++..|+++++
T Consensus 482 iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 482 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHH
Confidence 377999999999999 9999999999999999888754 89999999999999999999999997 777778998775
Q ss_pred c
Q 027703 216 S 216 (220)
Q Consensus 216 ~ 216 (220)
.
T Consensus 562 ~ 562 (607)
T 3bk7_A 562 R 562 (607)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.59 E-value=6.6e-17 Score=151.04 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 140 EEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 140 ~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
..||++++++++.++| ||++|.++-..+.+.|. ...++.|+++++|+++.+. .||+|+||++|+|++.|+++++.
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~-~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALD-RAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT-TTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHH-HHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 3488999999999999 99999998766666554 4456799999999999977 59999999999999999998864
No 234
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.58 E-value=2.3e-17 Score=141.35 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=67.7
Q ss_pred HHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHH-HHhhhhhcCcchhhhccccceeeeeec--CCCCCCCCCcccc
Q 027703 142 GKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIY-SNISRKVLNSDAYKAELSVNRVTLVKD--GANSSKGSMMDFS 216 (220)
Q Consensus 142 ~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~-~~~~~~~~~h~~~~~~~~a~~~~~~~~--G~~~~~g~~~~~~ 216 (220)
|++++.++++.++| |+++|..+..++.+.|.++.. .+.+++++|||++++..+|||+++|++ |+++..|+++++.
T Consensus 413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 77999999999999 999999999999999998875 489999999999999999999999997 6777789987753
No 235
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.58 E-value=9.4e-16 Score=142.98 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
...|+++++++++.++| ||++|..+...+.+.+. ...++.|+++++|+++.+.. ||+|++|++|+++++|+++++.
T Consensus 535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~-~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALD-KAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH-HHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHH
Confidence 33488999999999999 99999988776666554 44568999999999999876 9999999999999999987753
No 236
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=1.4e-15 Score=125.69 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=48.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEE---------------------eCC-eEEEEEEEecCC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD---------------------IDG-KEVKAQIWDTAG 72 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~---------------------~~~-~~~~~~~~d~~g 72 (220)
+||+++|.+|||||||+|+|++........+..+..+..+... +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999999873322223223333333321 122 247899999999
Q ss_pred cchh----hhhhH---HhhcCCcEEEEEEeCCCc
Q 027703 73 QERF----RAVTS---AYYRGAVGALVVYDITRR 99 (220)
Q Consensus 73 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 99 (220)
.... ..... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 11222 346889999999999875
No 237
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.57 E-value=1.8e-13 Score=116.91 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=78.1
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCc--CCCC------------------C--cccceeeeeEEEEEeCCeEEEEEEEe
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNE--FDSN------------------S--KATIGVEFQTQVVDIDGKEVKAQIWD 69 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~--~~~~------------------~--~~t~~~~~~~~~i~~~~~~~~~~~~d 69 (220)
....+|+|+|.+|+|||||+++|+... +... . ....++......+.. ....+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HDCLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TTEEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CCeEEEEEE
Confidence 456899999999999999999998631 1000 0 001111111122333 336789999
Q ss_pred cCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 70 TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 70 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
|||+.++......++..+|++++|+|+++...... ..++..+ .....|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 99999888888888999999999999988654333 2222222 234688999999999864
No 238
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.57 E-value=3.5e-16 Score=145.84 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
.|+++++++++.++| ||++|..+...+.+.+.+ ..++.|+++++|+++.+. .||||++|++|++++.|+++++.
T Consensus 1182 iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~-~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp HHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH-HSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH-hCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHH
Confidence 388999999999999 999999998888887755 445889999999999986 49999999999999999988753
No 239
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.54 E-value=2.7e-13 Score=110.20 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=58.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE---------------EEEEEEecCCcchhh--
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE---------------VKAQIWDTAGQERFR-- 77 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~---------------~~~~~~d~~g~~~~~-- 77 (220)
++++++|.+|||||||+|+|++..+.....+..+..+..+.+.+++.. ..+.+||++|+.+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999987544333333444445556555421 478999999987542
Q ss_pred -----hhhHHhhcCCcEEEEEEeCCC
Q 027703 78 -----AVTSAYYRGAVGALVVYDITR 98 (220)
Q Consensus 78 -----~~~~~~~~~~~~~i~v~d~~~ 98 (220)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 123345789999999999976
No 240
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.54 E-value=4.3e-13 Score=118.27 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=83.7
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhC--cCCCCC----------------cccceeeeeEEEEEeC-----CeEEEEE
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARN--EFDSNS----------------KATIGVEFQTQVVDID-----GKEVKAQ 66 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~--~~~~~~----------------~~t~~~~~~~~~i~~~-----~~~~~~~ 66 (220)
..+...+|+|+|..|+|||||+++|+.. .+...+ ...+++......+.+. +..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 3456789999999999999999999753 111100 1111222222233332 2337889
Q ss_pred EEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 67 IWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 67 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
+|||||+.+|.......++.+|++++|+|+++....+....| ..... ...|+++++||.|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 999999999888888899999999999999987766655433 33222 3578999999999864
No 241
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.53 E-value=4.6e-14 Score=116.20 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=96.4
Q ss_pred EEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhC-CCCCcEE
Q 027703 55 VVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR----------RSSFDSVKRWLEELTTHC-DTAVGRM 123 (220)
Q Consensus 55 ~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~l~~~~-~~~~~~~ 123 (220)
.+.+.+ +.+++||++|+..++..|..++++++++++|||+++ ..+|.....|+..+.... ..+.|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 344443 789999999999999999999999999999999998 889999999999876543 3578999
Q ss_pred EEEecCCCCCCCC---C---------------------------CHHHHHHHHHH-------------hCCeEEEeccCC
Q 027703 124 LVGNKCDLDSIRD---V---------------------------STEEGKSLAEE-------------EGLFFMETSALD 160 (220)
Q Consensus 124 ~v~~k~Dl~~~~~---~---------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~ 160 (220)
++|||+|+...+. . ..+++..++.. ..+.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999853221 1 13556665421 135667899999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027703 161 STNVEAAFEVVIREIYS 177 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~ 177 (220)
+.|+.++|+++.+.+.+
T Consensus 369 ~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999888764
No 242
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.53 E-value=8.6e-17 Score=141.52 Aligned_cols=76 Identities=8% Similarity=0.093 Sum_probs=67.8
Q ss_pred HHHHHHHHHhC--CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCC
Q 027703 140 EEGKSLAEEEG--LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSK 209 (220)
Q Consensus 140 ~~~~~~~~~~~--~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~ 209 (220)
..|++++.+|+ +.++| ||++|+.+...+++.|.++..++.+++++|||++.+. .||++++| ++|+++.+
T Consensus 212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAA 290 (670)
T ss_dssp HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEE
T ss_pred HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEe
Confidence 33889999988 99999 9999999999999999988767899999999999876 59999999 89999999
Q ss_pred CCCcccc
Q 027703 210 GSMMDFS 216 (220)
Q Consensus 210 g~~~~~~ 216 (220)
|+++++.
T Consensus 291 g~~~~~~ 297 (670)
T 3ux8_A 291 GTPEEVM 297 (670)
T ss_dssp ECHHHHH
T ss_pred cCHHHHh
Confidence 9887753
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.53 E-value=5.1e-15 Score=118.26 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=106.2
Q ss_pred HHHHHHhhCcCC-CCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcc-cHHHHH
Q 027703 29 NLLSRFARNEFD-SNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRS-SFDSVK 106 (220)
Q Consensus 29 Tll~~l~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~ 106 (220)
+|+.++....|. ..+.+|++.... ..+..++ .+.+||+ ++++..++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888898 888899884433 2222222 6789999 7788888889999999999999999987 788898
Q ss_pred HHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhC--CeEEEeccCCCCCHHHHHHHHHH
Q 027703 107 RWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEG--LFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 107 ~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
.|+..+.. ...|+++++||+|+...+. .+++..++...+ ..++++||+++.|++++|+++..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887654 3689999999999875332 244666666666 89999999999999999988753
No 244
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.6e-15 Score=131.29 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS 207 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~ 207 (220)
...|++++.++++.++| +|++|+.....+++++.++..++.+++++||+++++..+||++++|++|..+
T Consensus 230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 44488999999999999 9999999999999999988777899999999999999999999999987643
No 245
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.2e-15 Score=130.63 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS 207 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~ 207 (220)
...|++++.++++.++| ||++|......++++|.++.. +.+++++||+++++..+||++++|++|...
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCccc
Confidence 34488999999999999 999999999999999888765 899999999999999999999999987543
No 246
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.50 E-value=1.7e-13 Score=111.59 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=90.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCC-------ccc-----------------------ceeeeeE--EEE---
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNS-------KAT-----------------------IGVEFQT--QVV--- 56 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~-------~~t-----------------------~~~~~~~--~~i--- 56 (220)
.....|+|+|+||||||||+|+|.+...+... +++ ....... +.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 44688999999999999999999873211100 000 0000000 000
Q ss_pred E---------eCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEe
Q 027703 57 D---------IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGN 127 (220)
Q Consensus 57 ~---------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~ 127 (220)
+ +....+.+.++||+|.... ...+...+|.+++|+|.+.....+.+.. .+ -..|.+++.|
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlN 220 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVT 220 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEEC
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEe
Confidence 0 0012246688999996422 2345678999999999876533222211 11 1347788999
Q ss_pred cCCCCCCCCCCHHHHHHHHH----------HhCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhh
Q 027703 128 KCDLDSIRDVSTEEGKSLAE----------EEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYK 190 (220)
Q Consensus 128 k~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~ 190 (220)
|+|+...... ......+.. .+..+++.+|++++.|+.+++++|.+.+.. ++.+|.+..
T Consensus 221 K~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~----~~~~~~~~~ 288 (349)
T 2www_A 221 KSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL----MLASGELTA 288 (349)
T ss_dssp CCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH----HHHHSHHHH
T ss_pred eecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH----HhhCchHHH
Confidence 9997531100 001112211 124577889999999999999999988753 234555544
No 247
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=1.3e-13 Score=104.99 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=93.5
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee-----------E-EEEEeCC------------------eE
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ-----------T-QVVDIDG------------------KE 62 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~-----------~-~~i~~~~------------------~~ 62 (220)
...+++++|.+|||||||+++|.+..........+..++. . ..+.++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3578999999999999999999876322211111110000 0 0011111 12
Q ss_pred EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHH
Q 027703 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEG 142 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~ 142 (220)
..+.+||++|+.... ..+....+..++|+|+.+.... ...+... . ..|.++++||+|+...+....++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 456788998852111 0111346778999998765321 1111111 1 357789999999864333456666
Q ss_pred HHHHHH--hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 143 KSLAEE--EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 143 ~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
...+.. +.++++.+|++++.|+.+++++|.+.+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 666654 3578999999999999999999987664
No 248
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.49 E-value=2.4e-14 Score=116.84 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=90.4
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc------ccce-------------------------------------
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK------ATIG------------------------------------- 48 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~------~t~~------------------------------------- 48 (220)
...++|+|+|.+|||||||+++|.+..+.+... ++..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999988743221 2100
Q ss_pred ------eeeeEEEEEeC-CeEEEEEEEecCCcch-------------hhhhhHHhhcCCcEEEE-EEeCCCcccHHHHHH
Q 027703 49 ------VEFQTQVVDID-GKEVKAQIWDTAGQER-------------FRAVTSAYYRGAVGALV-VYDITRRSSFDSVKR 107 (220)
Q Consensus 49 ------~~~~~~~i~~~-~~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~~~~~~~~ 107 (220)
+......+.+. .....+.+|||||... +......++..++.+++ +.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 00000011111 1124688999999632 23345556666655554 555544222222212
Q ss_pred HHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh------C-CeEEEeccCCCCCHHHHHHHHHH
Q 027703 108 WLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE------G-LFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 108 ~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~------~-~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
+ +........|+++|+||.|+........ .++... + ..++.+||+++.|+.++++.+.+
T Consensus 189 i---~~~~~~~~~~~i~V~NK~Dl~~~~~~~~----~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 V---AKEVDPQGQRTIGVITKLDLMDEGTDAR----DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp H---HHHHCTTCTTEEEEEECGGGSCTTCCCH----HHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred H---HHHhCcCCCceEEEeccccccCcchhHH----HHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2 2223334689999999999865332111 222221 1 13455999999999999998876
No 249
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.48 E-value=1.8e-15 Score=129.60 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGA 205 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~ 205 (220)
...|++++.+|++.++| ||++|+.+...++++|.++..++.+++++||+++++..+||++++|++|.
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 33488999999999999 99999999999999999987778999999999999999999999999763
No 250
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.47 E-value=1.6e-15 Score=116.05 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=45.5
Q ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHH--hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 120 VGRMLVGNKCDLDSIRDVSTEEGKSLAEE--EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 120 ~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
.|.++++||+|+...+....+++...+.. +..+++++||+++.|+.++++++.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 46799999999865434566676666665 3678999999999999999999987764
No 251
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.45 E-value=2.4e-15 Score=135.18 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCC-CCCCCccc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANS-SKGSMMDF 215 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~-~~g~~~~~ 215 (220)
...+++++.++++.++| ++++|..++..+.+.|.+ .+.+++++||+++++..+||++++|++|+++ ..|+++++
T Consensus 557 vaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 34477999999999999 999999999999998877 5889999999999999999999999999986 57876554
No 252
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.45 E-value=8.6e-16 Score=133.11 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecC
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 204 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G 204 (220)
...|++++.++++.++| ||++|..+..+++++|.++..++.+++++|||++++..+||++++|++|
T Consensus 237 vaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 33488999999999999 9999999999999999988777899999999999999999999999865
No 253
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.43 E-value=3.6e-15 Score=134.08 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=58.3
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCC
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGS 211 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~ 211 (220)
.+++++.++++.++| |+++|..+...+.+.|.+. +.+++++|||++++..+||++++|++|+++..|+
T Consensus 912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 377899999999999 9999999888888766544 5799999999999999999999999999998886
No 254
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.43 E-value=1.1e-12 Score=117.87 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=85.3
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCc------------CCC----CCcccceeeeeEEEEEe--------------CC
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNE------------FDS----NSKATIGVEFQTQVVDI--------------DG 60 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~------------~~~----~~~~t~~~~~~~~~i~~--------------~~ 60 (220)
.....+|+|+|..|+|||||+++|+... +.+ +..+.+++......+.+ ++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641 111 01111122222222222 33
Q ss_pred eEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCC
Q 027703 61 KEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLD 132 (220)
Q Consensus 61 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~ 132 (220)
..+.+++|||||+.+|...+..+++.+|++++|+|+++..+++....|.... . ...|+++++||.|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 4688999999999999999999999999999999999998888865554332 2 357889999999975
No 255
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=2.8e-13 Score=110.63 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=68.5
Q ss_pred EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC--HH
Q 027703 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS--TE 140 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~--~~ 140 (220)
+.+.++||+|... ........+|.+++|+|.........+... ....|.++++||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5678999999543 233456889999999998765444332210 1135889999999975321110 01
Q ss_pred HHHHHHHH-------hCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 141 EGKSLAEE-------EGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 141 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
+....... ++.+++.+||+++.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111111 14689999999999999999999988754
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=3.4e-15 Score=122.73 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=106.9
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcC-CCCCcccceeeeeEEEEEeCCeE---------------EEEEEEecCCcch
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEF-DSNSKATIGVEFQTQVVDIDGKE---------------VKAQIWDTAGQER 75 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~---------------~~~~~~d~~g~~~ 75 (220)
....+++++|+||||||||+|+|++... .....|+.+.++..+.+.+.+.. ..+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999999876 45555655677777888776521 3578999999643
Q ss_pred -------hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 027703 76 -------FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEE 148 (220)
Q Consensus 76 -------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~ 148 (220)
....+...++.+|+++.|+|..+. .+++.+.++.|- ..+. .++.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d--------------------~~i~~v~~~~dP-------~~di-~ilde 149 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFDD--------------------AEIIHVEGDVDP-------IRDL-SIIVD 149 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCCT--------------------TCSSCCSSSSCH-------HHHH-HHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------------ceeeeeccccCc-------chhh-hhchh
Confidence 222445567889999999998650 111112333331 1111 11110
Q ss_pred hCCeEEEeccCCCCCHHHHHHHHHHH-HHHHhhhhhcCcchhhhccccceee-eeecC-CCCCCCCCc
Q 027703 149 EGLFFMETSALDSTNVEAAFEVVIRE-IYSNISRKVLNSDAYKAELSVNRVT-LVKDG-ANSSKGSMM 213 (220)
Q Consensus 149 ~~~~~~~~Sa~~~~~v~~l~~~l~~~-~~~~~~~~~~~h~~~~~~~~a~~~~-~~~~G-~~~~~g~~~ 213 (220)
+++..|...+...++.+... ...+.++ ++|.+..+...++++. +|++| +++..|+..
T Consensus 150 ------el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ------ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 13344444555555555444 2223333 3899999999999999 99999 888777643
No 257
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.41 E-value=1e-12 Score=107.29 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCC-------------------eEEEEEEEecCCcch
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDG-------------------KEVKAQIWDTAGQER 75 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~-------------------~~~~~~~~d~~g~~~ 75 (220)
++++++|++|||||||+++|++........+..+..+..+...+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998753222222222333334333322 234788999999865
Q ss_pred hh-------hhhHHhhcCCcEEEEEEeCCC
Q 027703 76 FR-------AVTSAYYRGAVGALVVYDITR 98 (220)
Q Consensus 76 ~~-------~~~~~~~~~~~~~i~v~d~~~ 98 (220)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 223446789999999999975
No 258
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.8e-12 Score=102.52 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=103.2
Q ss_pred CceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchh-------hhhhHH
Q 027703 10 GEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF-------RAVTSA 82 (220)
Q Consensus 10 ~~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~-------~~~~~~ 82 (220)
.++...+|+++|.|+||||||+|+|++........|..+.++..+.+.+.+ .++.+.|+||..+. ......
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 456778999999999999999999999876665556777888888888887 46788999996421 112334
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC--CCCCcEEEEEecCCCCC--------CCCCCHHHHHHHHHHhCCe
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC--DTAVGRMLVGNKCDLDS--------IRDVSTEEGKSLAEEEGLF 152 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~~k~Dl~~--------~~~~~~~~~~~~~~~~~~~ 152 (220)
..+.+|++++|+|.+++. ........++.... ....|..++.||.|... ......++...+.....+.
T Consensus 146 ~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt 223 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN 223 (376)
T ss_dssp HHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred HHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence 567899999999998753 22222233333321 12345677889999531 2345566676776666553
Q ss_pred EEEeccCCCCCHHHHHH
Q 027703 153 FMETSALDSTNVEAAFE 169 (220)
Q Consensus 153 ~~~~Sa~~~~~v~~l~~ 169 (220)
--++.-..+...+++.+
T Consensus 224 ~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 224 SAEIAFRCDATVDDLID 240 (376)
T ss_dssp SEEEEECSCCCHHHHHH
T ss_pred CCCeeecccCCHHHHHH
Confidence 33333334445555544
No 259
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=3e-13 Score=109.60 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=61.5
Q ss_pred EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHH
Q 027703 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEG 142 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~ 142 (220)
..+.++||+|..... ......+|.+++++|.......+.+..... ..+.+++.||.|+......+....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~--------~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh--------ccccEEEEEchhccCchhHHHHHH
Confidence 567889999975322 234578999999998754322211111111 134567779999643221111122
Q ss_pred HHHHHH----------hCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 143 KSLAEE----------EGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 143 ~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
..+... +..+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222221 1356788999999999999999988765
No 260
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.38 E-value=1.1e-14 Score=128.18 Aligned_cols=76 Identities=12% Similarity=0.219 Sum_probs=67.4
Q ss_pred HHHHHHHHhC---CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCC
Q 027703 141 EGKSLAEEEG---LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSK 209 (220)
Q Consensus 141 ~~~~~~~~~~---~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~ 209 (220)
.|++++.+++ +.++| |+++|+.+..++++.+.++..++.+++++|||++.+. +||++++| ++|+++.+
T Consensus 554 iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~ 632 (670)
T 3ux8_A 554 LAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAV 632 (670)
T ss_dssp HHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEe
Confidence 3778887764 88999 9999999999999999988767899999999999875 69999999 89999999
Q ss_pred CCCccccc
Q 027703 210 GSMMDFSC 217 (220)
Q Consensus 210 g~~~~~~~ 217 (220)
|+++++..
T Consensus 633 g~~~~~~~ 640 (670)
T 3ux8_A 633 GTPEEVAE 640 (670)
T ss_dssp ECHHHHHT
T ss_pred cCHHHHHh
Confidence 99988743
No 261
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.38 E-value=1.4e-12 Score=112.04 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=79.0
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCC---CCCcccceeeeeEEEEEeCCe--------------------------
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFD---SNSKATIGVEFQTQVVDIDGK-------------------------- 61 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~---~~~~~t~~~~~~~~~i~~~~~-------------------------- 61 (220)
....++|+|+|.+|+|||||+|+|++..+. ....++.+. . . .+...+.
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~-~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F-V-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E-E-EEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E-E-EEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 345689999999999999999999998874 222222211 0 0 0000000
Q ss_pred ----E----------EEEEEEecCCcch-----------hhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhC
Q 027703 62 ----E----------VKAQIWDTAGQER-----------FRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHC 116 (220)
Q Consensus 62 ----~----------~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~ 116 (220)
. ..+.+|||||... +......++..+|++++|+|+++.........++..+.
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~--- 215 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR--- 215 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---
Confidence 0 2478999999864 34455667889999999999987555555555555443
Q ss_pred CCCCcEEEEEecCCCCC
Q 027703 117 DTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 117 ~~~~~~~~v~~k~Dl~~ 133 (220)
....|+++|+||+|+..
T Consensus 216 ~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 216 GHEDKIRVVLNKADMVE 232 (550)
T ss_dssp TCGGGEEEEEECGGGSC
T ss_pred hcCCCEEEEEECCCccC
Confidence 23478999999999764
No 262
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.35 E-value=1.5e-11 Score=95.86 Aligned_cols=112 Identities=14% Similarity=-0.047 Sum_probs=67.6
Q ss_pred EEEEEEecCCcchhhhhh------HHhhcCCcEEEEEEeCCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCC
Q 027703 63 VKAQIWDTAGQERFRAVT------SAYYRGAVGALVVYDITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIR 135 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~ 135 (220)
+.+.+|||+|........ ...+.. +.++++.|................ .........|+++++||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 468899999986543221 123355 778888887554443332221111 111111247889999999976422
Q ss_pred CCCHHHHHHH----------------------------HHHh--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 136 DVSTEEGKSL----------------------------AEEE--GLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 136 ~~~~~~~~~~----------------------------~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
. .++...+ +... ..+++.+|++++.|+++++++|.+.+..
T Consensus 188 ~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 1 1111111 1222 3478999999999999999999988764
No 263
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.35 E-value=6.3e-13 Score=107.94 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=63.5
Q ss_pred EEEEEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCH--H
Q 027703 63 VKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVST--E 140 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~--~ 140 (220)
+.+.++||+|...... .....+|.+++|+|.+....++.+.. .. ...|.++++||.|+........ +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5688999999754332 35689999999999865433221111 00 1257789999999764211100 1
Q ss_pred HHHHHHHHh-------CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 141 EGKSLAEEE-------GLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 141 ~~~~~~~~~-------~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
+.+...... ..+++.+||+++.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 357889999999999999999998764
No 264
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.35 E-value=4.5e-11 Score=102.60 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=83.1
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc----------------------CCCCCcccceeeeeEEEEEeCCeEEEEEEEec
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE----------------------FDSNSKATIGVEFQTQVVDIDGKEVKAQIWDT 70 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~----------------------~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~ 70 (220)
..-+|+|+|..++|||||..+|+... -+.+..+.+++......+.+.+ ..+++.||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 45679999999999999999995210 1112223333333344455554 67889999
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 71 AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 71 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
||+.+|.......++.+|+.++|+|+.....-+....| ..... ..+|.+++.||.|...+
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence 99999999999999999999999999998777776555 33333 26899999999997643
No 265
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.28 E-value=4.7e-12 Score=103.90 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=54.2
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCe---------------EEEEEEEecCCcchhh
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGK---------------EVKAQIWDTAGQERFR 77 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~---------------~~~~~~~d~~g~~~~~ 77 (220)
..++++++|+||||||||+|+|++..+.....++.+..+..+.+.+.+. ...+.+||++|.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4589999999999999999999998775555555666666677766542 2358999999987543
Q ss_pred h-------hhHHhhcCCcEEEEEEeCCCccc
Q 027703 78 A-------VTSAYYRGAVGALVVYDITRRSS 101 (220)
Q Consensus 78 ~-------~~~~~~~~~~~~i~v~d~~~~~~ 101 (220)
. .+..+++.+|++++|+|+++..+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 45667899999999999876444
No 266
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.25 E-value=4.1e-14 Score=126.97 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHHHHh---CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703 142 GKSLAEEE---GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG 210 (220)
Q Consensus 142 ~~~~~~~~---~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g 210 (220)
|+++++++ .+.++| ||++|...+..+++.|.++..++.|+++++|+++.+.. ||+|++| ++|+|+++|
T Consensus 817 AraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATG 895 (916)
T ss_dssp HHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEE
T ss_pred HHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEc
Confidence 55666554 588999 99999999999999998887779999999999999875 9999999 999999999
Q ss_pred CCccccc
Q 027703 211 SMMDFSC 217 (220)
Q Consensus 211 ~~~~~~~ 217 (220)
+++++..
T Consensus 896 tpeel~~ 902 (916)
T 3pih_A 896 TPEEIAK 902 (916)
T ss_dssp SHHHHHS
T ss_pred CHHHHHh
Confidence 9998754
No 267
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.24 E-value=4.4e-11 Score=105.36 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=93.3
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee---------------------------------------
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ--------------------------------------- 52 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~--------------------------------------- 52 (220)
....+|+|+|..++|||||+|+|.+..+-+.+....+..+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45679999999999999999999998773322211111000
Q ss_pred ----------EEEEEeC-CeEEEEEEEecCCcch-------------hhhhhHHhh-cCCcEEEEEEeCCCcccHHHHHH
Q 027703 53 ----------TQVVDID-GKEVKAQIWDTAGQER-------------FRAVTSAYY-RGAVGALVVYDITRRSSFDSVKR 107 (220)
Q Consensus 53 ----------~~~i~~~-~~~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~ 107 (220)
...+.+. .....+.++||||... .......+. ..+|.+++|.|++......+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0011110 0012467899999643 111223333 57899999999987543333222
Q ss_pred HHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHh----CC---eEEEeccCCCCCHHHHHHHHHHH
Q 027703 108 WLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEE----GL---FFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 108 ~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~----~~---~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
++..+ .....|+++|.||.|+........ .+.... .. .++.+||+++.|++++++.+.+.
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~----~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEGTDAR----DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTTCCSH----HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcchhhH----HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33333 234579999999999865333222 122211 11 23349999999999999988763
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.19 E-value=2.4e-12 Score=102.43 Aligned_cols=136 Identities=18% Similarity=0.097 Sum_probs=82.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhhhhHHhhcCCcEEEEEEe
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYD 95 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 95 (220)
.++|+||+|||||||++.|.+.. .|.+. ...++... ++..-....+ +.+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--------------~G~I~----------~~v~q~~~---lf~~ti~~~n-i~~~~~ 179 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--------------GGSVL----------SFANHKSH---FWLASLADTR-AALVDD 179 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--------------TCEEE----------CGGGTTSG---GGGGGGTTCS-CEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--------------CceEE----------EEecCccc---cccccHHHHh-hccCcc
Confidence 68999999999999999999973 12221 11221111 1111122111 122223
Q ss_pred CCCcccHHHHHHHHHH-HHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHH
Q 027703 96 ITRRSSFDSVKRWLEE-LTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIRE 174 (220)
Q Consensus 96 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 174 (220)
.++ .+..++.. +..... ..-++.|.|+. ++ +++.+|++.+ ||++|..+...+..
T Consensus 180 ~~~-----~~~~~i~~~L~~gld--g~~LSgGqkQR---AR--------All~~p~iLl--Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTYLRNALD--GYPVSIDRKHK---AA--------VQIKAPPLLV--TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHTTTGGGG--TCCEECCCSSC---CC--------CEECCCCEEE--EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHHhHccCC--ccCcCHHHHHH---HH--------HHhCCCCEEE--ECCCCHHHHHHHHH-----
Confidence 221 22233333 211111 23477787777 34 7888888877 99999999877751
Q ss_pred HHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 175 IYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 175 ~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
++|++..+ ..||++ +|++|++++.|+++++
T Consensus 235 ---------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ---------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ---------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred ---------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 39998875 589999 9999999999998775
No 269
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.9e-13 Score=113.67 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=55.1
Q ss_pred HHH--HHHHhCC----eEEE---eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchh------hhccccce-----eee
Q 027703 142 GKS--LAEEEGL----FFME---TSALDSTNVEAAFEVVIREIYS-NISRKVLNSDAY------KAELSVNR-----VTL 200 (220)
Q Consensus 142 ~~~--~~~~~~~----~~~~---~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~------~~~~~a~~-----~~~ 200 (220)
+++ ++.++++ .++| ++++|.. .. .+.+++.+ +.++++++|+.. ++..+||+ +++
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~----~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LA----ELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CH----HHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HH----HHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 667 9999999 9998 6889988 33 33344443 788999999988 88899999 999
Q ss_pred ee-cCCCCCCCCCccc
Q 027703 201 VK-DGANSSKGSMMDF 215 (220)
Q Consensus 201 ~~-~G~~~~~g~~~~~ 215 (220)
|+ +|+++ .|+++++
T Consensus 322 l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 322 IPKLDGVS-AVDDVYK 336 (460)
T ss_dssp ECCCTTCC-CCCHHHH
T ss_pred EeCCCcEE-ECCHHHH
Confidence 99 99999 8887665
No 270
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.15 E-value=9.6e-11 Score=95.86 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCHHH------HHHHH------HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeee
Q 027703 135 RDVSTEE------GKSLA------EEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTL 200 (220)
Q Consensus 135 ~~~~~~~------~~~~~------~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~ 200 (220)
..++..+ +++++ .+|++.++| ++++|+.....+++.+.++...+.+++++||+++. ...||++++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~ 356 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLR 356 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEE
Confidence 3455554 55555 478899999 99999999999999988876668999999999998 567999999
Q ss_pred eecCCCCC
Q 027703 201 VKDGANSS 208 (220)
Q Consensus 201 ~~~G~~~~ 208 (220)
|++|+++.
T Consensus 357 l~~G~i~~ 364 (365)
T 3qf7_A 357 ITGGVVVN 364 (365)
T ss_dssp EETTEEC-
T ss_pred EECCEEEe
Confidence 99999875
No 271
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.14 E-value=2.5e-09 Score=94.61 Aligned_cols=121 Identities=19% Similarity=0.159 Sum_probs=83.7
Q ss_pred CCceeeEEEEEECCCCCcHHHHHHHHhhCc--------------CC----CCCcccceeeeeEEEEEeCC-----eEEEE
Q 027703 9 GGEEYLFKIVLIGDSAVGKSNLLSRFARNE--------------FD----SNSKATIGVEFQTQVVDIDG-----KEVKA 65 (220)
Q Consensus 9 ~~~~~~~ki~ilG~~g~GKSTll~~l~~~~--------------~~----~~~~~t~~~~~~~~~i~~~~-----~~~~~ 65 (220)
.+-+.+-+|+|+|..++|||||..+|+... +. .+..+.+++......+.+.+ +.+.+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 334567789999999999999999995221 11 11122223333333444422 35789
Q ss_pred EEEecCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 66 QIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 66 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
++.||||+.+|.......++-+|+.++|+|+.....-+....|...... .+|.+++.||.|...
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999999999987777665544333322 578899999999753
No 272
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.12 E-value=1e-13 Score=123.39 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHH---hCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703 142 GKSLAEE---EGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG 210 (220)
Q Consensus 142 ~~~~~~~---~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g 210 (220)
|++++.+ +++.++| |+++|...+.++++.|.++..++.+++++||+++++ ..||++++| ++|+++..|
T Consensus 742 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 742 ATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQG 820 (842)
T ss_dssp HHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEc
Confidence 5566664 5788999 999999999999999998887799999999999999 689999999 799999999
Q ss_pred CCccccc
Q 027703 211 SMMDFSC 217 (220)
Q Consensus 211 ~~~~~~~ 217 (220)
+++++..
T Consensus 821 ~~~el~~ 827 (842)
T 2vf7_A 821 TPAEVAQ 827 (842)
T ss_dssp CHHHHTT
T ss_pred CHHHHHh
Confidence 9887653
No 273
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.07 E-value=1.1e-10 Score=96.53 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=57.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeee--EEEEEeCCeEEEEEEEecCCcchhhhhhHHh-----hcCC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQ--TQVVDIDGKEVKAQIWDTAGQERFRAVTSAY-----YRGA 87 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~~~~~d~~g~~~~~~~~~~~-----~~~~ 87 (220)
..++++|+||||||||+|.|.|...+..+..+.+.... .+.+.-....-.+.+||++|..........+ +...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 47999999999999999999998766655433321110 0111111111146778999854211111111 1223
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCC
Q 027703 88 VGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDL 131 (220)
Q Consensus 88 ~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl 131 (220)
+..+. ++... ...+++. ....+.. ...|++++.||.|+
T Consensus 150 ~~~~~-lS~G~-~~kqrv~-la~aL~~---~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 150 DFFII-ISATR-FKKNDID-IAKAISM---MKKEFYFVRTKVDS 187 (413)
T ss_dssp SEEEE-EESSC-CCHHHHH-HHHHHHH---TTCEEEEEECCHHH
T ss_pred CCeEE-eCCCC-ccHHHHH-HHHHHHh---cCCCeEEEEecCcc
Confidence 43333 55532 1222221 1122222 24688899999885
No 274
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.03 E-value=1.8e-10 Score=100.65 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=78.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC--cCCCC------------C----cccceeeeeEEEEEeCCeEEEEEEEecCCcchh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN--EFDSN------------S----KATIGVEFQTQVVDIDGKEVKAQIWDTAGQERF 76 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~--~~~~~------------~----~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~ 76 (220)
-+|+|+|..++|||||..+|+.. ..... . .+.+++......+.+ +...+++.||||+.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW--ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC--SSCBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE--CCEEEEEEECCCcHHH
Confidence 36899999999999999999532 11110 0 012222222222333 3467889999999999
Q ss_pred hhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 77 RAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
.......++.+|+.++|+|+.....-+....| ...... .+|.+++.||.|....
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEeccccccC
Confidence 99999999999999999999887665554333 333333 4677888999997643
No 275
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.03 E-value=2.2e-11 Score=101.30 Aligned_cols=66 Identities=17% Similarity=0.064 Sum_probs=58.5
Q ss_pred HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee----ecCCCCCC
Q 027703 142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV----KDGANSSK 209 (220)
Q Consensus 142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~----~~G~~~~~ 209 (220)
+++++.++ ++.++| ++++|+.....+.+.|.++. ++.+++++||++..+ ..||++++| ++|+++..
T Consensus 307 A~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 307 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp HHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEEEEEEEEETTEEEEE
T ss_pred HHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEEEEEEeccCCceEEE
Confidence 77888888 999999 99999999999999998876 689999999999876 579999999 99987654
No 276
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.02 E-value=6.8e-10 Score=88.55 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=76.5
Q ss_pred cchhhhhhHHhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCC-HHHHHHHHHHhC
Q 027703 73 QERFRAVTSAYYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVS-TEEGKSLAEEEG 150 (220)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~-~~~~~~~~~~~~ 150 (220)
++++......++.++|.+++|+|++++. ++..+.+|+..+.. ...|.++++||+|+...+.+. .++..++....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 3455566667899999999999999885 89988899887654 357889999999986432212 344556666778
Q ss_pred CeEEEeccCCCCCHHHHHHHHHH
Q 027703 151 LFFMETSALDSTNVEAAFEVVIR 173 (220)
Q Consensus 151 ~~~~~~Sa~~~~~v~~l~~~l~~ 173 (220)
.+++.+||+++.|++++++.+..
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHhhccC
Confidence 89999999999999999987653
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.01 E-value=9.8e-12 Score=91.08 Aligned_cols=55 Identities=5% Similarity=-0.089 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCeEEE--eccCCCC----------------CHHHHHHHHHHHHHHHhhhhhcCcchhhhcc
Q 027703 139 TEEGKSLAEEEGLFFME--TSALDST----------------NVEAAFEVVIREIYSNISRKVLNSDAYKAEL 193 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~Sa~~~~----------------~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~ 193 (220)
...|+++..++.+.++| ++++|.. ...++.+.+.++..++.+++++||+++++..
T Consensus 92 v~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 92 IEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 44466777777888888 8999988 5578888877777779999999999999864
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.98 E-value=8.8e-13 Score=99.65 Aligned_cols=42 Identities=10% Similarity=-0.050 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeee
Q 027703 161 STNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVK 202 (220)
Q Consensus 161 ~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~ 202 (220)
+.....+.+.+.++..+ +.+++++|||++++..+||++++|.
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 160 DVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 34666777777666543 7899999999999999999999985
No 279
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.96 E-value=5.2e-11 Score=96.64 Aligned_cols=59 Identities=7% Similarity=0.005 Sum_probs=50.4
Q ss_pred eccCCCCCHHHHHHHHHHHHH--HHh-----hhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 156 TSALDSTNVEAAFEVVIREIY--SNI-----SRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~~~--~~~-----~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++++|+....++.+.+.+... .+. ++++.+||++ ..+||++.+|.+|+++.+++.+++.
T Consensus 189 t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 189 RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 899999999999887776653 366 8999999999 6789999999999999999877653
No 280
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=80.71 Aligned_cols=103 Identities=7% Similarity=-0.026 Sum_probs=68.8
Q ss_pred CCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHH----hhC-CCCCcEEEEEecC-CCCCCCCCCHHHHHH
Q 027703 71 AGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELT----THC-DTAVGRMLVGNKC-DLDSIRDVSTEEGKS 144 (220)
Q Consensus 71 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~v~~k~-Dl~~~~~~~~~~~~~ 144 (220)
+|+...+..|..|+.+.|++|||+|++|...++ ....+.++. ... ....|+++.+||+ |++. ..+..+...
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 367788899999999999999999999876544 333333322 111 2468999999995 7765 445555333
Q ss_pred HHH----HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 145 LAE----EEGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 145 ~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
.+. +..+.+..|||++|.|+.+.++||.+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 322 23567888999999999999999986653
No 281
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.92 E-value=3.4e-11 Score=100.60 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=51.0
Q ss_pred eccCCCCCHHHHHHHHHHHHH---H-Hh-----hhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 156 TSALDSTNVEAAFEVVIREIY---S-NI-----SRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~~~---~-~~-----~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++++|+....++.+.+.++.. + +. ++++++||++ ..+||++++|.+|+++.+|+++++.
T Consensus 276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999998877655 3 53 8999999999 6789999999999999998876654
No 282
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.91 E-value=1.6e-09 Score=87.17 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=50.5
Q ss_pred HHHHH----HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhcccccee--eeeecCC
Q 027703 142 GKSLA----EEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRV--TLVKDGA 205 (220)
Q Consensus 142 ~~~~~----~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~--~~~~~G~ 205 (220)
+++++ ..+++.++| ++++|+.....+++.+.++ .++.+++++||+.. +...||++ ++|.+|.
T Consensus 231 a~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~ 300 (322)
T 1e69_A 231 ALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKI-VMEAADLLHGVTMVNGV 300 (322)
T ss_dssp HHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTT-GGGGCSEEEEEEESSSC
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHH-HHhhCceEEEEEEeCCE
Confidence 66665 356788999 9999999999999988776 45788999999964 56789987 8888886
No 283
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.89 E-value=1.1e-10 Score=90.15 Aligned_cols=56 Identities=5% Similarity=0.024 Sum_probs=37.6
Q ss_pred HhCCeEEE--eccCC----CCCHHH-HHHHHHHHHHHHhhhhhcCcchhhh---------cccc-ceeeeeec
Q 027703 148 EEGLFFME--TSALD----STNVEA-AFEVVIREIYSNISRKVLNSDAYKA---------ELSV-NRVTLVKD 203 (220)
Q Consensus 148 ~~~~~~~~--~Sa~~----~~~v~~-l~~~l~~~~~~~~~~~~~~h~~~~~---------~~~a-~~~~~~~~ 203 (220)
++++.++| ++.++ +....+ +.+.+..+...+.++++++|++.++ ..+| |++++|++
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 46677787 55553 344455 5555555545689999999999998 6788 99999964
No 284
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.84 E-value=1.8e-08 Score=79.05 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=24.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNS 43 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~ 43 (220)
.++++++|+||||||||+|.|++...+..+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 589999999999999999999998766544
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.80 E-value=5.3e-10 Score=85.26 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCcchh----hhccccceeeeeecCC
Q 027703 164 VEAAFEVVIREIYS-NISRKVLNSDAY----KAELSVNRVTLVKDGA 205 (220)
Q Consensus 164 v~~l~~~l~~~~~~-~~~~~~~~h~~~----~~~~~a~~~~~~~~G~ 205 (220)
+.++++.+.++..+ +.++++++|... .+..+||++++|++|+
T Consensus 155 ~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 155 LAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 34677878877765 899999999555 4899999999999874
No 286
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=1e-07 Score=78.93 Aligned_cols=61 Identities=26% Similarity=0.512 Sum_probs=35.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcc--cceeeeeEEEEEeC--CeEEEEEEEecCCcc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKA--TIGVEFQTQVVDID--GKEVKAQIWDTAGQE 74 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~--t~~~~~~~~~i~~~--~~~~~~~~~d~~g~~ 74 (220)
.++++|+|+||||||||+|.|+|..+...... +.+.......+.+. +-...+.++|+++..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 36799999999999999999999864322111 01111112222222 222367788888753
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.77 E-value=1.1e-10 Score=88.22 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=43.0
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703 126 GNKCDLDSIRDVSTEEGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD 203 (220)
Q Consensus 126 ~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~ 203 (220)
|.|+.+..++ +++.++++.++| +|+ +...+.+.+.++ .++.+++ +|||++.+.. ...++|
T Consensus 108 Gq~qrv~lAr--------aL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~----~~~~~~ 169 (208)
T 3b85_A 108 VEVAPLAYMR--------GRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL----PGGQKS 169 (208)
T ss_dssp EEEEEGGGGT--------TCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----------------
T ss_pred chHHHHHHHH--------HHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC----cCCCCC
Confidence 8888887777 889999999999 877 888898888877 5578888 9999987653 445677
Q ss_pred CCC
Q 027703 204 GAN 206 (220)
Q Consensus 204 G~~ 206 (220)
|..
T Consensus 170 G~~ 172 (208)
T 3b85_A 170 GLR 172 (208)
T ss_dssp CCH
T ss_pred cHH
Confidence 753
No 288
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.77 E-value=1.8e-08 Score=78.71 Aligned_cols=104 Identities=8% Similarity=-0.024 Sum_probs=72.8
Q ss_pred cCCcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHH---HH-hhC-CCCCcEEEEEec-CCCCCCCCCCHHHHH
Q 027703 70 TAGQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEE---LT-THC-DTAVGRMLVGNK-CDLDSIRDVSTEEGK 143 (220)
Q Consensus 70 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---l~-~~~-~~~~~~~~v~~k-~Dl~~~~~~~~~~~~ 143 (220)
.+|+...+..|..|+.+.|++|||+|++|.+.++ ....+.+ +. ... ....|+++.+|| +|++. ..+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 3567788899999999999999999999987654 3232222 22 211 246899999996 68865 34555533
Q ss_pred HHHH----HhCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 027703 144 SLAE----EEGLFFMETSALDSTNVEAAFEVVIREIY 176 (220)
Q Consensus 144 ~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 176 (220)
..+. ...+.+..+||++|+|+.+.++||.+.+.
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3222 23567888999999999999999987664
No 289
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.75 E-value=2.1e-10 Score=92.55 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHH-hhhhhcCcchhhhccccceeeeeecCCCC
Q 027703 141 EGKSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSN-ISRKVLNSDAYKAELSVNRVTLVKDGANS 207 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~-~~~~~~~h~~~~~~~~a~~~~~~~~G~~~ 207 (220)
.++++..+|++.++| ++ .++.+.+. .+..+ .++++++|+.+ +...+||+++|.+|+..
T Consensus 233 la~aL~~~p~ilildE~~~-------~e~~~~l~-~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 233 LKSCLRMRPDRIILGELRS-------SEAYDFYN-VLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp HHHHTTSCCSEEEECCCCS-------THHHHHHH-HHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGG
T ss_pred HHHHhhhCCCEEEEcCCCh-------HHHHHHHH-HHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcc
Confidence 344555566666666 33 23455443 33444 46899999998 77889999999999754
No 290
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.73 E-value=3.4e-09 Score=95.70 Aligned_cols=68 Identities=6% Similarity=-0.055 Sum_probs=53.9
Q ss_pred HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCccc
Q 027703 147 EEEGLFFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDF 215 (220)
Q Consensus 147 ~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~ 215 (220)
.++.+.++| ++++|+.....+...+.+.+.+ +.+++++||+.+.+ .+||++..+++|++...++.+++
T Consensus 740 ~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 740 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 455667777 8999988777776666666653 78999999996655 68999999999999988877664
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.68 E-value=1.3e-09 Score=80.75 Aligned_cols=69 Identities=7% Similarity=-0.128 Sum_probs=43.5
Q ss_pred HHHHHhCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhhcCcc-hhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 144 SLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD-AYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 144 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~-~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
.+...+.....+ ..+++..+.. ++.+......+.+++..+|. ++.+...|++|+ ++|+++.+|+++-+-
T Consensus 114 ~l~~R~~~r~~d-~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 114 ELLRRDALRKKD-EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHHTTTSCC-----CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHHHHhcccc-ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 455555544444 3566666777 66666554345678888998 999999999998 999999999986543
No 292
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.67 E-value=7.5e-10 Score=94.79 Aligned_cols=64 Identities=11% Similarity=-0.010 Sum_probs=52.1
Q ss_pred HHHHHHHhCCeEEE-eccCCCC-----CHHHHHHHHHHHHHHHhhhhhcCcch----------hhhccccceeeeeecCC
Q 027703 142 GKSLAEEEGLFFME-TSALDST-----NVEAAFEVVIREIYSNISRKVLNSDA----------YKAELSVNRVTLVKDGA 205 (220)
Q Consensus 142 ~~~~~~~~~~~~~~-~Sa~~~~-----~v~~l~~~l~~~~~~~~~~~~~~h~~----------~~~~~~a~~~~~~~~G~ 205 (220)
++.+..++++.++| ++++|.. ....+.+.+..+...+.++++++|+. ..+..+||++++|++|+
T Consensus 365 a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 365 SEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 44555667888999 8889988 77777776665555589999999999 78888999999999986
No 293
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.66 E-value=4.9e-09 Score=89.77 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=43.7
Q ss_pred hCCeEEE--ec-----cCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhh---------ccccceeeeeecCCC
Q 027703 149 EGLFFME--TS-----ALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKA---------ELSVNRVTLVKDGAN 206 (220)
Q Consensus 149 ~~~~~~~--~S-----a~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~---------~~~a~~~~~~~~G~~ 206 (220)
++..++| ++ ++|+....++++.+.++...+.++++++|+++++ ..+||++++|++|++
T Consensus 139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 4455666 33 2355677888888877767789999999999985 445999999999654
No 294
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.65 E-value=5.4e-08 Score=74.00 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=44.8
Q ss_pred HhC--CeEEE--eccC--CCCCHHHHHHHHHHHHHH-HhhhhhcCcch--------hhhccccceeeeeecC
Q 027703 148 EEG--LFFME--TSAL--DSTNVEAAFEVVIREIYS-NISRKVLNSDA--------YKAELSVNRVTLVKDG 204 (220)
Q Consensus 148 ~~~--~~~~~--~Sa~--~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~--------~~~~~~a~~~~~~~~G 204 (220)
+++ +.++| ++.+ ++....++++.+.++..+ +.++++++|+. ..+..+||++++|++.
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 466 77888 5555 777789999999888766 88999999999 5688899999999875
No 295
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.60 E-value=2.9e-07 Score=78.04 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=82.4
Q ss_pred eeEEEEEECCCCCcHHHHHHHHh------hCcCCC----CCccc-----------ceeeeeEEEEE-------------e
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFA------RNEFDS----NSKAT-----------IGVEFQTQVVD-------------I 58 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~------~~~~~~----~~~~t-----------~~~~~~~~~i~-------------~ 58 (220)
....|+++|++||||||+++.|. +....- .+.+. .+++....... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998 432100 00000 00111110000 0
Q ss_pred CCeEEEEEEEecCCcchhhh-hh---HHh--hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcE-EEEEecCCC
Q 027703 59 DGKEVKAQIWDTAGQERFRA-VT---SAY--YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGR-MLVGNKCDL 131 (220)
Q Consensus 59 ~~~~~~~~~~d~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~v~~k~Dl 131 (220)
....+.+.++||+|...... .. ... ...++.+++|+|+........ ....+.. ..|+ .++.||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence 00234678899999753211 11 111 237899999999977543211 1222222 1454 788999996
Q ss_pred CCCCCCCHHHHHHHHHHhCCeE--E----------------EeccCCCCC-HHHHHHHHHHH
Q 027703 132 DSIRDVSTEEGKSLAEEEGLFF--M----------------ETSALDSTN-VEAAFEVVIRE 174 (220)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~--~----------------~~Sa~~~~~-v~~l~~~l~~~ 174 (220)
.. + ...+.+.....+.++ + .+|++.+.+ +.++++++.+.
T Consensus 253 ~~-~---~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HA-K---GGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CC-C---CTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cc-c---hHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 52 2 122223333444443 1 168888988 88888888755
No 296
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.55 E-value=1.2e-08 Score=88.76 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=43.9
Q ss_pred eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccc------------cceeeeeecCCCCCCCCCcc
Q 027703 156 TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELS------------VNRVTLVKDGANSSKGSMMD 214 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~------------a~~~~~~~~G~~~~~g~~~~ 214 (220)
++++|+....++.+.+.+++.+ ...+.+++|+++.+... ...|.|+..+.++..|+.++
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 7889999888999988887654 46678889988754322 24578899999888887654
No 297
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.51 E-value=7.5e-08 Score=76.33 Aligned_cols=62 Identities=5% Similarity=0.005 Sum_probs=43.1
Q ss_pred HHHHhCCeEEE--eccC------CC-CCHHHHHHHHHHHHHH-HhhhhhcCcch--h--------------------hhc
Q 027703 145 LAEEEGLFFME--TSAL------DS-TNVEAAFEVVIREIYS-NISRKVLNSDA--Y--------------------KAE 192 (220)
Q Consensus 145 ~~~~~~~~~~~--~Sa~------~~-~~v~~l~~~l~~~~~~-~~~~~~~~h~~--~--------------------~~~ 192 (220)
+..++++.++| ++.. +. ..+.++.+.|.++..+ +.++++++|+. + .+.
T Consensus 144 ~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~ 223 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALR 223 (296)
T ss_dssp HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHH
T ss_pred HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhH
Confidence 34456778888 4422 22 4456788888877765 88999999995 5 678
Q ss_pred cccceeeeeecCCC
Q 027703 193 LSVNRVTLVKDGAN 206 (220)
Q Consensus 193 ~~a~~~~~~~~G~~ 206 (220)
.+||++++|++|+.
T Consensus 224 ~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 224 QLSDTIIALERNQQ 237 (296)
T ss_dssp HHCSEEEEEEEC--
T ss_pred hhCcEEEEEecCcc
Confidence 89999999999975
No 298
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.50 E-value=3.7e-08 Score=78.40 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=39.4
Q ss_pred HHHhC--CeEEE-eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCc---------chhhhccccceeeeeecCCCCC
Q 027703 146 AEEEG--LFFME-TSALDSTNVEAAFEVVIREIYS-NISRKVLNS---------DAYKAELSVNRVTLVKDGANSS 208 (220)
Q Consensus 146 ~~~~~--~~~~~-~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h---------~~~~~~~~a~~~~~~~~G~~~~ 208 (220)
+.+|. +.++| ++++|..+ .+.+.... +.+.+++|| .++.+......|.++.+|+.+.
T Consensus 217 ~~~P~e~lLvLDptsglD~~~------~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~ 286 (302)
T 3b9q_A 217 SGAPNEILLVLDGNTGLNMLP------QAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 286 (302)
T ss_dssp TTCCSEEEEEEEGGGGGGGHH------HHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred ccCCCeeEEEEeCCCCcCHHH------HHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChh
Confidence 34577 77888 66666542 23333333 788999999 5666667788999999997653
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.49 E-value=2.3e-09 Score=83.63 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCeEEE-eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703 139 TEEGKSLAEEEGLFFME-TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD 203 (220)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~ 203 (220)
...++++..++++.++| .. |...+.. +.+....+.++++++|+.+ +...+||+++|..
T Consensus 89 ~~la~aL~~~p~illlDEp~--D~~~~~~----~l~~~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMR--DLETVET----ALRAAETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCC--SHHHHHH----HHHHHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred HHHHHHHhhCCCEEEeCCCC--CHHHHHH----HHHHHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 44466666667776666 22 3333222 2333445778888999977 5678888877753
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.48 E-value=1.1e-08 Score=83.13 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.++|+||+|||||||++.|.+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 69999999999999999998873
No 301
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.45 E-value=2.2e-08 Score=91.52 Aligned_cols=70 Identities=11% Similarity=-0.037 Sum_probs=49.4
Q ss_pred HHHHHHHhCCeEEE--eccCCCCC-HHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCC--CCCCC
Q 027703 142 GKSLAEEEGLFFME--TSALDSTN-VEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANS--SKGSM 212 (220)
Q Consensus 142 ~~~~~~~~~~~~~~--~Sa~~~~~-v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~--~~g~~ 212 (220)
+.+++.++.+.++| ++++|+.. ...++..+..+... +.+++++||+++.+..+++++.++ +|++. ..|.+
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 44566677888888 88888665 34455555555455 788999999999999999999886 58877 44543
No 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.40 E-value=1.6e-07 Score=76.35 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=41.6
Q ss_pred HHHHHHHhC--CeEEE-eccCCCCCHHHHHHHHHHHHHH-HhhhhhcCc---------chhhhccccceeeeeecCCCCC
Q 027703 142 GKSLAEEEG--LFFME-TSALDSTNVEAAFEVVIREIYS-NISRKVLNS---------DAYKAELSVNRVTLVKDGANSS 208 (220)
Q Consensus 142 ~~~~~~~~~--~~~~~-~Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h---------~~~~~~~~a~~~~~~~~G~~~~ 208 (220)
+++++.+|. +.++| ++++|..+. +.+.... +.+.+++|| .++.+......|.++..|+.+.
T Consensus 270 aral~~~P~e~lLvLDpttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~ 343 (359)
T 2og2_A 270 GKIVSGAPNEILLVLDGNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 343 (359)
T ss_dssp HHHSTTCCSEEEEEEEGGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred HHHHhcCCCceEEEEcCCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChH
Confidence 334445577 77888 666664422 2333333 788999999 4566667788999999997654
Q ss_pred C
Q 027703 209 K 209 (220)
Q Consensus 209 ~ 209 (220)
+
T Consensus 344 D 344 (359)
T 2og2_A 344 D 344 (359)
T ss_dssp G
T ss_pred h
Confidence 3
No 303
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.39 E-value=5e-08 Score=73.66 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=38.2
Q ss_pred hCCeEEE--eccCCCC--------CHHHHHHHHHHHHHH-HhhhhhcCcchh-------------hhccccceeeeeecC
Q 027703 149 EGLFFME--TSALDST--------NVEAAFEVVIREIYS-NISRKVLNSDAY-------------KAELSVNRVTLVKDG 204 (220)
Q Consensus 149 ~~~~~~~--~Sa~~~~--------~v~~l~~~l~~~~~~-~~~~~~~~h~~~-------------~~~~~a~~~~~~~~G 204 (220)
+++.++| ++.+++. .+.+++..+.++..+ +.++++++|... .+..+||++++|+..
T Consensus 106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 5556666 4444432 224455556776655 788999999876 456789999999876
No 304
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.39 E-value=3.4e-08 Score=80.83 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=63.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC------cCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh-------hhH
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN------EFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA-------VTS 81 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~------~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~-------~~~ 81 (220)
.+++++|.+|+|||||+|+|.+. .......+..+. ....+.+... +.+.||||...... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 46999999999999999999986 221121222222 2223333332 57899999643221 111
Q ss_pred Hhh---cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 82 AYY---RGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 82 ~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
..+ ...+.++++.+....--+..+.. +........|++++.||.|..+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc
Confidence 222 66788888888743211111110 1111234578999999999754
No 305
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.36 E-value=7.4e-07 Score=68.16 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCcchhhhcc-------------------ccceeeeeecCC
Q 027703 164 VEAAFEVVIREIYS-NISRKVLNSDAYKAEL-------------------SVNRVTLVKDGA 205 (220)
Q Consensus 164 v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~-------------------~a~~~~~~~~G~ 205 (220)
+.+++..+.++..+ +.++++++|....... +||.+++|+.|+
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 45677777777665 7899999997665433 899999999874
No 306
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.35 E-value=1.2e-07 Score=77.51 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=61.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCC-------CCcccceeeeeEEEEEeCCeEEEEEEEecCCcchhhh--------h
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDS-------NSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQERFRA--------V 79 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~-------~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~~~~--------~ 79 (220)
.+++++|.+|+|||||+|+|++..... ...+. +......+.+.+. +.++||||...... .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG--TTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC--eecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 479999999999999999999864221 11111 1112223333332 57899999743221 1
Q ss_pred hHHh--hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCC
Q 027703 80 TSAY--YRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDS 133 (220)
Q Consensus 80 ~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~ 133 (220)
...+ ....+..+++++.....-+..+.. +........|++++.||.|..+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccc
Confidence 1111 256677788887632211111100 1111233578999999999764
No 307
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.33 E-value=2.9e-06 Score=69.37 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=69.7
Q ss_pred cchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHH----HHHHH
Q 027703 73 QERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGK----SLAEE 148 (220)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~----~~~~~ 148 (220)
.+.|......+++.++.+++|+|++++. ..|...+..... +.|+++++||.|+... ....++.. .....
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~ 128 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ 128 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence 4567778888889999999999998742 334444544433 5789999999998642 23333332 33455
Q ss_pred hCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 027703 149 EGL---FFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 149 ~~~---~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
.+. .++.+||+++.|++++++.+.+..
T Consensus 129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 129 LGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 566 788999999999999999987654
No 308
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.31 E-value=5.3e-08 Score=87.76 Aligned_cols=74 Identities=9% Similarity=0.144 Sum_probs=66.4
Q ss_pred HHHHHHHhC--CeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703 142 GKSLAEEEG--LFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS 211 (220)
Q Consensus 142 ~~~~~~~~~--~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~ 211 (220)
|++++.+++ +.++| ++++|+.....+++.|.++..++.++++++||++.+.. ||++++| ++|+++.+|+
T Consensus 476 AraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 476 ATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp HHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEEC
T ss_pred HHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeec
Confidence 778887776 88999 99999999999999998887779999999999998865 9999999 9999999999
Q ss_pred Ccccc
Q 027703 212 MMDFS 216 (220)
Q Consensus 212 ~~~~~ 216 (220)
++++.
T Consensus 555 ~~e~~ 559 (916)
T 3pih_A 555 VDELL 559 (916)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 88753
No 309
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.30 E-value=1.9e-07 Score=83.40 Aligned_cols=66 Identities=8% Similarity=-0.081 Sum_probs=48.3
Q ss_pred HHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHH--HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 146 AEEEGLFFME--TSALDSTNVEAAFEVVIREIYS--NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 146 ~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~--~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
+.++.+.++| ++++++.....+...+.+.+.+ +.+++++||+.+.+. +||++..+++|++..+...
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEEET
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEEcC
Confidence 3456677788 7888887777764444444433 788999999998764 8999999999987765443
No 310
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.27 E-value=9.3e-07 Score=69.62 Aligned_cols=58 Identities=26% Similarity=0.399 Sum_probs=35.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCc-ccceeeeeEEEEEeCCeEEEEEEEecCCcc
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSK-ATIGVEFQTQVVDIDGKEVKAQIWDTAGQE 74 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~-~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~ 74 (220)
...++++++|.+|||||||+|+|.+......+. +..+... ..+.... .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 345899999999999999999999876433332 2222211 1222222 46789999975
No 311
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.25 E-value=2.1e-07 Score=83.76 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=65.6
Q ss_pred HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703 142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS 211 (220)
Q Consensus 142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~ 211 (220)
|.++..++ .+.++| ++++|+..++.+++.|.++...+.++++++|+++++. .||+|++| ++|+++.+|+
T Consensus 516 A~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~ 594 (972)
T 2r6f_A 516 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGT 594 (972)
T ss_dssp HHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEEC
T ss_pred HHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecC
Confidence 55666553 678898 9999999999999999988777999999999999876 69999999 8999999999
Q ss_pred Cccccc
Q 027703 212 MMDFSC 217 (220)
Q Consensus 212 ~~~~~~ 217 (220)
++++..
T Consensus 595 ~~e~~~ 600 (972)
T 2r6f_A 595 PEEVMN 600 (972)
T ss_dssp TTTTTT
T ss_pred HHHHHh
Confidence 988753
No 312
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.23 E-value=4.5e-07 Score=70.69 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=34.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcch
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQER 75 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~~ 75 (220)
++++++|.+|+|||||+|+|.+........ +.+.......+.... .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEEEeCC---CEEEEECCCccc
Confidence 689999999999999999999886543322 111111111222222 467899999764
No 313
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.20 E-value=6.1e-07 Score=65.71 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-.++++||+|+|||||++.+.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998863
No 314
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.18 E-value=1.6e-06 Score=74.71 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=39.5
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEE----e-CCeEEEEEEEecCCcch
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVD----I-DGKEVKAQIWDTAGQER 75 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~----~-~~~~~~~~~~d~~g~~~ 75 (220)
..+..+|+|+|++|+|||||+|+|++.........+. .+...+.+. + ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt-~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV-QSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS-SCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCC-CCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4567899999999999999999999986321111111 111111111 1 12234677899999753
No 315
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=1.1e-06 Score=64.49 Aligned_cols=50 Identities=2% Similarity=-0.050 Sum_probs=35.1
Q ss_pred HHHHhCCeEEE----eccCCCCCHHHHHHHHHHHHHHHhhhhhcC---cchhhhccccce
Q 027703 145 LAEEEGLFFME----TSALDSTNVEAAFEVVIREIYSNISRKVLN---SDAYKAELSVNR 197 (220)
Q Consensus 145 ~~~~~~~~~~~----~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~---h~~~~~~~~a~~ 197 (220)
++.++++.++| ++++|+.....+.+.+.+ .+.++++++ |+..++..++++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc
Confidence 67778888888 577776655555554433 245477777 588999999998
No 316
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.13 E-value=1.8e-07 Score=84.20 Aligned_cols=74 Identities=12% Similarity=0.244 Sum_probs=65.2
Q ss_pred HHHHHHHh---CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703 142 GKSLAEEE---GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG 210 (220)
Q Consensus 142 ~~~~~~~~---~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g 210 (220)
|++++.++ ++.++| |+++|...+.++++.|.++..++.+++++||+++++. .||++++| ++|+++..|
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEec
Confidence 55777654 788999 9999999999999999988777899999999999975 79999999 799999999
Q ss_pred CCcccc
Q 027703 211 SMMDFS 216 (220)
Q Consensus 211 ~~~~~~ 216 (220)
+++++.
T Consensus 936 ~~~el~ 941 (972)
T 2r6f_A 936 TPEEVA 941 (972)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 988764
No 317
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.12 E-value=3.4e-07 Score=82.66 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=64.4
Q ss_pred HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703 142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS 211 (220)
Q Consensus 142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~ 211 (220)
|.++..++ .+.++| ++++|+..++.+++.|.++...+.++++++|+++++. .||+|++| ++|+++.+|+
T Consensus 533 A~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~ 611 (993)
T 2ygr_A 533 ATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGP 611 (993)
T ss_dssp HHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEEC
T ss_pred HHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeC
Confidence 55565553 678888 9999999999999999988777999999999999876 79999999 7999999999
Q ss_pred Ccccc
Q 027703 212 MMDFS 216 (220)
Q Consensus 212 ~~~~~ 216 (220)
++++.
T Consensus 612 ~~e~~ 616 (993)
T 2ygr_A 612 YDELL 616 (993)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87764
No 318
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.10 E-value=5.1e-07 Score=80.75 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=65.1
Q ss_pred HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCCC
Q 027703 142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKGS 211 (220)
Q Consensus 142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g~ 211 (220)
|.++..++ .+.++| |+++|+..++.+++.+.++...+.++++++|+++.+. .||+|++| ++|+++..|+
T Consensus 391 A~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 391 ATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGP 469 (842)
T ss_dssp HHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEEC
T ss_pred HHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecC
Confidence 55556666 378888 9999999999999999888777999999999999765 69999999 8999999999
Q ss_pred Cccccc
Q 027703 212 MMDFSC 217 (220)
Q Consensus 212 ~~~~~~ 217 (220)
++++.-
T Consensus 470 ~~~~~~ 475 (842)
T 2vf7_A 470 PEGLKH 475 (842)
T ss_dssp GGGGGG
T ss_pred HHHHHh
Confidence 988754
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.09 E-value=9.5e-07 Score=70.29 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEF 39 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~ 39 (220)
--++++|++||||||+++.|.+...
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999998843
No 320
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.07 E-value=1.2e-05 Score=65.71 Aligned_cols=97 Identities=22% Similarity=0.189 Sum_probs=67.9
Q ss_pred CcchhhhhhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHH----HHH
Q 027703 72 GQERFRAVTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKS----LAE 147 (220)
Q Consensus 72 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~----~~~ 147 (220)
.++.|......++..++.+++|+|+++..+ .|...+..... ..|+++++||.|+... ....+.... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 356778888888888999999999998663 23333333322 5789999999998642 233333333 344
Q ss_pred HhCC---eEEEeccCCCCCHHHHHHHHHHHH
Q 027703 148 EEGL---FFMETSALDSTNVEAAFEVVIREI 175 (220)
Q Consensus 148 ~~~~---~~~~~Sa~~~~~v~~l~~~l~~~~ 175 (220)
..+. .++.+||+++.|++++++.+.++.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4555 688899999999999999987654
No 321
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=1.1e-05 Score=64.71 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
..--++++|+|||||||+++.|.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999873
No 322
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.06 E-value=2.6e-07 Score=83.41 Aligned_cols=74 Identities=11% Similarity=0.216 Sum_probs=65.1
Q ss_pred HHHHHHHh---CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeee------ecCCCCCCC
Q 027703 142 GKSLAEEE---GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLV------KDGANSSKG 210 (220)
Q Consensus 142 ~~~~~~~~---~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~------~~G~~~~~g 210 (220)
|++++.++ ++.++| |+++|...+.++++.|.++...+.+++++||+++++. .||++++| ++|+++..|
T Consensus 875 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gg~~~G~Iv~~G 953 (993)
T 2ygr_A 875 ASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWIIDLGPEGGAGGGTVVAQG 953 (993)
T ss_dssp HHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSTTSCSEEEEEE
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEECCCcCCCCCEEEEec
Confidence 55777654 788999 9999999999999999888777999999999999975 79999999 799999999
Q ss_pred CCcccc
Q 027703 211 SMMDFS 216 (220)
Q Consensus 211 ~~~~~~ 216 (220)
+++++.
T Consensus 954 ~~~el~ 959 (993)
T 2ygr_A 954 TPEDVA 959 (993)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 988764
No 323
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.05 E-value=2.5e-06 Score=61.24 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSK 44 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~ 44 (220)
-++++||+|||||||++.|.+.. +..+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 58999999999999999999987 54443
No 324
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.04 E-value=7.3e-07 Score=63.37 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred HHHHHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeee
Q 027703 143 KSLAEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVK 202 (220)
Q Consensus 143 ~~~~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~ 202 (220)
++++.++++.++| ++++|..+...+.+.+.++..++.+++++||+. .+..+||++++|+
T Consensus 76 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVIRIS 136 (148)
T ss_dssp HHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEEEEE
Confidence 3455678999999 999999999999998887766678999999999 5678999999994
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.01 E-value=0.00012 Score=60.91 Aligned_cols=84 Identities=15% Similarity=0.004 Sum_probs=47.7
Q ss_pred EEEEEEecCCcchhhhh----hH--HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCC
Q 027703 63 VKAQIWDTAGQERFRAV----TS--AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRD 136 (220)
Q Consensus 63 ~~~~~~d~~g~~~~~~~----~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~ 136 (220)
+.+.+.||+|....... .. .....++.+++|.|+...+..... ...+... -.+..++.||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~---- 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGS---- 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSC----
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCc----
Confidence 56778999996432111 11 122357889999998764432222 2222221 23446789999953
Q ss_pred CCHHHHHHHHHHhCCeEEEe
Q 027703 137 VSTEEGKSLAEEEGLFFMET 156 (220)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (220)
.....+.+.....++++..+
T Consensus 253 ~~gG~~ls~~~~~g~PI~fi 272 (443)
T 3dm5_A 253 AKGGGALSAVAATGAPIKFI 272 (443)
T ss_dssp SSHHHHHHHHHTTCCCEEEE
T ss_pred ccccHHHHHHHHHCCCEEEE
Confidence 23445556666677776543
No 326
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.95 E-value=4.2e-06 Score=62.31 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.++|+||||||||||++.|.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998864
No 327
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.95 E-value=2.4e-05 Score=61.51 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=67.6
Q ss_pred ecCCcc-hhhhhhHHhhcCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHH
Q 027703 69 DTAGQE-RFRAVTSAYYRGAVGALVVYDITRRSSFDS--VKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSL 145 (220)
Q Consensus 69 d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~ 145 (220)
..||+. .........+..+|+++.|+|+.++.+... +.+++ ...|.++++||+|+.... ..+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~~ 74 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKEH 74 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHHH
Confidence 356654 344455667889999999999998876642 33332 357899999999986421 11222333
Q ss_pred HHHhCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 027703 146 AEEEGLFFMETSALDSTNVEAAFEVVIREIYS 177 (220)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 177 (220)
..+.+++++.+|+.++.++.++++.+.+.+.+
T Consensus 75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 75 FENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 44456788999999999999999988887754
No 328
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.95 E-value=6.4e-06 Score=66.81 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 164 VEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 164 v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
+.+++..|.++..+ +.++++++|.............+...|+++.++..
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred HHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 45666666766665 78899999987765544445566777888777653
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.92 E-value=5.1e-06 Score=61.17 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhhCc
Q 027703 17 IVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~ 38 (220)
++++||||||||||+++|.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999874
No 330
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.90 E-value=5.8e-06 Score=61.51 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-++++||||||||||++.|.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999999873
No 331
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.89 E-value=6.1e-06 Score=62.51 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEF 39 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~ 39 (220)
-++|+||||||||||++.|.+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 589999999999999999999743
No 332
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.89 E-value=3.3e-06 Score=76.34 Aligned_cols=61 Identities=5% Similarity=-0.096 Sum_probs=44.4
Q ss_pred HHhCCeEEE--eccCCCCCHHHHHHHHHHHH-H-HHhhhhhcCcchhhhccccceeee-eecCCCCC
Q 027703 147 EEEGLFFME--TSALDSTNVEAAFEVVIREI-Y-SNISRKVLNSDAYKAELSVNRVTL-VKDGANSS 208 (220)
Q Consensus 147 ~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~-~-~~~~~~~~~h~~~~~~~~a~~~~~-~~~G~~~~ 208 (220)
.++.+.++| ++++|+.....+...+.+.+ . .+.+++++||+++.+ .++++.-- +.++++..
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 346677888 99999988888886666665 3 378999999998765 56777643 56666543
No 333
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.88 E-value=6.5e-06 Score=62.27 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=32.4
Q ss_pred eccCCCCCHHHHHHHHHHHHHHH-------hhhhhcCcchhhhccccceeeee
Q 027703 156 TSALDSTNVEAAFEVVIREIYSN-------ISRKVLNSDAYKAELSVNRVTLV 201 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~~l~~~~~~~-------~~~~~~~h~~~~~~~~a~~~~~~ 201 (220)
+++++......+.+.+.+...+. ...++++|+++++...+++++.-
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLLN 207 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHHH
Confidence 78889888888888877665431 33466777777777777776653
No 334
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.87 E-value=7.2e-06 Score=60.03 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-++|+||+|||||||+++|.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998863
No 335
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.82 E-value=1e-05 Score=60.61 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=23.7
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.....++|+|+||||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998874
No 336
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.80 E-value=0.00013 Score=60.54 Aligned_cols=85 Identities=13% Similarity=-0.001 Sum_probs=49.1
Q ss_pred EEEEEEecCCcch--hh----hhhHH--hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCC
Q 027703 63 VKAQIWDTAGQER--FR----AVTSA--YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSI 134 (220)
Q Consensus 63 ~~~~~~d~~g~~~--~~----~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~ 134 (220)
..+.+.||+|... .. ..... ....++.+++|.|+...+..... ...+... -.+..++.||.|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~-- 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGT-- 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGC--
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEeccccc--
Confidence 4567899999643 11 11111 11246888999998764332222 2222222 23467889999953
Q ss_pred CCCCHHHHHHHHHHhCCeEEEec
Q 027703 135 RDVSTEEGKSLAEEEGLFFMETS 157 (220)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (220)
.....+.+.....+.++..++
T Consensus 252 --a~~G~als~~~~~g~Pi~fig 272 (433)
T 3kl4_A 252 --AKGGGALSAVVATGATIKFIG 272 (433)
T ss_dssp --SCHHHHHHHHHHHTCEEEEEE
T ss_pred --ccchHHHHHHHHHCCCEEEEE
Confidence 245566677777788876544
No 337
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.80 E-value=6.7e-06 Score=65.38 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSN 42 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~ 42 (220)
.++++|+||||||||+|.|.+...+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~ 201 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRT 201 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC------
T ss_pred EEEEECCCCCCHHHHHHHhcccccccc
Confidence 689999999999999999998754443
No 338
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=1.2e-05 Score=59.42 Aligned_cols=62 Identities=6% Similarity=-0.023 Sum_probs=38.7
Q ss_pred HHHhCCeEEEe-ccCCCCCHHHHHHHHHHHHHHHhhhh----hcCcchhhhccccceeeeeecCCCCCCC
Q 027703 146 AEEEGLFFMET-SALDSTNVEAAFEVVIREIYSNISRK----VLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 146 ~~~~~~~~~~~-Sa~~~~~v~~l~~~l~~~~~~~~~~~----~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
..++++.++|. ...+... ....+.+.+.+....+++ .++|+.. ..+.|++..+.+|+++.-.
T Consensus 103 ~~~~dvlilDE~g~~~~~~-~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFS-QLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp SSCCCCEEECCCSTTTTTC-SHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred ccCCCEEEEeCCCcccccc-HHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 45677888884 2333222 246666666666554544 3448775 4678888888888877643
No 339
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.76 E-value=1.3e-05 Score=58.97 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-.++++|+||||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999986
No 340
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.76 E-value=7e-05 Score=59.29 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=48.9
Q ss_pred EEEEEEecCCcch--hhhhhH------HhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCc-EEEEEecCCCCC
Q 027703 63 VKAQIWDTAGQER--FRAVTS------AYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVG-RMLVGNKCDLDS 133 (220)
Q Consensus 63 ~~~~~~d~~g~~~--~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~k~Dl~~ 133 (220)
+.+.+.||+|... ...... .....++.+++|.|..... ........+.. ..+ ..++.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4577899999765 211111 1234688899999986432 22222222222 244 567899999532
Q ss_pred CCCCCHHHHHHHHHHhCCeEEEec
Q 027703 134 IRDVSTEEGKSLAEEEGLFFMETS 157 (220)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~S 157 (220)
....+.++....+.++..++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~ 273 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG 273 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE
T ss_pred ----chHHHHHHHHHHCcCEEEEe
Confidence 34555667777777776643
No 341
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.73 E-value=0.00025 Score=59.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|+++|++||||||++..|...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999773
No 342
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.72 E-value=1.7e-05 Score=59.29 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 343
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.71 E-value=1.9e-05 Score=62.68 Aligned_cols=28 Identities=32% Similarity=0.215 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNS 43 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~ 43 (220)
.++++|+||||||||+|+|.+...+..+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G 198 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVS 198 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred eEEEECCCCCcHHHHHHHhccccccccc
Confidence 5799999999999999999998655443
No 344
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.69 E-value=2.9e-05 Score=62.92 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcC-CCCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEF-DSNSK 44 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~-~~~~~ 44 (220)
.++++|+||||||||+|.|.+... +..+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCC
Confidence 589999999999999999999865 54433
No 345
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.67 E-value=1.5e-05 Score=64.90 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCcCC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNEFD 40 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~~~ 40 (220)
-.++|+|++|||||||++.|.+...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 36999999999999999999998543
No 346
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=2.7e-05 Score=58.35 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-++++||+|||||||+++|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999999874
No 347
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=3.1e-05 Score=57.50 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
--++|+||+|||||||+++|.+..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998763
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.61 E-value=1e-05 Score=58.81 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeE
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKE 62 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~ 62 (220)
.++|+|++|||||||++.|.+...+... ..+.+.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~--------~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGL--------RVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTC--------CEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCC--------ceEEEEEcCcc
Confidence 5899999999999999999987422111 15667666643
No 349
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.61 E-value=4.1e-05 Score=60.77 Aligned_cols=28 Identities=39% Similarity=0.502 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNSK 44 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~~ 44 (220)
.++++|+||||||||+|+|. ...+..+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 57999999999999999999 76555544
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.61 E-value=2.8e-05 Score=63.42 Aligned_cols=57 Identities=4% Similarity=-0.008 Sum_probs=41.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHH-HhhhhhcCcchhhhccccceeeeeecCCCCCCCCCcccc
Q 027703 157 SALDSTNVEAAFEVVIREIYS-NISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFS 216 (220)
Q Consensus 157 Sa~~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~~~~~ 216 (220)
++++......+.+.+.++..+ +.++++++|. ....++++++.++++ ++..++++++.
T Consensus 297 ~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 297 SLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp ----CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 567888888998888777654 7888888854 567788999998876 77777777753
No 351
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.60 E-value=3.8e-05 Score=55.64 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..++++|++||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46999999999999999999764
No 352
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.60 E-value=3.4e-05 Score=59.29 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.0
Q ss_pred EEEEEECCCCCcHHHHHHHHh---hCcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFA---RNEF 39 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~---~~~~ 39 (220)
..++|+|+||||||||++.|. +...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 479999999999999999999 7643
No 353
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.60 E-value=1.8e-05 Score=60.14 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=15.2
Q ss_pred EEEEECCCCCcHHHHHHHHh-hCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFA-RNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~-~~~ 38 (220)
-++++||+|||||||++.|. +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 58999999999999999999 763
No 354
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.59 E-value=5.2e-06 Score=70.04 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=55.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCcCCCCCcccceeeeeEEEEEeCCeEEEEEEEecCCcc--hhhhhh--------HHh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVDIDGKEVKAQIWDTAGQE--RFRAVT--------SAY 83 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~~~d~~g~~--~~~~~~--------~~~ 83 (220)
.+.|+++|.+||||||+.++|........ ..+..+..........+......+||..|.. .....+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999976532110 1111100000000001111233467887763 222222 445
Q ss_pred hcCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q 027703 84 YRGAVGALVVYDITRRSSFDSVKRWLEELTTH 115 (220)
Q Consensus 84 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~ 115 (220)
+....+.++|+|.++. ++.....|+..+...
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 5556777889999886 566656666655443
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.59 E-value=4.8e-05 Score=60.69 Aligned_cols=29 Identities=28% Similarity=0.185 Sum_probs=24.6
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhCcC
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARNEF 39 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~~~ 39 (220)
.....-++|+|+||||||||++.|.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34456799999999999999999998753
No 356
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.59 E-value=3.7e-05 Score=57.13 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
..++++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999875
No 357
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.59 E-value=0.00014 Score=60.69 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.4
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..+..=|+|+|++++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 445677999999999999999999863
No 358
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.58 E-value=3.7e-05 Score=57.12 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
--++|+|++||||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999875
No 359
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.57 E-value=3.5e-05 Score=64.83 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSNS 43 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~~ 43 (220)
-++|+||||||||||++.|.+...+..+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 4799999999999999999987555433
No 360
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=4.1e-05 Score=55.27 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+++|++||||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.56 E-value=4.2e-05 Score=58.73 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.-|+|+|++|||||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999885
No 362
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.54 E-value=0.00015 Score=59.84 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHH-HhhhhhcCcch-------------------hhhccccceeeeeecCC
Q 027703 165 EAAFEVVIREIYS-NISRKVLNSDA-------------------YKAELSVNRVTLVKDGA 205 (220)
Q Consensus 165 ~~l~~~l~~~~~~-~~~~~~~~h~~-------------------~~~~~~a~~~~~~~~G~ 205 (220)
.+++..|.++..+ +.++++++|.. .....++|.+++|+.|+
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 6677778877766 78999999982 22366789999999874
No 363
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.44 E-value=5.7e-05 Score=64.42 Aligned_cols=61 Identities=13% Similarity=-0.015 Sum_probs=55.0
Q ss_pred HHHHHHHh--CCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecC
Q 027703 142 GKSLAEEE--GLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDG 204 (220)
Q Consensus 142 ~~~~~~~~--~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G 204 (220)
+++++.++ ++.++| ++++|+.....+.+.|.++.. +.+++++||++..+. +||++++|++|
T Consensus 409 a~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~ 473 (517)
T 4ad8_A 409 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQ 473 (517)
T ss_dssp HHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECC
T ss_pred HHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEecc
Confidence 77888899 999999 999999999999999988765 899999999999876 69999999665
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.44 E-value=7.3e-05 Score=55.51 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
..-|+++|++||||||+.+.|.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998763
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.42 E-value=8.7e-05 Score=59.05 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
..-++|+|++|||||||++.|.+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999863
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.41 E-value=8.6e-05 Score=54.65 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999765
No 367
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.41 E-value=7.5e-05 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFD 40 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~ 40 (220)
-.+|+|+||+|||||+++|.....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3689999999999999999775443
No 368
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.40 E-value=7.8e-05 Score=55.35 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~ 36 (220)
+|+|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999988
No 369
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.39 E-value=8.9e-05 Score=63.07 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDSN 42 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~~ 42 (220)
.++|+|++|||||||+++|++...+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 489999999999999999999864443
No 370
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.37 E-value=0.00011 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 371
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.37 E-value=7.1e-05 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.++++|++|+|||||++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999864
No 372
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.36 E-value=0.00012 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+.|+++|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999873
No 373
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.36 E-value=2.3e-05 Score=63.69 Aligned_cols=68 Identities=9% Similarity=0.015 Sum_probs=57.8
Q ss_pred HHHHH---------HHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCC
Q 027703 142 GKSLA---------EEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKG 210 (220)
Q Consensus 142 ~~~~~---------~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g 210 (220)
+++++ .++++.++| +|.+|+.....+++.+.++. .+++++|| ++. .++++++|++|+++..|
T Consensus 277 A~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~---~~~~i~~l~~G~i~~~g 349 (359)
T 2o5v_A 277 ALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP---GAALTLRAQAGRFTPVA 349 (359)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT---TCSEEEEEETTEEEECC
T ss_pred HHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc---cCCEEEEEECCEEEecC
Confidence 67777 567888999 99999999999999887653 67888999 444 89999999999999999
Q ss_pred CCcccc
Q 027703 211 SMMDFS 216 (220)
Q Consensus 211 ~~~~~~ 216 (220)
+++++.
T Consensus 350 ~~~~~~ 355 (359)
T 2o5v_A 350 DEEMQA 355 (359)
T ss_dssp CTTTSC
T ss_pred CHHHHh
Confidence 998874
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.34 E-value=9.4e-05 Score=61.31 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhCcCCC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNEFDS 41 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~~~~ 41 (220)
-++|+||+|||||||++.|++...+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 48999999999999999999875443
No 375
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=0.00011 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-|+++|++||||||+.+.|....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999997653
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.34 E-value=0.00011 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=22.8
Q ss_pred eeeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 12 EYLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 12 ~~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
....-|+|.|++||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999886
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.33 E-value=8.7e-05 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEEEEECCCCCcHHHHHHHHh---hCcC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFA---RNEF 39 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~---~~~~ 39 (220)
..|+|+|++||||||+++.|. +..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 479999999999999999998 6533
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.33 E-value=0.00012 Score=58.46 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
--++|+|++|||||||++.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999874
No 379
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.32 E-value=0.00011 Score=57.39 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
++++||||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999986
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.32 E-value=0.00011 Score=60.12 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.++|+|++|||||||++.|.+..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999999874
No 381
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.28 E-value=2e-05 Score=59.96 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.3
Q ss_pred EEEECCCCCcHHHHHHHHhhCcCCCCC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEFDSNS 43 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~~~~~ 43 (220)
++|+||||||||||+++|.+...+..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCC
Confidence 478999999999999999998766544
No 382
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.28 E-value=0.00014 Score=58.17 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.+=++|+|++|||||||++.|.+..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999997763
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.28 E-value=0.00015 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.-++++|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35899999999999999999875
No 384
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.27 E-value=0.00014 Score=61.31 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
--++|+|+||||||||++.|.+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 468999999999999999998873
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.26 E-value=0.00017 Score=51.07 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 027703 17 IVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~ 36 (220)
.+|+||||+||||++.+|..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999863
No 386
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00019 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
...|+|+|++||||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999886
No 387
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00013 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|+|.|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 388
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.24 E-value=0.00017 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 389
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.24 E-value=0.00018 Score=53.41 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..-++|+|++||||||+++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999874
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.21 E-value=0.00018 Score=55.30 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
++++||||+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999886
No 391
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.00021 Score=52.92 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+++|++||||||+.+.|...
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 392
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00019 Score=51.47 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 027703 16 KIVLIGDSAVGKSNLLSRF 34 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l 34 (220)
-|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.19 E-value=0.0002 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999553
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.17 E-value=0.00022 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999653
No 395
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=0.00021 Score=57.49 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.++++||||+|||||++.|.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999886
No 396
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.16 E-value=5.6e-05 Score=61.00 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHHhCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703 146 AEEEGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD 203 (220)
Q Consensus 146 ~~~~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~ 203 (220)
+.+|++.++| ++++|+.....+++++.++..++.+++++||+.+ +...||++++|+.
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~~~~l~~ 328 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVIRISL 328 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCEEEEEEe
Confidence 3468889999 9999999999999999887766779999999965 5778999999863
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.15 E-value=0.00024 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999774
No 398
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00031 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 399
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.12 E-value=0.00028 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 400
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.11 E-value=0.00026 Score=55.28 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
++++||+|+|||||++.|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999886
No 401
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.08 E-value=0.0004 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~ 36 (220)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 402
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.07 E-value=0.00039 Score=54.77 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.1
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
....|+|.|++|||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999776
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00035 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
...|+|.|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 367999999999999999999875
No 404
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.00038 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.|++.|++||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999753
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.02 E-value=0.00038 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+.|+++|||||||+|..++|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 406
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.02 E-value=0.00042 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+|.|++||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 407
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.0004 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-|.+.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999874
No 408
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00041 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999663
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00037 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 410
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.00041 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+|+|+|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 411
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.97 E-value=0.00063 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.8
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
...-|++.|++||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999765
No 412
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.95 E-value=0.00051 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-++++|++|||||||+.+|...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00052 Score=49.08 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 414
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.0006 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
...|++.|++||||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999874
No 415
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.92 E-value=0.00061 Score=52.86 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=59.3
Q ss_pred hhHHhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHhCCeEEEecc
Q 027703 79 VTSAYYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSA 158 (220)
Q Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (220)
........+|.++.|+|+.++.+..... +. + . ..|.+++.||+|+.... ..+....+....+.++ .+|+
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~--~~~~~~~~~~~~g~~v-~iSa 82 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEK--TTKKWVEFFKKQGKRV-ITTH 82 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHH--HHHHHHHHHHHTTCCE-EECC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHH--HHHHHHHHHHHcCCeE-EEEC
Confidence 4556778999999999998876654311 11 1 1 57889999999986421 1122233444556777 9999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027703 159 LDSTNVEAAFEVVIRE 174 (220)
Q Consensus 159 ~~~~~v~~l~~~l~~~ 174 (220)
.++.|+.++++.+.+.
T Consensus 83 ~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 83 KGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTSCHHHHHHHHCCCT
T ss_pred CCCcCHHHHHHHHHHh
Confidence 9999999999877654
No 416
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.91 E-value=0.00054 Score=51.04 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 027703 17 IVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~ 36 (220)
.+|+|+||+||||++.+|.-
T Consensus 26 ~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999843
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.90 E-value=0.00049 Score=56.20 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-++++||+|+|||||++.|.+.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999874
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.0002 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 419
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.90 E-value=0.00067 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 420
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.88 E-value=0.00052 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.-|++.|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00076 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 422
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.87 E-value=0.00067 Score=49.34 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+++|++||||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 423
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.87 E-value=0.00071 Score=51.79 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=21.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.++|++.|++||||||+.++|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 424
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.86 E-value=0.0006 Score=52.56 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-++|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3789999999999999999653
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.84 E-value=0.00065 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+.|++.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999653
No 426
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.83 E-value=0.00068 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999764
No 427
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.83 E-value=0.00063 Score=55.21 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~ 36 (220)
-.+++|+||+||||++++|..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 478999999999999999976
No 428
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.82 E-value=0.00082 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 429
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00061 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
-.|+++|++||||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 430
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.00069 Score=52.10 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.++++|++|+|||||++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 431
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00073 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+.|++.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999664
No 432
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00072 Score=49.01 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999999999743
No 433
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00091 Score=48.85 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 434
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.79 E-value=0.00076 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.79 E-value=0.001 Score=50.43 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.2
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
...-|++.|++||||||++++|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999876
No 436
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.79 E-value=0.00064 Score=60.51 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHhCCeEEE-----eccCCCCCH-HHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeecCCCCCCCCC
Q 027703 146 AEEEGLFFME-----TSALDSTNV-EAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSM 212 (220)
Q Consensus 146 ~~~~~~~~~~-----~Sa~~~~~v-~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~G~~~~~g~~ 212 (220)
+.++.+.++| ||++|+.+. ..+++.+.+ .+.+++++||+.+.+. ++ ...+.++++..+...
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~~~~ 719 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG--LPRLKNLHVAAREEA 719 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEECCS
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEEEcC
Confidence 3345556666 677777665 356666554 5788999999988865 44 344555555544433
No 437
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.79 E-value=0.00064 Score=53.06 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCeEEE--ec--cCCCCCH---HHHHHHHHHHHHH-HhhhhhcCcchhhhc
Q 027703 141 EGKSLAEEEGLFFME--TS--ALDSTNV---EAAFEVVIREIYS-NISRKVLNSDAYKAE 192 (220)
Q Consensus 141 ~~~~~~~~~~~~~~~--~S--a~~~~~v---~~l~~~l~~~~~~-~~~~~~~~h~~~~~~ 192 (220)
.+++++.++++.++| ++ .++.... .+++..|.++..+ +.++++++|+.....
T Consensus 126 ~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 126 GLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 456667778889999 55 5666554 7888888888754 889999999987653
No 438
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.78 E-value=0.0008 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999999875
No 439
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.78 E-value=0.0008 Score=49.16 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhh
Q 027703 16 KIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~ 36 (220)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 440
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.77 E-value=0.00096 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
+.|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 441
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.77 E-value=0.00068 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.-|++.|++||||||+.+.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999764
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.77 E-value=0.00074 Score=54.37 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 027703 17 IVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~ 36 (220)
.+|+||||+||||++.+|..
T Consensus 26 ~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999854
No 443
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.00071 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
..|++.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 444
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.76 E-value=0.023 Score=47.21 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFA 35 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~ 35 (220)
...|+++|++|+||||+...|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568889999999999999986
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.76 E-value=0.00081 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+.|+|.|++||||||+.+.|...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999743
No 446
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.76 E-value=0.00078 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
...|+++|++||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999765
No 447
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.74 E-value=0.00077 Score=56.07 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=0.0
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 027703 17 IVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~ 36 (220)
++|+||||+|||||+++|.+
T Consensus 29 ~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
No 448
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.73 E-value=0.00093 Score=48.30 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.|++|+|||++++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 449
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.72 E-value=0.00082 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+.|++.|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999654
No 450
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.71 E-value=0.00079 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-.++++|++||||||++..|.+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998753
No 451
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.68 E-value=0.00092 Score=48.96 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.68 E-value=0.00099 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999754
No 453
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.00074 Score=53.59 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred hhHHhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC--CHHHHHHHHHHhCCeEEE
Q 027703 79 VTSAYYRGAVGALVVYDITRRS-SFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV--STEEGKSLAEEEGLFFME 155 (220)
Q Consensus 79 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (220)
+......++|.+++|+|+.++. +...+.+++.... ...+|.+++.||.|+...... ..++........+..++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 3345678899999999998654 4555554443322 235677999999998753210 123334444556778888
Q ss_pred eccCCCCCHHHHHH
Q 027703 156 TSALDSTNVEAAFE 169 (220)
Q Consensus 156 ~Sa~~~~~v~~l~~ 169 (220)
+|+.++.+++++++
T Consensus 156 ~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQDSLADIIP 169 (307)
T ss_dssp CCHHHHTTCTTTGG
T ss_pred EecCCCCCHHHHHh
Confidence 88887777665544
No 454
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.67 E-value=0.001 Score=49.58 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhC
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..-|++.|++||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999765
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.66 E-value=0.00094 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|+|.|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 456
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.66 E-value=0.00098 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 457
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.0012 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|++.|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 458
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.62 E-value=0.0011 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
--++++|++||||||++..|.+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Confidence 458999999999999999998753
No 459
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.62 E-value=0.0012 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
-.+.+.|++|+|||+|++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998753
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.62 E-value=0.0036 Score=43.66 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.|++|+|||++.+.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999775
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.59 E-value=0.0013 Score=49.89 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.1
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-.++++++|++||||||+.++|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999654
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0014 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-.+.+.|++|+|||||++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999765
No 463
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.57 E-value=0.0016 Score=47.46 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..|++.|++||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999653
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.57 E-value=0.0014 Score=49.41 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
|.|+|||||||+|..++|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999765
No 465
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.55 E-value=0.0014 Score=47.55 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+|.|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999653
No 466
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0011 Score=53.45 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
+.+.||+|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999883
No 467
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.54 E-value=0.0016 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
+.|+|.|++||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999976
No 468
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.52 E-value=0.0021 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.3
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-.+.|++.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999764
No 469
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.50 E-value=0.0018 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
.-|++.|++||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0015 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~ 36 (220)
...|+|+|++||||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 471
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.49 E-value=0.00087 Score=57.48 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.9
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
....++++|++|||||||++.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34679999999999999999998874
No 472
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.48 E-value=0.0013 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.|++|+|||++++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 473
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.47 E-value=0.0011 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=15.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 474
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.42 E-value=0.0017 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-.+.+.||+|+||||+.+++...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.41 E-value=0.0018 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.||+|+|||+|.+++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999875
No 476
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.40 E-value=0.0019 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-+.+.|++|+|||||++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 477
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.37 E-value=0.0021 Score=47.49 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|+|.|++||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 478
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.36 E-value=0.0019 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.||+|+|||||++.+...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999875
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.36 E-value=0.0022 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhh
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~ 36 (220)
.+.|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 480
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.36 E-value=0.0023 Score=45.71 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.|++.|.+||||||+.+.|...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999663
No 481
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.002 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHhhCcC
Q 027703 17 IVLIGDSAVGKSNLLSRFARNEF 39 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~~~ 39 (220)
+.+.||+|+||||+++.+.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999988643
No 482
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.34 E-value=0.015 Score=47.01 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=54.3
Q ss_pred hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHhhCCCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHHhCCeEEEeccCCC
Q 027703 83 YYRGAVGALVVYDITRRSSFDSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDV-STEEGKSLAEEEGLFFMETSALDS 161 (220)
Q Consensus 83 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~k~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (220)
...++|.+++|.......+...+.+++...... ..|.+++.||.||...... ..++........+.+++.+|+.++
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 457788888776654334555555554433322 4566899999998742210 011222333456788899999999
Q ss_pred CCHHHHHHHH
Q 027703 162 TNVEAAFEVV 171 (220)
Q Consensus 162 ~~v~~l~~~l 171 (220)
.+++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999887653
No 483
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.32 E-value=0.0021 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.||+|+|||+|++++...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999875
No 484
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.29 E-value=0.0021 Score=48.70 Aligned_cols=55 Identities=7% Similarity=0.066 Sum_probs=36.2
Q ss_pred hCCeEEE-eccC---CCCCHHHHHHHHHHHHHH-HhhhhhcCcchhh--------hccccceeeeeec
Q 027703 149 EGLFFME-TSAL---DSTNVEAAFEVVIREIYS-NISRKVLNSDAYK--------AELSVNRVTLVKD 203 (220)
Q Consensus 149 ~~~~~~~-~Sa~---~~~~v~~l~~~l~~~~~~-~~~~~~~~h~~~~--------~~~~a~~~~~~~~ 203 (220)
+++.++| .+++ +.....+.+..+.+.+.+ +.++++++|.... +..+||.+++|+.
T Consensus 129 ~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 129 AKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp CCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 4556677 3333 233456677777777755 7889999998765 3577899999875
No 485
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.27 E-value=0.0025 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
+.+.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
No 486
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.27 E-value=0.0025 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.+.+.||+|+|||++.+.+...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.27 E-value=0.0024 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhh
Q 027703 15 FKIVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~ 36 (220)
.-|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.27 E-value=0.0032 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhhCc
Q 027703 14 LFKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 14 ~~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.-.+++.||+|+|||++.+.|....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3468999999999999999998764
No 489
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.25 E-value=0.0043 Score=43.29 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhhCc
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
..|.+.|++|+|||++.+.|....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998764
No 490
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.23 E-value=0.0024 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.++++||||+|||||++.|.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999998764
No 491
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.0024 Score=51.61 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhhC
Q 027703 16 KIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~ 37 (220)
-++|.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 492
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.19 E-value=0.0027 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhhCc
Q 027703 16 KIVLIGDSAVGKSNLLSRFARNE 38 (220)
Q Consensus 16 ki~ilG~~g~GKSTll~~l~~~~ 38 (220)
.++|.|++|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.19 E-value=0.0026 Score=53.87 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
++++||||+|||||+++|.+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999886
No 494
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.18 E-value=0.014 Score=48.56 Aligned_cols=64 Identities=25% Similarity=0.416 Sum_probs=40.3
Q ss_pred ceeeEEEEEECCCCCcHHHHHHHHhh------------------CcCCC---CCcccceeeeeEEEE--Ee-CCeEEEEE
Q 027703 11 EEYLFKIVLIGDSAVGKSNLLSRFAR------------------NEFDS---NSKATIGVEFQTQVV--DI-DGKEVKAQ 66 (220)
Q Consensus 11 ~~~~~ki~ilG~~g~GKSTll~~l~~------------------~~~~~---~~~~t~~~~~~~~~i--~~-~~~~~~~~ 66 (220)
..+..=|+|+|+.++|||+|+|.|+. ..|.. ...-|.|+-.+...+ .. ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 45677799999999999999996652 12322 112233332222111 11 55678899
Q ss_pred EEecCCcc
Q 027703 67 IWDTAGQE 74 (220)
Q Consensus 67 ~~d~~g~~ 74 (220)
+.||.|..
T Consensus 144 llDTEG~~ 151 (457)
T 4ido_A 144 LMDTQGTF 151 (457)
T ss_dssp EEEECCBT
T ss_pred EEeccCCC
Confidence 99999964
No 495
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.18 E-value=0.0023 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhhC
Q 027703 17 IVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~~ 37 (220)
+.+.||||+||||+..+|...
T Consensus 61 ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998775
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.13 E-value=0.0028 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
.-+.+.||||+|||+|.+.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35777899999999999999875
No 497
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.13 E-value=0.0032 Score=49.55 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.0
Q ss_pred eeEEEEEECCCCCcHHHHHHHHhhC
Q 027703 13 YLFKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 13 ~~~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
+...+.+.||+|+|||++.+.+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999877654
No 498
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.11 E-value=0.004 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhhC
Q 027703 15 FKIVLIGDSAVGKSNLLSRFARN 37 (220)
Q Consensus 15 ~ki~ilG~~g~GKSTll~~l~~~ 37 (220)
..++++|++|+||||+.+.|...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999988653
No 499
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.09 E-value=0.0029 Score=51.51 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHH-hCCeEEE--eccCCCCCHHHHHHHHHHHHHHHhhhhhcCcchhhhccccceeeeeec
Q 027703 145 LAEE-EGLFFME--TSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKD 203 (220)
Q Consensus 145 ~~~~-~~~~~~~--~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~h~~~~~~~~a~~~~~~~~ 203 (220)
+..+ +++.++| ++++|+.....+.+.+.++ ..+.+++++||++. +..+||++++|+.
T Consensus 301 l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~th~~~-~~~~~d~~~~l~k 360 (371)
T 3auy_A 301 LIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-KSIPQMIIITHHRE-LEDVADVIINVKK 360 (371)
T ss_dssp HHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CSCSEEEEEESCGG-GGGGCSEEEEEEE
T ss_pred HhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-ccCCeEEEEEChHH-HHhhCCEEEEEEe
Confidence 3446 7888999 9999999999999988764 23457999999987 5789999999974
No 500
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.06 E-value=0.0012 Score=53.84 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhh
Q 027703 17 IVLIGDSAVGKSNLLSRFAR 36 (220)
Q Consensus 17 i~ilG~~g~GKSTll~~l~~ 36 (220)
.+|+|+||+||||++.+|.-
T Consensus 28 ~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 28 VAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999853
Done!