Query 027704
Match_columns 220
No_of_seqs 207 out of 970
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 13:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4018 Uncharacterized conser 100.0 3.8E-42 8.2E-47 279.4 13.2 193 1-206 1-195 (215)
2 smart00591 RWD domain in RING 99.9 4.8E-22 1E-26 147.7 12.3 106 11-124 1-106 (107)
3 PF05773 RWD: RWD domain; Int 99.9 1.3E-21 2.8E-26 146.5 11.7 112 3-122 1-113 (113)
4 KOG4445 Uncharacterized conser 99.5 3.9E-14 8.5E-19 120.8 7.7 110 11-125 2-111 (368)
5 KOG1814 Predicted E3 ubiquitin 99.2 1.6E-10 3.4E-15 102.7 9.9 120 1-127 1-136 (445)
6 KOG1035 eIF-2alpha kinase GCN2 99.1 1.2E-11 2.5E-16 121.9 -0.4 116 4-130 6-121 (1351)
7 KOG1763 Uncharacterized conser 98.1 3.2E-06 7E-11 72.6 3.7 53 147-201 223-275 (343)
8 COG5252 Uncharacterized conser 97.0 0.00031 6.6E-09 58.9 2.0 65 148-214 209-280 (299)
9 KOG0309 Conserved WD40 repeat- 96.8 0.021 4.6E-07 55.2 12.0 80 37-120 448-530 (1081)
10 PTZ00390 ubiquitin-conjugating 94.6 0.35 7.5E-06 38.3 9.0 68 6-82 5-72 (152)
11 KOG0416 Ubiquitin-protein liga 93.6 1.1 2.5E-05 36.0 10.0 101 11-128 9-113 (189)
12 PLN00172 ubiquitin conjugating 93.5 0.58 1.3E-05 36.7 8.2 67 7-82 5-71 (147)
13 cd00195 UBCc Ubiquitin-conjuga 93.4 0.6 1.3E-05 36.0 8.1 103 9-123 5-110 (141)
14 PF00179 UQ_con: Ubiquitin-con 92.3 0.86 1.9E-05 35.1 7.5 66 9-82 3-68 (140)
15 smart00212 UBCc Ubiquitin-conj 91.5 1.6 3.5E-05 33.8 8.4 67 9-83 4-70 (145)
16 COG5078 Ubiquitin-protein liga 91.4 2 4.2E-05 34.2 8.7 71 5-83 7-77 (153)
17 KOG0419 Ubiquitin-protein liga 91.4 0.68 1.5E-05 35.7 5.8 26 57-82 49-74 (152)
18 KOG0417 Ubiquitin-protein liga 91.2 0.6 1.3E-05 36.7 5.5 41 38-82 31-71 (148)
19 KOG0418 Ubiquitin-protein liga 90.7 0.51 1.1E-05 38.5 4.8 50 56-105 50-102 (200)
20 KOG0420 Ubiquitin-protein liga 88.9 1.8 3.9E-05 34.9 6.5 63 39-107 61-126 (184)
21 PF08694 UFC1: Ubiquitin-fold 86.3 0.66 1.4E-05 36.3 2.6 28 58-85 74-101 (161)
22 KOG0422 Ubiquitin-protein liga 85.5 4.1 9E-05 31.8 6.6 39 38-81 33-71 (153)
23 KOG0421 Ubiquitin-protein liga 84.0 3.4 7.4E-05 32.4 5.6 46 58-103 75-122 (175)
24 KOG0425 Ubiquitin-protein liga 81.6 3.2 6.9E-05 33.0 4.7 28 57-84 51-78 (171)
25 KOG3299 Uncharacterized conser 79.4 1.8 3.8E-05 35.9 2.7 57 70-129 2-59 (206)
26 KOG0427 Ubiquitin conjugating 78.0 16 0.00035 28.2 7.4 65 8-83 20-85 (161)
27 PRK02289 4-oxalocrotonate taut 77.2 5.6 0.00012 26.0 4.2 35 75-109 1-35 (60)
28 PRK02220 4-oxalocrotonate taut 77.0 5.8 0.00013 25.7 4.3 35 75-109 1-35 (61)
29 PF05743 UEV: UEV domain; Int 76.6 6.7 0.00015 29.7 5.1 26 59-84 48-73 (121)
30 KOG0896 Ubiquitin-conjugating 75.7 2.6 5.6E-05 32.6 2.5 24 60-83 57-80 (138)
31 PRK00745 4-oxalocrotonate taut 74.6 7.6 0.00016 25.2 4.4 36 75-110 1-36 (62)
32 PF14461 Prok-E2_B: Prokaryoti 73.2 5.5 0.00012 30.5 3.9 26 59-84 36-61 (133)
33 KOG0424 Ubiquitin-protein liga 72.0 7.9 0.00017 30.4 4.4 26 57-82 54-79 (158)
34 PF06113 BRE: Brain and reprod 71.8 6.8 0.00015 35.0 4.6 61 7-84 270-331 (333)
35 TIGR00013 taut 4-oxalocrotonat 71.6 9.8 0.00021 24.7 4.4 34 76-109 1-35 (63)
36 cd00491 4Oxalocrotonate_Tautom 69.7 12 0.00025 23.8 4.3 34 76-109 1-34 (58)
37 PF01361 Tautomerase: Tautomer 69.0 9.1 0.0002 24.7 3.7 34 76-109 1-34 (60)
38 PRK01964 4-oxalocrotonate taut 66.0 14 0.0003 24.3 4.2 35 75-109 1-35 (64)
39 KOG0428 Non-canonical ubiquiti 59.4 22 0.00047 30.5 5.0 21 62-82 60-80 (314)
40 KOG3357 Uncharacterized conser 59.0 7.7 0.00017 29.9 2.1 28 58-85 77-104 (167)
41 PF15594 Imm30: Immunity prote 57.9 27 0.00059 26.3 5.0 46 12-77 6-51 (124)
42 KOG0894 Ubiquitin-protein liga 56.9 11 0.00023 31.7 2.7 23 62-84 55-77 (244)
43 KOG0895 Ubiquitin-conjugating 56.8 12 0.00026 38.3 3.5 27 57-83 896-922 (1101)
44 PRK01271 4-oxalocrotonate taut 55.5 27 0.00058 24.3 4.3 34 75-108 1-35 (76)
45 PF14462 Prok-E2_E: Prokaryoti 54.3 13 0.00027 28.5 2.6 20 58-77 41-60 (122)
46 KOG0426 Ubiquitin-protein liga 51.4 13 0.00027 28.8 2.2 22 61-82 54-75 (165)
47 COG1942 Uncharacterized protei 39.0 72 0.0016 21.7 4.2 34 75-108 1-35 (69)
48 KOG0897 Predicted ubiquitin-co 34.3 42 0.00091 25.3 2.6 23 60-82 12-34 (122)
49 PF09606 Med15: ARC105 or Med1 32.9 14 0.00031 36.8 0.0 56 63-122 718-774 (799)
50 smart00187 INB Integrin beta s 26.0 4E+02 0.0087 24.8 8.0 57 37-104 73-129 (423)
51 PRK04217 hypothetical protein; 23.2 3.2E+02 0.0069 20.3 6.3 58 71-128 28-92 (110)
52 PF02845 CUE: CUE domain; Int 21.2 80 0.0017 18.8 1.8 13 10-22 3-15 (42)
53 PF06113 BRE: Brain and reprod 20.9 5.9E+02 0.013 22.9 7.9 71 37-122 53-124 (333)
54 PTZ00397 macrophage migration 20.2 1.5E+02 0.0033 21.7 3.5 36 76-111 2-37 (116)
No 1
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=100.00 E-value=3.8e-42 Score=279.38 Aligned_cols=193 Identities=45% Similarity=0.633 Sum_probs=160.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeE
Q 027704 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV 80 (220)
Q Consensus 1 m~d~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i 80 (220)
|+.+ |+|++|+|||+|||||+|..+... .+..|+|.|....+..++ ....+.|.|++|++||+.+|.+.+
T Consensus 1 Ms~~-EeQe~E~EaLeSIY~de~~~i~~~------~~~~f~v~iq~e~~e~d~---~~~~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 1 MSQY-EEQEEELEALESIYPDEFKHINSE------DPPIFEVTIQYEEGENDE---PKGSFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred CCcH-HHHHHHHHHHHHhccchhhhhhcc------CCccceeeeecccccCCC---ccccEEEEEEccCCCCCCCcceec
Confidence 5556 999999999999999999555442 345599999876554322 122899999999999999999999
Q ss_pred ecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhccccc--cCccchhhhhhcccCCCCCccCHHHH
Q 027704 81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGI--DNTGEEELEKDEVIVPHGEPVTVETF 158 (220)
Q Consensus 81 ~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~~~~~~--~e~~~~~~e~~e~~~~~gt~vT~e~f 158 (220)
....++....+..|+..|...+++|+||+|||+||+.+|++|.+++++.... .+.+.++++++++.+|+|||||.++|
T Consensus 71 ~~~~~~~~~~i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e~~~q~~~~e~~e~~~~~~ee~e~~kfhgt~VT~esf 150 (215)
T KOG4018|consen 71 FENENLEDAEIEGILEKLQQEAEENLGMAMIFTLVSSAKEELNEIVEQQKAAEQREQEAREAEEEERKKFHGTPVTLESF 150 (215)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCceehhhh
Confidence 9899999999999999999999999999999999999999999999886655 22345677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCccccccCCCCCCCChHHHhhcCCCCCccc
Q 027704 159 LAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQ 206 (220)
Q Consensus 159 ~~Wk~kf~~e~~~~~~~~~~~~~~~~~~~~~ltGrqlfe~~~~~~~~~ 206 (220)
..||.+|.+++...+++.++. .+...+++||||+|+.|...++++
T Consensus 151 l~Wk~~fe~el~~~~~k~~~~---~~~~~~k~tgRQ~f~~d~~~~~~~ 195 (215)
T KOG4018|consen 151 LEWKLKFEEELLQIKAKVKKR---LQALAKKLTGRQLFETDHKGDRSD 195 (215)
T ss_pred HHHHHhhhhhhhhhhhhhhhH---HHHHhhhHHHHHHHHhcccCChhh
Confidence 999999999986665554322 345568999999999998866665
No 2
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=99.88 E-value=4.8e-22 Score=147.71 Aligned_cols=106 Identities=39% Similarity=0.563 Sum_probs=90.6
Q ss_pred HHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecCCCCCHHh
Q 027704 11 EIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGD 90 (220)
Q Consensus 11 ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~ 90 (220)
|++||+|||++++..+++.. ....|+|++.+..+. .....+++.|.|.+|++||+.+|.|.+.+..||+...
T Consensus 1 EieaL~sIy~~~~~~~~~~~-----~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~ 72 (107)
T smart00591 1 ELEALESIYPEDFEVIDEDA-----RIPEITIKLSPSSDE---GEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQ 72 (107)
T ss_pred ChHHHHhhccceeEEecCCC-----CccEEEEEEecCCCC---CCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHH
Confidence 79999999999998887531 113788888765431 1134688999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 027704 91 LKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE 124 (220)
Q Consensus 91 ~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~ 124 (220)
+..|.+.|...++++.|++|||++++++|++|.+
T Consensus 73 ~~~l~~~l~~~~~e~~g~~~if~~v~~~~e~l~~ 106 (107)
T smart00591 73 LAELLKKLEEIAEENLGEVMIFELVEKLQEFLSE 106 (107)
T ss_pred HHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999965
No 3
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=99.87 E-value=1.3e-21 Score=146.50 Aligned_cols=112 Identities=30% Similarity=0.451 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 3 DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 3 d~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
++.++|++|++||+|||++++..... ..+..|++++.+.... ......+.+.|+|++|++||.++|.|.|.+
T Consensus 1 e~~e~~~~EieaL~sIy~~~~~~~~~------~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 1 ECEEQQEEEIEALQSIYPDDFIEIES------KSPPSLEVKLDESSSS--FESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHSSSSESSSTS------SSSEEEEEEE--CEEC--CTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcccccc------CCCCceeeeecccccc--cccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 47899999999999999999822222 1346788888431111 112346899999999999998899999998
Q ss_pred CCCCCHHhHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHH
Q 027704 83 LRGIQAGDLKILKEKLEQEASENL-GMAMIYTLVTSAKEWL 122 (220)
Q Consensus 83 ~~~L~~~~~~~L~~~L~~~~ee~~-G~~mIf~lv~~lqE~l 122 (220)
..++.......|.+.|...++++. |++|||++++|+|++|
T Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~ 113 (113)
T PF05773_consen 73 PKNSRNEQIEKLNKELEQIAEENRQGEPCIFQIIEWLQENL 113 (113)
T ss_dssp ESSSHCHHHHHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence 777776899999999999999999 9999999999999986
No 4
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=99.51 E-value=3.9e-14 Score=120.80 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=83.9
Q ss_pred HHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecCCCCCHHh
Q 027704 11 EIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGD 90 (220)
Q Consensus 11 ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~ 90 (220)
|.+.+++||.|++.+.....++ ......+.+-|....++++ ..+.|+|.++.|++||.+.|.|+|.+++||++.+
T Consensus 2 e~~~~e~~~ld~i~~~~~~~s~---~~~~i~~t~hpit~eedes--qyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~ 76 (368)
T KOG4445|consen 2 ESADGEIEALDSIWDGVHVESK---LEASIRYTKHPITSEEDES--QYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPE 76 (368)
T ss_pred cccchhhHhhhhHhhccCCCCC---Chhhheeeecccccccccc--eeEEEEEEEecCCCCCCcCCceEecCCCCCCcHH
Confidence 4556667777665443321111 1223344444444433333 3588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 027704 91 LKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 125 (220)
Q Consensus 91 ~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~ 125 (220)
+..|+..+++++++++||||||.|++.++|+|.+.
T Consensus 77 ~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~n 111 (368)
T KOG4445|consen 77 FREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTEN 111 (368)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccC
Confidence 99999999999999999999999999999999765
No 5
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-10 Score=102.73 Aligned_cols=120 Identities=23% Similarity=0.263 Sum_probs=83.6
Q ss_pred CCC-hHHHHHHHHHHHHhhcCCc-ceecccCcCCCC----CCCceEEEEeeCCCCCCCc---------CCCCCeEEEEEE
Q 027704 1 MTD-HVQEQEMEIEALEAILMDE-FKEIHSGESGLN----TSNQCFQVTLSPQDDEADE---------STMPPVELALIF 65 (220)
Q Consensus 1 m~d-~~Eeq~~ElEaL~SIY~de-~~~~~~~~~~~~----~~~~~f~I~i~~~~~~~~~---------~~~~~~~l~L~~ 65 (220)
|.+ ..+.|++||+||+||||+. |...+....+.- ..+..|.+.+.+..+...+ .....+++.|.|
T Consensus 1 ~~~dn~~~qedEL~AL~siy~e~~~~~~~~~~~~~~~ir~ni~v~f~~~~~~~vnie~~s~~~~~f~~~~~~lPpivlkf 80 (445)
T KOG1814|consen 1 MSEDNRELQEDELEALESIYPENEFRKVSYWEDGEFEIRLNIEVNFEILYSPKVNIEGTSDSMDLFSLPLDHLPPIVLKF 80 (445)
T ss_pred CcchHHHHHHHHHHHHHHhccccccccccccccccceeEeeeeccceeecccccccccccccccccccccccCCCeeeee
Confidence 444 4899999999999999977 555443211100 0123344433333221111 123567899999
Q ss_pred EeCCCCCCC-CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhh
Q 027704 66 SHTEKYPDE-PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYS 127 (220)
Q Consensus 66 ~~p~~YP~~-~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~ 127 (220)
.||++||++ ||.+.|. ..||+.+++..|... +..|....|.|.+++++-...+++
T Consensus 81 ~LP~~YPs~spP~f~l~-s~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~l~ 136 (445)
T KOG1814|consen 81 HLPNDYPSVSPPKFELK-SYWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISILN 136 (445)
T ss_pred ecCCccccCCCCceeee-hcccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHHHH
Confidence 999999998 8888888 699999998887766 677899999999999987666654
No 6
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.2e-11 Score=121.95 Aligned_cols=116 Identities=26% Similarity=0.376 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 4 HVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 4 ~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
+.+.|.+|+|||.|||+++|+.+...- +|+ ...+-|.+... .....+.|+|.+++.||..+|.+.+...
T Consensus 6 ~~eiQ~~e~ea~k~i~~~d~e~l~~r~-~w~--~~i~l~~l~s~--------~~~~~~~lh~~~~~~yp~~kp~i~lk~~ 74 (1351)
T KOG1035|consen 6 NYEIQENELEALKAIYMDDFEELKARW-AWV--CHILLIALRSC--------SLKLSGRLHVKCKRKYPYSKPEIKLKDH 74 (1351)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHH-hhh--hhhhhhhhhhh--------hHHHhhHhhhhhccccCCCCcccccccc
Confidence 789999999999999999999886643 554 23343444322 1246789999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhccc
Q 027704 84 RGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDA 130 (220)
Q Consensus 84 ~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~~~~ 130 (220)
.|+++.++..|...|..+++...|++|||.|...+||+|.++...+.
T Consensus 75 ~~~~d~~i~~L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~~~~~ 121 (1351)
T KOG1035|consen 75 QGVSDEDIELLSNELTALAKTLRGEVMIAELASIVQEFLKDHQDRPS 121 (1351)
T ss_pred ccchHHHHHHHHHHHHHhhccccccEEeeeHhhhhHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999988765543
No 7
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.06 E-value=3.2e-06 Score=72.55 Aligned_cols=53 Identities=34% Similarity=0.434 Sum_probs=39.2
Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHccCccccccCCCCCCCChHHHhhcCCC
Q 027704 147 VPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRA 201 (220)
Q Consensus 147 ~~~gt~vT~e~f~~Wk~kf~~e~~~~~~~~~~~~~~~~~~~~~ltGrqlfe~~~~ 201 (220)
.+.-||+|.++|.+|+.+..+|..+..++....+ +..++.+ ||||+||+.+..
T Consensus 223 ~~nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~~-k~~gk~~-~sGRElF~~~~d 275 (343)
T KOG1763|consen 223 GPNLTPLTEETFKAWKKRKIRERKEKLAAEKAER-KKVGKSN-MSGRELFESNAD 275 (343)
T ss_pred CCCCccccHHHHHHHHHhhHHHHHHHHHHHHHHh-hhhccCC-CchHHHHhhchh
Confidence 3468999999999999999888877655443222 2223334 999999999975
No 8
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.05 E-value=0.00031 Score=58.90 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=39.8
Q ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHccCccccccCCCCCCCChH-HHhhcCCC------CCccccccccccc
Q 027704 148 PHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGR-QWFESGRA------TAVSQVSLCLFRC 214 (220)
Q Consensus 148 ~~gt~vT~e~f~~Wk~kf~~e~~~~~~~~~~~~~~~~~~~~~ltGr-qlfe~~~~------~~~~~~~~~~~~~ 214 (220)
..-||+|.++|..|+.-...-+...+++....+ +..++. -+||+ ++||.+.. ..+++||++.|+.
T Consensus 209 ~~LTP~TeenFk~Wkd~~~~r~lkq~ee~~s~R-k~~gr~-~~~k~~e~FEt~~d~~~ddv~~ge~wD~te~~~ 280 (299)
T COG5252 209 EKLTPLTEENFKEWKDGRRLRILKQKEEKESAR-KVKGRA-TGTKGVELFETRRDLFKDDVEAGEEWDYTERCY 280 (299)
T ss_pred CcCCcccHHHHHHhccchHHHHHHHHHHHHhcc-cchhhh-hhccchhhhhcccccccccccccccccHHHHHH
Confidence 358999999999999754433222211111110 111222 25555 99999866 5788999999873
No 9
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.78 E-value=0.021 Score=55.21 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=62.3
Q ss_pred CceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCC-CCceeEecCCCCCHHhHHHHHHHHHHHHHHhc--CChhHHH
Q 027704 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDE-PPLLNVKSLRGIQAGDLKILKEKLEQEASENL--GMAMIYT 113 (220)
Q Consensus 37 ~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~-~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~--G~~mIf~ 113 (220)
.++++|.+......+ +..+.+.|+|.||..||.. +|.|.+..+..+...+...|.+.|..++.... |.-|+=.
T Consensus 448 ~Rsctvsln~p~~~~----d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~~l~~L~~i~~q~v~s~~yClep 523 (1081)
T KOG0309|consen 448 DRSCTVSLNCPNHRV----DDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAKLLKILKDIALQKVKSGQYCLEP 523 (1081)
T ss_pred cceEEEEecCCCCcc----ccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 367888887543322 1247799999999999997 99999999999999999999999999987764 7666655
Q ss_pred HHHHHHH
Q 027704 114 LVTSAKE 120 (220)
Q Consensus 114 lv~~lqE 120 (220)
++..|--
T Consensus 524 Clr~l~g 530 (1081)
T KOG0309|consen 524 CLRQLVG 530 (1081)
T ss_pred HHHHHhc
Confidence 5555554
No 10
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=94.62 E-value=0.35 Score=38.31 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
-.-..|+..|+.--+..+.+..... .-..+.+.|....+ .+.....+.+.|.+|++||..||.+.+..
T Consensus 5 kRl~~E~~~l~~~~~~~i~~~~~~~-----d~~~w~~~i~GP~~----tpY~gg~f~~~i~~p~~YP~~pP~v~F~t 72 (152)
T PTZ00390 5 KRIEKETQNLANDPPPGIKAEPDPG-----NYRHFKILMEGPDG----TPYEGGYYKLELFLPEQYPMEPPKVRFLT 72 (152)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCC-----CccEEEEEEEcCCC----CCCcCcEEEEEEECccccCCCCCEEEEec
Confidence 3455678888765444444332111 22456666663222 12344678899999999999999999764
No 11
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=1.1 Score=35.96 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=63.9
Q ss_pred HHHHHHhhcCCc-ceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC---CCC
Q 027704 11 EIEALEAILMDE-FKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL---RGI 86 (220)
Q Consensus 11 ElEaL~SIY~de-~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~---~~L 86 (220)
|.++.+-|-.+- .+++.++ -..|-|++....+ ++.....-+++|.+|..||-.+|.|-+... .++
T Consensus 9 d~Dv~KL~~s~yeV~~ind~-------m~ef~V~f~GP~d----s~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 9 DTDVMKLLMSDYEVTIINDG-------MQEFYVKFHGPKD----SPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred hhHHHHHHhcCCeEEEecCc-------ccEEEEEeeCCCC----CcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 444544444332 4455442 3567777764332 223445678999999999999999986542 444
Q ss_pred CHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhc
Q 027704 87 QAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQ 128 (220)
Q Consensus 87 ~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~~ 128 (220)
+..-=...+..|++.| .-+|+|+.-..-+|-+.+.-
T Consensus 78 De~SGsVCLDViNQtW------Sp~yDL~NIfetfLPQLL~Y 113 (189)
T KOG0416|consen 78 DEASGSVCLDVINQTW------SPLYDLVNIFETFLPQLLRY 113 (189)
T ss_pred hhccCccHHHHHhhhh------hHHHHHHHHHHHHhHHHhcC
Confidence 4433344567777776 34688888888888877643
No 12
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=93.46 E-value=0.58 Score=36.75 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
.-..|+..|+.--+..+...... ..-..+.+.|....+ .......+.+.|.+|++||..||.+.+..
T Consensus 5 Rl~kE~~~l~~~~~~~~~~~~~~-----~nl~~w~~~i~GP~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t 71 (147)
T PLN00172 5 RIQKEHKDLLKDPPSNCSAGPSD-----ENLFRWTASIIGPSD----SPYAGGVFFLSILFPPDYPFKPPKVQFTT 71 (147)
T ss_pred HHHHHHHHHHhCCCCCeEEEECC-----CChheEEEEEECCCC----CCCCCCEEEEEEECCcccCCCCCEEEEec
Confidence 44567777765333333222111 122456666653222 12334578899999999999999999864
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=93.38 E-value=0.6 Score=36.04 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC---CC
Q 027704 9 EMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL---RG 85 (220)
Q Consensus 9 ~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~---~~ 85 (220)
..|+..|+.--+..+.+.-... +...+.+.|.+..+. ......+.+.|.+|++||..||.+.+... .+
T Consensus 5 ~~E~~~l~~~~~~~~~v~~~~~-----~~~~w~~~i~g~~~t----~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~Hpn 75 (141)
T cd00195 5 QKELKDLKKDPPSGISAEPVEE-----NLLEWHGTIRGPPDT----PYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPN 75 (141)
T ss_pred HHHHHHHHhCCCCCeEEEECCC-----ChhEEEEEEecCCCC----CccCCEEEEEEECCCccCCCCCeEEEeCCcccCC
Confidence 3566666654444443322110 224556665543111 12335688999999999999999998632 23
Q ss_pred CCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 027704 86 IQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLS 123 (220)
Q Consensus 86 L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~ 123 (220)
+.. .-......|... .+..... |.+++..|+..|.
T Consensus 76 V~~-~G~icl~~l~~~-~W~p~~~-l~~il~~i~~~l~ 110 (141)
T cd00195 76 VDE-NGKICLSILKTH-GWSPAYT-LRTVLLSLQSLLN 110 (141)
T ss_pred CCC-CCCCchhhcCCC-CcCCcCc-HHHHHHHHHHHHh
Confidence 331 111111222211 1222322 7777777777765
No 14
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=92.26 E-value=0.86 Score=35.09 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 9 EMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 9 ~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..|+..|+.--+..+...-... .....+.+.|.+..+ .......+.+.|.+|++||..||.+.+..
T Consensus 3 ~~E~~~l~~~~~~~~~~~~~~~----~~~~~w~~~i~gp~~----t~y~gg~f~~~i~~p~~YP~~pP~v~f~t 68 (140)
T PF00179_consen 3 QKELKELQKNPPPGISVQPSED----DNLFEWHVTIFGPPG----TPYEGGIFKFRISFPPDYPFSPPKVRFLT 68 (140)
T ss_dssp HHHHHHHHHSHTTTEEEEEEST----TETTEEEEEEEBETT----STTTTSEEEEEEEETTTTTTS--EEEESS
T ss_pred HHHHHHHhhCCCCCEEEEECCC----CChheEEEEEeccCc----cceeccccccccccccccccccccccccc
Confidence 3566666654444443321110 123556666654211 12345678999999999999999999875
No 15
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=91.50 E-value=1.6 Score=33.78 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 9 EMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 9 ~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..|+..|+.--+..+.+..... .....+.+.+....+ .......+.+.|.+|++||..||.+.+...
T Consensus 4 ~~E~~~~~~~~~~~~~v~~~~~----~~~~~w~~~i~gp~~----~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~ 70 (145)
T smart00212 4 LKELKELLKDPPPGISAYPVDE----DNLLEWTGTIVGPPG----TPYEGGIFKLTIEFPPDYPFKPPKVKFITK 70 (145)
T ss_pred HHHHHHHHhCCCCCeEEEECCC----CChheEEEEEEcCCC----CCcCCcEEEEEEECCcccCCCCCEEEEeCC
Confidence 3466666644444444321110 022455555552111 113345689999999999999999998653
No 16
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=2 Score=34.18 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 5 ~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
...-..|++.|+.=-+..+...-...+ .-..+.+.|....+ .......+.|.+.||++||..||.|.+...
T Consensus 7 ~~RL~kE~~~l~~~~~~~~~a~p~~d~----~l~~w~~~i~GP~d----tpYegg~f~~~l~fP~~YP~~PPkv~F~t~ 77 (153)
T COG5078 7 LKRLLKELKKLQKDPPPGISAGPVDDD----NLFHWEATITGPPD----TPYEGGIFKLTLEFPEDYPFKPPKVRFTTK 77 (153)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCC----cceeEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCCeeeeccC
Confidence 445567788777544444332211100 11234444443221 234557789999999999999999998764
No 17
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.68 Score=35.70 Aligned_cols=26 Identities=31% Similarity=0.568 Sum_probs=22.5
Q ss_pred CCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 57 PPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 57 ~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
....+.|.+.|+++||..||.+.+.+
T Consensus 49 e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 49 EGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CCceEEEEEEcccccCCCCCeeEeee
Confidence 34678899999999999999999775
No 18
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=0.6 Score=36.70 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=31.0
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..|+..|....+ ++.....+.|.+.+|++||-.||.|.+..
T Consensus 31 ~~w~a~I~GP~~----SpYEgG~F~l~I~~p~~YP~~PPkV~F~T 71 (148)
T KOG0417|consen 31 FHWQATILGPPG----SPYEGGVFFLEIHFPEDYPFKPPKVRFLT 71 (148)
T ss_pred eeEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCCceEeec
Confidence 457777764332 33556779999999999999999999763
No 19
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.51 Score=38.50 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=38.2
Q ss_pred CCCeEEEEEEEeCCCCCCCCCceeEec---CCCCCHHhHHHHHHHHHHHHHHh
Q 027704 56 MPPVELALIFSHTEKYPDEPPLLNVKS---LRGIQAGDLKILKEKLEQEASEN 105 (220)
Q Consensus 56 ~~~~~l~L~~~~p~~YP~~~P~i~i~~---~~~L~~~~~~~L~~~L~~~~ee~ 105 (220)
...-.+.|.+.+|.+||..||.+.... ..+++...-....+.|..+|.-.
T Consensus 50 YEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~s 102 (200)
T KOG0418|consen 50 YEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAAS 102 (200)
T ss_pred CCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchh
Confidence 445678999999999999999998764 34567666666667777777544
No 20
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=1.8 Score=34.91 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=41.5
Q ss_pred eEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC---CCCCHHhHHHHHHHHHHHHHHhcC
Q 027704 39 CFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKILKEKLEQEASENLG 107 (220)
Q Consensus 39 ~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~---~~L~~~~~~~L~~~L~~~~ee~~G 107 (220)
+|.+.|.|+.+= ...-.+.+.|..|+.||.+||.+..... ++++. +=+.....|.+-|.=.++
T Consensus 61 ~~elti~PdEGy-----Y~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~GnVCLnILRedW~P~ln 126 (184)
T KOG0420|consen 61 EFELTITPDEGY-----YQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DGNVCLNILREDWRPVLN 126 (184)
T ss_pred eEEEEEccCcce-----ecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cchHHHHHHHhcCccccc
Confidence 589999886441 2335688899999999999999986532 33332 223345566666655454
No 21
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=86.31 E-value=0.66 Score=36.26 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=17.1
Q ss_pred CeEEEEEEEeCCCCCCCCCceeEecCCC
Q 027704 58 PVELALIFSHTEKYPDEPPLLNVKSLRG 85 (220)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~i~~~~~ 85 (220)
...+.|.|..|.+||.++|.|.|-...|
T Consensus 74 kYEF~~eFdIP~tYP~t~pEi~lPeLdG 101 (161)
T PF08694_consen 74 KYEFDLEFDIPVTYPTTAPEIALPELDG 101 (161)
T ss_dssp EEEEEEEEE--TTTTTS----B-GGGTT
T ss_pred eEEEeeecCCCccCCCCCcceeccccCC
Confidence 3668999999999999999999876544
No 22
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=4.1 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=30.6
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEe
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVK 81 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~ 81 (220)
..++..|-|+.. +.....+.|.+.+|.+||-.||.|.+.
T Consensus 33 l~wt~llipd~p-----pY~kgaF~l~I~fp~eYPFKPP~i~f~ 71 (153)
T KOG0422|consen 33 LKWTGLLIPDKP-----PYNKGAFRLEIDFPVEYPFKPPKIKFK 71 (153)
T ss_pred eeEEeEecCCCC-----CccCcceEEEeeCCCCCCCCCCeeeee
Confidence 567777766532 245677999999999999999999876
No 23
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.96 E-value=3.4 Score=32.35 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=32.0
Q ss_pred CeEEEEEEEeCCCCCCCCCceeEecCCCCCHHhH--HHHHHHHHHHHH
Q 027704 58 PVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDL--KILKEKLEQEAS 103 (220)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~~--~~L~~~L~~~~e 103 (220)
.....|...||.+||-.||.|.+..+-+-+.-++ ...++.|.+.|.
T Consensus 75 gl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWS 122 (175)
T KOG0421|consen 75 GLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWS 122 (175)
T ss_pred CcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHH
Confidence 4667888899999999999999886654443322 234566666653
No 24
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.59 E-value=3.2 Score=33.03 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCeEEEEEEEeCCCCCCCCCceeEecCC
Q 027704 57 PPVELALIFSHTEKYPDEPPLLNVKSLR 84 (220)
Q Consensus 57 ~~~~l~L~~~~p~~YP~~~P~i~i~~~~ 84 (220)
..--+.-+..||.+||..||.+.+.+.-
T Consensus 51 eGG~FkA~m~FP~dYP~sPP~~rF~s~m 78 (171)
T KOG0425|consen 51 EGGFFKAHMKFPQDYPLSPPTFRFTSKM 78 (171)
T ss_pred cCceeEEEEeCcccCCCCCCceeeehhh
Confidence 3456888999999999999999987643
No 25
>KOG3299 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=1.8 Score=35.86 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCCCCCc-eeEecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcc
Q 027704 70 KYPDEPPL-LNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQD 129 (220)
Q Consensus 70 ~YP~~~P~-i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~~~ 129 (220)
+||+++|. +++. ..++...+...|...+ .+-.+.|..|++.+++.+++.++....+.
T Consensus 2 ~yps~ap~i~e~~-~v~~~~~~~~~l~~a~--~~~s~~~~~l~~~~~~~~~~~~~~~~~~l 59 (206)
T KOG3299|consen 2 DYPSSAPTIKELV-GVEKELAKRKLLSNAL--VYISEIGDSLFLLWVEDPRDVLNKRASKL 59 (206)
T ss_pred CCCCCCCcHhHhh-hHHHHHHHHHhhhhhh--HHHHhhhhhhhhhhhccHHHHHHHhHhhc
Confidence 69998554 4453 3334444444455555 56667889999999999999998876554
No 26
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=16 Score=28.20 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCcceec-ccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 8 QEMEIEALEAILMDEFKEI-HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 8 q~~ElEaL~SIY~de~~~~-~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.+-|+-.++.==|..|..- ++ .-..+.|.+....+- -...-...|+|.||+.||-++|.+-+...
T Consensus 20 LqKEl~e~q~~pP~G~~~~v~d-------nlqqWii~v~Ga~GT----LYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 20 LQKELSEWQNNPPTGFKHRVTD-------NLQQWIIEVTGAPGT----LYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred HHHHHHHHhcCCCCcceeeccc-------chheeEEEEecCCce----eecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 3457777777666665432 22 124556665532211 01124578999999999999999887643
No 27
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=77.22 E-value=5.6 Score=26.00 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.+.+.-.+|.+.+++..|.+.|.+.+.+.+|.|
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p 35 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEVVSRIAKAP 35 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 37888887789999999999999999988888864
No 28
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=76.98 E-value=5.8 Score=25.66 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=30.3
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.+.|...+|.+.+++..|.+.|.....+.+|.|
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 37888887788999999999999999988888865
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=76.63 E-value=6.7 Score=29.72 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=20.8
Q ss_pred eEEEEEEEeCCCCCCCCCceeEecCC
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKSLR 84 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~~~ 84 (220)
..+-+.+.+|.+||..||.+.+....
T Consensus 48 y~iPi~Iwlp~~yP~~pP~v~v~pt~ 73 (121)
T PF05743_consen 48 YNIPICIWLPENYPYSPPIVYVRPTP 73 (121)
T ss_dssp EEEEEEEEE-TTTTTSSSEEEE-GCC
T ss_pred cceeEEEEEcccCCCCCCEEEEeCCC
Confidence 67888999999999999999997543
No 30
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.70 E-value=2.6 Score=32.61 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=19.8
Q ss_pred EEEEEEEeCCCCCCCCCceeEecC
Q 027704 60 ELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 60 ~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
--.|.|.|-++||+.||.+.+.+.
T Consensus 57 iysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 57 IYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred eeeEEEecCCCCCCCCceeEEEEE
Confidence 356888999999999999996543
No 31
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=74.61 E-value=7.6 Score=25.19 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=30.6
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCChh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAM 110 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~m 110 (220)
.|.+.|....|.+.++...|.+.|.+...+.+|.+-
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~ 36 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPP 36 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 388888877888999999999999998888888653
No 32
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=73.20 E-value=5.5 Score=30.55 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.8
Q ss_pred eEEEEEEEeCCCCCCCCCceeEecCC
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKSLR 84 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~~~ 84 (220)
..+.|.+.+|+.||..||.|.+....
T Consensus 36 ~~~~l~l~~p~~FP~~pp~v~l~d~~ 61 (133)
T PF14461_consen 36 GPFPLRLVFPDDFPYLPPRVYLEDPK 61 (133)
T ss_pred eEEEEEEEECCcccCcCCEEEecCcc
Confidence 56889999999999999999988654
No 33
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.03 E-value=7.9 Score=30.40 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 57 PPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 57 ~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
......|.+.||.+||..||.+.+..
T Consensus 54 EGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 54 EGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred cCceEEEEEeCCccCCCCCCccccCC
Confidence 34567899999999999999998764
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=71.78 E-value=6.8 Score=34.96 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCc-ceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecCC
Q 027704 7 EQEMEIEALEAILMDE-FKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLR 84 (220)
Q Consensus 7 eq~~ElEaL~SIY~de-~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~~ 84 (220)
.+.+=|+||-+.|+.. ++.-+.. -.. +.+-...+ ...+.+||.+|..+|...|.+++.+..
T Consensus 270 ~RrefI~al~~~fg~~vLE~D~~~-------~~k--~s~L~~~~--------~F~flvHi~Lp~~FP~~qP~ltlqS~y 331 (333)
T PF06113_consen 270 KRREFIEALLSHFGRPVLEYDAEF-------FRK--ISFLLESG--------DFTFLVHISLPIQFPKDQPSLTLQSVY 331 (333)
T ss_pred HHHHHHHHHHHhcCCcceeecccc-------cch--hhHHhhcC--------CeEEEEEEeccCCCCCcCCeEEEEeec
Confidence 3455689999999988 3332221 011 22222111 267899999999999999999998653
No 35
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=71.61 E-value=9.8 Score=24.68 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.5
Q ss_pred CceeEecC-CCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSL-RGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~-~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|.-. .|.+.++...|.+.|.+.+.+.+|.+
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~ 35 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETLGAN 35 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 66777766 78899999999999999988888865
No 36
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=69.65 E-value=12 Score=23.80 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=28.2
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|.-..|.+.++...|.+.|...+.+.+|.+
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~ 34 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEILGAP 34 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6777776677788999999999999888888754
No 37
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=69.02 E-value=9.1 Score=24.70 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.4
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|....|.+.+++..|.+.+...+.+.+|.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~ 34 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGIP 34 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6778877788889999999999999888887754
No 38
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=65.95 E-value=14 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.2
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.+.|.-..|.+.++...|.+.|.+...+.+|.|
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p 35 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEAISATLDVP 35 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 37888876678899999999999999888888855
No 39
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.42 E-value=22 Score=30.47 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCCCCCceeEec
Q 027704 62 ALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 62 ~L~~~~p~~YP~~~P~i~i~~ 82 (220)
.=+|.+|++||-.||.|-+..
T Consensus 60 HGRI~lPadYPmKPPs~iLLT 80 (314)
T KOG0428|consen 60 HGRIVLPADYPMKPPSIILLT 80 (314)
T ss_pred eeeEecCCCCCCCCCeEEEEc
Confidence 346789999999999987654
No 40
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.00 E-value=7.7 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=22.7
Q ss_pred CeEEEEEEEeCCCCCCCCCceeEecCCC
Q 027704 58 PVELALIFSHTEKYPDEPPLLNVKSLRG 85 (220)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~i~~~~~ 85 (220)
...+.+.|..|-+||.++|.|.+-...|
T Consensus 77 kyefdvefdipityp~tapeialpeldg 104 (167)
T KOG3357|consen 77 KYEFDVEFDIPITYPTTAPEIALPELDG 104 (167)
T ss_pred hheeeeeeccccccCCCCccccccccCc
Confidence 3567899999999999999998765443
No 41
>PF15594 Imm30: Immunity protein 30
Probab=57.89 E-value=27 Score=26.30 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=28.4
Q ss_pred HHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCc
Q 027704 12 IEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPL 77 (220)
Q Consensus 12 lEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~ 77 (220)
=++|.+||+......+. ....|.+.-. ...|.|+| +...+|..+|.
T Consensus 6 ~~~i~~~fg~~P~f~d~---------ei~~v~l~r~----------~~~l~i~~-~~~~~p~~~P~ 51 (124)
T PF15594_consen 6 PEKIISIFGEWPSFHDA---------EIFSVLLDRD----------GPRLSIHF-DTKEFPDNPPK 51 (124)
T ss_pred HHHHHHHhCCCCCccee---------EEEEEEEEcC----------CCEEEEEE-EECCCCCCCCc
Confidence 36899999876443322 3455666532 13677777 55678887665
No 42
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=11 Score=31.69 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCCCCCceeEecCC
Q 027704 62 ALIFSHTEKYPDEPPLLNVKSLR 84 (220)
Q Consensus 62 ~L~~~~p~~YP~~~P~i~i~~~~ 84 (220)
.=.+.||++||-.||.|....+.
T Consensus 55 hGkl~FP~eyP~KPPaI~MiTPN 77 (244)
T KOG0894|consen 55 HGKLIFPPEYPFKPPAITMITPN 77 (244)
T ss_pred eeEEeCCCCCCCCCCeeEEECCC
Confidence 34568899999999999976543
No 43
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=56.79 E-value=12 Score=38.26 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 57 PPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 57 ~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
...-+.+.|.||++||.+||.+..++.
T Consensus 896 ~~~~f~fd~~~~~~yp~~pp~~~~~s~ 922 (1101)
T KOG0895|consen 896 QDGLFFFDFQFPQDYPSSPPLVHYHSG 922 (1101)
T ss_pred ccceEEEEeecCCCCCCCCCceEeecC
Confidence 345678999999999999999998753
No 44
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=55.50 E-value=27 Score=24.28 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=28.7
Q ss_pred CCceeEecCCC-CCHHhHHHHHHHHHHHHHHhcCC
Q 027704 75 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGM 108 (220)
Q Consensus 75 ~P~i~i~~~~~-L~~~~~~~L~~~L~~~~ee~~G~ 108 (220)
.|.+.|.-..| .+.++...|-+.+.+.+.+.+|.
T Consensus 1 MP~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~ 35 (76)
T PRK01271 1 MPHIDIKCFPRELDEEQKAALAADITDVIIRHLNS 35 (76)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 37888887776 89999999999999998888874
No 45
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=54.26 E-value=13 Score=28.48 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.5
Q ss_pred CeEEEEEEEeCCCCCCCCCc
Q 027704 58 PVELALIFSHTEKYPDEPPL 77 (220)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~ 77 (220)
...+.+-|.+|++||.++|.
T Consensus 41 ~~~~dili~iP~gYP~~~~D 60 (122)
T PF14462_consen 41 HNEVDILILIPPGYPDAPLD 60 (122)
T ss_pred ccceEEEEECCCCCCCCCCC
Confidence 45688999999999998543
No 46
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.40 E-value=13 Score=28.80 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEEEEeCCCCCCCCCceeEec
Q 027704 61 LALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 61 l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
+--++.||.+||-.||.+.+.+
T Consensus 54 fpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 54 FPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred cceeeecCCCCCCCCCceeeec
Confidence 4456688999999999998875
No 47
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=39.03 E-value=72 Score=21.74 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=26.9
Q ss_pred CCceeEecCCC-CCHHhHHHHHHHHHHHHHHhcCC
Q 027704 75 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGM 108 (220)
Q Consensus 75 ~P~i~i~~~~~-L~~~~~~~L~~~L~~~~ee~~G~ 108 (220)
.|.+.|...+| ++..+...|-..+.+...+.+|.
T Consensus 1 MP~v~Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~ 35 (69)
T COG1942 1 MPFVNIKLFEGRLDEEQKAELAAEVTEVTVETLGK 35 (69)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 37788887765 77777889999998888888774
No 48
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=34.33 E-value=42 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEEEeCCCCCCCCCceeEec
Q 027704 60 ELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 60 ~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
.+.|.+.++.+||..||...+..
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~ 34 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVK 34 (122)
T ss_pred eeEeeeecccCCCCCCCcceeee
Confidence 46788999999999999998764
No 49
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=32.86 E-value=14 Score=36.81 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred EEEEeCCCCCCCCCceeEecCC-CCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 027704 63 LIFSHTEKYPDEPPLLNVKSLR-GIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWL 122 (220)
Q Consensus 63 L~~~~p~~YP~~~P~i~i~~~~-~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l 122 (220)
|.++.|.+||..+|.+.+.... .++. -+..|...|. +..+-+|=.|+|...|--|-
T Consensus 718 l~l~vP~~YP~~sp~~~~~~~~y~~~~-Fl~~v~~~~~---~Rl~~lP~~~svt~lL~tWe 774 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSVDRDEYDATP-FLQDVQNALT---SRLAKLPDKHSVTQLLNTWE 774 (799)
T ss_dssp -------------------------------------------------------------
T ss_pred eeEeCCCCCCccCCcCcccHHHhccCh-HHHHHHHHHH---HHHHhCCCceeHHHHHHHHH
Confidence 5667899999999998875221 1111 1111333332 22334466666666665554
No 50
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=25.98 E-value=4e+02 Score=24.78 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=37.3
Q ss_pred CceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecCCCCCHHhHHHHHHHHHHHHHH
Q 027704 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASE 104 (220)
Q Consensus 37 ~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee 104 (220)
|..+.+++.|. .+..+.|.|.-+.+||=. .+.|-...+-...++..|+.....++++
T Consensus 73 PQ~v~l~LRpG---------~~~~f~~~~~~a~~yPvD--LYyLMDlS~SM~ddl~~lk~lg~~L~~~ 129 (423)
T smart00187 73 PQRVRLKLRPG---------EPQNFTLTVRQAEDYPVD--LYYLMDLSYSMKDDLDNLKSLGDDLARE 129 (423)
T ss_pred cceEEEEeccC---------CcEEEEEEEEecccCccc--eEEEEeCCccHHHHHHHHHHHHHHHHHH
Confidence 56777777764 247889999999999953 2444444554556777776666555444
No 51
>PRK04217 hypothetical protein; Provisional
Probab=23.24 E-value=3.2e+02 Score=20.32 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCCCCceeEecCCCCCHHhHHHHHHH------HHHHHHHh-cCChhHHHHHHHHHHHHHHhhhc
Q 027704 71 YPDEPPLLNVKSLRGIQAGDLKILKEK------LEQEASEN-LGMAMIYTLVTSAKEWLSERYSQ 128 (220)
Q Consensus 71 YP~~~P~i~i~~~~~L~~~~~~~L~~~------L~~~~ee~-~G~~mIf~lv~~lqE~l~~~~~~ 128 (220)
||.-+|...=.....|+.++...+... +.++|+.. +...-|+..+..+...|.+.+..
T Consensus 28 ~~~~~~~~~~~p~~~Lt~eereai~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~ 92 (110)
T PRK04217 28 YPAIPPVGPPKPPIFMTYEEFEALRLVDYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVE 92 (110)
T ss_pred eCCCCCccCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 666665554444566887776544322 23344332 34455888888777777776543
No 52
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=21.21 E-value=80 Score=18.80 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHhhcCCc
Q 027704 10 MEIEALEAILMDE 22 (220)
Q Consensus 10 ~ElEaL~SIY~de 22 (220)
+.+..|++|||+-
T Consensus 3 ~~v~~L~~mFP~~ 15 (42)
T PF02845_consen 3 EMVQQLQEMFPDL 15 (42)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHHHHHHHCCCC
Confidence 5688999999863
No 53
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=20.94 E-value=5.9e+02 Score=22.89 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=46.1
Q ss_pred CceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecCCCCCHHhHHHHHHHHHHHHHHhc-CChhHHHHH
Q 027704 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENL-GMAMIYTLV 115 (220)
Q Consensus 37 ~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~-G~~mIf~lv 115 (220)
..+|++.|+--. -.+.-.|-|-..||..||.|-+....+...+ .+ .+...++++. .-.++..++
T Consensus 53 ~DRF~l~IPy~~----------~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd-~s----~l~~L~~Wd~~dp~~Ll~li 117 (333)
T PF06113_consen 53 CDRFKLLIPYCG----------EYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD-PS----KLPSLVNWDPSDPNCLLNLI 117 (333)
T ss_pred cceEEEEeeccC----------CEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC-hh----hcchhhcCCCCCchHHHHHH
Confidence 358888887531 2578888899999999999998744443322 12 2344556665 445677776
Q ss_pred HHHHHHH
Q 027704 116 TSAKEWL 122 (220)
Q Consensus 116 ~~lqE~l 122 (220)
..+....
T Consensus 118 ~EL~~~Y 124 (333)
T PF06113_consen 118 SELRQLY 124 (333)
T ss_pred HHHHHHH
Confidence 6666543
No 54
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.18 E-value=1.5e+02 Score=21.70 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=27.7
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCChhH
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMI 111 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mI 111 (220)
|.+.|....+.+..+...|.+.+.+.+.+.+|-|==
T Consensus 2 P~~~i~tn~~~~~~~~~~~~~~~~~~l~~~lgkPe~ 37 (116)
T PTZ00397 2 PCCQVSTNVNATDDQADAALSDIENAIADVLGKPLS 37 (116)
T ss_pred CeEEEEecCCCccccHHHHHHHHHHHHHHHhCCChH
Confidence 778887666677777888999998888888876533
Done!