Query 027704
Match_columns 220
No_of_seqs 207 out of 970
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 23:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebm_A RWD domain-containing p 100.0 4.3E-30 1.5E-34 197.0 14.9 120 1-131 8-127 (128)
2 2yz0_A Serine/threonine-protei 100.0 1.3E-29 4.6E-34 196.7 13.8 120 1-125 8-128 (138)
3 1ukx_A GCN2, GCN2 EIF2alpha ki 100.0 1.3E-28 4.4E-33 190.8 14.5 122 1-126 8-130 (137)
4 2ebk_A RWD domain-containing p 99.9 6.7E-27 2.3E-31 179.3 12.2 119 2-130 6-126 (128)
5 2day_A Ring finger protein 25; 99.9 1E-26 3.4E-31 178.2 12.0 118 3-125 8-125 (128)
6 2dax_A Protein C21ORF6; RWD do 99.9 1.5E-24 5E-29 171.1 13.3 123 1-129 6-143 (152)
7 2daw_A RWD domain containing p 99.9 1.7E-23 5.7E-28 165.4 11.4 120 2-130 13-146 (154)
8 4a9a_C Translation machinery-a 98.9 2.9E-10 1E-14 86.9 2.8 58 149-214 34-107 (142)
9 2a7l_A Hypothetical ubiquitin- 95.9 0.05 1.7E-06 41.2 8.8 74 1-82 20-94 (136)
10 2fo3_A Ubiquitin-conjugating e 94.7 0.18 6E-06 37.4 8.5 68 6-82 9-76 (125)
11 2h2y_A Ubiquitin-conjugating e 94.7 0.31 1.1E-05 36.6 9.9 69 5-82 22-90 (136)
12 1zdn_A Ubiquitin-conjugating e 94.6 0.25 8.5E-06 38.1 9.3 68 7-83 17-84 (158)
13 2ayv_A Ubiquitin-conjugating e 94.4 0.28 9.6E-06 38.2 9.3 68 7-83 25-92 (166)
14 2aak_A UBC1, ubiquitin conjuga 94.2 0.27 9.2E-06 37.6 8.8 69 6-83 7-75 (152)
15 1wzv_A Ubiquitin-conjugating e 94.2 0.26 9E-06 37.8 8.7 70 5-83 6-75 (155)
16 2bep_A Ubiquitin-conjugating e 94.2 0.41 1.4E-05 36.8 9.8 68 6-82 11-81 (159)
17 2e2c_A Ubiquitin conjugating e 94.1 0.5 1.7E-05 36.2 10.1 70 5-83 11-80 (156)
18 2c2v_B Ubiquitin-conjugating e 94.1 0.34 1.2E-05 37.2 9.0 68 7-83 9-76 (154)
19 2c4o_A Ubiquitin-conjugating e 94.0 0.37 1.3E-05 37.5 9.1 68 7-83 23-90 (165)
20 1ayz_A UBC2, ubiquitin-conjuga 93.9 0.34 1.2E-05 37.8 8.8 69 6-83 7-75 (169)
21 1z2u_A Ubiquitin-conjugating e 93.7 0.31 1E-05 37.2 8.2 68 7-83 8-75 (150)
22 1jat_A Ubiquitin-conjugating e 93.7 0.34 1.2E-05 37.1 8.4 68 7-83 9-76 (155)
23 1yh2_A HSPC150 protein similar 93.6 0.48 1.6E-05 36.9 9.3 68 7-83 8-75 (169)
24 4gpr_A Ubiquitin-conjugating e 93.6 0.51 1.7E-05 36.0 9.2 68 7-83 8-75 (151)
25 2r0j_A Ubiquitin carrier prote 93.5 0.36 1.2E-05 36.7 8.2 67 8-83 6-72 (149)
26 3bzh_A Ubiquitin-conjugating e 93.4 0.32 1.1E-05 38.9 8.0 68 7-83 52-119 (194)
27 1yrv_A Ubiquitin-conjugating l 93.3 0.53 1.8E-05 36.7 9.0 68 7-83 27-94 (169)
28 3rz3_A Ubiquitin-conjugating e 93.3 0.62 2.1E-05 36.7 9.5 70 6-83 10-79 (183)
29 2pwq_A Ubiquitin conjugating e 93.1 0.54 1.8E-05 38.2 9.1 105 7-123 27-134 (216)
30 3h8k_A Ubiquitin-conjugating e 92.8 0.95 3.3E-05 34.8 9.8 69 7-83 7-75 (164)
31 2awf_A Ubiquitin-conjugating e 92.7 0.69 2.3E-05 36.1 8.9 68 8-83 22-89 (172)
32 1fxt_A Ubiquitin-conjugating e 92.7 0.58 2E-05 35.5 8.3 68 7-82 5-72 (149)
33 3fn1_B NEDD8-conjugating enzym 92.4 0.55 1.9E-05 36.4 8.0 68 7-83 18-85 (167)
34 2ucz_A UBC7, ubiquitin conjuga 92.4 0.98 3.4E-05 34.8 9.3 69 7-83 8-76 (165)
35 1i7k_A Ubiquitin-conjugating e 92.0 0.63 2.1E-05 36.7 7.9 68 7-83 34-101 (179)
36 2f4w_A Ubiquitin-conjugating e 91.9 0.67 2.3E-05 36.7 8.0 68 7-83 18-85 (187)
37 3o2u_A NEDD8-conjugating enzym 91.8 0.41 1.4E-05 38.1 6.6 40 39-83 65-104 (190)
38 2onu_A Ubiquitin-conjugating e 91.7 0.37 1.3E-05 36.9 6.1 41 38-82 29-69 (152)
39 1c4z_D UBCH7, ubiquitin conjug 91.5 0.31 1.1E-05 37.3 5.5 41 38-83 33-73 (154)
40 3kpa_A Probable ubiquitin fold 91.4 0.12 4.2E-06 39.8 2.9 25 59-83 85-109 (168)
41 1y8x_A Ubiquitin-conjugating e 91.3 0.33 1.1E-05 37.5 5.4 41 38-83 35-75 (160)
42 1jat_B Ubiquitin-conjugating e 91.2 0.43 1.5E-05 35.9 5.9 69 7-83 10-81 (138)
43 2q0v_A Ubiquitin-conjugating e 91.2 0.42 1.4E-05 36.8 5.9 69 7-83 25-96 (156)
44 3k9o_A Ubiquitin-conjugating e 91.2 1.4 4.7E-05 35.2 9.2 41 38-82 38-78 (201)
45 2z5d_A Ubiquitin-conjugating e 90.8 0.46 1.6E-05 37.5 5.9 65 6-83 28-92 (179)
46 2nvu_C NEDD8-conjugating enzym 90.7 0.29 1E-05 38.6 4.7 41 38-83 55-95 (180)
47 2y9m_A Ubiquitin-conjugating e 90.7 0.48 1.7E-05 37.0 5.9 41 38-82 48-88 (172)
48 2grr_A Ubiquitin-conjugating e 90.7 0.49 1.7E-05 36.5 5.9 73 6-83 10-83 (161)
49 2gjd_A Ubiquitin-conjugating e 90.7 0.44 1.5E-05 36.6 5.6 72 6-82 7-79 (157)
50 4ds2_A Ubiquitin-conjugating e 90.6 0.97 3.3E-05 35.0 7.6 26 58-83 68-93 (167)
51 2z6o_A UFM1-conjugating enzyme 90.3 0.16 5.4E-06 39.8 2.7 24 59-82 83-106 (172)
52 2a4d_A Ubiquitin-conjugating e 90.2 0.62 2.1E-05 36.0 6.1 69 7-83 29-100 (160)
53 3rcz_B SUMO-conjugating enzyme 90.2 0.58 2E-05 36.2 5.9 73 6-83 13-86 (163)
54 1yf9_A Ubiquitin carrier prote 89.9 0.62 2.1E-05 36.4 5.9 41 38-82 38-78 (171)
55 2f4z_A Tgtwinscan_2721 - E2 do 89.9 0.6 2E-05 37.3 5.9 28 56-83 89-116 (193)
56 1zuo_A Hypothetical protein LO 89.7 0.22 7.6E-06 39.5 3.3 24 60-83 90-113 (186)
57 3e46_A Ubiquitin-conjugating e 88.2 0.85 2.9E-05 38.0 5.9 41 38-82 90-130 (253)
58 4ddg_A Ubiquitin-conjugating e 87.2 2.2 7.5E-05 37.7 8.4 67 7-82 7-73 (399)
59 2hlw_A Ubiquitin-conjugating e 86.1 0.81 2.8E-05 35.7 4.4 70 6-83 38-110 (170)
60 3ceg_A Baculoviral IAP repeat- 85.6 1.3 4.6E-05 38.1 5.9 27 57-83 125-151 (323)
61 1tte_A Ubiquitin-conjugating e 85.6 0.41 1.4E-05 38.9 2.5 67 7-82 6-73 (215)
62 3m20_A 4-oxalocrotonate tautom 77.0 3.6 0.00012 25.9 4.3 33 76-109 1-33 (62)
63 3obq_A Tumor susceptibility ge 75.4 2.3 7.9E-05 32.4 3.4 24 59-82 69-92 (146)
64 3r3q_A Suppressor protein STP2 74.9 2.3 7.8E-05 33.0 3.3 24 59-82 81-104 (162)
65 2opa_A Probable tautomerase YW 74.8 3.9 0.00013 25.2 3.9 34 76-109 1-34 (61)
66 1otf_A 4-oxalocrotonate tautom 74.8 3.8 0.00013 25.3 3.9 34 76-109 1-34 (62)
67 3ry0_A Putative tautomerase; o 74.2 4 0.00014 25.8 3.9 34 76-109 1-34 (65)
68 2x4k_A 4-oxalocrotonate tautom 73.9 4.2 0.00014 25.0 3.9 35 75-109 3-37 (63)
69 3zqs_A E3 ubiquitin-protein li 72.7 27 0.00094 27.5 9.2 37 38-83 26-62 (186)
70 3m21_A Probable tautomerase HP 71.4 5.1 0.00018 25.5 4.0 34 76-109 1-37 (67)
71 3abf_A 4-oxalocrotonate tautom 70.3 5.2 0.00018 24.9 3.8 34 76-109 2-35 (64)
72 3mb2_A 4-oxalocrotonate tautom 69.1 4.6 0.00016 26.2 3.4 35 75-109 1-35 (72)
73 3ej9_A Alpha-subunit of trans- 65.5 7.6 0.00026 25.6 4.0 35 75-109 1-35 (76)
74 3qc5_X Platelet binding protei 58.6 21 0.0007 30.9 6.2 41 59-101 270-310 (360)
75 3ej9_B Beta-subunit of trans-3 55.1 17 0.00056 24.0 3.9 34 76-109 1-34 (70)
76 1gyx_A YDCE, B1461, hypothetic 52.1 21 0.00071 23.2 4.3 34 76-109 1-35 (76)
77 3mlc_A FG41 malonate semialdeh 47.8 29 0.00098 25.5 4.9 43 65-108 50-97 (136)
78 3mlc_A FG41 malonate semialdeh 39.7 25 0.00085 25.8 3.4 34 76-109 1-34 (136)
79 2aal_A Malonate semialdehyde d 37.6 35 0.0012 24.5 3.9 35 75-109 1-35 (131)
80 1p3q_Q VPS9P, vacuolar protein 34.7 28 0.00097 21.7 2.5 18 5-22 9-26 (54)
81 2wkb_A Macrophage migration in 28.3 73 0.0025 22.6 4.3 36 76-111 1-36 (125)
82 2wkb_A Macrophage migration in 27.5 50 0.0017 23.5 3.3 38 72-109 54-91 (125)
83 1hfo_A Migration inhibitory fa 27.1 79 0.0027 21.7 4.3 38 72-109 53-90 (113)
84 1mww_A Hypothetical protein HI 25.7 1.1E+02 0.0038 21.6 4.9 34 75-108 59-92 (128)
85 3c6v_A Probable tautomerase/de 25.3 1E+02 0.0035 23.3 4.8 34 75-109 22-56 (161)
86 1uiz_A MIF, macrophage migrati 24.7 95 0.0032 21.4 4.3 38 72-109 54-91 (115)
87 2aal_A Malonate semialdehyde d 24.0 1.4E+02 0.0048 21.1 5.2 32 76-108 67-98 (131)
88 3fcs_B Integrin beta-3; beta p 23.2 60 0.0021 30.7 3.7 51 37-98 85-135 (690)
89 2xcz_A Possible ATLS1-like lig 22.9 91 0.0031 21.5 3.9 36 73-108 55-90 (115)
90 2xcz_A Possible ATLS1-like lig 21.9 85 0.0029 21.7 3.6 35 76-111 2-36 (115)
91 3b64_A Macrophage migration in 21.5 1.3E+02 0.0044 20.6 4.5 35 76-111 1-36 (112)
92 3t5s_A Gilaa.00834.A, macropha 20.4 1.4E+02 0.0048 21.6 4.6 37 74-110 21-57 (135)
93 3b64_A Macrophage migration in 20.0 1.2E+02 0.0042 20.7 4.1 38 72-109 54-91 (112)
No 1
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=197.01 Aligned_cols=120 Identities=38% Similarity=0.534 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeE
Q 027704 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV 80 (220)
Q Consensus 1 m~d~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i 80 (220)
|||+.|+|.+|++||+|||+|+|+++++ .+..|+|+|.+..++. ...+++.|+|.||++||+++|.|.|
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~~~~-------~~~~~~i~i~~~~~~~----~~~~~~~L~v~~p~~YP~~~P~i~l 76 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTVLSE-------NPPSFTITVTSEAGEN----DETVQTTLKFTYSEKYPDEAPLYEI 76 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEECCS-------SSCEEEECCBCCCCTT----SCCCBEEEEEECCSSTTTSCCEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEEccC-------CCCEEEEEEecCCCCC----cCceeEEEEEEeCCCCCCCCceEEE
Confidence 8999999999999999999999998875 2479999998764321 2357899999999999999999999
Q ss_pred ecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccc
Q 027704 81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG 131 (220)
Q Consensus 81 ~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~~~~~ 131 (220)
.+.+||+..++..|.+.|.+.+++++|++|||+||+|+|++|.+++++++.
T Consensus 77 ~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~ 127 (128)
T 2ebm_A 77 FSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT 127 (128)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence 987899999999999999999999999999999999999999999988753
No 2
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-29 Score=196.71 Aligned_cols=120 Identities=24% Similarity=0.424 Sum_probs=107.6
Q ss_pred CCChHHHHHHHHHHHHhhcCCcceecccCcCCCC-CCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCcee
Q 027704 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLN-TSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (220)
Q Consensus 1 m~d~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~-~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~ 79 (220)
||+|.|+|.+|++||+|||||+|..+++..++|+ ..+.+|+|+|.+..++ ...+++.|+|.||++||+++|.|.
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~-----~~~~~~~L~~~~p~~YP~~~P~i~ 82 (138)
T 2yz0_A 8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKE-----PVESSITLHFAMTPMYPYTAPEIE 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCS-----SCCCEEEEEEECCSSTTSSCCEEE
T ss_pred ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCC-----CCceEEEEEEECCCCCCCCCCeEE
Confidence 6889999999999999999999999887555776 3457999999975432 235789999999999999999999
Q ss_pred EecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 027704 80 VKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 125 (220)
Q Consensus 80 i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~ 125 (220)
|.+.+||+..++..|++.|.+.+++++|++|||+||+|+||+|.++
T Consensus 83 l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 128 (138)
T 2yz0_A 83 FKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128 (138)
T ss_dssp EECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 9988999999999999999999999999999999999999999988
No 3
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=99.96 E-value=1.3e-28 Score=190.76 Aligned_cols=122 Identities=27% Similarity=0.419 Sum_probs=105.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCcceecccCcCCCC-CCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCcee
Q 027704 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLN-TSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (220)
Q Consensus 1 m~d~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~-~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~ 79 (220)
||+|.|+|.+|++||+|||+|+|+.+++.. +|. ..+.+|+|+|.+.+.++ ....+.+.|+|.||++||+++|.|.
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~-~~~~~~~~~~~i~l~~~~~~~---~~~~~~~~L~v~~p~~YP~~~P~i~ 83 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQDLRPDA-RGRVREPPEINLVLYPQGLAG---EEVYVQVELRVKCPPTYPDVVPEID 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEECCCCC-SSSCCCCCCEEEEECCTTSCS---SSCSCEEEEEECCCTTTTSSCCCCE
T ss_pred CcchHHHHHHHHHHHHHHCcccceeccCcc-cCccCCCcEEEEEEecCCcCC---cccceEEEEEEECCCCCCCCCCcEE
Confidence 799999999999999999999999887532 343 23579999998743221 1235789999999999999999999
Q ss_pred EecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh
Q 027704 80 VKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERY 126 (220)
Q Consensus 80 i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~ 126 (220)
+.+.+||+..++..|++.|.+++++++|++|||+||+||||+|.+++
T Consensus 84 l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~ 130 (137)
T 1ukx_A 84 LKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 130 (137)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcC
Confidence 98789999999999999999999999999999999999999998875
No 4
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=6.7e-27 Score=179.32 Aligned_cols=119 Identities=22% Similarity=0.300 Sum_probs=102.9
Q ss_pred CChHHHHHHHHHHHHhhcCC--cceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCcee
Q 027704 2 TDHVQEQEMEIEALEAILMD--EFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (220)
Q Consensus 2 ~d~~Eeq~~ElEaL~SIY~d--e~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~ 79 (220)
.++.|+|.+|++||+|||++ +|++++... ..+..|+|+|.+....+ ..+++.|+|+||++||+++|.|.
T Consensus 6 ~~~~e~q~~EleaL~SIy~d~~e~~~~~~~~----~~~~~f~i~l~~~~~~~-----~~~~~~L~~~~p~~YP~~~P~i~ 76 (128)
T 2ebk_A 6 SGMAEPVQEELSVLAAIFCRPHEWEVLSRSE----TDGTVFRIHTKAEGFMD-----ADIPLELVFHLPVNYPSCLPGIS 76 (128)
T ss_dssp CCSCHHHHHHHHHHHHHHCCTTTCCCSEECS----SSCEEEEEEEECCTTTT-----CCCEEEEEEEECSSTTSSCCCCC
T ss_pred hhHHHHHHHHHHHHHHHcCCCCceEEecCCC----CCCCeEEEEecCCCCCC-----CCeEEEEEEECCCCCCCCCCeEE
Confidence 45789999999999999998 898876421 12369999998764321 24689999999999999999999
Q ss_pred EecCCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhccc
Q 027704 80 VKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDA 130 (220)
Q Consensus 80 i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~~~~~~ 130 (220)
|. ++||++.++..|++.|.+.+++++|++|||+||+|+|++|.+++++++
T Consensus 77 l~-~~~L~~~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~~p~ 126 (128)
T 2ebk_A 77 IN-SEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQPE 126 (128)
T ss_dssp CC-CSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHHCCCC
T ss_pred EE-hhhCCHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCcC
Confidence 98 689999999999999999999999999999999999999999988764
No 5
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=99.94 E-value=1e-26 Score=178.19 Aligned_cols=118 Identities=29% Similarity=0.452 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 3 DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 3 d~~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
+..+.|.+|++||+|||+|+|+.+++.. ...+.+|+|+|.+..+++.+ ...+++.|+|+||++||+++|.|.+.+
T Consensus 8 e~~e~~~~EleaL~SIY~de~~~~~~~~---~~~~~~~~i~l~~~~~~~~~--~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 8 EEDWVLPSEVEVLESIYLDELQVIKGNG---RTSPWEIYITLHPATAEDQD--SQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CCCCHHHHHHHHHHHHSTTTEEEECCTT---SSCCEEEEEEECCSCCSSSS--CCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCceEEecCCC---CCCCeEEEEEEecCCCCCcc--ccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 4567899999999999999999886421 01347899999875433211 235789999999999999999999998
Q ss_pred CCCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Q 027704 83 LRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 125 (220)
Q Consensus 83 ~~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~~~ 125 (220)
.+||++.++..|++.|.+.+++++|++|||+||+++||+|.++
T Consensus 83 ~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~ 125 (128)
T 2day_A 83 PRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGP 125 (128)
T ss_dssp EESSCHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999654
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.92 E-value=1.5e-24 Score=171.08 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHhhcC--CcceecccC-----------cC-CCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEE
Q 027704 1 MTDHVQEQEMEIEALEAILM--DEFKEIHSG-----------ES-GLNTSNQCFQVTLSPQDDEADESTMPPVELALIFS 66 (220)
Q Consensus 1 m~d~~Eeq~~ElEaL~SIY~--de~~~~~~~-----------~~-~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~ 66 (220)
||+|.|+|.+||+||+|||| |+|+++++. .. .+......|+|+|...... ...+++.|+|.
T Consensus 6 ~~~~~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~-----~~~~~l~L~v~ 80 (152)
T 2dax_A 6 SGEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSD-----EKMAMFSLACI 80 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECST-----TCEEEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCC-----ccCceEEEEEE
Confidence 78899999999999999999 889887641 00 0110125899998764332 23578999999
Q ss_pred eCCCCCCCCCceeEecCCCCCHHhHHHHHHHHHHHHH-HhcCChhHHHHHHHHHHHHHHhhhcc
Q 027704 67 HTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMIYTLVTSAKEWLSERYSQD 129 (220)
Q Consensus 67 ~p~~YP~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~e-e~~G~~mIf~lv~~lqE~l~~~~~~~ 129 (220)
||++||+++|.|.|.+ .+++..+...|++.|...++ +++|++|||+||+||||++.+++.+.
T Consensus 81 lP~~YP~~~P~i~l~~-~~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~ 143 (152)
T 2dax_A 81 LPFKYPAVLPEITVRS-VLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRD 143 (152)
T ss_dssp ECSSTTSSCCCCEEEC-TTSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCeEEEEc-ccCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999995 56888888889998887765 58999999999999999999998664
No 7
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=99.90 E-value=1.7e-23 Score=165.45 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=96.9
Q ss_pred CChHHHHHHHHHHHHhhcC--CcceecccCc----------CCCCCC-CceEEEEeeCCCCCCCcCCCCCeEEEEEEEeC
Q 027704 2 TDHVQEQEMEIEALEAILM--DEFKEIHSGE----------SGLNTS-NQCFQVTLSPQDDEADESTMPPVELALIFSHT 68 (220)
Q Consensus 2 ~d~~Eeq~~ElEaL~SIY~--de~~~~~~~~----------~~~~~~-~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p 68 (220)
|++.|+|.+|||||+|||| |+|++++... ..+..+ ...|+|.|....+ ...+.|+|+||
T Consensus 13 ~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~--------~~~i~L~v~lP 84 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP--------KVKIDLQVTMP 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTT--------TEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCC--------CceEEEEEEcC
Confidence 5789999999999999999 8898875311 011111 1478877765322 24799999999
Q ss_pred CCCCCCCCceeEecCCCCCHHhHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHhhhccc
Q 027704 69 EKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASEN-LGMAMIYTLVTSAKEWLSERYSQDA 130 (220)
Q Consensus 69 ~~YP~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~-~G~~mIf~lv~~lqE~l~~~~~~~~ 130 (220)
++||+++|.|.|.+. +|+..+...|.+.|.+.++++ +|++|||+||+||||++.+++.+.+
T Consensus 85 ~~YP~~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~l~~~~ 146 (154)
T 2daw_A 85 HSYPYLALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNRK 146 (154)
T ss_dssp SSTTSSCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCCCC
T ss_pred CCCCCCCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999965 899999999999999988777 7999999999999999999887653
No 8
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.94 E-value=2.9e-10 Score=86.87 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHccCccccccCCCCCCCChHHHhhcCCC----------------CCccccccccc
Q 027704 149 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRA----------------TAVSQVSLCLF 212 (220)
Q Consensus 149 ~gt~vT~e~f~~Wk~kf~~e~~~~~~~~~~~~~~~~~~~~~ltGrqlfe~~~~----------------~~~~~~~~~~~ 212 (220)
..||||.++|+.||.+...++....++. ..++++|||++|..+.. +++++|||++|
T Consensus 34 nlTpVT~EtF~~WKk~k~~ek~~~~~~~--------~~kk~~tGRei~~~g~~~~~~f~~d~~~~d~d~~~g~awDLs~~ 105 (142)
T 4a9a_C 34 KLTPITIANFAQWKKDHVIAKINAEKKL--------SSKRKPTGREIILKMSAENKSFETDNADMPDDVTQGSAWDLTEF 105 (142)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCCHHHHHHHHHHC-------------------CCCCHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHHHHHhccccccccccccccccccccccccccHHHH
Confidence 4699999999999999988875443321 12356899999988631 35788999999
Q ss_pred cc
Q 027704 213 RC 214 (220)
Q Consensus 213 ~~ 214 (220)
+.
T Consensus 106 ~~ 107 (142)
T 4a9a_C 106 TD 107 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 84
No 9
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=95.87 E-value=0.05 Score=41.18 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCcceec-ccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCcee
Q 027704 1 MTDHVQEQEMEIEALEAILMDEFKEI-HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLN 79 (220)
Q Consensus 1 m~d~~Eeq~~ElEaL~SIY~de~~~~-~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~ 79 (220)
|......-..|+..|+.=-+..+.+. .... .+...+.+.|....+ .......+.|.|.+|++||..||.+.
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~ 91 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQ----NSITQWIVDMEGAPG----TLYEGEKFQLLFKFSSRYPFDSPQVM 91 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCC----CSCEEEEEEEECCTT----STTTTCEEEEEEEECTTTTTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCc----cccceeEEEEECCCC----CccccEEEEEEEECCCCCCCCCCEEE
Confidence 33333455678888876444444321 1110 022455666653222 12344678999999999999999999
Q ss_pred Eec
Q 027704 80 VKS 82 (220)
Q Consensus 80 i~~ 82 (220)
+..
T Consensus 92 F~T 94 (136)
T 2a7l_A 92 FTG 94 (136)
T ss_dssp EES
T ss_pred EeC
Confidence 864
No 10
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=94.75 E-value=0.18 Score=37.38 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..-..|+..|+.==+..+.+.-.. .+...+.+.|....+ .......+.+.+.+|++||..||.+.+..
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~~~-----~~l~~w~~~i~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t 76 (125)
T 2fo3_A 9 YRIQKELHNFLNNPPINCTLDVHP-----NNIRIWIVKYVGLEN----TIYANEVYKLKIIFPDDYPLKPPIVYFLQ 76 (125)
T ss_dssp CHHHHHHHHHHHSCCTTEEEEECT-----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCc-----chhhhhheEEeCCCC----CCcCCCEEEEEEEcCCCCCCCCCEEEEeC
Confidence 345668888875333333321110 022455665552211 12344678999999999999999999864
No 11
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=94.69 E-value=0.31 Score=36.61 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 5 ~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
...-..|+..|+.==+..+.+.-.. .....+.+.|....+ .......+.|.|.+|++||..||.+.+..
T Consensus 22 ~~RL~kEl~~l~~~~~~~~~~~~~~-----~nl~~W~~~I~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t 90 (136)
T 2h2y_A 22 NYRIQKELNNFLKNPPINCTIDVHP-----SNIRIWIVQYVGLEN----TIYANEVYKIKIIFPDNYPLKPPIVYFLQ 90 (136)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECT-----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCeEEEecc-----ccccccEEEEECCCC----CceeCCEEEEEEEeCCCCCCCCCEEEEeC
Confidence 3455678888875333333321110 022455565552211 12344678999999999999999999864
No 12
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=94.58 E-value=0.25 Score=38.08 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.--+..+.+..... ....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 17 RL~kEl~~l~~~~~~gi~~~~~~~-----~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 84 (158)
T 1zdn_A 17 LVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEG----TPYAGGLFRMKLLLGKDFPASPPKGYFLTK 84 (158)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC-----ChhheeEEEECCCC----CCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence 445788888765444444322110 22456666653211 123346789999999999999999998754
No 13
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=94.42 E-value=0.28 Score=38.19 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.--+..+.+.... .....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 25 RL~kEl~~l~~~~~~gi~~~~~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 92 (166)
T 2ayv_A 25 RINKELNDLSKDPPTNCSAGPVG-----DDMFHWQATIMGPED----SPYSGGVFFLNIHFPSDYPFKPPKVNFTTK 92 (166)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CCcceeeEEEECCCC----CCcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence 44678888876544444332111 123456666663221 123346789999999999999999998753
No 14
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=94.24 E-value=0.27 Score=37.57 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..-..|+..|+.-=+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 7 ~RL~~E~~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 7 KRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDD----TPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCC-----CccEEEEEEeCCCC----CCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence 3456788888865444444321110 12344445542211 123346789999999999999999998753
No 15
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=94.21 E-value=0.26 Score=37.76 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 5 ~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
...-..|+..|+.--+..+....... .....+.+.|.|.+. ......+.|.|.+|++||..||.+.+...
T Consensus 6 ~~RL~kEl~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~P~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (155)
T 1wzv_A 6 SMRVVKELEDLQKKPPPYLRNLSSDD----ANVLVWHALLLPDQP-----PYHLKAFNLRISFPPEYPFKPPMIKFTTK 75 (155)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEECS----SCTTEEEEEECCCST-----TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCC----CchheEEEEEcCCCC-----CCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence 34556789888875555554411110 022455555553321 13346789999999999999999998753
No 16
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=94.19 E-value=0.41 Score=36.83 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHh---hcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 6 QEQEMEIEALEA---ILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 6 Eeq~~ElEaL~S---IY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..-..|+..|+. .-+..+.+.-... ....+.+.|....+ .......+.|.|.+|++||..||.+.+..
T Consensus 11 ~RL~kEl~~l~~~~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t 81 (159)
T 2bep_A 11 QRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPD----TPYEGGRYQLEIKIPETYPFNPPKVRFIT 81 (159)
T ss_dssp HHHHHHHHHHHHCHHHHTTSEEEEECSS-----SSSEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEeCCC-----chheEEEEEECCCC----CCccCCEEEEEEeCCCcCCCCCCEEEeeC
Confidence 344568888875 2223333221110 22456666652211 12334578999999999999999999875
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=94.11 E-value=0.5 Score=36.24 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 5 ~Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
...-..|+..|+.-=+..+...... .....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 11 ~~RL~kEl~~l~~~~~~~i~~~p~~-----~~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (156)
T 2e2c_A 11 SKRLQQELRTLLMSGDPGITAFPDG-----DNLFKWVATLDGPKD----TVYESLKYKLTLEFPSDYPYKPPVVKFTTP 80 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECC-----CCccEEEEEEECCCC----CCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3455678888876433334332111 022455666553211 123346789999999999999999998754
No 18
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=94.05 E-value=0.34 Score=37.15 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.-=+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 9 RL~kEl~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~GP~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 9 RIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQD----SPFEGGTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp HHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC-----chheEEEEEECCCC----CCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence 445688888764333343321110 22456666642211 123346789999999999999999998753
No 19
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=93.95 E-value=0.37 Score=37.46 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.-=+..+.+.... .+...+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 23 RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegg~f~l~i~fp~~YP~~PP~v~F~T~ 90 (165)
T 2c4o_A 23 RIHKELNDLARDPPAQCSAGPVG-----DDMFHWQATIMGPND----SPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 90 (165)
T ss_dssp HHHHHHHHHHSSCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CCcceeEEEEECCCC----CCccCceEEEEEECCCcCCCCCCEEEEecC
Confidence 44568888876433334332111 023456666653211 123346789999999999999999998753
No 20
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=93.87 E-value=0.34 Score=37.85 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
-....|+..|+.--+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 7 ~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~----tpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 7 RRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPAD----TPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCC-----ccccceEEEECCCC----CCcCCCEEEEEEECcccCCCCCCccccccC
Confidence 3446788888865544444321110 12344455542211 123446789999999999999999998753
No 21
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=93.74 E-value=0.31 Score=37.17 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.-=+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 8 RL~kEl~~l~~~~~~~~~~~~~~~-----~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (150)
T 1z2u_A 8 RIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPE----SPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 75 (150)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEETT-----EEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC-----cceEEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence 445788888764444443321110 12345555552211 123446789999999999999999998643
No 22
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=93.66 E-value=0.34 Score=37.14 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.-=+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 9 RL~kE~~~l~~~~~~~i~~~~~~~-----~l~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (155)
T 1jat_A 9 RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQ----SPYEDGIFELELYLPDDYPMEAPKVRFLTK 76 (155)
T ss_dssp HHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTT----STTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC-----chhEEEEEEECCCC----CCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence 445688888764333343321110 12345555542211 123456799999999999999999988653
No 23
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=93.63 E-value=0.48 Score=36.88 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.-=+..+.+.-... ....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 8 RL~kEl~~l~~~~~~gi~~~~~~~-----~l~~w~~~I~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (169)
T 1yh2_A 8 RLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGAN----TPYEKGVFKLEVIIPERYPFEPPQIRFLTP 75 (169)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCC-----chheEEEEEECCCC----CCccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence 445788888765444443321110 22455555542211 123446789999999999999999998753
No 24
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=93.60 E-value=0.51 Score=35.97 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.-=+..+...... .+...+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 8 RL~kEl~~l~~~~~~~i~~~p~~-----~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 75 (151)
T 4gpr_A 8 RIQKELREIQQDPPCNCSAGPVG-----DDIFHWTATITGPDD----SPYQGGLFFLDVHFPVDYPFKAPRVTFMTK 75 (151)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESS-----SCTTEEEEEEECCSS----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CCceEEEEEEeCCCC----CCcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence 34567888876433443332111 022456666663211 123446789999999999999999987653
No 25
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=93.50 E-value=0.36 Score=36.75 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 8 QEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 8 q~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
-..|+..|+.-=+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 6 L~kEl~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 72 (149)
T 2r0j_A 6 ITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDG----TPYEGGTYKLELFLPEQYPMEPPKVRFLTK 72 (149)
T ss_dssp HHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCC-----cccEEEEEEECCCC----CCcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence 45678888764333333321110 12345555542211 123446789999999999999999998753
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=93.39 E-value=0.32 Score=38.90 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.-=+..+...... .....+.+.|....+ .......+.|.|.||++||..||.|.+...
T Consensus 52 RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 119 (194)
T 3bzh_A 52 RIQKELADITLDPPPNCSAGPKG-----DNIYEWRSTILGPPG----SVYEGGVFFLDITFTPEYPFKPPKVTFRTR 119 (194)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESS-----SCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCceeeccc-----CccccceEEEeCCCC----CCccCCEEEEEEECCCcCCCCCccccccCC
Confidence 44568888876433333332111 022455555543211 123346789999999999999999998753
No 27
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=93.28 E-value=0.53 Score=36.72 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.-=+..+...... .....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 27 RL~kEl~~l~~~~~~gi~~~p~~-----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 27 LLHRDFCDLKENNYKGITAKPVS-----EDMMEWEVEIEGLQN----SVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp HHHHHHHHHHHHCCTTEEEEECS-----TTSCEEEEEEECCTT----STTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CccccceeEEECCCC----CCccceEEEEEEECCccCCCCCCcceecCC
Confidence 44568888876444444332111 123456666652211 123446789999999999999999998753
No 28
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=93.27 E-value=0.62 Score=36.73 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.....|+..|+.-=+..+.+.-... .....+.+.|....+ .......+.|.|.||++||..||.+.+...
T Consensus 10 kRL~kEl~~l~~~~~~gi~~~~~~~----~nl~~W~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 79 (183)
T 3rz3_A 10 KALLLELKGLQEEPVEGFRVTLVDE----GDLYNWEVAIFGPPN----TYYEGGYFKARLKFPIDYPYSPPAFRFLTK 79 (183)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEECTT----CCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCc----cchhheeeeeeCCCC----CCCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence 4456788888765444454331110 022456666653211 123346688999999999999999998753
No 29
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=93.12 E-value=0.54 Score=38.23 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC---
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL--- 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~--- 83 (220)
.-..|+..|+.-=+..+.+..... ....+.+.|....+ .+.....+.|.|.+|++||..||.+.+...
T Consensus 27 RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~----TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 27 RLQKELKDIENENVQEIDAHIKDS-----NFFEWVGFIKGPEG----TPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp HHHHHHHHHHHSCTTTEEEEECSS-----CTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCC-----ccceeEEEEeCCCC----CCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 345678888764443343321110 22456666653211 123446789999999999999999998753
Q ss_pred CCCCHHhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 027704 84 RGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLS 123 (220)
Q Consensus 84 ~~L~~~~~~~L~~~L~~~~ee~~G~~mIf~lv~~lqE~l~ 123 (220)
.++....=......|.+.|.-.. -|-+++..|+..|.
T Consensus 98 PNI~~~~G~ICL~iL~~~WsP~~---ti~~VL~sI~sLL~ 134 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKNEWSPAL---TIRTALLSIQALLS 134 (216)
T ss_dssp TTBCTTTCBBCCHHHHHHCCTTC---CHHHHHHHHHHHHH
T ss_pred CCCcCCCCEEEchhhcccCCCCC---cHHHHHHHHHHHHh
Confidence 34432100111233334333222 25566666666664
No 30
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=92.79 E-value=0.95 Score=34.84 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.==+..+....... .....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 7 RL~kEl~~l~~~~~~gi~~~~~~~----~nl~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (164)
T 3h8k_A 7 RLMAEYKQLTLNPPEGIVAGPMNE----ENFFEWEALIMGPED----TCFEFGVFPAILSFPLDYPLSPPKMRFTCE 75 (164)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESST----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC----CCccEEEEEEeCCCC----CCCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence 345678888764444444321110 022456666653211 123446788999999999999999998753
No 31
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=92.74 E-value=0.69 Score=36.13 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 8 QEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 8 q~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
-..|+..|+.-=+..+...-... .....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 22 L~kEl~~l~~~~~~gi~~~p~~~----~nl~~W~~~I~GP~~----TpYegG~f~~~i~fp~~YP~~PP~v~F~T~ 89 (172)
T 2awf_A 22 LRRQLAELNKNPVEGFSAGLIDD----NDLYRWEVLIIGPPD----TLYEGGVFKAHLTFPKDYPLRPPKMKFITE 89 (172)
T ss_dssp HHHHHHHHHHSCCTTEEEEESST----TCTTEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCC----ccccccEEEEeCCCC----CCcCCcEEEEEEECCcccCCCCCcccccCC
Confidence 34678888765444444321100 012455555542211 123346789999999999999999998754
No 32
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=92.66 E-value=0.58 Score=35.52 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
.-..|+..|+.-=+..+...-... .....+.+.|....+ .......+.|.|.+|++||..||.+.+..
T Consensus 5 RL~~El~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t 72 (149)
T 1fxt_A 5 RIMKEIQAVKDDPAAHITLEFVSE----SDIHHLKGTFLGPPG----TPYEGGKFVVDIEVPMEYPFKPPKMQFDT 72 (149)
T ss_dssp HHHHHHHHHHHCGGGCCEEEESSS----SCSSEEEEEEECCSS----STTCSSEEEEEEECCTTTTSSCCEEEESS
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC----CCceEEEEEEECCCC----CCcCCcEEEEEEECCCCCCCCCCEEEEeC
Confidence 345678888754333333321110 012456666643211 12334578999999999999999999875
No 33
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=92.44 E-value=0.55 Score=36.40 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.=-+..+.+.-... ..-..+.+.|.|.+. ......+.|.|.+|++||..||.+.+...
T Consensus 18 RL~kEl~~l~~~~~~gi~~~~~~~----~~l~~w~~~igp~~t-----pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 85 (167)
T 3fn1_B 18 LLVKEVAELEANLPCTCKVHFPDP----NKLHCFQLTVTPDEG-----YYQGGKFQFETEVPDAYNMVPPKVKCLTK 85 (167)
T ss_dssp HHHHHHHHHGGGSCTTEEEECSSS----SCTTEEEEEECCSSS-----TTTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCC----CcceeEEEEECCCCC-----ccCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence 345688888865555554421110 012456666654322 23345688999999999999999998653
No 34
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=92.36 E-value=0.98 Score=34.83 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.-=+..+...-... .....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 8 RL~kEl~~l~~~~~~gi~~~~~~~----~~l~~w~~~i~GP~~----tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 8 RLLKELQQLIKDSPPGIVAGPKSE----NNIFIWDCLIQGPPD----TPYADGVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp HHHHHHHHHHHSCCTTEEEEESSS----SCCSEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC----CCccEEEEEEECCCC----CCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence 345688888764333344321100 012345555542211 123346789999999999999999998753
No 35
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=91.99 E-value=0.63 Score=36.69 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.-=+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 34 RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 101 (179)
T 1i7k_A 34 RLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAG----TVYEDLRYKLSLEFPSGYPYNAPTVKFLTP 101 (179)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEETT-----EEEEEEEEEEBCTT----STTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCC-----cccccEEEEECCCC----CCcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence 455688888764333333221100 11344444442211 123346789999999999999999998754
No 36
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=91.88 E-value=0.67 Score=36.75 Aligned_cols=68 Identities=4% Similarity=-0.040 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.-..|+..|+.==+..+....... ....+.+.|....+ .......+.|.|.+|++||..||.|.+...
T Consensus 18 RL~kEl~~l~~~~~~~i~~~p~~~-----nl~~W~~~I~GP~~----TpYegG~f~l~i~fP~~YP~~PP~v~f~T~ 85 (187)
T 2f4w_A 18 RLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEM----TPYEGGYYHGKLIFPREFPFKPPSIYMITP 85 (187)
T ss_dssp HHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCC-----ccceeEEEEeCCCC----CCCCCCEEEEEEEcCCCCCCCCCcccccCC
Confidence 445688888754333333221100 12345555542211 123456789999999999999999998753
No 37
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=91.77 E-value=0.41 Score=38.07 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=29.1
Q ss_pred eEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 39 CFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 39 ~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.+.+.|.|.+ .......+.|.|.+|++||..||.+.+...
T Consensus 65 ~w~~~I~p~~-----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 65 KLEVIVRPDE-----GYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp EEEEEECCSS-----STTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred eEEEEEcCCC-----CCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 5666665432 123345688999999999999999998753
No 38
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=91.69 E-value=0.37 Score=36.87 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=28.7
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+.+.|....+ .......+.+.|.+|++||..||.+.+..
T Consensus 29 ~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t 69 (152)
T 2onu_A 29 QDFDVMFHGPNG----TAYEGGIWKVHVTLPDDYPFASPSIGFMN 69 (152)
T ss_dssp EEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred ceEEEEEECCCC----CcccceEEEEEEcCcccCCCCCCeEEEec
Confidence 455566642211 12334678999999999999999999875
No 39
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=91.51 E-value=0.31 Score=37.32 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=28.6
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..+.+.|.|.+. ......+.|.|.+|++||..||.+.+...
T Consensus 33 ~~w~~~i~P~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 73 (154)
T 1c4z_D 33 LTWQGLIVPDNP-----PYDKGAFRIEINFPAEYPFKPPKITFKTK 73 (154)
T ss_dssp SEEEEEECCCSS-----SCCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred heEEEEEeCCCC-----CccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence 445555544321 13345688999999999999999998753
No 40
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=91.37 E-value=0.12 Score=39.77 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCCCCceeEecC
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..+.|.|.+|.+||..||.+.+...
T Consensus 85 yeFkLefdiP~tYP~tPPeI~Fp~l 109 (168)
T 3kpa_A 85 YEFEMNFDIPVTYPQAPPEIALPEL 109 (168)
T ss_dssp EEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred eEEEEEEeCCccCCCCCCEeecccc
Confidence 4689999999999999999998764
No 41
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=91.27 E-value=0.33 Score=37.49 Aligned_cols=41 Identities=17% Similarity=0.513 Sum_probs=29.3
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..+.+.|.|.+. ......+.|.+.+|++||..||.+.+...
T Consensus 35 ~~w~~~igp~~t-----pyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (160)
T 1y8x_A 35 LNFKLVICPDEG-----FYKSGKFVFSFKVGQGYPHDPPKVKCETM 75 (160)
T ss_dssp TEEEEEECCSSS-----TTTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred ceEEEEECCCCC-----CCCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence 456666644321 23345688999999999999999998753
No 42
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=91.20 E-value=0.43 Score=35.87 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhc-CCcceec--ccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAIL-MDEFKEI--HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY-~de~~~~--~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.-- +..+... +++. ..-..+.+.|....+ .......+.|.+.+|++||..||.+.+...
T Consensus 10 RL~kEl~~l~~~~~~~~~~~~~~~~~d----~nl~~w~~~i~GP~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 10 RLLEELEKGEKGFGPESCSYGLADSDD----ITMTKWNGTILGPPH----SNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp HHHHHHHHHHC----CCEEEEESSTTC----TTCCEEEEEEECCSS----STTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCC----CcceEEEEEEECCCC----CCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 4567888887542 2233321 1110 012356666653211 123446789999999999999999998753
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=91.19 E-value=0.42 Score=36.82 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcC-Ccceec--ccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILM-DEFKEI--HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~-de~~~~--~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.--+ ..+... .++. .....+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 25 RL~kEl~~l~~~~~~~~i~~~~~~~~d----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 25 RLLDELERGQKGNVSEGVSFGLESADD----ITLSNWSCTIFGQPG----TVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp HHHHHHHHHHCC-CCTTEEEEESSTTC----TTCCEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCcc----ccceeeEEEEECCCC----CCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 44568888875422 233321 1110 012355666653211 123446789999999999999999998754
No 44
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=91.16 E-value=1.4 Score=35.21 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=29.2
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+.+.|....+ .+.....+.|.|.+|++||..||.+.+..
T Consensus 38 ~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t 78 (201)
T 3k9o_A 38 TELRGEIAGPPD----TPYEGGRYQLEIKIPETYPFNPPKVRFIT 78 (201)
T ss_dssp SEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred cEEEEEEECCCC----CCCCCCEEEEEEECCCcCCCCCCcccccc
Confidence 456666652211 12344668999999999999999999875
No 45
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=90.80 E-value=0.46 Score=37.49 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
-....|+..|+. +.+.+.-.+ +...+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 28 ~RL~kEl~~l~~---~g~~v~~~d------dl~~W~~~I~GP~~----tpYegG~f~l~i~fp~~YP~~PP~V~F~t~ 92 (179)
T 2z5d_A 28 RRMDTDVIKLIE---SKHEVTILG------GLNEFVVKFYGPQG----TPYEGGVWKVRVDLPDKYPFKSPSIGFMNK 92 (179)
T ss_dssp HHHHHHHHHHHH---SSSCEEEEE------ETTEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHhcCc---CCCEEEECC------CCceeEEEEECCCC----CCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence 344567888762 333221110 12455665543211 123345689999999999999999998753
No 46
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=90.71 E-value=0.29 Score=38.62 Aligned_cols=41 Identities=17% Similarity=0.513 Sum_probs=29.0
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..+.+.|.|.+. ......+.|.|.+|++||..||.+.+...
T Consensus 55 ~~W~~~igP~~t-----pYegg~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 55 LNFKLVICPDEG-----FYKSGKFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp TEEEEEECCCSG-----GGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred cceEEEECCCCC-----CCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence 456666644321 12345688999999999999999998753
No 47
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=90.68 E-value=0.48 Score=36.99 Aligned_cols=41 Identities=15% Similarity=0.374 Sum_probs=29.3
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+.+.|....+ .......+.|.|.+|++||..||.+.+..
T Consensus 48 ~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t 88 (172)
T 2y9m_A 48 SKWEAIISGPSD----TPYENHQFRILIEVPSSYPMNPPKISFMQ 88 (172)
T ss_dssp TEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEECT
T ss_pred hEEEEEEECCCC----CcccCCEEEEEEECCCcCCCCCCEEEEee
Confidence 456666653211 12344678999999999999999999876
No 48
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=90.68 E-value=0.49 Score=36.50 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcCCcceecccC-cCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 6 QEQEMEIEALEAILMDEFKEIHSG-ESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~~-~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.....|+..|+.--+..+...... ..+ ......+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 10 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~-~~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 10 SRLAQERKAWRKDHPFGFVAVPTKNPDG-TMNLMNWECAIPGKKG----TPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTS-CEEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC-CCCccEEEEEEECCCC----CCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 445678888886544444332100 000 0011334455542211 113345688999999999999999998753
No 49
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=90.66 E-value=0.44 Score=36.64 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhcCCcceeccc-CcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 6 QEQEMEIEALEAILMDEFKEIHS-GESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~-~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
.....|+..|+.==+..+..... ...+ ......+.+.|....+ .......+.|.|.+|++||..||.+.+..
T Consensus 7 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~-~~nl~~w~~~I~Gp~~----tpyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (157)
T 2gjd_A 7 QRLQEERKKWRKDHPFGFYAKPVKKADG-SMDLQKWEAGIPGKEG----TNWAGGVYPITVEYPNEYPSKPPKVKFPA 79 (157)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEEECTTS-CEEEEEEEEEEECCTT----STTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccccCC-CCcccEEEEEEECCCC----CCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence 34567888887644433332110 0000 0011234455542211 12344678999999999999999999864
No 50
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=90.58 E-value=0.97 Score=35.01 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.5
Q ss_pred CeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 58 PVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
...+.|.|.+|++||..||.+.+...
T Consensus 68 gg~f~~~i~fp~~YP~~pP~v~f~t~ 93 (167)
T 4ds2_A 68 GNTYQLSVLFSDDYPHEPPTVRFVTP 93 (167)
T ss_dssp CCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 36688999999999999999998753
No 51
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=90.29 E-value=0.16 Score=39.81 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEEEEEeCCCCCCCCCceeEec
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+.|.|.+|.+||..||.+.+..
T Consensus 83 y~F~L~~~fPe~YP~~PPeV~F~~ 106 (172)
T 2z6o_A 83 YEFDIEFDIPITYPTTAPEIAVPE 106 (172)
T ss_dssp EEEEEEEECCTTTTTSCCCCBCGG
T ss_pred eEEEEEEECCCCCCCCCCeeeeCC
Confidence 478999999999999999999854
No 52
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=90.17 E-value=0.62 Score=36.04 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhcCCc-ceec--ccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 7 EQEMEIEALEAILMDE-FKEI--HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 7 eq~~ElEaL~SIY~de-~~~~--~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....|+..|+.=-++. +... +++. ..-..+.+.|....+ .......+.|.+.+|++||..||.+.+...
T Consensus 29 RL~kEl~~l~~~~~~g~~~~~~~~~~d----~~l~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 100 (160)
T 2a4d_A 29 RLLEELEEGQKGVGDGTVSWGLEDDED----MTLTRWTGMIIGPPR----TIYENRIYSLKIECGPKYPEAPPFVRFVTK 100 (160)
T ss_dssp HHHHHHHHHHSCCTTSSEEEEESSTTC----TTCCEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred HHHHHHHHHHhCCCCCcEEEEecCCcc----ccceeeEEEEECCCC----CCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence 4456888887643333 3221 2110 002356666653211 123346789999999999999999998754
No 53
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=90.17 E-value=0.58 Score=36.24 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcCCcceeccc-CcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 6 QEQEMEIEALEAILMDEFKEIHS-GESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de~~~~~~-~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.....|+..|+.==+..+...-. ..++ ......+.+.|....+ .......+.|.|.+|++||..||.+.+...
T Consensus 13 ~RL~kEl~~l~~~~p~gi~~~p~~~~d~-~~nl~~W~~~I~Gp~~----Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~ 86 (163)
T 3rcz_B 13 TRLQEERKQWRRDHPFGFYAKPCKSSDG-GLDLMNWKVGIPGKPK----TSWEGGLYKLTMAFPEEYPTRPPKCRFTPP 86 (163)
T ss_dssp HHHHHHHHHHHHSCCTTCEEEEEECTTS-SEEEEEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEccCcCC-CCCccEEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence 34466888887655554433211 0000 0011344555543211 123446788999999999999999998753
No 54
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=89.92 E-value=0.62 Score=36.41 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=29.1
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+.+.|....+ .......+.|.|.+|++||..||.|.+..
T Consensus 38 ~~w~~~I~GP~~----tpyegg~f~~~i~fp~~YP~~PP~v~F~t 78 (171)
T 1yf9_A 38 AEFWVEFKGPEG----TPYEDGTWMLHVQLPSDYPFKSPSIGFCN 78 (171)
T ss_dssp TEEEEEEECCTT----STTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred eEEEEEEECCCC----CCccCceEEEEEEcCCCCCCCCCeEEeec
Confidence 556666653211 12334678999999999999999999764
No 55
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=89.91 E-value=0.6 Score=37.28 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 56 MPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 56 ~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.....+.|.|.+|++||..||.|.+...
T Consensus 89 YegG~f~l~i~fp~~YP~~PP~V~F~T~ 116 (193)
T 2f4z_A 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTK 116 (193)
T ss_dssp TTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred cCCCEEEEEEECCCcCCCCCCeEEEecC
Confidence 3446789999999999999999998753
No 56
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=89.74 E-value=0.22 Score=39.54 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.1
Q ss_pred EEEEEEEeCCCCCCCCCceeEecC
Q 027704 60 ELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 60 ~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
.+.|.|.+|++||..||.|.+...
T Consensus 90 ~f~l~i~fp~~YP~~PP~V~f~tp 113 (186)
T 1zuo_A 90 YILLNFSFKDNFPFDPPFVRVVLP 113 (186)
T ss_dssp SEEEEEECCTTTTSSCCEEEEEES
T ss_pred EEEEEEECCCCCCCCCCeEEEeCC
Confidence 588999999999999999997643
No 57
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=88.21 E-value=0.85 Score=37.98 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=29.1
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+.+.|....+ .......+.|.|.+|++||..||.|.+..
T Consensus 90 ~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~V~F~T 130 (253)
T 3e46_A 90 TELRGEIAGPPD----TPYEGGRYQLEIKIPETYPFNPPKVRFIT 130 (253)
T ss_dssp SEEEEEEECCTT----STTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cEEEEEEECCCC----CCcCCCEEEEEEECCCCCCCCCCeeeecC
Confidence 456666652211 12344678999999999999999999864
No 58
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=87.24 E-value=2.2 Score=37.69 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
.-..|+..|+.==+..+...... .....+.+.|....+ .+.......+.+.+|++||..||.+.+..
T Consensus 7 RL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~Gp~~----tpyegg~f~~~i~fp~~YP~~pP~v~f~t 73 (399)
T 4ddg_A 7 RIHKELNDLARDPPAQCSAGPVG-----DDMFHWQATIMGPND----SPYQGGVFFLTIHFPTDYPFKPPKVAFTT 73 (399)
T ss_dssp HHHHHHHHHHHSCCSSEEEEEET-----TEEEEEEEEEECCTT----SSSTTCEEEEEEECCSSTTTSCCEEEESS
T ss_pred HHHHHHHHHHhCCCCCEEEEEcC-----CcceEEEEEEECCCC----CCCCCCEEEEEEECCcccCCCCcEEEeec
Confidence 34567777776433333322110 012345555552211 12345678899999999999999998764
No 59
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=86.09 E-value=0.81 Score=35.72 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCc-ceec--ccCcCCCCCCCceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 6 QEQEMEIEALEAILMDE-FKEI--HSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 6 Eeq~~ElEaL~SIY~de-~~~~--~~~~~~~~~~~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
-....|+..|+.=-++. +... +++. ..-..+.+.|....+ .......+.|.|.+|++||..||.+.+..
T Consensus 38 ~RL~kEl~~l~~~~~~g~~~~~~~~~~d----~nl~~W~~~I~GP~~----TpYegG~f~l~i~fp~~YP~~PP~v~F~T 109 (170)
T 2hlw_A 38 FRLLEELEEGQKGVGDGTVSWGLEDDED----MTLTRWTGMIIGPPR----TIYENRIYSLKIECGPKYPEAPPFVRFVT 109 (170)
T ss_dssp HHHHHHHHHHHHCCGGGCEEEEESSTTC----SSCCBEEEEECCCSS----STTSSCCBCEEEECCSSCTTSCCEEEECB
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecCccc----ccceeeEEEEeCCCC----CCcCCcEEEEEEECCCCCCCCCCeeEEec
Confidence 34556888887633333 2221 2110 002355666653211 11233457899999999999999999865
Q ss_pred C
Q 027704 83 L 83 (220)
Q Consensus 83 ~ 83 (220)
.
T Consensus 110 ~ 110 (170)
T 2hlw_A 110 K 110 (170)
T ss_dssp C
T ss_pred c
Confidence 3
No 60
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=85.61 E-value=1.3 Score=38.13 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 57 PPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 57 ~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
....+.|.|.+|++||..||.|.+...
T Consensus 125 egG~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 125 ANGCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp BTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred CCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence 345689999999999999999998653
No 61
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=85.59 E-value=0.41 Score=38.93 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhcCCcceecccCcCCCCCCC-ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEec
Q 027704 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSN-QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 7 eq~~ElEaL~SIY~de~~~~~~~~~~~~~~~-~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
....|+..|+.-=+..+....... .. ..+.+.|....+ .+.....+.|.|.+|++||..||.+.+..
T Consensus 6 RL~kEl~~l~~~~~~gi~~~p~~~-----~~l~~w~~~I~GP~~----TpYegG~f~l~i~fP~~YP~~PP~V~F~T 73 (215)
T 1tte_A 6 RIMKEIQAVKDDPAAHITLEFVSE-----SDIHHLKGTFLGPPG----TPYEGGKFVVDIEVPMEYPFKPPKMQFDT 73 (215)
T ss_dssp HHHHHHHHHHTTTCTTCEECCCSS-----SSCCEEEEECCEEEE----ETTEEECCEEEEECCSCSSSCCCEEEETT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC-----ccccccEEEEeCCCC----CCcCCCEEEEEEeCCccCCCCCCcccccC
Confidence 345678888764333343321110 11 245555542111 11233457899999999999999999865
No 62
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=77.01 E-value=3.6 Score=25.92 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.4
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.|.|.. .+.+.++...|.+.|.+...+.+|.+
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~ 33 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMD 33 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 7888887 88999999999999998888877754
No 63
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=75.39 E-value=2.3 Score=32.35 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.6
Q ss_pred eEEEEEEEeCCCCCCCCCceeEec
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+-+.+.+|.+||..||.+.+..
T Consensus 69 y~iPi~Iwlp~~YP~~pP~vfv~p 92 (146)
T 3obq_A 69 YNIPICLWLLDTYPYNPPICFVKP 92 (146)
T ss_dssp EEEEEEEECCTTTTTSCCEEEECC
T ss_pred ccceEEEEeCccCCCCCCEEEEeC
Confidence 456678999999999999998865
No 64
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=74.92 E-value=2.3 Score=32.96 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.9
Q ss_pred eEEEEEEEeCCCCCCCCCceeEec
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKS 82 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~ 82 (220)
..+-|.+.+|.+||..||.+.+..
T Consensus 81 Yn~pi~IwlP~~YP~~PP~v~v~p 104 (162)
T 3r3q_A 81 HSIPVIMWVPSMYPVKPPFISINL 104 (162)
T ss_dssp CEEEEEEECCTTTTTSCCEEEECG
T ss_pred ccccEEEEeCcccCCCCCEEEEEC
Confidence 347889999999999999999864
No 65
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=74.85 E-value=3.9 Score=25.25 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.2
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|....|.+.++...|.+.|.+...+.+|.+
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~ 34 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGAS 34 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6788876678899999999999998888877754
No 66
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=74.83 E-value=3.8 Score=25.32 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=28.2
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|....|.+.++...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p 34 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAP 34 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6788876678899999999999988888777754
No 67
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=74.16 E-value=4 Score=25.84 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=28.2
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|.-..|.+.++...|.+.|.+...+.+|.|
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p 34 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTP 34 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6777776788999999999999998888777754
No 68
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=73.87 E-value=4.2 Score=25.00 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=29.8
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.+.|....|.+.++...|.+.|.+...+.+|-|
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 68899887788999999999999998888877755
No 69
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=72.73 E-value=27 Score=27.45 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=26.6
Q ss_pred ceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecC
Q 027704 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (220)
Q Consensus 38 ~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~ 83 (220)
..+++++....+ -.-.|.|.++.+||.++|.+...-+
T Consensus 26 ~~i~l~~~D~~g---------R~H~l~v~l~~~yp~~~P~~~~DlP 62 (186)
T 3zqs_A 26 STIKLKAEDASG---------REHLITLKLKAKYPAESPDYFVDFP 62 (186)
T ss_dssp SEEEEEEECTTS---------CEEEEEEECCTTTTTSCCEEECCCS
T ss_pred cEEEEEEEeCCC---------CeEEEEEEECCCCCCCCCeeEEcCC
Confidence 566777753322 3456889999999999998887643
No 70
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=71.38 E-value=5.1 Score=25.53 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=28.1
Q ss_pred CceeEecCC---CCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLR---GIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~---~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|.-.. +.+.++...|.+.|.+...+.+|.+
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p 37 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKN 37 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 677887776 8999999999999998888777754
No 71
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=70.34 E-value=5.2 Score=24.89 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=28.1
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.|.|....+.+.++...|.+.|.+...+.+|-+
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~ 35 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEP 35 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7788876678899999999999998888877753
No 72
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=69.14 E-value=4.6 Score=26.20 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=28.9
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.|.|....|.+.++...|.+.|.+...+.+|.+
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p 35 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVP 35 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 37788876788999999999999998888777754
No 73
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=65.50 E-value=7.6 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.|.|....|.+.++...|.+.|.+...+.+|.|
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p 35 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEP 35 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 37888887788999999999999988887777754
No 74
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=58.62 E-value=21 Score=30.89 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.7
Q ss_pred eEEEEEEEeCCCCCCCCCceeEecCCCCCHHhHHHHHHHHHHH
Q 027704 59 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQE 101 (220)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~~~~L~~~L~~~ 101 (220)
-.+.|.+.|+|.+|. +.+.+..+.+|++.+...+++.+...
T Consensus 270 G~fklviKy~P~vP~--~KV~V~DPnnLTd~EKekVkeaVKkA 310 (360)
T 3qc5_X 270 GQFKLIIRFRIKTPE--NTVFVNNPNQLTEVEKNLVREAVKKS 310 (360)
T ss_dssp TEEEEEEECCCCCCS--SCEEESCTTSCCHHHHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCC--cceEecCcccCCHHHHHHHHHHHHHh
Confidence 467888899999995 66788888999999999999988763
No 75
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=55.13 E-value=17 Score=24.01 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=28.6
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.+.-..|.+.++...|...+.+..-+.+|.|
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap 34 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSD 34 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 6677776789999999999999998888888755
No 76
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=52.14 E-value=21 Score=23.22 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=26.8
Q ss_pred CceeEecCCC-CCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRG-IQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~-L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.|.|.-..| |+.++...|.+.|.+...+.+|.+
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip 35 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSK 35 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6777775566 599999999999988887777744
No 77
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=47.80 E-value=29 Score=25.51 Aligned_cols=43 Identities=7% Similarity=0.081 Sum_probs=31.7
Q ss_pred EEeCCCC---CC--CCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCC
Q 027704 65 FSHTEKY---PD--EPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (220)
Q Consensus 65 ~~~p~~Y---P~--~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~ 108 (220)
+.+++.| +. ..+.|.|....|-+.+++..|.+.|.+.. +.+|-
T Consensus 50 ~~~~~~ylg~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~ 97 (136)
T 3mlc_A 50 IIAEDAGLGFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL-APIGV 97 (136)
T ss_dssp EEECCTTSSCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTC
T ss_pred ccccccccCcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCC
Confidence 3556666 22 25667777667889999999999998888 77774
No 78
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=39.75 E-value=25 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=27.3
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
|.+.|.-..|.+.+++..|.+.+.+...+.+|.|
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP 34 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIP 34 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6777777788899999999999988877776654
No 79
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=37.62 E-value=35 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=27.3
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.+.|.-..+.+.++...|.+.+.+...+.+|-|
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p 35 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVP 35 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 37888887778898889999999888877666644
No 80
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=34.73 E-value=28 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhcCCc
Q 027704 5 VQEQEMEIEALEAILMDE 22 (220)
Q Consensus 5 ~Eeq~~ElEaL~SIY~de 22 (220)
..+..+.++.|++|||+-
T Consensus 9 ~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHcccC
Confidence 356678899999999964
No 81
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=28.27 E-value=73 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=28.1
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCChhH
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMI 111 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mI 111 (220)
|.+.|....++++.+...|.+.|.....+.+|-|-=
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~ 36 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVA 36 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCT
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHH
Confidence 677777666788888888999998888777776654
No 82
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=27.49 E-value=50 Score=23.50 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=25.7
Q ss_pred CCCCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 72 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 72 P~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
++..|.+.|....|.+.++...|.+.|.+...+.+|-+
T Consensus 54 ~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~ 91 (125)
T 2wkb_A 54 NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVK 91 (125)
T ss_dssp CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 44567788887777888899999999988888877743
No 83
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=27.10 E-value=79 Score=21.73 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 72 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 72 P~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
++..+.+.|....|.+.++...+.+.|.+...+.+|-+
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 90 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIP 90 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 44456777777778999999999999988888887743
No 84
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=25.72 E-value=1.1e+02 Score=21.57 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCC
Q 027704 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (220)
Q Consensus 75 ~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~ 108 (220)
.|.|.|....|.+.++...|.+.|.+...+.+|-
T Consensus 59 ~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~ 92 (128)
T 1mww_A 59 YTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGI 92 (128)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 4567777667899999999999998888777774
No 85
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=25.26 E-value=1e+02 Score=23.25 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=30.2
Q ss_pred CCceeEecCCC-CCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 75 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 75 ~P~i~i~~~~~-L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.|.+.|.-..| ++.+++..|.+.+.+..-+. |.|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P 56 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLP 56 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcC
Confidence 89999986777 69999999999999988888 988
No 86
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=24.70 E-value=95 Score=21.41 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=28.9
Q ss_pred CCCCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 72 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 72 P~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
.+..+.+.|....|.+.++...|.+.|.+...+.+|-+
T Consensus 54 ~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 91 (115)
T 1uiz_A 54 TDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIP 91 (115)
T ss_dssp CSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34455667776678999999999999988888877743
No 87
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=24.02 E-value=1.4e+02 Score=21.12 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=25.5
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCC
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~ 108 (220)
+.|.|. ..|.+.++...|.+.|.+...+.+|-
T Consensus 67 ~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~ 98 (131)
T 2aal_A 67 VLLTVI-SRPRSEEQKVCFYKLLTGALERDCGI 98 (131)
T ss_dssp EEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 456677 67889999999999998888777774
No 88
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=23.22 E-value=60 Score=30.65 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=31.6
Q ss_pred CceEEEEeeCCCCCCCcCCCCCeEEEEEEEeCCCCCCCCCceeEecCCCCCHHhHHHHHHHH
Q 027704 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKL 98 (220)
Q Consensus 37 ~~~f~I~i~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~i~~~~~L~~~~~~~L~~~L 98 (220)
|..++|+|+|. .+..+.|.|.-+.+|| .=++.|....+-...++..|++..
T Consensus 85 Pq~~~~~Lr~g---------~~~~f~~~~~~~~~~p--vDly~LmD~S~SM~ddi~~lk~l~ 135 (690)
T 3fcs_B 85 PQRIALRLRPD---------DSKNFSIQVRQVEDYP--VDIYYLMDLSYSMKDDLWSIQNLG 135 (690)
T ss_dssp SCEEEEEECTT---------CEEEEEEEEECCBTCC--EEEEEEEECSGGGHHHHHHTTTTT
T ss_pred CceEEEEeccC---------CcEEEEEEEeccCCCC--ccEEEEecCCcchHHHHHHHHHHH
Confidence 56777888763 2478999999999999 223334433343344555554443
No 89
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.85 E-value=91 Score=21.51 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=27.3
Q ss_pred CCCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCC
Q 027704 73 DEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (220)
Q Consensus 73 ~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~ 108 (220)
+..+.+.|....+.+.++...+.+.|.+...+.+|-
T Consensus 55 ~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi 90 (115)
T 2xcz_A 55 EPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGI 90 (115)
T ss_dssp SSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 334556676666788889999999998888877774
No 90
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=21.94 E-value=85 Score=21.68 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.5
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHHHhcCChhH
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMI 111 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~mI 111 (220)
|.+.|.-..+++++ ...|.+.+.+...+.+|-|-=
T Consensus 2 P~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~ 36 (115)
T 2xcz_A 2 PLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEK 36 (115)
T ss_dssp CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChH
Confidence 77787766677877 888999998888888887654
No 91
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=21.46 E-value=1.3e+02 Score=20.60 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=26.7
Q ss_pred CceeEecCCCCCHHhHHHHHHHHHHHHH-HhcCChhH
Q 027704 76 PLLNVKSLRGIQAGDLKILKEKLEQEAS-ENLGMAMI 111 (220)
Q Consensus 76 P~i~i~~~~~L~~~~~~~L~~~L~~~~e-e~~G~~mI 111 (220)
|.+.|....++++. ...|.+.+..... +.+|-|-=
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~ 36 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPED 36 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGG
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHH
Confidence 67777755677887 8888888888877 88886644
No 92
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=20.38 E-value=1.4e+02 Score=21.59 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=29.1
Q ss_pred CCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCChh
Q 027704 74 EPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAM 110 (220)
Q Consensus 74 ~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~m 110 (220)
..|.+.|....++++.+...|.+.|.....+.+|-|-
T Consensus 21 ~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe 57 (135)
T 3t5s_A 21 SMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPV 57 (135)
T ss_dssp CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCG
T ss_pred CcceEEEEecCccchhccchhHHHHHHHHHHhhCCch
Confidence 3788998866678878888899888888777777654
No 93
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=20.01 E-value=1.2e+02 Score=20.72 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCCCCceeEecCCCCCHHhHHHHHHHHHHHHHHhcCCh
Q 027704 72 PDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (220)
Q Consensus 72 P~~~P~i~i~~~~~L~~~~~~~L~~~L~~~~ee~~G~~ 109 (220)
++..+.+.|....|.+.++...+.+.|.+...+.+|-+
T Consensus 54 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~ 91 (112)
T 3b64_A 54 TDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIV 91 (112)
T ss_dssp CSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 34355666776667888899999999988888887743
Done!