Query 027705
Match_columns 220
No_of_seqs 150 out of 994
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 13:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 5.7E-69 1.2E-73 412.6 21.5 216 1-216 1-216 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 3.2E-36 6.9E-41 236.4 21.6 192 3-195 2-204 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 2.2E-32 4.8E-37 206.6 16.4 176 1-181 1-193 (198)
4 KOG0860 Synaptobrevin/VAMP-lik 100.0 1.9E-29 4.2E-34 179.8 12.2 89 122-210 26-114 (116)
5 PF00957 Synaptobrevin: Synapt 100.0 4E-29 8.7E-34 175.7 11.6 88 124-211 2-89 (89)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 1.2E-25 2.6E-30 174.4 15.9 182 1-186 1-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 5.8E-19 1.3E-23 122.4 11.0 81 28-109 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.8 0.00012 2.7E-09 57.5 7.6 80 126-205 95-174 (190)
9 PF00957 Synaptobrevin: Synapt 97.0 0.018 3.9E-07 39.9 10.2 76 125-204 10-85 (89)
10 PF03908 Sec20: Sec20; InterP 96.9 0.037 7.9E-07 38.7 11.3 75 129-206 5-89 (92)
11 KOG0810 SNARE protein Syntaxin 96.5 0.032 7E-07 47.4 10.1 71 125-197 206-279 (297)
12 KOG0811 SNARE protein PEP12/VA 96.3 0.049 1.1E-06 45.6 10.1 44 125-168 180-223 (269)
13 COG5074 t-SNARE complex subuni 96.0 0.077 1.7E-06 43.1 9.4 77 127-203 187-266 (280)
14 PF03908 Sec20: Sec20; InterP 94.5 1.1 2.4E-05 31.2 11.2 76 128-203 11-89 (92)
15 PF04086 SRP-alpha_N: Signal r 94.2 0.13 2.7E-06 43.4 5.9 66 26-94 5-72 (279)
16 PF10779 XhlA: Haemolysin XhlA 93.5 1.4 3.1E-05 29.1 9.2 51 152-205 19-69 (71)
17 PF09426 Nyv1_N: Vacuolar R-SN 93.4 0.15 3.2E-06 37.8 4.2 54 32-85 50-110 (141)
18 KOG0781 Signal recognition par 91.3 2.1 4.6E-05 38.8 9.5 86 4-92 4-95 (587)
19 COG5074 t-SNARE complex subuni 90.8 1.2 2.5E-05 36.4 6.9 30 181-210 247-276 (280)
20 PF03904 DUF334: Domain of unk 90.8 7.9 0.00017 31.5 11.6 23 190-212 151-173 (230)
21 PTZ00478 Sec superfamily; Prov 90.5 1.2 2.6E-05 30.2 5.7 60 147-206 8-67 (81)
22 KOG0810 SNARE protein Syntaxin 90.5 3.5 7.5E-05 35.2 9.9 63 133-204 227-289 (297)
23 PF05478 Prominin: Prominin; 90.4 4.8 0.0001 39.2 12.1 15 200-214 427-441 (806)
24 PF09753 Use1: Membrane fusion 89.6 7.4 0.00016 32.2 11.1 21 162-182 201-221 (251)
25 PRK01026 tetrahydromethanopter 89.3 3.5 7.5E-05 27.7 7.1 29 153-183 22-50 (77)
26 PF04210 MtrG: Tetrahydrometha 89.3 4.5 9.7E-05 26.5 7.6 30 152-183 18-47 (70)
27 PF04099 Sybindin: Sybindin-li 88.3 9.2 0.0002 28.8 10.8 85 30-116 46-141 (142)
28 PRK09400 secE preprotein trans 88.0 3.1 6.8E-05 26.7 6.1 53 155-207 3-55 (61)
29 PF04628 Sedlin_N: Sedlin, N-t 87.6 8.2 0.00018 28.6 9.2 109 7-116 1-131 (132)
30 TIGR01149 mtrG N5-methyltetrah 87.4 5.3 0.00012 26.2 6.8 29 153-183 19-47 (70)
31 KOG1666 V-SNARE [Intracellular 87.2 14 0.00031 29.8 10.7 27 179-205 189-215 (220)
32 KOG0860 Synaptobrevin/VAMP-lik 86.8 10 0.00022 27.6 10.6 37 148-184 59-95 (116)
33 KOG1983 Tomosyn and related SN 86.8 0.68 1.5E-05 45.9 3.6 44 143-186 945-988 (993)
34 KOG0938 Adaptor complexes medi 86.3 6.4 0.00014 34.1 8.7 85 5-93 6-94 (446)
35 PF01217 Clat_adaptor_s: Clath 84.1 15 0.00033 27.3 12.4 50 43-92 47-96 (141)
36 COG5325 t-SNARE complex subuni 83.6 16 0.00034 30.7 9.6 60 126-185 196-259 (283)
37 KOG3385 V-SNARE [Intracellular 83.5 3.8 8.3E-05 29.7 5.3 74 125-203 36-113 (118)
38 PF06789 UPF0258: Uncharacteri 83.5 0.42 9.1E-06 36.3 0.4 34 174-210 122-155 (159)
39 KOG3202 SNARE protein TLG1/Syn 82.2 18 0.0004 29.8 9.5 26 126-151 138-163 (235)
40 PF13800 Sigma_reg_N: Sigma fa 80.8 3.7 8.1E-05 28.6 4.5 13 176-188 5-17 (96)
41 cd07912 Tweety_N N-terminal do 80.7 19 0.00042 32.3 9.9 40 105-146 105-144 (418)
42 PF09889 DUF2116: Uncharacteri 80.6 8 0.00017 24.6 5.5 19 187-205 37-55 (59)
43 PF06008 Laminin_I: Laminin Do 79.6 28 0.0006 29.0 10.1 56 107-167 179-234 (264)
44 PF04799 Fzo_mitofusin: fzo-li 79.3 16 0.00035 28.5 7.8 48 127-174 111-158 (171)
45 PF09753 Use1: Membrane fusion 78.3 20 0.00043 29.7 8.8 16 158-173 204-219 (251)
46 PF11166 DUF2951: Protein of u 78.0 21 0.00045 25.0 9.2 21 127-147 30-50 (98)
47 PF11657 Activator-TraM: Trans 77.8 28 0.00061 26.4 12.5 69 68-146 21-90 (144)
48 PF05478 Prominin: Prominin; 76.3 36 0.00078 33.3 11.1 44 168-211 398-441 (806)
49 PF08006 DUF1700: Protein of u 76.0 35 0.00076 26.6 10.5 11 78-88 5-15 (181)
50 TIGR00327 secE_euk_arch protei 75.4 11 0.00024 24.2 5.0 45 163-207 7-51 (61)
51 KOG3498 Preprotein translocase 73.8 13 0.00029 24.0 5.0 52 155-206 4-55 (67)
52 PF13800 Sigma_reg_N: Sigma fa 73.8 7.8 0.00017 27.0 4.5 20 178-197 4-23 (96)
53 PRK10884 SH3 domain-containing 73.7 46 0.001 26.8 11.4 20 151-170 130-149 (206)
54 KOG2635 Medium subunit of clat 73.2 70 0.0015 28.9 10.9 35 42-76 45-79 (512)
55 PF04510 DUF577: Family of unk 71.6 30 0.00064 27.1 7.5 107 62-187 65-171 (174)
56 PF13124 DUF3963: Protein of u 71.3 9 0.0002 21.7 3.3 22 182-203 17-38 (40)
57 PF06072 Herpes_US9: Alphaherp 71.0 18 0.00039 23.0 5.0 9 166-174 8-16 (60)
58 PF05568 ASFV_J13L: African sw 70.9 8.3 0.00018 29.2 4.1 24 187-210 29-52 (189)
59 COG4064 MtrG Tetrahydromethano 70.8 27 0.00059 22.9 6.1 29 153-183 22-50 (75)
60 KOG3894 SNARE protein Syntaxin 69.6 72 0.0016 27.4 10.0 62 106-172 215-283 (316)
61 PF07798 DUF1640: Protein of u 67.2 58 0.0013 25.4 11.2 24 126-149 81-104 (177)
62 KOG0812 SNARE protein SED5/Syn 65.6 85 0.0018 26.7 9.8 45 125-169 227-274 (311)
63 PF04906 Tweety: Tweety; Inte 65.3 1E+02 0.0022 27.5 10.8 10 186-195 182-191 (406)
64 KOG0811 SNARE protein PEP12/VA 64.9 58 0.0013 27.4 8.5 20 167-186 219-238 (269)
65 PHA02673 ORF109 EEV glycoprote 64.0 18 0.00039 27.8 4.9 22 189-210 37-58 (161)
66 PF11337 DUF3139: Protein of u 63.2 10 0.00022 25.9 3.1 9 202-210 19-27 (85)
67 PF07204 Orthoreo_P10: Orthore 61.2 6.3 0.00014 27.5 1.8 24 187-210 40-63 (98)
68 KOG1326 Membrane-associated pr 60.5 13 0.00028 36.7 4.3 42 167-208 1049-1090(1105)
69 PRK10299 PhoPQ regulatory prot 60.3 8.5 0.00018 23.1 2.0 25 186-210 2-28 (47)
70 KOG2678 Predicted membrane pro 60.2 45 0.00098 27.2 6.7 48 158-209 192-239 (244)
71 KOG3208 SNARE protein GS28 [In 59.4 97 0.0021 25.3 8.9 19 189-207 209-229 (231)
72 PF03164 Mon1: Trafficking pro 59.4 1.1E+02 0.0024 27.4 9.9 86 7-92 16-104 (415)
73 KOG0859 Synaptobrevin/VAMP-lik 58.5 51 0.0011 26.4 6.6 76 132-210 125-207 (217)
74 PF09680 Tiny_TM_bacill: Prote 58.4 7.6 0.00016 19.9 1.3 10 197-206 10-19 (24)
75 KOG0809 SNARE protein TLG2/Syn 57.5 60 0.0013 27.6 7.2 32 126-157 219-250 (305)
76 PF12352 V-SNARE_C: Snare regi 57.1 48 0.001 21.0 7.5 58 124-181 7-64 (66)
77 COG2443 Sss1 Preprotein transl 55.0 56 0.0012 21.2 5.8 38 168-205 17-54 (65)
78 PF00558 Vpu: Vpu protein; In 53.1 20 0.00044 24.3 3.2 21 190-210 6-26 (81)
79 PHA03011 hypothetical protein; 52.8 59 0.0013 23.0 5.5 58 106-165 61-118 (120)
80 COG1422 Predicted membrane pro 52.4 1.2E+02 0.0026 24.3 10.6 72 125-211 72-146 (201)
81 PF12420 DUF3671: Protein of u 51.8 65 0.0014 22.9 5.8 36 157-200 22-57 (104)
82 PF08999 SP_C-Propep: Surfacta 51.7 31 0.00067 23.4 3.8 22 187-208 32-53 (93)
83 PF05739 SNARE: SNARE domain; 50.9 59 0.0013 20.2 8.1 42 125-166 4-45 (63)
84 PF00429 TLV_coat: ENV polypro 50.8 28 0.00062 32.5 4.8 21 124-144 441-461 (561)
85 PRK10600 nitrate/nitrite senso 50.7 2E+02 0.0043 26.5 10.4 20 132-151 68-87 (569)
86 PF12751 Vac7: Vacuolar segreg 50.6 18 0.00038 32.0 3.2 30 180-209 294-323 (387)
87 PHA02557 22 prohead core prote 50.2 54 0.0012 27.5 5.8 92 76-167 89-189 (271)
88 PF05781 MRVI1: MRVI1 protein; 48.8 66 0.0014 29.8 6.7 19 201-219 488-506 (538)
89 PF14992 TMCO5: TMCO5 family 48.3 1.7E+02 0.0037 24.8 11.4 20 178-197 208-227 (280)
90 PF03607 DCX: Doublecortin; I 47.3 27 0.00059 22.0 3.0 49 22-70 8-58 (60)
91 PF08372 PRT_C: Plant phosphor 47.2 91 0.002 24.0 6.3 11 177-187 83-93 (156)
92 PF05659 RPW8: Arabidopsis bro 47.0 42 0.0009 25.5 4.5 49 106-154 31-80 (147)
93 TIGR01732 tiny_TM_bacill conse 46.8 17 0.00037 19.0 1.6 10 197-206 12-21 (26)
94 PF12575 DUF3753: Protein of u 45.9 34 0.00073 22.7 3.2 8 134-141 24-31 (72)
95 PF02038 ATP1G1_PLM_MAT8: ATP1 45.9 50 0.0011 20.3 3.8 21 185-205 11-31 (50)
96 PF00482 T2SF: Type II secreti 45.6 32 0.0007 23.9 3.6 16 105-120 29-44 (124)
97 PF03302 VSP: Giardia variant- 45.5 12 0.00027 33.2 1.6 14 200-213 383-396 (397)
98 PF04888 SseC: Secretion syste 45.0 1.8E+02 0.0039 24.6 8.6 36 131-166 18-53 (306)
99 KOG1691 emp24/gp25L/p24 family 44.7 99 0.0022 25.0 6.4 33 132-164 144-176 (210)
100 PF11675 DUF3271: Protein of u 44.4 78 0.0017 26.1 5.8 50 2-53 30-79 (249)
101 PF06837 Fijivirus_P9-2: Fijiv 43.7 82 0.0018 25.0 5.6 37 130-166 21-59 (214)
102 PRK13664 hypothetical protein; 43.4 47 0.001 21.0 3.4 19 184-202 3-21 (62)
103 PF15339 Afaf: Acrosome format 42.5 46 0.00099 26.0 4.0 22 189-210 129-151 (200)
104 PF14575 EphA2_TM: Ephrin type 42.2 33 0.00072 22.9 2.9 18 193-210 6-23 (75)
105 KOG3287 Membrane trafficking p 41.8 1.9E+02 0.0042 23.6 8.6 73 140-212 150-227 (236)
106 KOG3385 V-SNARE [Intracellular 41.6 1.3E+02 0.0028 21.9 6.0 19 190-208 96-115 (118)
107 TIGR03545 conserved hypothetic 40.5 1.4E+02 0.0031 27.9 7.7 68 106-173 168-239 (555)
108 TIGR01478 STEVOR variant surfa 40.2 48 0.001 28.1 4.1 25 191-215 266-290 (295)
109 PRK11546 zraP zinc resistance 39.8 1.7E+02 0.0036 22.2 6.8 20 121-140 85-104 (143)
110 PF06008 Laminin_I: Laminin Do 39.7 1.2E+02 0.0026 25.2 6.5 52 128-179 55-106 (264)
111 KOG2740 Clathrin-associated pr 39.7 1E+02 0.0022 27.2 6.0 44 49-92 53-96 (418)
112 PF10372 YojJ: Bacterial membr 39.5 1.1E+02 0.0024 20.2 5.9 24 153-176 42-65 (70)
113 PF05957 DUF883: Bacterial pro 39.3 1.3E+02 0.0027 20.7 10.0 18 132-149 27-44 (94)
114 KOG4782 Predicted membrane pro 38.9 1E+02 0.0023 21.5 4.9 35 163-197 28-66 (108)
115 COG4327 Predicted membrane pro 38.9 65 0.0014 22.5 3.9 32 175-206 5-36 (101)
116 smart00397 t_SNARE Helical reg 38.8 93 0.002 19.0 6.3 44 125-168 12-55 (66)
117 PF03238 ESAG1: ESAG protein; 38.8 1.2E+02 0.0027 24.5 6.0 56 142-197 6-61 (231)
118 PF08006 DUF1700: Protein of u 38.7 1.8E+02 0.004 22.4 9.0 18 144-161 32-49 (181)
119 PHA01811 hypothetical protein 38.6 44 0.00094 21.5 2.8 19 41-59 4-22 (78)
120 PF09125 COX2-transmemb: Cytoc 38.2 76 0.0016 18.1 3.4 14 189-202 14-27 (38)
121 PTZ00370 STEVOR; Provisional 38.2 41 0.00088 28.6 3.4 25 191-215 262-286 (296)
122 KOG3230 Vacuolar assembly/sort 38.0 1.2E+02 0.0026 24.3 5.8 23 132-154 133-155 (224)
123 PF12325 TMF_TATA_bd: TATA ele 37.8 80 0.0017 23.2 4.6 59 108-166 50-109 (120)
124 COG5185 HEC1 Protein involved 37.4 3.3E+02 0.0072 25.1 10.2 53 127-183 273-325 (622)
125 COG5547 Small integral membran 37.2 52 0.0011 20.8 2.9 14 184-197 3-16 (62)
126 COG2018 Uncharacterized distan 37.0 1.7E+02 0.0036 21.5 8.1 68 6-73 23-101 (119)
127 PF05393 Hum_adeno_E3A: Human 36.9 35 0.00076 23.5 2.3 9 202-210 46-54 (94)
128 PF13706 PepSY_TM_3: PepSY-ass 36.6 63 0.0014 18.2 3.1 16 183-198 3-18 (37)
129 PF01601 Corona_S2: Coronaviru 36.1 10 0.00022 35.3 -0.4 14 105-118 480-493 (610)
130 KOG3369 Transport protein part 35.8 2.2E+02 0.0047 22.5 9.7 72 41-116 121-196 (199)
131 PHA03049 IMV membrane protein; 35.2 49 0.0011 21.5 2.7 10 196-205 13-22 (68)
132 PF10168 Nup88: Nuclear pore c 34.9 2.7E+02 0.0058 27.0 8.8 18 138-155 595-612 (717)
133 PF01102 Glycophorin_A: Glycop 34.8 60 0.0013 23.9 3.5 8 192-199 68-75 (122)
134 PRK06041 flagellar assembly pr 34.6 3.9E+02 0.0084 25.0 11.9 34 143-176 148-182 (553)
135 PF06103 DUF948: Bacterial pro 34.6 1.5E+02 0.0032 20.1 7.7 13 127-139 35-47 (90)
136 PF06695 Sm_multidrug_ex: Puta 34.5 1.4E+02 0.003 21.8 5.5 14 181-194 65-78 (121)
137 PF03670 UPF0184: Uncharacteri 34.5 87 0.0019 21.4 4.0 29 155-183 42-70 (83)
138 TIGR00060 L18_bact ribosomal p 34.2 1E+02 0.0022 22.4 4.6 51 4-54 36-97 (114)
139 PF14712 Snapin_Pallidin: Snap 34.1 1.4E+02 0.0031 20.2 5.2 23 155-177 66-88 (92)
140 PF05399 EVI2A: Ectropic viral 34.0 35 0.00075 27.6 2.3 15 188-202 126-140 (227)
141 cd00193 t_SNARE Soluble NSF (N 33.8 1.1E+02 0.0023 18.3 6.3 44 125-168 6-49 (60)
142 PF14914 LRRC37AB_C: LRRC37A/B 33.6 45 0.00097 25.4 2.7 8 189-196 120-127 (154)
143 PHA03386 P10 fibrous body prot 33.4 79 0.0017 22.0 3.7 15 125-139 19-33 (94)
144 PF04799 Fzo_mitofusin: fzo-li 33.2 2.4E+02 0.0051 22.1 6.7 18 129-146 102-119 (171)
145 PF07172 GRP: Glycine rich pro 32.9 51 0.0011 23.1 2.8 14 189-202 4-17 (95)
146 PF05531 NPV_P10: Nucleopolyhe 32.6 66 0.0014 21.6 3.1 38 125-166 18-55 (75)
147 PTZ00032 60S ribosomal protein 32.4 90 0.0019 25.1 4.3 52 4-55 117-195 (211)
148 PF15106 TMEM156: TMEM156 prot 32.3 29 0.00063 28.0 1.6 29 180-208 168-196 (226)
149 PF06422 PDR_CDR: CDR ABC tran 32.3 60 0.0013 22.9 3.1 36 170-205 34-69 (103)
150 KOG1690 emp24/gp25L/p24 family 32.3 1.7E+02 0.0037 23.6 5.8 16 170-185 170-186 (215)
151 PF13908 Shisa: Wnt and FGF in 32.1 21 0.00045 27.9 0.8 18 193-210 80-97 (179)
152 PF02009 Rifin_STEVOR: Rifin/s 32.0 45 0.00099 28.5 2.9 7 13-19 19-25 (299)
153 PF14004 DUF4227: Protein of u 32.0 88 0.0019 20.7 3.6 25 183-207 2-26 (71)
154 COG1969 HyaC Ni,Fe-hydrogenase 31.7 53 0.0011 26.5 2.9 39 177-215 96-152 (227)
155 PF01708 Gemini_mov: Geminivir 31.6 20 0.00043 24.8 0.5 26 185-210 34-59 (91)
156 COG3763 Uncharacterized protei 31.3 83 0.0018 20.7 3.3 9 196-204 10-18 (71)
157 KOG3251 Golgi SNAP receptor co 31.2 2.9E+02 0.0062 22.4 10.0 58 143-202 136-204 (213)
158 KOG4331 Polytopic membrane pro 31.0 2.2E+02 0.0047 28.0 7.3 37 125-161 328-365 (865)
159 PF07352 Phage_Mu_Gam: Bacteri 30.9 2.2E+02 0.0047 21.4 6.2 48 126-173 11-59 (149)
160 KOG3368 Transport protein part 30.9 2.1E+02 0.0047 21.4 5.8 55 29-85 45-102 (140)
161 COG5415 Predicted integral mem 30.8 2.8E+02 0.006 22.6 6.8 22 151-172 13-34 (251)
162 KOG3637 Vitronectin receptor, 30.8 51 0.0011 33.2 3.3 22 192-213 984-1005(1030)
163 PF10779 XhlA: Haemolysin XhlA 30.6 1.6E+02 0.0034 19.2 9.0 34 162-201 36-69 (71)
164 PHA03164 hypothetical protein; 30.6 1.1E+02 0.0024 20.5 3.8 18 190-207 60-77 (88)
165 PF05961 Chordopox_A13L: Chord 30.4 65 0.0014 21.0 2.7 9 197-205 14-22 (68)
166 PF10031 DUF2273: Small integr 30.3 74 0.0016 19.5 2.9 12 183-194 2-13 (51)
167 PF14257 DUF4349: Domain of un 30.0 3.2E+02 0.0068 22.5 8.5 17 123-139 160-176 (262)
168 PF10853 DUF2650: Protein of u 30.0 80 0.0017 18.2 2.8 19 182-200 18-36 (38)
169 PF10392 COG5: Golgi transport 29.9 2.3E+02 0.0049 20.8 6.3 43 140-182 52-94 (132)
170 PF03317 ELF: ELF protein; In 29.8 57 0.0012 26.2 2.8 36 183-218 55-91 (284)
171 KOG0862 Synaptobrevin/VAMP-lik 29.8 3.1E+02 0.0067 22.3 9.1 66 127-194 120-196 (216)
172 PF04531 Phage_holin_1: Bacter 29.8 48 0.001 22.6 2.2 25 179-203 2-26 (84)
173 PRK14125 cell division suppres 29.7 88 0.0019 22.2 3.6 15 182-196 2-16 (103)
174 PF13937 DUF4212: Domain of un 29.6 1.6E+02 0.0035 20.0 4.7 25 180-204 3-27 (81)
175 COG3524 KpsE Capsule polysacch 29.6 74 0.0016 27.4 3.6 18 124-141 229-246 (372)
176 PF12777 MT: Microtubule-bindi 29.5 3.4E+02 0.0073 23.5 7.9 11 205-215 319-329 (344)
177 KOG0448 Mitofusin 1 GTPase, in 29.4 4.8E+02 0.01 25.3 9.1 83 100-182 651-737 (749)
178 PLN03223 Polycystin cation cha 29.4 88 0.0019 32.5 4.6 44 124-167 1580-1623(1634)
179 PF06825 HSBP1: Heat shock fac 29.4 1.1E+02 0.0023 19.1 3.5 38 129-169 14-51 (54)
180 PF00517 GP41: Retroviral enve 29.3 2E+02 0.0043 23.1 6.0 18 129-146 105-122 (204)
181 PRK10884 SH3 domain-containing 29.2 3E+02 0.0066 22.1 10.5 12 158-169 144-155 (206)
182 PF07439 DUF1515: Protein of u 29.2 2.2E+02 0.0048 20.5 8.7 46 128-173 11-60 (112)
183 COG4499 Predicted membrane pro 29.0 56 0.0012 29.0 2.9 30 28-57 40-69 (434)
184 PF06143 Baculo_11_kDa: Baculo 28.5 1.4E+02 0.003 20.5 4.2 9 182-190 30-38 (84)
185 PF10875 DUF2670: Protein of u 28.3 79 0.0017 23.2 3.1 24 184-207 19-42 (139)
186 PF11446 DUF2897: Protein of u 28.3 84 0.0018 19.7 2.9 16 190-205 5-20 (55)
187 PF03030 H_PPase: Inorganic H+ 28.2 2.2E+02 0.0047 27.4 6.8 48 147-205 14-61 (682)
188 PF13980 UPF0370: Uncharacteri 28.2 83 0.0018 20.0 2.8 10 184-193 3-12 (63)
189 KOG1666 V-SNARE [Intracellular 28.1 3.3E+02 0.0072 22.2 11.4 35 174-208 180-214 (220)
190 PF10039 DUF2275: Predicted in 28.1 1.1E+02 0.0024 24.9 4.3 19 182-200 28-46 (218)
191 PF10112 Halogen_Hydrol: 5-bro 28.0 1.9E+02 0.004 22.8 5.7 43 108-150 135-181 (199)
192 PF11026 DUF2721: Protein of u 27.9 2.5E+02 0.0054 20.6 8.3 22 173-194 49-70 (130)
193 PRK11901 hypothetical protein; 27.6 76 0.0016 27.5 3.4 24 191-214 39-62 (327)
194 KOG1655 Protein involved in va 27.6 1.4E+02 0.0029 24.0 4.5 35 132-166 111-146 (218)
195 PHA02947 S-S bond formation pa 27.6 59 0.0013 26.3 2.6 47 25-72 11-62 (215)
196 PRK09697 protein secretion pro 27.5 51 0.0011 23.8 2.0 32 182-215 18-52 (139)
197 PF02646 RmuC: RmuC family; I 27.3 3.2E+02 0.0069 23.3 7.3 39 127-165 22-60 (304)
198 TIGR03782 Bac_Flav_CT_J Bacter 27.0 4.2E+02 0.009 22.9 9.1 63 153-215 133-202 (322)
199 PF04272 Phospholamban: Phosph 26.9 1.5E+02 0.0032 17.7 4.3 12 196-207 39-50 (52)
200 KOG0972 Huntingtin interacting 26.9 3.2E+02 0.0068 23.5 6.8 16 76-91 246-261 (384)
201 PF10498 IFT57: Intra-flagella 26.7 2.8E+02 0.0062 24.4 6.9 34 158-191 317-352 (359)
202 PHA02911 C-type lectin-like pr 26.7 1.7E+02 0.0038 23.6 5.1 24 150-173 2-25 (213)
203 KOG4433 Tweety transmembrane/c 26.7 2.7E+02 0.0059 25.6 6.8 10 184-193 204-213 (526)
204 PF02697 DUF217: Uncharacteriz 26.6 1.6E+02 0.0034 19.4 4.1 11 106-116 23-33 (71)
205 PF00306 ATP-synt_ab_C: ATP sy 26.6 1.4E+02 0.0029 21.2 4.2 41 141-181 3-45 (113)
206 smart00096 UTG Uteroglobin. 26.5 1.2E+02 0.0026 19.9 3.5 39 112-150 22-61 (69)
207 PHA02692 hypothetical protein; 26.3 52 0.0011 21.6 1.7 8 134-141 24-31 (70)
208 PF04906 Tweety: Tweety; Inte 26.2 4.7E+02 0.01 23.3 8.9 18 179-196 178-195 (406)
209 KOG3950 Gamma/delta sarcoglyca 26.1 1.1E+02 0.0024 25.4 4.0 32 184-215 32-64 (292)
210 PRK10381 LPS O-antigen length 26.1 1E+02 0.0022 27.2 4.2 18 182-199 34-51 (377)
211 COG3771 Predicted membrane pro 26.0 56 0.0012 22.5 1.9 15 201-215 51-65 (97)
212 PF04048 Sec8_exocyst: Sec8 ex 26.0 1.8E+02 0.004 21.7 5.0 37 127-163 81-117 (142)
213 KOG3065 SNAP-25 (synaptosome-a 25.8 2.8E+02 0.006 23.5 6.4 45 127-171 220-264 (273)
214 PF04120 Iron_permease: Low af 25.4 80 0.0017 23.6 2.8 21 190-210 15-35 (132)
215 PTZ00382 Variant-specific surf 25.3 32 0.00069 24.1 0.7 11 201-211 83-93 (96)
216 cd01617 DCX Ubiquitin-like dom 25.2 1.2E+02 0.0026 20.2 3.5 50 21-71 24-78 (80)
217 PRK15348 type III secretion sy 25.1 1.4E+02 0.003 24.9 4.5 28 176-203 209-236 (249)
218 PF13044 DUF3904: Protein of u 25.0 71 0.0015 26.7 2.7 27 129-155 319-345 (436)
219 PRK05593 rplR 50S ribosomal pr 24.9 1.7E+02 0.0037 21.3 4.4 51 4-54 36-100 (117)
220 COG1459 PulF Type II secretory 24.6 5.1E+02 0.011 23.1 9.7 20 146-165 129-148 (397)
221 PF08858 IDEAL: IDEAL domain; 24.6 1.4E+02 0.0031 16.8 3.2 18 137-154 10-27 (37)
222 PF05527 DUF758: Domain of unk 24.5 1.9E+02 0.0041 23.0 4.9 78 68-153 108-185 (186)
223 PF13721 SecD-TM1: SecD export 24.5 49 0.0011 23.4 1.5 20 181-203 3-22 (101)
224 PF01034 Syndecan: Syndecan do 24.2 27 0.00058 22.6 0.1 17 190-206 11-27 (64)
225 COG5122 TRS23 Transport protei 24.0 2.9E+02 0.0063 20.1 12.6 82 31-116 45-132 (134)
226 PLN03223 Polycystin cation cha 23.9 4.6E+02 0.01 27.7 8.4 37 125-161 1588-1624(1634)
227 PF13172 PepSY_TM_1: PepSY-ass 23.8 1.4E+02 0.003 16.3 3.8 14 182-195 3-16 (34)
228 smart00831 Cation_ATPase_N Cat 23.7 1.8E+02 0.004 17.9 4.1 7 183-189 39-45 (64)
229 PF14662 CCDC155: Coiled-coil 23.5 3.9E+02 0.0084 21.4 6.9 29 153-181 67-95 (193)
230 TIGR01478 STEVOR variant surfa 23.3 40 0.00087 28.6 1.0 7 183-189 163-169 (295)
231 COG5325 t-SNARE complex subuni 23.3 2.5E+02 0.0055 23.8 5.6 21 164-184 231-251 (283)
232 TIGR02338 gimC_beta prefoldin, 23.0 2.8E+02 0.0061 19.6 5.4 39 130-171 61-99 (110)
233 PLN00064 photosystem II protei 22.9 3.6E+02 0.0079 20.9 7.0 71 73-152 90-165 (166)
234 PRK12430 putative bifunctional 22.5 1.7E+02 0.0036 25.9 4.6 38 156-193 104-141 (379)
235 PF03839 Sec62: Translocation 22.3 1.3E+02 0.0028 24.7 3.7 12 201-212 162-173 (224)
236 PF04155 Ground-like: Ground-l 22.1 1.4E+02 0.003 19.6 3.3 12 136-147 10-21 (76)
237 PRK15471 chain length determin 21.9 1.5E+02 0.0032 25.7 4.3 16 182-197 25-40 (325)
238 PF08374 Protocadherin: Protoc 21.7 22 0.00049 28.8 -0.8 9 191-199 41-49 (221)
239 COG3808 OVP1 Inorganic pyropho 21.7 3.7E+02 0.0081 25.2 6.7 46 146-202 25-70 (703)
240 PF05823 Gp-FAR-1: Nematode fa 21.5 3.7E+02 0.0081 20.4 6.4 68 108-185 26-94 (154)
241 PF10436 BCDHK_Adom3: Mitochon 21.4 3.5E+02 0.0077 20.7 5.9 15 105-119 82-96 (164)
242 PF05399 EVI2A: Ectropic viral 21.2 89 0.0019 25.3 2.5 35 170-204 114-149 (227)
243 PF13040 DUF3901: Protein of u 21.2 1.5E+02 0.0033 17.2 2.9 26 138-163 9-34 (40)
244 PF05803 Chordopox_L2: Chordop 21.2 1.3E+02 0.0028 20.8 3.0 17 182-198 60-76 (87)
245 PF01099 Uteroglobin: Uteroglo 21.2 99 0.0021 19.9 2.4 42 109-150 17-59 (67)
246 PHA02681 ORF089 virion membran 21.2 1.2E+02 0.0025 20.8 2.7 14 192-205 10-23 (92)
247 KOG2881 Predicted membrane pro 20.9 3.3E+02 0.0072 23.0 5.8 56 131-193 160-218 (294)
248 KOG0964 Structural maintenance 20.6 8.2E+02 0.018 24.9 9.1 64 125-188 411-476 (1200)
249 KOG3220 Similar to bacterial d 20.6 4.8E+02 0.01 21.3 6.5 57 106-165 135-191 (225)
250 PF00523 Fusion_gly: Fusion gl 20.6 79 0.0017 29.1 2.4 17 124-141 431-447 (490)
251 PF07897 DUF1675: Protein of u 20.4 1E+02 0.0022 26.2 2.9 26 48-73 238-263 (284)
252 COG1723 Uncharacterized conser 20.2 2.5E+02 0.0054 24.4 5.1 68 144-213 264-331 (331)
253 PF11694 DUF3290: Protein of u 20.2 1.8E+02 0.0039 22.1 4.0 11 187-197 17-27 (149)
254 PF08946 Osmo_CC: Osmosensory 20.2 1.5E+02 0.0033 17.7 2.7 8 136-143 5-12 (46)
255 PF13163 DUF3999: Protein of u 20.2 88 0.0019 28.2 2.6 22 185-206 406-427 (429)
256 PF12277 DUF3618: Protein of u 20.1 2.1E+02 0.0046 17.1 5.3 27 127-153 5-31 (49)
257 PTZ00370 STEVOR; Provisional 20.1 53 0.0011 27.9 1.1 20 125-144 102-121 (296)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-69 Score=412.61 Aligned_cols=216 Identities=50% Similarity=0.919 Sum_probs=212.1
Q ss_pred CceEEEEEEcCCeEEEeecCCCCChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 027705 1 MAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYL 80 (220)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 80 (220)
|+|+|+.||||++|||||++.+|||.+++.++|+|+|+++++|.++..|+|.|||+.+||++|+|++|++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 89999999999999999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHH
Q 027705 81 EDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVD 160 (220)
Q Consensus 81 ~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ 160 (220)
++|++.|.+.||....++.+|+++.+|.+.|++.|+.|.++|+.|++.+++.+++|++++|.||||++++|||+||.|+|
T Consensus 81 e~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 027705 161 KTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAAACGGITLP 216 (220)
Q Consensus 161 ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~~cgg~~~~ 216 (220)
||++|+.+|..|++++++++|+|||+|.|+.+++++++++++|+|+...||||++|
T Consensus 161 KTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~ 216 (217)
T KOG0859|consen 161 KTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCP 216 (217)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999665
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-36 Score=236.39 Aligned_cols=192 Identities=26% Similarity=0.513 Sum_probs=174.5
Q ss_pred eEEEEEEc--CCeEEEeecC---CCCCh----HHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCc
Q 027705 3 ILYALVAR--GTVVLAEFSA---VTGNT----GAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGR 73 (220)
Q Consensus 3 I~Ya~Iar--~~~iLae~~~---~~~~~----~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~ 73 (220)
|++++|+| |+.|||.-.+ ++++. .+.++.+++++.+.+++|.+++.|.|.|||++++|++|+++||.+||+
T Consensus 2 i~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP~ 81 (216)
T KOG0862|consen 2 ILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYPR 81 (216)
T ss_pred ceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCcH
Confidence 78999999 9999996433 34433 457999999999987999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCc--ccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHh
Q 027705 74 RIPFSYLEDIQMRFMKNYGRVA--HYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILER 151 (220)
Q Consensus 74 ~~af~fL~ei~~~f~~~~~~~~--~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~R 151 (220)
++||.||+++.++|.+.|+... +..+||++ .+|++.|++..+.||+++..+.+.++.+++.+++.+|.+||+.++.|
T Consensus 82 kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~r 160 (216)
T KOG0862|consen 82 KLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQR 160 (216)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 9999999999999999998543 45789999 69999999999999999889999999999999999999999999999
Q ss_pred ccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHH
Q 027705 152 GDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLT 195 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~ 195 (220)
||.|+.|...+.+|+..|+.++++|+.++++..|.+|..++.++
T Consensus 161 g~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~ 204 (216)
T KOG0862|consen 161 GEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFF 204 (216)
T ss_pred chHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988444333
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-32 Score=206.64 Aligned_cols=176 Identities=22% Similarity=0.367 Sum_probs=149.1
Q ss_pred CceEEEEEEc-C---CeEEEeecC-------CCCChHH----HHHHHhhhCCCCCCCceEEEeCCEEEEEEEe-CCEEEE
Q 027705 1 MAILYALVAR-G---TVVLAEFSA-------VTGNTGA----VARRIIEKLPAESDSRVCFSQDRYIFHILRS-DGLTFL 64 (220)
Q Consensus 1 M~I~Ya~Iar-~---~~iLae~~~-------~~~~~~~----~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~-~~~~~~ 64 (220)
|.|++.+|-+ | ..+|+.-++ +-++..+ +++.+.+|.+| ..|++++++.|..|.... ||++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~--g~rqsvk~~~Y~~h~yvrndgL~~V 78 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP--GQRQSVKHEEYLVHVYVRNDGLCGV 78 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc--ccccccccceeEEEEEEecCCeeEE
Confidence 8899999988 3 355664332 1223333 57888999999 599999999999998776 599999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhc-CCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHH
Q 027705 65 CMANDTFGRRIPFSYLEDIQMRFMKNY-GRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVE 143 (220)
Q Consensus 65 ~i~d~~~~~~~af~fL~ei~~~f~~~~-~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ 143 (220)
+++|.+||.|+||.+|+++.++|.... +.+|+...+..+ . -|.|..++.+|+||.++|++.++|+++||+|.||.+
T Consensus 79 ~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~--~-~~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhk 155 (198)
T KOG0861|consen 79 LIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADL--S-YPYLDTLLSKYQDPAEADPLLKVQNELDETKIILHK 155 (198)
T ss_pred EEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCC--C-chhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997655 467774333222 2 378999999999999999999999999999999999
Q ss_pred hHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027705 144 NIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 144 ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
.|+.+|+|||+||+|++||++|+.+|+.|+++|++.++
T Consensus 156 TiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 156 TIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred HHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999998774
No 4
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-29 Score=179.76 Aligned_cols=89 Identities=37% Similarity=0.659 Sum_probs=83.8
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027705 122 PSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLL 201 (220)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~i 201 (220)
+.++++.++|+++++|.+||++||+|+|||||+|++|++||+.|+.+|..|+++|.+++|+|||+|.|+.++++++++++
T Consensus 26 ~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~ 105 (116)
T KOG0860|consen 26 TANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIIL 105 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHh
Q 027705 202 LYIIIAAAC 210 (220)
Q Consensus 202 l~~i~~~~c 210 (220)
+++|++++-
T Consensus 106 l~iiii~~~ 114 (116)
T KOG0860|consen 106 LVVIIIYIF 114 (116)
T ss_pred HHHHHHHHh
Confidence 888777653
No 5
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=4e-29 Score=175.69 Aligned_cols=88 Identities=40% Similarity=0.795 Sum_probs=85.0
Q ss_pred chhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027705 124 ADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
+|++.++++++++|+++|.+|++++++|||+|++|+++|++|+.+|..|+++|++++|++||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 027705 204 IIIAAACG 211 (220)
Q Consensus 204 ~i~~~~cg 211 (220)
+|++++||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999997
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.2e-25 Score=174.36 Aligned_cols=182 Identities=20% Similarity=0.371 Sum_probs=148.9
Q ss_pred CceEEEEEEcCC--eEEEe-ecCCCCCh--HHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeC-CEEEEEEecCCCCcc
Q 027705 1 MAILYALVARGT--VVLAE-FSAVTGNT--GAVARRIIEKLPAESDSRVCFSQDRYIFHILRSD-GLTFLCMANDTFGRR 74 (220)
Q Consensus 1 M~I~Ya~Iar~~--~iLae-~~~~~~~~--~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~-~~~~~~i~d~~~~~~ 74 (220)
|+++|..+..+. .+|++ ++..+..| ...+..+|.++.|...++..++.++|.|||+..+ |++|+|+++++||.+
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~ 80 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK 80 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence 567777777753 45554 33344444 3468888888887656688899999999998764 999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCC-cc-cCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhc
Q 027705 75 IPFSYLEDIQMRFMKNYGRV-AH-YAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERG 152 (220)
Q Consensus 75 ~af~fL~ei~~~f~~~~~~~-~~-~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rg 152 (220)
+|+..++++..+|......+ +. +..++.. .+|++.+++ .|+++...|++.+++.++++++.+|.+||+++++||
T Consensus 81 la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~---~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ 156 (190)
T COG5143 81 LAYGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK---GYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRD 156 (190)
T ss_pred hhhHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh---hcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999998877533 32 2333333 355555555 399999999999999999999999999999999999
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQSKRLRRALWMK 186 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~ 186 (220)
|+|+.|+++|..|..+|+.|+++|++.++.+||+
T Consensus 157 ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 157 EKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 9999999999999999999999999999999994
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.80 E-value=5.8e-19 Score=122.36 Aligned_cols=81 Identities=31% Similarity=0.837 Sum_probs=72.9
Q ss_pred HHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC-CCcccCCCcccchh
Q 027705 28 VARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYG-RVAHYAPAYAMNDE 106 (220)
Q Consensus 28 ~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~-~~~~~~~~~~~~~~ 106 (220)
+|+++|+++++.+++|.+++.|+|.||++++||++|+|+||++||.++||.||++|+++|..+|+ .++.++.||++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 58999999997634899999999999999999999999999999999999999999999999998 67888889999 78
Q ss_pred HHH
Q 027705 107 FSR 109 (220)
Q Consensus 107 F~~ 109 (220)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 876
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.00012 Score=57.46 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=70.8
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
+...++...++++.+|..|+++.++||++...+.|+.++|+.+.+.+++-+.+...++|||.-|+-..++....+..-.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999999999999999999999999999999999999999999998888877655544333
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.98 E-value=0.018 Score=39.93 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=51.2
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYI 204 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~ 204 (220)
+++..+++.+.+.-+.+.++=+++-+=.++-+.|.+.|+..+.+|...++....-+. +-+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~----k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNY----KLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHhHHhhhhhhhhHHHH
Confidence 345566666666666677777777777778888999999999999998866644333 3445555555555555544
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.90 E-value=0.037 Score=38.72 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=46.2
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHH----------HhHHHHHHHHHHHhhHHHHHHHHHH
Q 027705 129 RVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFR----------KQSKRLRRALWMKNAKLLALLTGLI 198 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~----------~~a~~l~r~~~~~~~k~~~ii~~iv 198 (220)
++-+.+..++..|.+.+++- ...++.|.+.|+.|......|. +--+++.|+.|.-++-+++.+++.+
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34556666677776665543 3455566666666654443332 2334667777777777777777777
Q ss_pred HHHHHHHH
Q 027705 199 VLLLYIII 206 (220)
Q Consensus 199 ~~il~~i~ 206 (220)
+.++||++
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 77777764
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.032 Score=47.42 Aligned_cols=71 Identities=7% Similarity=0.286 Sum_probs=41.6
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh---hhHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ---DGAFHFRKQSKRLRRALWMKNAKLLALLTGL 197 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~---~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~i 197 (220)
+.+.+++..+.++.++-.+==-.+...||-+|.++...++-. ..+..=-++|++..++. |++|+++||+++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka--RK~k~i~ii~~i 279 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA--RKWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhceeeeehHHH
Confidence 445667777777777666655566778888887776554433 34444445666666554 233444444433
No 12
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.049 Score=45.60 Aligned_cols=44 Identities=7% Similarity=0.249 Sum_probs=36.5
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDG 168 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~ 168 (220)
+.+.+++.++.||.+|+.+==.-+=+-|+.+|.+++.-++.+.+
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~n 223 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVN 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Confidence 55778899999999999887677788999999998888877653
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.077 Score=43.08 Aligned_cols=77 Identities=10% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh---hHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD---GAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~---~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
+.+++.-+.|+.+...+==+.+.++.|.+|.+.+..++-+. ++..-..+|.+-.|+..-+++.-|.|+++++|+|++
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~ 266 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVV 266 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHH
Confidence 44555556666665555556788999999988887776553 222333445555555555555555555444444443
No 14
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.46 E-value=1.1 Score=31.16 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=32.4
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh---hhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027705 128 NRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ---DGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 128 ~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~---~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
....+.+.+.-+-...|++.+.+.-+.|..+.+.=.++. ..|+..-+.-.+-.+.-.|-=+--.+++.++|+.|++
T Consensus 11 ~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 11 RRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444555555555555555444333332 1333333333322222222223445555555665554
No 15
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.17 E-value=0.13 Score=43.39 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=42.6
Q ss_pred HHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeC--CEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCC
Q 027705 26 GAVARRIIEKLPAESDSRVCFSQDRYIFHILRSD--GLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYGRV 94 (220)
Q Consensus 26 ~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~~~ 94 (220)
..+++.+|-.=. ....++++++|.+++..+| +++||+|-..-..-..+=.||+.|+..|...|+..
T Consensus 5 n~LI~~vlleeR---~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~ 72 (279)
T PF04086_consen 5 NALIRDVLLEER---SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ 72 (279)
T ss_dssp HHHHHHTGGG----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhheeec---cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence 345566553322 2345588999999998876 69999999999998888899999999999999743
No 16
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=93.49 E-value=1.4 Score=29.07 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=27.3
Q ss_pred ccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 152 GDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
.++++.|+..++.+....+.-..+-.+++-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4445555555555555545554444455544433 44466666666666555
No 17
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=93.39 E-value=0.15 Score=37.82 Aligned_cols=54 Identities=13% Similarity=0.299 Sum_probs=35.5
Q ss_pred HhhhCCCC---CCCceEEE-eCCEEEEEEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 027705 32 IIEKLPAE---SDSRVCFS-QDRYIFHILR---SDGLTFLCMANDTFGRRIPFSYLEDIQM 85 (220)
Q Consensus 32 il~~i~~~---~~~k~~~~-~~~~~~~~l~---~~~~~~~~i~d~~~~~~~af~fL~ei~~ 85 (220)
+++++.|- .-+|++.. .|||-.+|.. +++-+++|++..+.|+-++-..|.|++.
T Consensus 50 VlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 50 VLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp TGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred cccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 35666653 24455555 6899888877 3679999999999999999999999876
No 18
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=2.1 Score=38.84 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=64.3
Q ss_pred EEEEEEcCCeEEEeecCCCCChH----HHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeC--CEEEEEEecCCCCcccHH
Q 027705 4 LYALVARGTVVLAEFSAVTGNTG----AVARRIIEKLPAESDSRVCFSQDRYIFHILRSD--GLTFLCMANDTFGRRIPF 77 (220)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~~~~----~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af 77 (220)
.++.+.+|+.+|..|.....+|. .+++.+|-.-..+ --.++.+.|..-|-.++ +++|+|+-.+-..-..+-
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~~---~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~ 80 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERGG---VNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVD 80 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhcC---cccCchhheeEeeeecCCccEEEEEEEeccchhhhHH
Confidence 57888899999999988766664 4555555332221 12277788877776654 699999999888888888
Q ss_pred HHHHHHHHHHHhhcC
Q 027705 78 SYLEDIQMRFMKNYG 92 (220)
Q Consensus 78 ~fL~ei~~~f~~~~~ 92 (220)
.||+++.+.|...|.
T Consensus 81 ~ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 81 KLLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998884
No 19
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=90.83 E-value=1.2 Score=36.43 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=21.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 027705 181 RALWMKNAKLLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 181 r~~~~~~~k~~~ii~~iv~~il~~i~~~~c 210 (220)
|+..|+=|.+.++++++|++++|-.++++.
T Consensus 247 Rkkki~c~gI~~iii~viv~vv~~v~~~v~ 276 (280)
T COG5074 247 RKKKIRCYGICFIIIIVIVVVVFKVVPFVV 276 (280)
T ss_pred HhcceehhhhHHHHHHHHHHHHhcccchhh
Confidence 444466778888888888888876655544
No 20
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=90.77 E-value=7.9 Score=31.53 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 027705 190 LLALLTGLIVLLLYIIIAAACGG 212 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~~~~cgg 212 (220)
...+.+.++++++|+.++.+-|+
T Consensus 151 ~~gi~aml~Vf~LF~lvmt~g~d 173 (230)
T PF03904_consen 151 YKGIGAMLFVFMLFALVMTIGSD 173 (230)
T ss_pred HHhHHHHHHHHHHHHHHHHhccc
Confidence 34444555566666666655554
No 21
>PTZ00478 Sec superfamily; Provisional
Probab=90.49 E-value=1.2 Score=30.21 Aligned_cols=60 Identities=7% Similarity=0.085 Sum_probs=45.6
Q ss_pred HHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027705 147 KILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIII 206 (220)
Q Consensus 147 k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~ 206 (220)
.+.|..+.++.+.+...+.-.+|..|-+..+|=.|+-..+-.+...+..+++-++-|+|=
T Consensus 8 ~~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~IK 67 (81)
T PTZ00478 8 FLTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIK 67 (81)
T ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556667778888888888888998889888888888888877776666666666553
No 22
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=3.5 Score=35.20 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027705 133 EVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYI 204 (220)
Q Consensus 133 ~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~ 204 (220)
.+-+-++-|.++|+.-.+++. +....-++++ ..|..++++|++.++- -+++.+++++++++++
T Consensus 227 ~LVe~QgEmvd~IE~nV~~A~--~~V~~g~~~~-~kAv~~qkkaRK~k~i------~ii~~iii~~v~v~~i 289 (297)
T KOG0810|consen 227 VLVESQGEMVDRIENNVENAV--DYVEQGVDHL-KKAVKYQKKARKWKII------IIIILIIIIVVLVVVI 289 (297)
T ss_pred HHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHhhhceee------eehHHHHHHHHHhhhh
Confidence 344566777777776666652 2223334444 4567777666554433 3344444444444433
No 23
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=90.45 E-value=4.8 Score=39.19 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhCCCC
Q 027705 200 LLLYIIIAAACGGIT 214 (220)
Q Consensus 200 ~il~~i~~~~cgg~~ 214 (220)
++++.++...||...
T Consensus 427 Iv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 427 IVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHhhcc
Confidence 334445555665443
No 24
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=89.57 E-value=7.4 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=9.9
Q ss_pred hhhhhhhHHHHHHhHHHHHHH
Q 027705 162 TATMQDGAFHFRKQSKRLRRA 182 (220)
Q Consensus 162 s~~L~~~s~~f~~~a~~l~r~ 182 (220)
.+.+..+...+.+.+.+++..
T Consensus 201 ~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 201 EEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555443
No 25
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=89.32 E-value=3.5 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
+|||.+++|-|. .+|.-|++.-+++=|..
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 345566666655 46677888888887764
No 26
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=89.31 E-value=4.5 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=19.8
Q ss_pred ccchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 152 GDRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 152 ge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
.+|||.+++|-|. .+|.-+++.-+++=|..
T Consensus 18 ~~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 18 MKRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 3456666666665 45677788888887764
No 27
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=88.28 E-value=9.2 Score=28.83 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=47.6
Q ss_pred HHHhhhCCCC--------CCCceEEEeCCEEEEEEEe-CCEEEEEEecCCCCcccHHHHHHHHHHHHHhhc-CCCc-ccC
Q 027705 30 RRIIEKLPAE--------SDSRVCFSQDRYIFHILRS-DGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNY-GRVA-HYA 98 (220)
Q Consensus 30 ~~il~~i~~~--------~~~k~~~~~~~~~~~~l~~-~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~-~~~~-~~~ 98 (220)
+.+..++.|. ..+..+++.+.|..|++-. .|+-|+++||+..+. ..-.+++.+.+.|.... .+.. .-.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~ 124 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLE 124 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TT
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 4555666661 2456788999999998854 899999999999864 44556666666665422 2211 111
Q ss_pred CCcccchhHHHHHHHHHH
Q 027705 99 PAYAMNDEFSRVLHQQME 116 (220)
Q Consensus 99 ~~~~~~~~F~~~l~~~~~ 116 (220)
.|-. +..|+..|+++++
T Consensus 125 ~pI~-~~lF~~~l~~~~~ 141 (142)
T PF04099_consen 125 MPIR-CELFDTKLDQYVK 141 (142)
T ss_dssp S-----HHHHHHHHHHHH
T ss_pred CcEe-hHHHHHHHHHHHh
Confidence 2221 2467777776654
No 28
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=87.97 E-value=3.1 Score=26.72 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=37.6
Q ss_pred hHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027705 155 IELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIA 207 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~ 207 (220)
.+.+.+...++-.++..+-+.++|=.|+-.++..+...+..+++-++-|+|=+
T Consensus 3 ~~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 3 SNKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677788888888888888888888777776666666665543
No 29
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=87.63 E-value=8.2 Score=28.62 Aligned_cols=109 Identities=8% Similarity=0.116 Sum_probs=58.3
Q ss_pred EEEcCCeEEEeec--CCCCC--------hHH---HHHHHhhhCC-C-C--CCCceEEEeCCE-EEEEEEeCCEEEEEEec
Q 027705 7 LVARGTVVLAEFS--AVTGN--------TGA---VARRIIEKLP-A-E--SDSRVCFSQDRY-IFHILRSDGLTFLCMAN 68 (220)
Q Consensus 7 ~Iar~~~iLae~~--~~~~~--------~~~---~~~~il~~i~-~-~--~~~k~~~~~~~~-~~~~l~~~~~~~~~i~d 68 (220)
.|.+++.+|.+++ ..+.. ++- .+..+++... . . ..-+.....+++ .|.|+...++=|+.+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 3778888888764 33322 222 2344444221 2 1 012344556776 67787778899998888
Q ss_pred ---CCCCcccHHHHHHHHHHHHHhhcCCCcccC-CCcccchhHHHHHHHHHH
Q 027705 69 ---DTFGRRIPFSYLEDIQMRFMKNYGRVAHYA-PAYAMNDEFSRVLHQQME 116 (220)
Q Consensus 69 ---~~~~~~~af~fL~ei~~~f~~~~~~~~~~~-~~~~~~~~F~~~l~~~~~ 116 (220)
........-.|.+++++.|....-+..-.. .+-. ...|...++.+.+
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~-S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIK-SPKFDSRVRALAK 131 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHH-HHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcC-CHHHHHHHHHHhc
Confidence 345566688999999999887654332211 1111 1467777777665
No 30
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=87.36 E-value=5.3 Score=26.16 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=19.0
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
+|||.+++|-|. .+|.-|++.-+++=|..
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 345566666555 45677888888887763
No 31
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.23 E-value=14 Score=29.82 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=14.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 179 LRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 179 l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
+.|++.-.++-.++||++.++++++++
T Consensus 189 M~RR~~~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 189 MTRRLIRNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444
No 32
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=10 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027705 148 ILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALW 184 (220)
Q Consensus 148 ~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
+=+=++|-|.|.+-|+..+..|...++.-=..+-||+
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556677888999999999999866655555543
No 33
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=0.68 Score=45.93 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=36.8
Q ss_pred HhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHH
Q 027705 143 ENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMK 186 (220)
Q Consensus 143 ~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~ 186 (220)
.--+.+.+|||+|+.++++|++|+.++++|...|.++.-++-.+
T Consensus 945 ~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~k 988 (993)
T KOG1983|consen 945 GALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVK 988 (993)
T ss_pred hcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhh
Confidence 34568899999999999999999999999998888776555443
No 34
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=6.4 Score=34.08 Aligned_cols=85 Identities=19% Similarity=0.350 Sum_probs=59.8
Q ss_pred EEEEEcCCeEEEee-c-CCCCChHHHHHH-HhhhCCCCCCCc-eEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 027705 5 YALVARGTVVLAEF-S-AVTGNTGAVARR-IIEKLPAESDSR-VCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYL 80 (220)
Q Consensus 5 Ya~Iar~~~iLae~-~-~~~~~~~~~~~~-il~~i~~~~~~k-~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 80 (220)
|..=.||.++++.. . +-.++..++.+- ++... +.| -..+.|+-.||+...+++-.++||..+......|.||
T Consensus 6 fi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~----d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl 81 (446)
T KOG0938|consen 6 FIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNL----DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFL 81 (446)
T ss_pred EEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhcc----ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHH
Confidence 44445678888753 2 234455444332 22221 233 2356899999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 027705 81 EDIQMRFMKNYGR 93 (220)
Q Consensus 81 ~ei~~~f~~~~~~ 93 (220)
.++...+..-++.
T Consensus 82 ~kl~avm~aYfgk 94 (446)
T KOG0938|consen 82 YKLDAVMNAYFGK 94 (446)
T ss_pred HHHHHHHHHHhcc
Confidence 9999988887773
No 35
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=84.09 E-value=15 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=42.3
Q ss_pred ceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 027705 43 RVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYG 92 (220)
Q Consensus 43 k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~ 92 (220)
--.+.++++.+-|...+++.++++++.+...-....||..+.+.+..-++
T Consensus 47 ~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 47 SPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp TSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 34577899988888889999999999999988888999888888877665
No 36
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=83.58 E-value=16 Score=30.75 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=35.3
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhh----hhhhhHHHHHHhHHHHHHHHHH
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTA----TMQDGAFHFRKQSKRLRRALWM 185 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~----~L~~~s~~f~~~a~~l~r~~~~ 185 (220)
.+.++..-|.|+..|..+==.-+.+-|+-++.+.-.-+ +|+..++...+.-..-||.-.|
T Consensus 196 eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 196 EIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 34556666677777776666677888887777655444 4444555555444444444333
No 37
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.51 E-value=3.8 Score=29.70 Aligned_cols=74 Identities=5% Similarity=0.180 Sum_probs=32.9
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHH----HHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELL----VDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVL 200 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L----~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~ 200 (220)
..+..++++|.-.|..-.+--+++-....-||.+ ..-+.-|+.+-..|+.=|++-.++.| .|.+++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHH
Confidence 4455667777666665443322222222222222 22333444455555555555333333 34455544444
Q ss_pred HHH
Q 027705 201 LLY 203 (220)
Q Consensus 201 il~ 203 (220)
+++
T Consensus 111 fi~ 113 (118)
T KOG3385|consen 111 FIL 113 (118)
T ss_pred HHh
Confidence 443
No 38
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=83.45 E-value=0.42 Score=36.27 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 027705 174 KQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 174 ~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~~c 210 (220)
+.-.+.||...| |+..+|+++||.++.+|++.+|
T Consensus 122 kKEae~kr~K~C---ki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 122 KKEAELKRSKVC---KIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHheEEEEEEEE
Confidence 334455555444 7777778888888878877777
No 39
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.19 E-value=18 Score=29.78 Aligned_cols=26 Identities=4% Similarity=0.193 Sum_probs=14.5
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHHHh
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKILER 151 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l~R 151 (220)
-+.+.|+++-+=++...++|.+-+.|
T Consensus 138 ~~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 138 EIVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566655566666666555444
No 40
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=80.79 E-value=3.7 Score=28.64 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhh
Q 027705 176 SKRLRRALWMKNA 188 (220)
Q Consensus 176 a~~l~r~~~~~~~ 188 (220)
.|+.||+..|++.
T Consensus 5 ~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 5 LKKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
No 41
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=80.71 E-value=19 Score=32.30 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHH
Q 027705 105 DEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIE 146 (220)
Q Consensus 105 ~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~ 146 (220)
.+|...+.+..+..++ .++-+..+.++++.+...+...++
T Consensus 105 ~~~h~gV~~t~~si~~--an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 105 DETHDGVVQLTYSLRN--ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred HHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445445544443321 234445566666666666655544
No 42
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=80.64 E-value=8 Score=24.65 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 027705 187 NAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 187 ~~k~~~ii~~iv~~il~~i 205 (220)
+.++++.+++++++++|++
T Consensus 37 ~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 43
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=79.56 E-value=28 Score=28.96 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 107 FSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 107 F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+.+++.+..|+ +|+..++.-+++..+...+--+.--.+..+++++..+-+.++.
T Consensus 179 l~~~i~~~L~~~~-----~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 179 LAEAIRDDLNDYN-----AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSE 234 (264)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 5566666666655555554444444445555555555555544
No 44
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=79.29 E-value=16 Score=28.55 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRK 174 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~ 174 (220)
...+..+|++++.-|.+.|+++-+.-++||.+..++..|...+..+..
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988888888888777777666655543
No 45
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=78.31 E-value=20 Score=29.65 Aligned_cols=16 Identities=6% Similarity=0.193 Sum_probs=8.1
Q ss_pred HHHhhhhhhhhHHHHH
Q 027705 158 LVDKTATMQDGAFHFR 173 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~ 173 (220)
+......|...+....
T Consensus 204 ~d~n~~~l~~~~~rl~ 219 (251)
T PF09753_consen 204 LDRNLSSLKRESKRLK 219 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 46
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=77.97 E-value=21 Score=24.96 Aligned_cols=21 Identities=0% Similarity=0.121 Sum_probs=12.8
Q ss_pred HHHHHhhHHHHHHHHHHhHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEK 147 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k 147 (220)
+..-+...+++.+-|..++|+
T Consensus 30 Ik~gq~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 30 IKDGQHDQELVNQKLDRTLDE 50 (98)
T ss_pred HHHhHhhHHHHHHHHHhhHHH
Confidence 333455566666667777776
No 47
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=77.79 E-value=28 Score=26.40 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=31.0
Q ss_pred cCCCCcccHHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHH-HHHhhHHHHHHHHHHhHH
Q 027705 68 NDTFGRRIPFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLN-RVRGEVSEIRTIMVENIE 146 (220)
Q Consensus 68 d~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~-~~~~~v~~v~~im~~ni~ 146 (220)
+++-|-=+.....+.+.++..+... .....|...+.....++.+. ...|-. -+..-+...++-|.+.+.
T Consensus 21 ~~DDPILil~TiNe~ll~~~~~aq~---------~~l~~fk~elE~~~~~w~~d-ak~kAEkiL~aal~~ske~m~~~l~ 90 (144)
T PF11657_consen 21 SRDDPILILQTINERLLEDSAKAQQ---------EQLDQFKEELEEIASRWGED-AKEKAEKILNAALAASKEAMNKILQ 90 (144)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444433221 01146667777766666432 223332 223334444444444433
No 48
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=76.26 E-value=36 Score=33.28 Aligned_cols=44 Identities=18% Similarity=0.417 Sum_probs=28.4
Q ss_pred hHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhC
Q 027705 168 GAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAAACG 211 (220)
Q Consensus 168 ~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~~cg 211 (220)
.++.|.....+--.-.|.-..-+-.++.+|+++.++..+.+.||
T Consensus 398 ~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 398 SSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44445444444444445555555556667888888888889998
No 49
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.03 E-value=35 Score=26.56 Aligned_cols=11 Identities=9% Similarity=0.449 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 027705 78 SYLEDIQMRFM 88 (220)
Q Consensus 78 ~fL~ei~~~f~ 88 (220)
.||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 56666666553
No 50
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=75.42 E-value=11 Score=24.17 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=31.6
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027705 163 ATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIA 207 (220)
Q Consensus 163 ~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~ 207 (220)
.+.-.++..+-+.+++=.|+..++..+...+..+++-++-|+|=+
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikl 51 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKI 51 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777778888888888888888777766666665555543
No 51
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.80 E-value=13 Score=24.01 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=30.2
Q ss_pred hHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027705 155 IELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIII 206 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~ 206 (220)
++.+.+-+.+...+|..|.++-++=-||-+-+-.+-..+..+++-++-|++=
T Consensus 4 ~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~vK 55 (67)
T KOG3498|consen 4 VDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFVK 55 (67)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666666667666666655555555555555543
No 52
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=73.80 E-value=7.8 Score=26.99 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 027705 178 RLRRALWMKNAKLLALLTGL 197 (220)
Q Consensus 178 ~l~r~~~~~~~k~~~ii~~i 197 (220)
-+||..|+..++.+++..++
T Consensus 4 i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35666777777777665544
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.65 E-value=46 Score=26.83 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=8.9
Q ss_pred hccchHHHHHhhhhhhhhHH
Q 027705 151 RGDRIELLVDKTATMQDGAF 170 (220)
Q Consensus 151 Rge~l~~L~~ks~~L~~~s~ 170 (220)
+...+++|.+.-+.|+.+-.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555544333
No 54
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.18 E-value=70 Score=28.89 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=27.2
Q ss_pred CceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccH
Q 027705 42 SRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIP 76 (220)
Q Consensus 42 ~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~a 76 (220)
+...++.+.+.|-|-.-|.+-++.||.+.+..-..
T Consensus 45 qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleD 79 (512)
T KOG2635|consen 45 QHTFVETDSVRYVYQPLDNLYIVLITTKQSNILED 79 (512)
T ss_pred CccEEecccEEEEEEecccEEEEEEeccccchhhH
Confidence 44567788888888777999999999998875333
No 55
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=71.58 E-value=30 Score=27.13 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=57.8
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHH
Q 027705 62 TFLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIM 141 (220)
Q Consensus 62 ~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im 141 (220)
+|.|++-+- .......|++.+..++.+...+....... .-.--|...++--+.--+++.. .+-+.++-.+|
T Consensus 65 IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~-~W~LAl~~a~~~~Iql~e~~~~-------~~~vk~L~~~m 135 (174)
T PF04510_consen 65 IFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVE-DWVLALTGAVCMAIQLLESSMR-------VDLVKELLPKM 135 (174)
T ss_pred HHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHH-HHHHHHHHHHHHHHHHhccccH-------HHHHHHHHHHH
Confidence 355555333 33445567777777777766432111100 0001233333333322222211 23356666779
Q ss_pred HHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHh
Q 027705 142 VENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 187 (220)
Q Consensus 142 ~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~ 187 (220)
.+.+.++++||...+-+..-=++ =.+-++|.++|=+
T Consensus 136 v~Sv~elV~~g~E~~~l~rgl~~----------~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 136 VKSVKELVERGMEVGFLRRGLRD----------FESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH----------HHHHHHHHHHHhh
Confidence 99999999999887776654433 3456777777644
No 56
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=71.32 E-value=9 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=13.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~iv~~il~ 203 (220)
+.|.||...-+.+.+++++.+|
T Consensus 17 qkwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688887766655555554444
No 57
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=70.95 E-value=18 Score=22.98 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=5.4
Q ss_pred hhhHHHHHH
Q 027705 166 QDGAFHFRK 174 (220)
Q Consensus 166 ~~~s~~f~~ 174 (220)
++.|..|.+
T Consensus 8 nETA~~FL~ 16 (60)
T PF06072_consen 8 NETATEFLR 16 (60)
T ss_pred cccHHHHHH
Confidence 356677763
No 58
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=70.89 E-value=8.3 Score=29.21 Aligned_cols=24 Identities=13% Similarity=0.427 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 027705 187 NAKLLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 187 ~~k~~~ii~~iv~~il~~i~~~~c 210 (220)
.+.++++++++|.++++++.+..|
T Consensus 29 thm~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666677
No 59
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=70.76 E-value=27 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=18.1
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
++||++++|-+. ..+.-|++--+++-|..
T Consensus 22 kRLdeieekvef--~~~Ev~Qr~GkkiGRDI 50 (75)
T COG4064 22 KRLDEIEEKVEF--VNGEVYQRIGKKIGRDI 50 (75)
T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHHhcchH
Confidence 345566666554 34567777777777663
No 60
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.57 E-value=72 Score=27.39 Aligned_cols=62 Identities=18% Similarity=0.358 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHhhHHH---HHHHHHHhHHHHHHhccchHHHHH----hhhhhhhhHHHH
Q 027705 106 EFSRVLHQQMEFFSSNPSADTLNRVRGEVSE---IRTIMVENIEKILERGDRIELLVD----KTATMQDGAFHF 172 (220)
Q Consensus 106 ~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~---v~~im~~ni~k~l~Rge~l~~L~~----ks~~L~~~s~~f 172 (220)
-|....+.+...+|+ .-|.+.+++..+-| .+++|. +++++-.++||.+.+ -++++++.-...
T Consensus 215 ~~E~En~~l~~~~n~--~~devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~~~~~teNIk~gNe~i 283 (316)
T KOG3894|consen 215 LLETENQRLLNELNE--LLDEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDLQSGATENIKDGNEEI 283 (316)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 455666777777753 23555666655544 455554 467778888888777 344554443333
No 61
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.23 E-value=58 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=18.1
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHH
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKIL 149 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l 149 (220)
...+++.+++.+++-+.+-|+++-
T Consensus 81 ~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 81 ENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888887653
No 62
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.56 E-value=85 Score=26.70 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=26.7
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhcc---chHHHHHhhhhhhhhH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGD---RIELLVDKTATMQDGA 169 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge---~l~~L~~ks~~L~~~s 169 (220)
..+..++..+.|+=+|+.+=-..+=+-|| +||+.++.++-.-+.|
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA 274 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGA 274 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHH
Confidence 44566777777887777765555555554 4555555555443333
No 63
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=65.26 E-value=1e+02 Score=27.54 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=4.1
Q ss_pred HhhHHHHHHH
Q 027705 186 KNAKLLALLT 195 (220)
Q Consensus 186 ~~~k~~~ii~ 195 (220)
..|||...++
T Consensus 182 E~yRw~~~~~ 191 (406)
T PF04906_consen 182 EYYRWLAYLG 191 (406)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 64
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.86 E-value=58 Score=27.43 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=11.4
Q ss_pred hhHHHHHHhHHHHHHHHHHH
Q 027705 167 DGAFHFRKQSKRLRRALWMK 186 (220)
Q Consensus 167 ~~s~~f~~~a~~l~r~~~~~ 186 (220)
..+..-...+..|++.+..+
T Consensus 219 ~a~~nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 219 NASVNVEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677766443
No 65
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=64.03 E-value=18 Score=27.78 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027705 189 KLLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 189 k~~~ii~~iv~~il~~i~~~~c 210 (220)
|+.++++++++.+|-+++...|
T Consensus 37 Ri~~~iSIisL~~l~v~LaL~l 58 (161)
T PHA02673 37 RLMAAIAIIVLAILVVILALAL 58 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544544444444444333
No 66
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=63.22 E-value=10 Score=25.88 Aligned_cols=9 Identities=11% Similarity=-0.282 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 027705 202 LYIIIAAAC 210 (220)
Q Consensus 202 l~~i~~~~c 210 (220)
++.+++++.
T Consensus 19 i~~~~~~~~ 27 (85)
T PF11337_consen 19 IIGIYYFFN 27 (85)
T ss_pred HHHHHHhhc
Confidence 334444443
No 67
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=61.19 E-value=6.3 Score=27.49 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 027705 187 NAKLLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 187 ~~k~~~ii~~iv~~il~~i~~~~c 210 (220)
.|++++..++-+++++++|.+..|
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHH
Confidence 355666666555555555656555
No 68
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=60.48 E-value=13 Score=36.68 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=29.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027705 167 DGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAA 208 (220)
Q Consensus 167 ~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~ 208 (220)
+.|..-..+-.|--+...|+.|+++++..+++++++++.+++
T Consensus 1049 dtsf~wl~sp~K~~~~i~W~~yr~~il~~l~ililll~l~~f 1090 (1105)
T KOG1326|consen 1049 DTSFLWLTSPCKSFKFILWHRYRWYILLLLLILILLLLLALF 1090 (1105)
T ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666677889999999999887666655544443
No 69
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=60.25 E-value=8.5 Score=23.13 Aligned_cols=25 Identities=28% Similarity=0.475 Sum_probs=14.8
Q ss_pred HhhHHHHHHH-HHHHHHHHHHHH-HHh
Q 027705 186 KNAKLLALLT-GLIVLLLYIIIA-AAC 210 (220)
Q Consensus 186 ~~~k~~~ii~-~iv~~il~~i~~-~~c 210 (220)
|+++|.++++ +++|+++|...+ ..|
T Consensus 2 kk~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 3456555544 556777776655 466
No 70
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=60.18 E-value=45 Score=27.21 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027705 158 LVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAAA 209 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~~ 209 (220)
+.+.++.|...|...++-+++-. -.|+ .|.+||++++.+|.-++++-+
T Consensus 192 ~D~N~~~L~~~Serve~y~ksk~-s~wf---~~~miI~v~~sFVsMiliiqi 239 (244)
T KOG2678|consen 192 IDVNSQGLMDVSERVEKYDKSKL-SYWF---YITMIIFVILSFVSMILIIQI 239 (244)
T ss_pred HhHHHHHHHhhhHHHHHHHHhhh-hHHH---HHHHHHHHHHHHHHHHHHHHH
No 71
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.43 E-value=97 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=8.4
Q ss_pred HHHHHHHH--HHHHHHHHHHH
Q 027705 189 KLLALLTG--LIVLLLYIIIA 207 (220)
Q Consensus 189 k~~~ii~~--iv~~il~~i~~ 207 (220)
|=.+|+++ .+|.+++++++
T Consensus 209 rdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 209 RDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 43444443 34444444443
No 72
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=59.42 E-value=1.1e+02 Score=27.39 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=58.1
Q ss_pred EEEcCCeEEEeecCCCC---ChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHH
Q 027705 7 LVARGTVVLAEFSAVTG---NTGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDI 83 (220)
Q Consensus 7 ~Iar~~~iLae~~~~~~---~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~ei 83 (220)
..+.-|+|+...-..+. .+-.+.+.++.-.....+.-..+..|+..|.++..+.+.++||+..+-|......-|+-+
T Consensus 16 IlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~l 95 (415)
T PF03164_consen 16 ILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYL 95 (415)
T ss_pred EECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHH
Confidence 44445677765332221 233455666655444324556788899999999999999999999988877777777777
Q ss_pred HHHHHhhcC
Q 027705 84 QMRFMKNYG 92 (220)
Q Consensus 84 ~~~f~~~~~ 92 (220)
.....+...
T Consensus 96 y~qils~lt 104 (415)
T PF03164_consen 96 YSQILSILT 104 (415)
T ss_pred HHHHHHhcc
Confidence 776665443
No 73
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.54 E-value=51 Score=26.44 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhHHHHHHhccchHHHHHhhh---hhhhhHHHHHHhHHHHHHHHHHHhhHHHH----HHHHHHHHHHHH
Q 027705 132 GEVSEIRTIMVENIEKILERGDRIELLVDKTA---TMQDGAFHFRKQSKRLRRALWMKNAKLLA----LLTGLIVLLLYI 204 (220)
Q Consensus 132 ~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~---~L~~~s~~f~~~a~~l~r~~~~~~~k~~~----ii~~iv~~il~~ 204 (220)
+++..+|..|.|==+-+++ +||.+-++.| =|-+.+...+.++...+++-.--+-++|. +-.+++++++++
T Consensus 125 d~lskvkaqv~evk~vM~e---NIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~ 201 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMME---NIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISL 201 (217)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHH
Confidence 3445555555554334444 4444444444 44467777787777666554322222222 223344444455
Q ss_pred HHHHHh
Q 027705 205 IIAAAC 210 (220)
Q Consensus 205 i~~~~c 210 (220)
|++.+-
T Consensus 202 iyiiv~ 207 (217)
T KOG0859|consen 202 IYIIVA 207 (217)
T ss_pred HHHHHH
Confidence 555444
No 74
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=58.42 E-value=7.6 Score=19.90 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 027705 197 LIVLLLYIII 206 (220)
Q Consensus 197 iv~~il~~i~ 206 (220)
+|++++.+|+
T Consensus 10 vVLFILLiIv 19 (24)
T PF09680_consen 10 VVLFILLIIV 19 (24)
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 75
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.48 E-value=60 Score=27.64 Aligned_cols=32 Identities=6% Similarity=0.282 Sum_probs=23.8
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHHHhccchHH
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKILERGDRIEL 157 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~ 157 (220)
-+.++-+-+.|+..|+.+==..+.+-|--+|.
T Consensus 219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDR 250 (305)
T KOG0809|consen 219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDR 250 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 35677777888888888877788888855554
No 76
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=57.10 E-value=48 Score=21.03 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=42.3
Q ss_pred chhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027705 124 ADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
.+.+.....-++++.++-.+.++.+-.-++.|....++..++...-..-.+--+++.|
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 3567778888888888888888888888888888888888776655444333333333
No 77
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=55.01 E-value=56 Score=21.23 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=19.7
Q ss_pred hHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 168 GAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 168 ~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
+...|.+-|+|=-|+-..+-.|...+..+++-++-|+|
T Consensus 17 e~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI 54 (65)
T COG2443 17 EYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFII 54 (65)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555555555565555444444443433
No 78
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=53.10 E-value=20 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027705 190 LLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~~~~c 210 (220)
+..|++++|++++-+++|.++
T Consensus 6 i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655555554
No 79
>PHA03011 hypothetical protein; Provisional
Probab=52.83 E-value=59 Score=23.03 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhh
Q 027705 106 EFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATM 165 (220)
Q Consensus 106 ~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L 165 (220)
.....+.++.-+||. -.|...-+..+..+...+..+|.|.+.--...+|.|.+.-.++
T Consensus 61 ai~e~ldeL~~qYN~--L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 61 AIIEILDELIAQYNE--LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 344566667777753 2355566778888888888888888776666677776665554
No 80
>COG1422 Predicted membrane protein [Function unknown]
Probab=52.45 E-value=1.2e+02 Score=24.32 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=35.4
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhc--cchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH-HH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERG--DRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIV-LL 201 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rg--e~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~-~i 201 (220)
.++.++|+..++.++-+. +.-++| ++|+.|+++=.++.+... .+.-..+|+.+.+.++.+ +.
T Consensus 72 ekm~~~qk~m~efq~e~~----eA~~~~d~~~lkkLq~~qmem~~~Q~-----------elmk~qfkPM~~~~v~tI~~F 136 (201)
T COG1422 72 EKMKELQKMMKEFQKEFR----EAQESGDMKKLKKLQEKQMEMMDDQR-----------ELMKMQFKPMLYISVLTIPFF 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhCCHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHH
Confidence 556666666666665543 333333 455566655555444333 333344565555554333 33
Q ss_pred HHHHHHHHhC
Q 027705 202 LYIIIAAACG 211 (220)
Q Consensus 202 l~~i~~~~cg 211 (220)
.|+.+...-|
T Consensus 137 ~Wl~~~~~~~ 146 (201)
T COG1422 137 AWLRWFVGTG 146 (201)
T ss_pred HHHHHHHccC
Confidence 3444443333
No 81
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=51.79 E-value=65 Score=22.95 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=19.5
Q ss_pred HHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027705 157 LLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVL 200 (220)
Q Consensus 157 ~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~ 200 (220)
.+.+-+++.+.+.+.| ++.-|++|...+++-+++.+
T Consensus 22 ~I~k~~~~~n~~kk~f--------kki~~KKyg~~~il~~l~~l 57 (104)
T PF12420_consen 22 YIDKLKKDPNIDKKKF--------KKIIFKKYGLIFILPFLVPL 57 (104)
T ss_pred HHHHHhhCCChhHHHH--------HHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444554 34457777776666655543
No 82
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=51.68 E-value=31 Score=23.42 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 027705 187 NAKLLALLTGLIVLLLYIIIAA 208 (220)
Q Consensus 187 ~~k~~~ii~~iv~~il~~i~~~ 208 (220)
+.|-.+|+.++|++++.+|+..
T Consensus 32 ~lKrlliivvVvVlvVvvivg~ 53 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIVGA 53 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHHHH
Confidence 5566666666666555555543
No 83
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=50.87 E-value=59 Score=20.20 Aligned_cols=42 Identities=12% Similarity=0.333 Sum_probs=31.5
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
+.+..+...+.+++++..+==+.+-+-++-|+.|.+..+.-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 457788888888888776655677777788888887776544
No 84
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=50.85 E-value=28 Score=32.49 Aligned_cols=21 Identities=10% Similarity=0.495 Sum_probs=17.9
Q ss_pred chhHHHHHhhHHHHHHHHHHh
Q 027705 124 ADTLNRVRGEVSEIRTIMVEN 144 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~n 144 (220)
.+.+..++++++.+.++..+|
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qn 461 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQN 461 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 467888999999999988888
No 85
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=50.71 E-value=2e+02 Score=26.55 Aligned_cols=20 Identities=5% Similarity=0.275 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHhHHHHHHh
Q 027705 132 GEVSEIRTIMVENIEKILER 151 (220)
Q Consensus 132 ~~v~~v~~im~~ni~k~l~R 151 (220)
.+.+++.....+.+...++.
T Consensus 68 ~~~~~~~~~w~~~~~~~~~~ 87 (569)
T PRK10600 68 AQLQALQDYWRNELKPALQQ 87 (569)
T ss_pred HHHHHHHHHHHHhhhHHhhc
Confidence 44444555444555555444
No 86
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=50.56 E-value=18 Score=31.97 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=19.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027705 180 RRALWMKNAKLLALLTGLIVLLLYIIIAAA 209 (220)
Q Consensus 180 ~r~~~~~~~k~~~ii~~iv~~il~~i~~~~ 209 (220)
+++-||.++...+++.+++++++..++.++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv 323 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGFV 323 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 456799999988777766655554444333
No 87
>PHA02557 22 prohead core protein; Provisional
Probab=50.21 E-value=54 Score=27.47 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhc-CCC--cchhHHHHHhhHHHHHHHHHHhHHHHHHhc
Q 027705 76 PFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFS-SNP--SADTLNRVRGEVSEIRTIMVENIEKILERG 152 (220)
Q Consensus 76 af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn-~~~--~~dkl~~~~~~v~~v~~im~~ni~k~l~Rg 152 (220)
+-.||+.+.++|.....-.........+..+|-.-|+.+....| .-| ..|-+..+.+++++...-...-+++..++.
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999987664222222222344566666777765553 222 356778888888888887777777776666
Q ss_pred cchHH------HHHhhhhhhh
Q 027705 153 DRIEL------LVDKTATMQD 167 (220)
Q Consensus 153 e~l~~------L~~ks~~L~~ 167 (220)
+.++. +.+.|.+|.+
T Consensus 169 e~i~~~~r~~i~~e~t~gLtd 189 (271)
T PHA02557 169 EYINEVKREVILSEVTKDLTE 189 (271)
T ss_pred HHHHHHHHHHHHHHHHcchhH
Confidence 65554 3445555554
No 88
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=48.80 E-value=66 Score=29.78 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCCCCCCCC
Q 027705 201 LLYIIIAAACGGITLPSCR 219 (220)
Q Consensus 201 il~~i~~~~cgg~~~~~C~ 219 (220)
||+.+++++-.|+-|++|.
T Consensus 488 VLLAaLlSfLtg~~fq~~v 506 (538)
T PF05781_consen 488 VLLAALLSFLTGLFFQRCV 506 (538)
T ss_pred HHHHHHHHHHhcccccchh
Confidence 4444445555567788873
No 89
>PF14992 TMCO5: TMCO5 family
Probab=48.33 E-value=1.7e+02 Score=24.81 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 027705 178 RLRRALWMKNAKLLALLTGL 197 (220)
Q Consensus 178 ~l~r~~~~~~~k~~~ii~~i 197 (220)
+-.+..|.+.++++++.+++
T Consensus 208 ~~~~~~wkr~lr~l~f~vL~ 227 (280)
T PF14992_consen 208 KNSPTFWKRALRLLFFMVLF 227 (280)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 34467777777875444433
No 90
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=47.34 E-value=27 Score=22.01 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEE--eCCEEEEEEecCC
Q 027705 22 TGNTGAVARRIIEKLPAESDSRVCFSQDRYIFHILR--SDGLTFLCMANDT 70 (220)
Q Consensus 22 ~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~--~~~~~~~~i~d~~ 70 (220)
-.+|+.+-..+-+++.....-|..++.+|...+-+. .+|-.|+|...+.
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 357888888888888764357788888887665443 3888999986553
No 91
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=47.19 E-value=91 Score=24.01 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 027705 177 KRLRRALWMKN 187 (220)
Q Consensus 177 ~~l~r~~~~~~ 187 (220)
.+++.-.-|+.
T Consensus 83 ERl~allsWrd 93 (156)
T PF08372_consen 83 ERLQALLSWRD 93 (156)
T ss_pred HHHHHhhccCC
Confidence 34444445543
No 92
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=46.99 E-value=42 Score=25.52 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhcC-CCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccc
Q 027705 106 EFSRVLHQQMEFFSS-NPSADTLNRVRGEVSEIRTIMVENIEKILERGDR 154 (220)
Q Consensus 106 ~F~~~l~~~~~~yn~-~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~ 154 (220)
.|.+.++++...-+. .|....+.....+++.-+.-..+-+.++|++|+.
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 345555544332221 1334445555555555543344445555555543
No 93
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=46.82 E-value=17 Score=19.01 Aligned_cols=10 Identities=20% Similarity=0.856 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 027705 197 LIVLLLYIII 206 (220)
Q Consensus 197 iv~~il~~i~ 206 (220)
+|++|+.+|+
T Consensus 12 vVLFILLIIi 21 (26)
T TIGR01732 12 VVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHh
Confidence 3334444443
No 94
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=45.88 E-value=34 Score=22.71 Aligned_cols=8 Identities=0% Similarity=0.638 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 027705 134 VSEIRTIM 141 (220)
Q Consensus 134 v~~v~~im 141 (220)
++.|+.+|
T Consensus 24 i~vVksVl 31 (72)
T PF12575_consen 24 INVVKSVL 31 (72)
T ss_pred HHHHHHHH
Confidence 44444443
No 95
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=45.86 E-value=50 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=11.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~~i 205 (220)
|...++.-++.+.|++++-++
T Consensus 11 y~tLrigGLi~A~vlfi~Gi~ 31 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLFILGIL 31 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHHHHHHHH
Confidence 455665555555555554433
No 96
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=45.62 E-value=32 Score=23.86 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHhcC
Q 027705 105 DEFSRVLHQQMEFFSS 120 (220)
Q Consensus 105 ~~F~~~l~~~~~~yn~ 120 (220)
..+...++++......
T Consensus 29 ~~l~~~~~~~~~~l~~ 44 (124)
T PF00482_consen 29 GPLREELQKIRRRLRN 44 (124)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3455666666655543
No 97
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=45.49 E-value=12 Score=33.23 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCCC
Q 027705 200 LLLYIIIAAACGGI 213 (220)
Q Consensus 200 ~il~~i~~~~cgg~ 213 (220)
||-|+-||++|.|-
T Consensus 383 lvGfLcWwf~crgk 396 (397)
T PF03302_consen 383 LVGFLCWWFICRGK 396 (397)
T ss_pred HHHHHhhheeeccc
Confidence 34588999999873
No 98
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=44.99 E-value=1.8e+02 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=20.6
Q ss_pred HhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh
Q 027705 131 RGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
+...++.+.....+.+++-++.++++..+++.++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaq 53 (306)
T PF04888_consen 18 KSKKEQIERASEAQEKKAEEKAEEIEEAQEKAEEAQ 53 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455667777777777776665543
No 99
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.73 E-value=99 Score=24.99 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhHHHHHHhccchHHHHHhhhh
Q 027705 132 GEVSEIRTIMVENIEKILERGDRIELLVDKTAT 164 (220)
Q Consensus 132 ~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~ 164 (220)
..++|+-+-..+++.=+-+|+|.+.++.++|++
T Consensus 144 rrLed~~~sI~~e~~YLr~REeemr~~nesTNs 176 (210)
T KOG1691|consen 144 RRLEDLVESIHEEMYYLREREEEMRNTNESTNS 176 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 556777777778888888888888777666543
No 100
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=44.38 E-value=78 Score=26.07 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=36.0
Q ss_pred ceEEEEEEcCCeEEEeecCCCCChHHHHHHHhhhCCCCCCCceEEEeCCEEE
Q 027705 2 AILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRVCFSQDRYIF 53 (220)
Q Consensus 2 ~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~ 53 (220)
||-|+.|+.-...+..+...-..+-+++..++..-.. +.+..++.|+|.|
T Consensus 30 ~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSe--N~Kyayeg~nYHw 79 (249)
T PF11675_consen 30 PIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESE--NIKYAYEGGNYHW 79 (249)
T ss_pred ceeEEeccCceEEEeecCccchhHHHHHHHHHhcccc--ccceeeeCCceEE
Confidence 5788888876666655555556678889999987666 4677777777765
No 101
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=43.74 E-value=82 Score=24.99 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHHHH--hHHHHHHhccchHHHHHhhhhhh
Q 027705 130 VRGEVSEIRTIMVE--NIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 130 ~~~~v~~v~~im~~--ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
.|-+++.++.+|++ |-+.++||-=.=.+|.++-++|+
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE 59 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLE 59 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHh
Confidence 45567777888877 77888877544444444444444
No 102
>PRK13664 hypothetical protein; Provisional
Probab=43.42 E-value=47 Score=20.96 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=10.5
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 027705 184 WMKNAKLLALLTGLIVLLL 202 (220)
Q Consensus 184 ~~~~~k~~~ii~~iv~~il 202 (220)
|...|.+++++.+.|-+++
T Consensus 3 WLadyWWilill~lvG~i~ 21 (62)
T PRK13664 3 WLAKYWWILVLVFLVGVLL 21 (62)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6666776655554444443
No 103
>PF15339 Afaf: Acrosome formation-associated factor
Probab=42.51 E-value=46 Score=26.04 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=13.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHh
Q 027705 189 KLLALLTG-LIVLLLYIIIAAAC 210 (220)
Q Consensus 189 k~~~ii~~-iv~~il~~i~~~~c 210 (220)
|+.+++++ +.-+++|++++++|
T Consensus 129 KlkLmLGIsLmTl~lfv~Ll~~c 151 (200)
T PF15339_consen 129 KLKLMLGISLMTLFLFVILLAFC 151 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 45567777778888
No 104
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=42.19 E-value=33 Score=22.85 Aligned_cols=18 Identities=33% Similarity=0.933 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027705 193 LLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 193 ii~~iv~~il~~i~~~~c 210 (220)
++++++++++.+++..+|
T Consensus 6 ~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhheeEEEE
Confidence 334444444444445555
No 105
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.83 E-value=1.9e+02 Score=23.59 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=41.3
Q ss_pred HHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Q 027705 140 IMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKR-----LRRALWMKNAKLLALLTGLIVLLLYIIIAAACGG 212 (220)
Q Consensus 140 im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~-----l~r~~~~~~~k~~~ii~~iv~~il~~i~~~~cgg 212 (220)
.+..+++.+.++-+++..-..++..++.-+..+..+=+. ..|--||.-.-..++|++.++-+.++--++.-++
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~ 227 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS 227 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence 344456666666666666666777776666655533332 3344588777666665555554444444444443
No 106
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.63 E-value=1.3e+02 Score=21.92 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=9.5
Q ss_pred HHHHHH-HHHHHHHHHHHHH
Q 027705 190 LLALLT-GLIVLLLYIIIAA 208 (220)
Q Consensus 190 ~~~ii~-~iv~~il~~i~~~ 208 (220)
..+..- .+.+++.++|+++
T Consensus 96 ~~l~~~m~~f~lV~~fi~~~ 115 (118)
T KOG3385|consen 96 ISLLCWMAVFSLVAFFILWV 115 (118)
T ss_pred cchHHHHHHHHHHHHHHhhe
Confidence 334433 3555555666654
No 107
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.53 E-value=1.4e+02 Score=27.91 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHh----cCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHH
Q 027705 106 EFSRVLHQQMEFF----SSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFR 173 (220)
Q Consensus 106 ~F~~~l~~~~~~y----n~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~ 173 (220)
++...+++.-.+| .+-++.+++...++++++++.-=.+|...+.++-+.++.|....+......+.|+
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443344 3556778889999999998884345666777888888877776666554444444
No 108
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=40.19 E-value=48 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Q 027705 191 LALLTGLIVLLLYIIIAAACGGITL 215 (220)
Q Consensus 191 ~~ii~~iv~~il~~i~~~~cgg~~~ 215 (220)
.++++++|++|++.||+.-=..=+|
T Consensus 266 lvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444555666677778765444444
No 109
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.81 E-value=1.7e+02 Score=22.24 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=11.7
Q ss_pred CCcchhHHHHHhhHHHHHHH
Q 027705 121 NPSADTLNRVRGEVSEIRTI 140 (220)
Q Consensus 121 ~~~~dkl~~~~~~v~~v~~i 140 (220)
++...++.++..|+.+++.-
T Consensus 85 ~pD~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 85 PPDSSKINAVAKEMENLRQS 104 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 34455566666666666653
No 110
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.72 E-value=1.2e+02 Score=25.18 Aligned_cols=52 Identities=8% Similarity=0.152 Sum_probs=22.3
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHH
Q 027705 128 NRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRL 179 (220)
Q Consensus 128 ~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l 179 (220)
..+..+++..+.-...+..+.-......+.+..++++|.............+
T Consensus 55 ~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 55 ESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444434333334444444444444444444444444333
No 111
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.66 E-value=1e+02 Score=27.24 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 027705 49 DRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYG 92 (220)
Q Consensus 49 ~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~ 92 (220)
..|.++-...+++.+++++.-+.|.-.++.||..|.+-|..-++
T Consensus 53 p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 53 PHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred CceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 34444444567888888888889988999999999999988776
No 112
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=39.54 E-value=1.1e+02 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=18.9
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhH
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQS 176 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a 176 (220)
.++|.+.++-.+++..|..|+=++
T Consensus 42 ~e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 42 CEFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889988888887443
No 113
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=39.26 E-value=1.3e+02 Score=20.67 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHhHHHHH
Q 027705 132 GEVSEIRTIMVENIEKIL 149 (220)
Q Consensus 132 ~~v~~v~~im~~ni~k~l 149 (220)
...+++++-+.+.++.+-
T Consensus 27 ~~~~~~r~~~~~~~~~a~ 44 (94)
T PF05957_consen 27 EKADEARDRAEEALDDAR 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 114
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=38.92 E-value=1e+02 Score=21.48 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred hhhhhhHHHHHHhHHHHHHHH----HHHhhHHHHHHHHH
Q 027705 163 ATMQDGAFHFRKQSKRLRRAL----WMKNAKLLALLTGL 197 (220)
Q Consensus 163 ~~L~~~s~~f~~~a~~l~r~~----~~~~~k~~~ii~~i 197 (220)
++|.-.-+.|.+++.+.++.. .-+|||-.+-.+++
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i 66 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGI 66 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 445555667777776665543 44566654444433
No 115
>COG4327 Predicted membrane protein [Function unknown]
Probab=38.85 E-value=65 Score=22.50 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027705 175 QSKRLRRALWMKNAKLLALLTGLIVLLLYIII 206 (220)
Q Consensus 175 ~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~ 206 (220)
.+....+..|..|..++.++.+|=.++-|+++
T Consensus 5 ~~~~~a~aywranttli~~lL~vwflVSfvvi 36 (101)
T COG4327 5 DAEHPARAYWRANTTLIAALLGVWFLVSFVVI 36 (101)
T ss_pred ccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455677788888887776665555445443
No 116
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=38.83 E-value=93 Score=19.04 Aligned_cols=44 Identities=14% Similarity=0.383 Sum_probs=30.8
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDG 168 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~ 168 (220)
+.+..+...+.+++++..+=-..+-+-++.|+.+.+..++....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677788888888876654456666777888887776665443
No 117
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=38.80 E-value=1.2e+02 Score=24.54 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Q 027705 142 VENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGL 197 (220)
Q Consensus 142 ~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~i 197 (220)
.+.++|++.-|..+.+|+.|...|=..-..--|.-|+.---...+--|+|..|+=|
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI 61 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEI 61 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999977666655555555455678888888877654
No 118
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=38.72 E-value=1.8e+02 Score=22.44 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=7.6
Q ss_pred hHHHHHHhccchHHHHHh
Q 027705 144 NIEKILERGDRIELLVDK 161 (220)
Q Consensus 144 ni~k~l~Rge~l~~L~~k 161 (220)
-++.-.+.|+.-|+..+.
T Consensus 32 ~f~d~~~~G~sEeeii~~ 49 (181)
T PF08006_consen 32 YFDDAGEEGKSEEEIIAE 49 (181)
T ss_pred HHHHhhhCCCCHHHHHHH
Confidence 344444444444444433
No 119
>PHA01811 hypothetical protein
Probab=38.58 E-value=44 Score=21.54 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=15.6
Q ss_pred CCceEEEeCCEEEEEEEeC
Q 027705 41 DSRVCFSQDRYIFHILRSD 59 (220)
Q Consensus 41 ~~k~~~~~~~~~~~~l~~~ 59 (220)
+.-.++...||.+||+-++
T Consensus 4 ddivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDD 22 (78)
T ss_pred ccEEEEEEeeEEEEEEcCc
Confidence 5567888999999998764
No 120
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=38.21 E-value=76 Score=18.08 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 027705 189 KLLALLTGLIVLLL 202 (220)
Q Consensus 189 k~~~ii~~iv~~il 202 (220)
|-|++.+++.+++.
T Consensus 14 r~Wi~F~l~mi~vF 27 (38)
T PF09125_consen 14 RGWIAFALAMILVF 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 34445444444333
No 121
>PTZ00370 STEVOR; Provisional
Probab=38.16 E-value=41 Score=28.57 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Q 027705 191 LALLTGLIVLLLYIIIAAACGGITL 215 (220)
Q Consensus 191 ~~ii~~iv~~il~~i~~~~cgg~~~ 215 (220)
.++++++|++|++.||+.-=..-+|
T Consensus 262 lvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3444455666667777754333333
No 122
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=1.2e+02 Score=24.33 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHhHHHHHHhccc
Q 027705 132 GEVSEIRTIMVENIEKILERGDR 154 (220)
Q Consensus 132 ~~v~~v~~im~~ni~k~l~Rge~ 154 (220)
+.++-..+.|.++||..|+..|.
T Consensus 133 e~Mdm~~Emm~daIDdal~~~ed 155 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDED 155 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccch
Confidence 45666778899999999965433
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.80 E-value=80 Score=23.16 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCC-CcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh
Q 027705 108 SRVLHQQMEFFSSN-PSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 108 ~~~l~~~~~~yn~~-~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
...|-+++..-... .....+..++.++.+.+.--...++-+-++.|.++.|...-.+|+
T Consensus 50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 50 REEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34455555443211 123556677777887777666677777777777777777777764
No 124
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.44 E-value=3.3e+02 Score=25.05 Aligned_cols=53 Identities=9% Similarity=0.285 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
++.++.+.++ +.+-|..+.+=.+.++.|.+|=..|+..+..|...-..++.|+
T Consensus 273 i~~lk~~n~~----l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 273 IANLKTQNDN----LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444444444 3344566666778889999999999999999998888887776
No 125
>COG5547 Small integral membrane protein [Function unknown]
Probab=37.19 E-value=52 Score=20.83 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=8.6
Q ss_pred HHHhhHHHHHHHHH
Q 027705 184 WMKNAKLLALLTGL 197 (220)
Q Consensus 184 ~~~~~k~~~ii~~i 197 (220)
|.+.+|+-+|.+++
T Consensus 3 flk~fkypIIgglv 16 (62)
T COG5547 3 FLKKFKYPIIGGLV 16 (62)
T ss_pred HHHHhccchHHHHH
Confidence 56677766665544
No 126
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=36.99 E-value=1.7e+02 Score=21.48 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=42.4
Q ss_pred EEEEcCCeEEEeecCCCCChHH----------HHHHHhhhCCCCCCCceEEE-eCCEEEEEEEeCCEEEEEEecCCCCc
Q 027705 6 ALVARGTVVLAEFSAVTGNTGA----------VARRIIEKLPAESDSRVCFS-QDRYIFHILRSDGLTFLCMANDTFGR 73 (220)
Q Consensus 6 a~Iar~~~iLae~~~~~~~~~~----------~~~~il~~i~~~~~~k~~~~-~~~~~~~~l~~~~~~~~~i~d~~~~~ 73 (220)
..|+.|+.+.+...+.+.+-+. .+....+++...+-....++ ..++.+-+-..++.+++.++++...-
T Consensus 23 ~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~~l~~g~leqi~I~g~~g~i~l~~~g~~~il~~~a~~~~nL 101 (119)
T COG2018 23 LVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAADELGGGELEQIMIEGKKGKILLYDAGDDAILVVLADEGTNL 101 (119)
T ss_pred EEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHHHhCCCCceEEEEeccccEEEEEEcCCceEEEEEcCCCCcc
Confidence 3455689999988766655322 23555566666422223333 23666656566789999999987653
No 127
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=36.94 E-value=35 Score=23.55 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 027705 202 LYIIIAAAC 210 (220)
Q Consensus 202 l~~i~~~~c 210 (220)
+.+|.+++|
T Consensus 46 l~VilwfvC 54 (94)
T PF05393_consen 46 LLVILWFVC 54 (94)
T ss_pred HHHHHHHHH
Confidence 334445555
No 128
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=36.59 E-value=63 Score=18.21 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=7.0
Q ss_pred HHHHhhHHHHHHHHHH
Q 027705 183 LWMKNAKLLALLTGLI 198 (220)
Q Consensus 183 ~~~~~~k~~~ii~~iv 198 (220)
.+.+-.++..++.+++
T Consensus 3 ~~~~~H~W~Gl~~g~~ 18 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLL 18 (37)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445544444433
No 129
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=36.14 E-value=10 Score=35.29 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=0.6
Q ss_pred hhHHHHHHHHHHHh
Q 027705 105 DEFSRVLHQQMEFF 118 (220)
Q Consensus 105 ~~F~~~l~~~~~~y 118 (220)
.+|.+++.++.+.+
T Consensus 480 iDfnkel~e~~~n~ 493 (610)
T PF01601_consen 480 IDFNKELDEIFKNL 493 (610)
T ss_dssp -------------S
T ss_pred CChHHHHHHHHHhc
Confidence 35666666666665
No 130
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.77 E-value=2.2e+02 Score=22.46 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=47.4
Q ss_pred CCceEEEeCCEEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC--CCccc-CCCcccchhHHHHHHHHHH
Q 027705 41 DSRVCFSQDRYIFHILR-SDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYG--RVAHY-APAYAMNDEFSRVLHQQME 116 (220)
Q Consensus 41 ~~k~~~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~--~~~~~-~~~~~~~~~F~~~l~~~~~ 116 (220)
.+...++.+.+..|+.- -.|+-|++++++.. ..|=.+|+.+...|.. |. +..-+ ..|-. ..-|++.|+.+.+
T Consensus 121 SGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsD-yvlKNPfYSlEMPIR-c~lFDe~lk~~le 196 (199)
T KOG3369|consen 121 SGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSD-YVLKNPFYSLEMPIR-CELFDEKLKFLLE 196 (199)
T ss_pred CceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHH-HhhcCCccCccccee-HHHhhHHHHHHHh
Confidence 46677888999888775 48999999999887 4566788888877754 42 11111 11111 1467777776654
No 131
>PHA03049 IMV membrane protein; Provisional
Probab=35.16 E-value=49 Score=21.52 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 027705 196 GLIVLLLYII 205 (220)
Q Consensus 196 ~iv~~il~~i 205 (220)
+|+.+|+|.|
T Consensus 13 aIi~lIvYgi 22 (68)
T PHA03049 13 VIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 132
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.87 E-value=2.7e+02 Score=27.03 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHHHhccch
Q 027705 138 RTIMVENIEKILERGDRI 155 (220)
Q Consensus 138 ~~im~~ni~k~l~Rge~l 155 (220)
.+-+.+.++.+.+|.+.|
T Consensus 595 ae~LaeR~e~a~d~Qe~L 612 (717)
T PF10168_consen 595 AEKLAERYEEAKDKQEKL 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455566666555443
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.79 E-value=60 Score=23.89 Aligned_cols=8 Identities=13% Similarity=0.621 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027705 192 ALLTGLIV 199 (220)
Q Consensus 192 ~ii~~iv~ 199 (220)
.|++++++
T Consensus 68 ~Ii~gv~a 75 (122)
T PF01102_consen 68 GIIFGVMA 75 (122)
T ss_dssp HHHHHHHH
T ss_pred ehhHHHHH
Confidence 33333333
No 134
>PRK06041 flagellar assembly protein J; Reviewed
Probab=34.59 E-value=3.9e+02 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=26.3
Q ss_pred HhHHHHHHhccchHH-HHHhhhhhhhhHHHHHHhH
Q 027705 143 ENIEKILERGDRIEL-LVDKTATMQDGAFHFRKQS 176 (220)
Q Consensus 143 ~ni~k~l~Rge~l~~-L~~ks~~L~~~s~~f~~~a 176 (220)
+++-..++.|+.+++ |.++++.+.++....++++
T Consensus 148 ~~l~~~i~sG~~l~~fL~~e~~~~~~~~~~~~~~~ 182 (553)
T PRK06041 148 DRLAYSIDSGEPLKEFLKQEQDTVMEDYKTFYERA 182 (553)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567888998888 8888998888877766555
No 135
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.56 E-value=1.5e+02 Score=20.07 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.2
Q ss_pred HHHHHhhHHHHHH
Q 027705 127 LNRVRGEVSEIRT 139 (220)
Q Consensus 127 l~~~~~~v~~v~~ 139 (220)
+..++++++++..
T Consensus 35 i~~l~~~~~~i~~ 47 (90)
T PF06103_consen 35 IDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHhHHHHHH
Confidence 3444555555443
No 136
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=34.52 E-value=1.4e+02 Score=21.76 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=9.4
Q ss_pred HHHHHHhhHHHHHH
Q 027705 181 RALWMKNAKLLALL 194 (220)
Q Consensus 181 r~~~~~~~k~~~ii 194 (220)
++.++++|.++.+.
T Consensus 65 ~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 65 KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHHHhHHHHH
Confidence 66678888755543
No 137
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=34.45 E-value=87 Score=21.40 Aligned_cols=29 Identities=7% Similarity=0.256 Sum_probs=21.0
Q ss_pred hHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 155 IELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
||.|++|++.|...-..+..+.++.++.+
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888777777777777766654
No 138
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=34.21 E-value=1e+02 Score=22.44 Aligned_cols=51 Identities=35% Similarity=0.546 Sum_probs=29.8
Q ss_pred EEEEEEcC--CeEEEeecCC------CCChHH---HHHHHhhhCCCCCCCceEEEeCCEEEE
Q 027705 4 LYALVARG--TVVLAEFSAV------TGNTGA---VARRIIEKLPAESDSRVCFSQDRYIFH 54 (220)
Q Consensus 4 ~Ya~Iar~--~~iLae~~~~------~~~~~~---~~~~il~~i~~~~~~k~~~~~~~~~~~ 54 (220)
+|+.|..+ +.+||.-++. .+|.+. +...+-++.....-.+..++.++|.||
T Consensus 36 iyaQiIdd~~~~tlasaST~ek~~~~~~n~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~Yh 97 (114)
T TIGR00060 36 IYAQVIDDSKSEVLASASTLEKKLKYTGNKDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYH 97 (114)
T ss_pred EEEEEEECCCCEEEEEEecchhhhcCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcch
Confidence 68888874 5788865542 234432 223333333332145678888999997
No 139
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.07 E-value=1.4e+02 Score=20.18 Aligned_cols=23 Identities=4% Similarity=0.244 Sum_probs=8.7
Q ss_pred hHHHHHhhhhhhhhHHHHHHhHH
Q 027705 155 IELLVDKTATMQDGAFHFRKQSK 177 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~ 177 (220)
|..+..+-..++......++++.
T Consensus 66 L~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 66 LVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 140
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=34.04 E-value=35 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q 027705 188 AKLLALLTGLIVLLL 202 (220)
Q Consensus 188 ~k~~~ii~~iv~~il 202 (220)
.|+-++|.+||+.+|
T Consensus 126 ~K~amLIClIIIAVL 140 (227)
T PF05399_consen 126 NKMAMLICLIIIAVL 140 (227)
T ss_pred cchhHHHHHHHHHHH
Confidence 344444444333333
No 141
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=33.80 E-value=1.1e+02 Score=18.35 Aligned_cols=44 Identities=14% Similarity=0.367 Sum_probs=27.9
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDG 168 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~ 168 (220)
+.+..+...+.+++++..+==..+-+-|+.|+.+.+..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888876543344455567777777666655433
No 142
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=33.62 E-value=45 Score=25.39 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 027705 189 KLLALLTG 196 (220)
Q Consensus 189 k~~~ii~~ 196 (220)
|+++.+.+
T Consensus 120 klilaisv 127 (154)
T PF14914_consen 120 KLILAISV 127 (154)
T ss_pred hhHHHHHH
Confidence 44444433
No 143
>PHA03386 P10 fibrous body protein; Provisional
Probab=33.38 E-value=79 Score=22.02 Aligned_cols=15 Identities=0% Similarity=0.277 Sum_probs=10.7
Q ss_pred hhHHHHHhhHHHHHH
Q 027705 125 DTLNRVRGEVSEIRT 139 (220)
Q Consensus 125 dkl~~~~~~v~~v~~ 139 (220)
+|++.+|.+|++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 667777777777663
No 144
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.19 E-value=2.4e+02 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=4.7
Q ss_pred HHHhhHHHHHHHHHHhHH
Q 027705 129 RVRGEVSEIRTIMVENIE 146 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~ 146 (220)
++|++++.+-.-+..-+|
T Consensus 102 QVqqeL~~tf~rL~~~Vd 119 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVD 119 (171)
T ss_dssp --------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555544444444
No 145
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.91 E-value=51 Score=23.10 Aligned_cols=14 Identities=43% Similarity=0.453 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 027705 189 KLLALLTGLIVLLL 202 (220)
Q Consensus 189 k~~~ii~~iv~~il 202 (220)
|..++++++++++|
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444443333
No 146
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=32.57 E-value=66 Score=21.56 Aligned_cols=38 Identities=11% Similarity=0.338 Sum_probs=20.4
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
+|++.+|..|++++.- +..+-+=.+|||.+...-++|.
T Consensus 18 ~KVdaLq~~V~~l~~~----~~~v~~l~~klDa~~~~l~~l~ 55 (75)
T PF05531_consen 18 DKVDALQTQVDDLESN----LPDVTELNKKLDAQSAQLTTLN 55 (75)
T ss_pred HHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHHHH
Confidence 7778888888776643 3333333344444444444443
No 147
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=32.42 E-value=90 Score=25.14 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=30.5
Q ss_pred EEEEEEcC--CeEEEeecCCC----------------------CChH---HHHHHHhhhCCCCCCCceEEEeCCEEEEE
Q 027705 4 LYALVARG--TVVLAEFSAVT----------------------GNTG---AVARRIIEKLPAESDSRVCFSQDRYIFHI 55 (220)
Q Consensus 4 ~Ya~Iar~--~~iLae~~~~~----------------------~~~~---~~~~~il~~i~~~~~~k~~~~~~~~~~~~ 55 (220)
+||.|..| +.+||.-++.+ ++-+ .+.+.+.++.....-++.+++.+||.||=
T Consensus 117 IYAQIIDD~~~~TLasaSTlek~l~~~~~~~~~~~~n~~~~~g~nieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHG 195 (211)
T PTZ00032 117 MYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKAAYELGKLIGRKALSKGISKVRFDRAHYKYAG 195 (211)
T ss_pred EEEEEEECCCCCEEEEecCCCHHHHhhhcccccccccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehh
Confidence 68988885 47777655322 1221 12333333333322457889999999984
No 148
>PF15106 TMEM156: TMEM156 protein family
Probab=32.31 E-value=29 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027705 180 RRALWMKNAKLLALLTGLIVLLLYIIIAA 208 (220)
Q Consensus 180 ~r~~~~~~~k~~~ii~~iv~~il~~i~~~ 208 (220)
+.-+|--++.||+++.+|+++++.+|+--
T Consensus 168 kn~~CsmKITWYvLVllVfiflii~iI~K 196 (226)
T PF15106_consen 168 KNSTCSMKITWYVLVLLVFIFLIILIIYK 196 (226)
T ss_pred cCceeehhhHHHHHHHHHHHHHHHHHHHH
Confidence 34466667778887776666655555433
No 149
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=32.28 E-value=60 Score=22.93 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 170 FHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 170 ~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
..|.+.+=.....-.|||+.+.+...++.+++-++.
T Consensus 34 ~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~ 69 (103)
T PF06422_consen 34 DDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLA 69 (103)
T ss_pred HHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 445555555566678998887666555444433333
No 150
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.26 E-value=1.7e+02 Score=23.57 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHH-HHHH
Q 027705 170 FHFRKQSKRLRR-ALWM 185 (220)
Q Consensus 170 ~~f~~~a~~l~r-~~~~ 185 (220)
..|+..|...+. -|||
T Consensus 170 ~~FR~tSES~NsRvm~W 186 (215)
T KOG1690|consen 170 ETFRDTSESANSRVMWW 186 (215)
T ss_pred HHHHhhhhhhcceeeeh
Confidence 456666666554 4676
No 151
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=32.12 E-value=21 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.663 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027705 193 LLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 193 ii~~iv~~il~~i~~~~c 210 (220)
|+++||+++++|+++.+|
T Consensus 80 iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeehhhHHHHHHHhHhh
Confidence 334444445555555566
No 152
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.02 E-value=45 Score=28.52 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=4.5
Q ss_pred eEEEeec
Q 027705 13 VVLAEFS 19 (220)
Q Consensus 13 ~iLae~~ 19 (220)
..|||+-
T Consensus 19 R~LcECe 25 (299)
T PF02009_consen 19 RSLCECE 25 (299)
T ss_pred cchhhhc
Confidence 5677753
No 153
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=32.02 E-value=88 Score=20.70 Aligned_cols=25 Identities=32% Similarity=0.657 Sum_probs=15.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 027705 183 LWMKNAKLLALLTGLIVLLLYIIIA 207 (220)
Q Consensus 183 ~~~~~~k~~~ii~~iv~~il~~i~~ 207 (220)
.||+..|..++..+..++.-+.+.+
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~w 26 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAILW 26 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788777766655555555544
No 154
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=31.71 E-value=53 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=26.2
Q ss_pred HHHHHHHHHH----hhHHHHHHH--------------HHHHHHHHHHHHHHhCCCCC
Q 027705 177 KRLRRALWMK----NAKLLALLT--------------GLIVLLLYIIIAAACGGITL 215 (220)
Q Consensus 177 ~~l~r~~~~~----~~k~~~ii~--------------~iv~~il~~i~~~~cgg~~~ 215 (220)
....||.||+ ..|+++.++ +......+.|++.+|-||.+
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf~L 152 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGFAL 152 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4678999999 888888762 22333444666677777754
No 155
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=31.58 E-value=20 Score=24.84 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=19.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 027705 185 MKNAKLLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~~i~~~~c 210 (220)
|.++...+|+.++.++++|+.+.++-
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~fL 59 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWFL 59 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHHH
Confidence 66777777777777788888777654
No 156
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.34 E-value=83 Score=20.75 Aligned_cols=9 Identities=22% Similarity=0.216 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027705 196 GLIVLLLYI 204 (220)
Q Consensus 196 ~iv~~il~~ 204 (220)
+++++++.+
T Consensus 10 ivl~ll~G~ 18 (71)
T COG3763 10 IVLALLAGL 18 (71)
T ss_pred HHHHHHHHH
Confidence 333333333
No 157
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=2.9e+02 Score=22.45 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=33.5
Q ss_pred HhHHHHHHhcc-chHHHHHhhhhhhhhHHHHHHhHHH----------HHHHHHHHhhHHHHHHHHHHHHHH
Q 027705 143 ENIEKILERGD-RIELLVDKTATMQDGAFHFRKQSKR----------LRRALWMKNAKLLALLTGLIVLLL 202 (220)
Q Consensus 143 ~ni~k~l~Rge-~l~~L~~ks~~L~~~s~~f~~~a~~----------l~r~~~~~~~k~~~ii~~iv~~il 202 (220)
.-+|.+|++|- -+|+|+++-..|+..-+.+..-+.. ..|+ -+.=|+++++++|+|+|+
T Consensus 136 ~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR--~~~Dk~iF~~G~i~~~v~ 204 (213)
T KOG3251|consen 136 NMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERR--VREDKIIFYGGVILTLVI 204 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 34677788874 4577777777777666666543332 2222 123356666666655554
No 158
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=30.98 E-value=2.2e+02 Score=27.99 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=25.3
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccc-hHHHHHh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDR-IELLVDK 161 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~-l~~L~~k 161 (220)
|.+..+...++.+.+|...|+..+.+||+. ++.|.+|
T Consensus 328 ~qlp~vd~~~~gm~~V~~sei~~~~q~~~s~~n~l~~k 365 (865)
T KOG4331|consen 328 DQLPNVDAFLSGMPNVVTSEILQSVQRGNSLFNVLPDK 365 (865)
T ss_pred hhCCCchHHHhccccchHHHHHHHHHhhhhhhhhhhHH
Confidence 444555677777888888999999988843 3334433
No 159
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=30.92 E-value=2.2e+02 Score=21.40 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=28.0
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHHHh-ccchHHHHHhhhhhhhhHHHHH
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKILER-GDRIELLVDKTATMQDGAFHFR 173 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l~R-ge~l~~L~~ks~~L~~~s~~f~ 173 (220)
++..++.+++.+...|.+.|+.+-++ .+.+..|..+.+.|...-..|.
T Consensus 11 ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~ 59 (149)
T PF07352_consen 11 KIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYA 59 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777666443 3444555555555555444443
No 160
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.90 E-value=2.1e+02 Score=21.38 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=40.6
Q ss_pred HHHHhhhCCCC--CCCceEEEeCCEEEEEEEe-CCEEEEEEecCCCCcccHHHHHHHHHH
Q 027705 29 ARRIIEKLPAE--SDSRVCFSQDRYIFHILRS-DGLTFLCMANDTFGRRIPFSYLEDIQM 85 (220)
Q Consensus 29 ~~~il~~i~~~--~~~k~~~~~~~~~~~~l~~-~~~~~~~i~d~~~~~~~af~fL~ei~~ 85 (220)
.+.+..|+.|+ .++-.+++.+.|..|++-. .|+=++..||+.... .-..|+.|-.
T Consensus 45 lkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~~--ir~vLq~IYs 102 (140)
T KOG3368|consen 45 LKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAGS--IRDVLQYIYS 102 (140)
T ss_pred HHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCccc--HHHHHHHHHH
Confidence 46667788886 3566778889999998864 899999999987653 2344555555
No 161
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=30.83 E-value=2.8e+02 Score=22.58 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=12.0
Q ss_pred hccchHHHHHhhhhhhhhHHHH
Q 027705 151 RGDRIELLVDKTATMQDGAFHF 172 (220)
Q Consensus 151 Rge~l~~L~~ks~~L~~~s~~f 172 (220)
=++.|+.|+.+-+.+.-..+..
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~ 34 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKS 34 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555554443
No 162
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=30.75 E-value=51 Score=33.25 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 027705 192 ALLTGLIVLLLYIIIAAACGGI 213 (220)
Q Consensus 192 ~ii~~iv~~il~~i~~~~cgg~ 213 (220)
.++++++++.+++++++-||.|
T Consensus 984 svl~GLLlL~llv~~LwK~GFF 1005 (1030)
T KOG3637|consen 984 SVLGGLLLLALLVLLLWKCGFF 1005 (1030)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc
Confidence 3444566667777888999877
No 163
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.63 E-value=1.6e+02 Score=19.18 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027705 162 TATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLL 201 (220)
Q Consensus 162 s~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~i 201 (220)
..++..+=.....+.+.+.|- -+.+++.+++.++
T Consensus 36 i~~~~~~l~~I~~n~kW~~r~------iiGaiI~~i~~~i 69 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIWRT------IIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 344555555555555555552 3444444444444
No 164
>PHA03164 hypothetical protein; Provisional
Probab=30.59 E-value=1.1e+02 Score=20.52 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027705 190 LLALLTGLIVLLLYIIIA 207 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~~ 207 (220)
..++-++++..|+++|+.
T Consensus 60 FlvLtgLaIamILfiifv 77 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFV 77 (88)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444555555555543
No 165
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=30.37 E-value=65 Score=21.03 Aligned_cols=9 Identities=56% Similarity=0.800 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027705 197 LIVLLLYII 205 (220)
Q Consensus 197 iv~~il~~i 205 (220)
++.+|+|.+
T Consensus 14 ii~lIlY~i 22 (68)
T PF05961_consen 14 IIGLILYGI 22 (68)
T ss_pred HHHHHHHHH
Confidence 333344433
No 166
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.35 E-value=74 Score=19.52 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=7.2
Q ss_pred HHHHhhHHHHHH
Q 027705 183 LWMKNAKLLALL 194 (220)
Q Consensus 183 ~~~~~~k~~~ii 194 (220)
.+|+++|..++-
T Consensus 2 e~~~~~~~~iiG 13 (51)
T PF10031_consen 2 EFWKNHRGKIIG 13 (51)
T ss_pred hHHHHCcchHHH
Confidence 467777744443
No 167
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.99 E-value=3.2e+02 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=9.6
Q ss_pred cchhHHHHHhhHHHHHH
Q 027705 123 SADTLNRVRGEVSEIRT 139 (220)
Q Consensus 123 ~~dkl~~~~~~v~~v~~ 139 (220)
+.+-+.++++++.+++.
T Consensus 160 ~~~d~l~ie~~L~~v~~ 176 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRS 176 (262)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34445566666666554
No 168
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=29.98 E-value=80 Score=18.17 Aligned_cols=19 Identities=0% Similarity=-0.127 Sum_probs=12.2
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTGLIVL 200 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~iv~~ 200 (220)
+.++-+...|+++.++++.
T Consensus 18 ~eCCf~lq~Wv~v~l~v~~ 36 (38)
T PF10853_consen 18 KECCFRLQIWVIVLLAVLG 36 (38)
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 4566677777776665544
No 169
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.87 E-value=2.3e+02 Score=20.83 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHH
Q 027705 140 IMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRA 182 (220)
Q Consensus 140 im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
...+|-+.++..-..++.+..-.+.++.+-.....+..+++.+
T Consensus 52 ~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 52 QVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554445544444444444444443
No 170
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=29.82 E-value=57 Score=26.20 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=20.2
Q ss_pred HHHHhhHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCC
Q 027705 183 LWMKNAKLLAL-LTGLIVLLLYIIIAAACGGITLPSC 218 (220)
Q Consensus 183 ~~~~~~k~~~i-i~~iv~~il~~i~~~~cgg~~~~~C 218 (220)
|.|--|-++++ |.+++.+++|-|++.+|.-|+.--|
T Consensus 55 m~cipylifflki~l~~fi~~yri~lpi~~~fs~~~~ 91 (284)
T PF03317_consen 55 MLCIPYLIFFLKISLLRFIVFYRIVLPICNLFSLLTC 91 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333 3345556667788999977764333
No 171
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.82 E-value=3.1e+02 Score=22.34 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhc--------cchHHHHHhhh---hhhhhHHHHHHhHHHHHHHHHHHhhHHHHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERG--------DRIELLVDKTA---TMQDGAFHFRKQSKRLRRALWMKNAKLLALL 194 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rg--------e~l~~L~~ks~---~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii 194 (220)
|.+++..-.+++. .+|+.++.+-- ++|+++..+-+ .|+..+..+...|++-+.....=|.+....-
T Consensus 120 IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~ 196 (216)
T KOG0862|consen 120 IQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRK 196 (216)
T ss_pred HHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHH
Confidence 3566777777653 34444433222 45666655444 5556777787777666666555555544433
No 172
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.80 E-value=48 Score=22.58 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=15.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 027705 179 LRRALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 179 l~r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
.++|-+.||...|+-++..+++++.
T Consensus 2 INwKvR~kN~~~w~ali~~i~l~vq 26 (84)
T PF04531_consen 2 INWKVRFKNKAFWVALISAILLLVQ 26 (84)
T ss_pred CchhhcccCHHHHHHHHHHHHHHHH
Confidence 3556667777777766655555443
No 173
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=29.71 E-value=88 Score=22.19 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=8.6
Q ss_pred HHHHHhhHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTG 196 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~ 196 (220)
++.|+.++..+|+++
T Consensus 2 ~~~~~~~~~~ii~~~ 16 (103)
T PRK14125 2 KLKESKIHVSIFFVL 16 (103)
T ss_pred chHHHHHHHHHHHHH
Confidence 456777666554433
No 174
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=29.56 E-value=1.6e+02 Score=19.96 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=14.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Q 027705 180 RRALWMKNAKLLALLTGLIVLLLYI 204 (220)
Q Consensus 180 ~r~~~~~~~k~~~ii~~iv~~il~~ 204 (220)
++..|-+|.+++.++.++=.++-|+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg 27 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFG 27 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777766655443333333
No 175
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=29.55 E-value=74 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=14.9
Q ss_pred chhHHHHHhhHHHHHHHH
Q 027705 124 ADTLNRVRGEVSEIRTIM 141 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im 141 (220)
.+.+..++.+++.++.+|
T Consensus 229 e~eL~~iqaqL~tvks~m 246 (372)
T COG3524 229 EDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 366778889999999999
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.52 E-value=3.4e+02 Score=23.54 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=6.8
Q ss_pred HHHHHhCCCCC
Q 027705 205 IIAAACGGITL 215 (220)
Q Consensus 205 i~~~~cgg~~~ 215 (220)
.++.-||+|+.
T Consensus 319 a~isY~G~f~~ 329 (344)
T PF12777_consen 319 AFISYLGPFTP 329 (344)
T ss_dssp HHHHCCCCTSH
T ss_pred HHHHHcCCCCH
Confidence 33457888863
No 177
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=29.43 E-value=4.8e+02 Score=25.28 Aligned_cols=83 Identities=17% Similarity=0.326 Sum_probs=45.9
Q ss_pred CcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHh-ccchHHHHH---hhhhhhhhHHHHHHh
Q 027705 100 AYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILER-GDRIELLVD---KTATMQDGAFHFRKQ 175 (220)
Q Consensus 100 ~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~R-ge~l~~L~~---ks~~L~~~s~~f~~~ 175 (220)
+-++..+|...+++.+....+...+.=..++++++++|-.+....++.+-+- .+++..+.. .-+......+-|+..
T Consensus 651 eralk~q~~~~~~kkLq~~~~~h~a~cs~qi~~El~~vfa~l~r~v~~~~~~~~d~~~~~~~~le~lds~q~~~K~~~~k 730 (749)
T KOG0448|consen 651 ERALKVQFVNHLKKKLQEFDDSHTANCSHQIRQELRTVFAILCRTVDRVEEQMRDDLLATKKQLESLDSIQSRLKFFRSK 730 (749)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666665444444445667777777777666666543211 111222221 444555677788877
Q ss_pred HHHHHHH
Q 027705 176 SKRLRRA 182 (220)
Q Consensus 176 a~~l~r~ 182 (220)
|.++.+.
T Consensus 731 a~~l~~e 737 (749)
T KOG0448|consen 731 ALKLEYE 737 (749)
T ss_pred HHHHHHH
Confidence 8776665
No 178
>PLN03223 Polycystin cation channel protein; Provisional
Probab=29.41 E-value=88 Score=32.51 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=35.7
Q ss_pred chhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 124 ADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
.|.+.+.++.+-+++.-+.++--++++|++++.++++|-.+|..
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 35667778888888888899989999999999998888766643
No 179
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=29.37 E-value=1.1e+02 Score=19.12 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhH
Q 027705 129 RVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGA 169 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s 169 (220)
++|.+.+.+.+-+. .++=+=|.|||+|+..-.+|..++
T Consensus 14 qmq~kFq~mS~~I~---~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 14 QMQDKFQTMSDQIL---GRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 44444444333322 233344666777776666665544
No 180
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=29.27 E-value=2e+02 Score=23.08 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHHhhHHHHHHHHHHhHH
Q 027705 129 RVRGEVSEIRTIMVENIE 146 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~ 146 (220)
+-.++++...+...+-++
T Consensus 105 ~W~~~i~~~~~~i~~ll~ 122 (204)
T PF00517_consen 105 QWEKEISNYTGNIYNLLE 122 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHH
Confidence 344555554444333333
No 181
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.24 E-value=3e+02 Score=22.11 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=4.7
Q ss_pred HHHhhhhhhhhH
Q 027705 158 LVDKTATMQDGA 169 (220)
Q Consensus 158 L~~ks~~L~~~s 169 (220)
|.+.-+.++...
T Consensus 144 L~~~l~~~~~~~ 155 (206)
T PRK10884 144 LKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 182
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.19 E-value=2.2e+02 Score=20.50 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=19.4
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHh----ccchHHHHHhhhhhhhhHHHHH
Q 027705 128 NRVRGEVSEIRTIMVENIEKILER----GDRIELLVDKTATMQDGAFHFR 173 (220)
Q Consensus 128 ~~~~~~v~~v~~im~~ni~k~l~R----ge~l~~L~~ks~~L~~~s~~f~ 173 (220)
..++.+++++++=|.+.-++.-.. ..++|+|+++...|......++
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk 60 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLK 60 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433332111 1345555555555544444433
No 183
>COG4499 Predicted membrane protein [Function unknown]
Probab=29.02 E-value=56 Score=28.98 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHhhhCCCCCCCceEEEeCCEEEEEEE
Q 027705 28 VARRIIEKLPAESDSRVCFSQDRYIFHILR 57 (220)
Q Consensus 28 ~~~~il~~i~~~~~~k~~~~~~~~~~~~l~ 57 (220)
+-..+|++.+|.-+...+-..|++.+||-+
T Consensus 40 ~~~~lld~~~~f~~~eit~~~Ds~vIsy~i 69 (434)
T COG4499 40 LLAELLDKSPPFIVAEITEDNDSFVISYPI 69 (434)
T ss_pred HHHHHhccCCCccceeecccCceeEEEecC
Confidence 345566666553122233334566666644
No 184
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=28.50 E-value=1.4e+02 Score=20.50 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=4.9
Q ss_pred HHHHHhhHH
Q 027705 182 ALWMKNAKL 190 (220)
Q Consensus 182 ~~~~~~~k~ 190 (220)
+...|.+-+
T Consensus 30 ~sfirdFvL 38 (84)
T PF06143_consen 30 RSFIRDFVL 38 (84)
T ss_pred hHHHHHHHH
Confidence 345566665
No 185
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=28.31 E-value=79 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 027705 184 WMKNAKLLALLTGLIVLLLYIIIA 207 (220)
Q Consensus 184 ~~~~~k~~~ii~~iv~~il~~i~~ 207 (220)
|----||+++|++.-++++|.++.
T Consensus 19 w~iItKWyL~IavaSlI~lyy~v~ 42 (139)
T PF10875_consen 19 WSIITKWYLIIAVASLITLYYTVL 42 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444558899999888888887765
No 186
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=28.27 E-value=84 Score=19.67 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027705 190 LLALLTGLIVLLLYII 205 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i 205 (220)
+|+||++++.+|+-=|
T Consensus 5 ~wlIIviVlgvIigNi 20 (55)
T PF11446_consen 5 PWLIIVIVLGVIIGNI 20 (55)
T ss_pred hhHHHHHHHHHHHhHH
Confidence 4555555555555433
No 187
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=28.22 E-value=2.2e+02 Score=27.45 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=26.4
Q ss_pred HHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 147 KILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 147 k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
.++.+.+.-+.+.+-++..++.|..|. -|.||.++++++++.++++++
T Consensus 14 ~v~~~~~G~~~m~~Ia~~I~eGA~aFL-----------~reYk~i~~~~vi~~~ll~~~ 61 (682)
T PF03030_consen 14 WVLKQDEGNEKMQEIAAAIQEGAMAFL-----------KREYKTIAIFIVIVAILLFFL 61 (682)
T ss_dssp HHHTS----HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444566666666666666664 345677666666666655544
No 188
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=28.17 E-value=83 Score=19.98 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=6.0
Q ss_pred HHHhhHHHHH
Q 027705 184 WMKNAKLLAL 193 (220)
Q Consensus 184 ~~~~~k~~~i 193 (220)
|...|.++++
T Consensus 3 WladYWWiiL 12 (63)
T PF13980_consen 3 WLADYWWIIL 12 (63)
T ss_pred HHHHHHHHHH
Confidence 6666666644
No 189
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.10 E-value=3.3e+02 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027705 174 KQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAA 208 (220)
Q Consensus 174 ~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~ 208 (220)
..|++.=+-|-.|-.+-.+++.+++++.+++|.+.
T Consensus 180 gkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 180 GKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666667776666666555555554443
No 190
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=28.05 E-value=1.1e+02 Score=24.94 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=9.2
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTGLIVL 200 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~iv~~ 200 (220)
++|.+.+|.+.++++++++
T Consensus 28 ~~~~k~~r~~Al~alil~i 46 (218)
T PF10039_consen 28 RMWRKYKRAIALAALILFI 46 (218)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444333
No 191
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=27.99 E-value=1.9e+02 Score=22.82 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcC----CCcchhHHHHHhhHHHHHHHHHHhHHHHHH
Q 027705 108 SRVLHQQMEFFSS----NPSADTLNRVRGEVSEIRTIMVENIEKILE 150 (220)
Q Consensus 108 ~~~l~~~~~~yn~----~~~~dkl~~~~~~v~~v~~im~~ni~k~l~ 150 (220)
.|.+.+++++|.+ +...+.+.+..++.+++-+.+.+++++.++
T Consensus 135 Lp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~ 181 (199)
T PF10112_consen 135 LPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLD 181 (199)
T ss_pred hhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777743 334455556666666666666666665544
No 192
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=27.87 E-value=2.5e+02 Score=20.64 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=10.9
Q ss_pred HHhHHHHHHHHHHHhhHHHHHH
Q 027705 173 RKQSKRLRRALWMKNAKLLALL 194 (220)
Q Consensus 173 ~~~a~~l~r~~~~~~~k~~~ii 194 (220)
+++-+.++|++++=+.-+....
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~ 70 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLAT 70 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666655555444433
No 193
>PRK11901 hypothetical protein; Reviewed
Probab=27.62 E-value=76 Score=27.47 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q 027705 191 LALLTGLIVLLLYIIIAAACGGIT 214 (220)
Q Consensus 191 ~~ii~~iv~~il~~i~~~~cgg~~ 214 (220)
++-|+++|+++|+|-|...-+.++
T Consensus 39 MiGiGilVLlLLIi~IgSALksP~ 62 (327)
T PRK11901 39 MIGIGILVLLLLIIAIGSALKSPT 62 (327)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCC
Confidence 344455555555555555555554
No 194
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.61 E-value=1.4e+02 Score=24.03 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHH-hHHHHHHhccchHHHHHhhhhhh
Q 027705 132 GEVSEIRTIMVE-NIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 132 ~~v~~v~~im~~-ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
.-+.+.|..+.. ||+++-+-.+.+.+|.+.+++++
T Consensus 111 ~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQ 146 (218)
T KOG1655|consen 111 DTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQ 146 (218)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 45555555555555555555444
No 195
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=27.58 E-value=59 Score=26.33 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=23.9
Q ss_pred hHHHHHHHhhhCCCCC---CCceEEEeCCEEEEEEEeCCEE--EEEEecCCCC
Q 027705 25 TGAVARRIIEKLPAES---DSRVCFSQDRYIFHILRSDGLT--FLCMANDTFG 72 (220)
Q Consensus 25 ~~~~~~~il~~i~~~~---~~k~~~~~~~~~~~~l~~~~~~--~~~i~d~~~~ 72 (220)
|..+....|.++...+ ...+-+..|... +.+..=.+. =+|.++++.+
T Consensus 11 Y~~f~~ryL~kL~~~s~~~n~~C~I~IG~I~-g~~k~C~v~V~N~C~sna~~s 62 (215)
T PHA02947 11 YNLFIERYLQNLSLYSVPTNTTCGIHIGEIK-GQFKRCKLRIINKCLNNKRLS 62 (215)
T ss_pred HHHHHHHHHHHHHhccCcccccccEEEeeee-eecCCceEEEEEhhcCCHHHH
Confidence 4556677777776531 444556666554 332211233 3466655544
No 196
>PRK09697 protein secretion protein GspB; Provisional
Probab=27.53 E-value=51 Score=23.84 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHh---CCCCC
Q 027705 182 ALWMKNAKLLALLTGLIVLLLYIIIAAAC---GGITL 215 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~iv~~il~~i~~~~c---gg~~~ 215 (220)
.||-++..-. |+.++++.++..|...| ||+..
T Consensus 18 ~~~~~~~~~T--I~~Vi~L~~~~L~~AG~~~~GGYA~ 52 (139)
T PRK09697 18 GIFSRQKHST--IIYVICLLLICLWFAGMVLVGGYAR 52 (139)
T ss_pred chhhhhhccc--hHHHHHHHHHHHHHhcceeechhHH
Confidence 3554444333 34455555556665555 66643
No 197
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=27.30 E-value=3.2e+02 Score=23.26 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhh
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATM 165 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L 165 (220)
+.+...+..+-..-+.++|..+.+-.++++.|.+.+.+|
T Consensus 22 l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L 60 (304)
T PF02646_consen 22 LEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNL 60 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444445544444444444444444444
No 198
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=26.99 E-value=4.2e+02 Score=22.95 Aligned_cols=63 Identities=14% Similarity=0.283 Sum_probs=32.8
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhH-HHHH--HHHHHHhhHHHHHHHH-HHHH---HHHHHHHHHhCCCCC
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQS-KRLR--RALWMKNAKLLALLTG-LIVL---LLYIIIAAACGGITL 215 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a-~~l~--r~~~~~~~k~~~ii~~-iv~~---il~~i~~~~cgg~~~ 215 (220)
.++++|-=..+++...+..+..++ ..++ -+.|.+..-=++.=++ .++. .+|.|++.+-|++.|
T Consensus 133 ~~~~elg~~~~d~~~~~gmy~~r~~~~~~~~v~~~~~~~lEllfqaa~l~IdtlrtffLiVLsILGPIaF 202 (322)
T TIGR03782 133 RKLDELGWSPSDMKTMAGMYMERAAYNMKKSVRDWFRELLELLFQAAALVIDTLRTFFLIVLSILGPIAF 202 (322)
T ss_pred hHHHHhCCChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 456666544556766666665333 3333 3457777642222222 2221 346677777766654
No 199
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=26.89 E-value=1.5e+02 Score=17.73 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 027705 196 GLIVLLLYIIIA 207 (220)
Q Consensus 196 ~iv~~il~~i~~ 207 (220)
++.++++++|++
T Consensus 39 licllli~iiv~ 50 (52)
T PF04272_consen 39 LICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334445555543
No 200
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=26.87 E-value=3.2e+02 Score=23.51 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhc
Q 027705 76 PFSYLEDIQMRFMKNY 91 (220)
Q Consensus 76 af~fL~ei~~~f~~~~ 91 (220)
+-.||+.++++|....
T Consensus 246 ~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKAL 261 (384)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5578999998887655
No 201
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.73 E-value=2.8e+02 Score=24.37 Aligned_cols=34 Identities=12% Similarity=0.349 Sum_probs=22.4
Q ss_pred HHHhhhhhhhhHH--HHHHhHHHHHHHHHHHhhHHH
Q 027705 158 LVDKTATMQDGAF--HFRKQSKRLRRALWMKNAKLL 191 (220)
Q Consensus 158 L~~ks~~L~~~s~--~f~~~a~~l~r~~~~~~~k~~ 191 (220)
+.++...|+++|. .-++.-++||.-+.=-++|+.
T Consensus 317 meerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 317 MEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5667778888887 445555778777655555543
No 202
>PHA02911 C-type lectin-like protein; Provisional
Probab=26.70 E-value=1.7e+02 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=15.4
Q ss_pred HhccchHHHHHhhhhhhhhHHHHH
Q 027705 150 ERGDRIELLVDKTATMQDGAFHFR 173 (220)
Q Consensus 150 ~Rge~l~~L~~ks~~L~~~s~~f~ 173 (220)
+|-..+|.|++++.=+.+.|.-++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQ 25 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhh
Confidence 455667777777766666665554
No 203
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=26.70 E-value=2.7e+02 Score=25.58 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.5
Q ss_pred HHHhhHHHHH
Q 027705 184 WMKNAKLLAL 193 (220)
Q Consensus 184 ~~~~~k~~~i 193 (220)
.|..|||...
T Consensus 204 ~yE~~RW~~~ 213 (526)
T KOG4433|consen 204 FYESYRWLAY 213 (526)
T ss_pred HHHHHHHHHH
Confidence 4445554333
No 204
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.62 E-value=1.6e+02 Score=19.44 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 027705 106 EFSRVLHQQME 116 (220)
Q Consensus 106 ~F~~~l~~~~~ 116 (220)
+|+..|.+++.
T Consensus 23 SFSdvI~rli~ 33 (71)
T PF02697_consen 23 SFSDVIERLIE 33 (71)
T ss_pred CHHHHHHHHHh
Confidence 34555555543
No 205
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=26.59 E-value=1.4e+02 Score=21.23 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=31.1
Q ss_pred HHHhHHHHHHhccchHHHHHh--hhhhhhhHHHHHHhHHHHHH
Q 027705 141 MVENIEKILERGDRIELLVDK--TATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 141 m~~ni~k~l~Rge~l~~L~~k--s~~L~~~s~~f~~~a~~l~r 181 (220)
+...+..+|.++..|+.+..- ++.|.+..+.....++.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 345667778888888888886 77788888877777777776
No 206
>smart00096 UTG Uteroglobin.
Probab=26.50 E-value=1.2e+02 Score=19.91 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCc-chhHHHHHhhHHHHHHHHHHhHHHHHH
Q 027705 112 HQQMEFFSSNPS-ADTLNRVRGEVSEIRTIMVENIEKILE 150 (220)
Q Consensus 112 ~~~~~~yn~~~~-~dkl~~~~~~v~~v~~im~~ni~k~l~ 150 (220)
...++.||.++. .+...++++=+|....-=.+||-++++
T Consensus 22 ~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~ 61 (69)
T smart00096 22 EASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTE 61 (69)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344667876543 344456676676655555556666554
No 207
>PHA02692 hypothetical protein; Provisional
Probab=26.28 E-value=52 Score=21.63 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027705 134 VSEIRTIM 141 (220)
Q Consensus 134 v~~v~~im 141 (220)
+|-|+.+|
T Consensus 24 i~vVksVL 31 (70)
T PHA02692 24 LNIVRTVM 31 (70)
T ss_pred HHHHHHHH
Confidence 33444433
No 208
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=26.17 E-value=4.7e+02 Score=23.33 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=7.2
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 027705 179 LRRALWMKNAKLLALLTG 196 (220)
Q Consensus 179 l~r~~~~~~~k~~~ii~~ 196 (220)
..+--|+|..-..+++.+
T Consensus 178 ~~~~E~yRw~~~~~lL~l 195 (406)
T PF04906_consen 178 VSFYEYYRWLAYLGLLIL 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444443
No 209
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=26.14 E-value=1.1e+02 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=16.3
Q ss_pred HHHhhHHHHHHHHHHHHHH-HHHHHHHhCCCCC
Q 027705 184 WMKNAKLLALLTGLIVLLL-YIIIAAACGGITL 215 (220)
Q Consensus 184 ~~~~~k~~~ii~~iv~~il-~~i~~~~cgg~~~ 215 (220)
|.|+.-+.+++.+.+++++ ...-+||-+..+|
T Consensus 32 WRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~F 64 (292)
T KOG3950|consen 32 WRKRCLYTFVLLLMILIVVNLALTIWILKVMNF 64 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566666555555444444 3333445444555
No 210
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=26.11 E-value=1e+02 Score=27.22 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTGLIV 199 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~iv~ 199 (220)
+.+|++.+++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~ 51 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFA 51 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666655555444433
No 211
>COG3771 Predicted membrane protein [Function unknown]
Probab=26.01 E-value=56 Score=22.54 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=9.2
Q ss_pred HHHHHHHHHhCCCCC
Q 027705 201 LLYIIIAAACGGITL 215 (220)
Q Consensus 201 il~~i~~~~cgg~~~ 215 (220)
+-+++-|.+||+|-+
T Consensus 51 ~G~~lgwli~g~fy~ 65 (97)
T COG3771 51 AGFALGWLICGLFYL 65 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555678887743
No 212
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=25.97 E-value=1.8e+02 Score=21.65 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhh
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTA 163 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~ 163 (220)
+...++++.++++-+.+-=..+-.|.+.|..|-..+.
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~ 117 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQ 117 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344444444444444433344444444444444333
No 213
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.80 E-value=2.8e+02 Score=23.49 Aligned_cols=45 Identities=11% Similarity=0.253 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFH 171 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~ 171 (220)
+.++..-+..+|+...+-=.++-.-.+.|+.|.++++.+...-..
T Consensus 220 L~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~ 264 (273)
T KOG3065|consen 220 LDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDK 264 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHH
Confidence 344444444455443333334444457788888888887654333
No 214
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=25.39 E-value=80 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027705 190 LLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~~~~c 210 (220)
++.++++++++++|++....+
T Consensus 15 ~~~f~~~~~~Ii~W~i~Gp~~ 35 (132)
T PF04120_consen 15 PWAFVIAVAVIIVWAISGPVF 35 (132)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 444555555555566555544
No 215
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.32 E-value=32 Score=24.14 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=5.9
Q ss_pred HHHHHHHHHhC
Q 027705 201 LLYIIIAAACG 211 (220)
Q Consensus 201 il~~i~~~~cg 211 (220)
+.++.|+++|.
T Consensus 83 v~~l~w~f~~r 93 (96)
T PTZ00382 83 VGFLCWWFVCR 93 (96)
T ss_pred HHHHhheeEEe
Confidence 33555666654
No 216
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=25.17 E-value=1.2e+02 Score=20.17 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHhhhCCC--CCCCceEEEeCC-EEEEEEE--eCCEEEEEEecCCC
Q 027705 21 VTGNTGAVARRIIEKLPA--ESDSRVCFSQDR-YIFHILR--SDGLTFLCMANDTF 71 (220)
Q Consensus 21 ~~~~~~~~~~~il~~i~~--~~~~k~~~~~~~-~~~~~l~--~~~~~~~~i~d~~~ 71 (220)
.-.+|+.+...+-+++.. . .-+..++.+| ....-+- ++|-.|+|...+.+
T Consensus 24 ~~~sfd~lL~~lt~~l~l~~~-~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 24 RFKSFDALLDDLTEKVQLDPG-AVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hhCCHHHHHHHHHHHhCCCCC-cEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 346888888888887774 4 5677788777 6554443 48999999876654
No 217
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=25.10 E-value=1.4e+02 Score=24.90 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027705 176 SKRLRRALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 176 a~~l~r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
+.+-+--.||..|.+++++++.++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLGV 236 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455799999988888876544443
No 218
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=25.04 E-value=71 Score=26.68 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=17.7
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHhccch
Q 027705 129 RVRGEVSEIRTIMVENIEKILERGDRI 155 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~k~l~Rge~l 155 (220)
-++.+++.|+.|..-|-..-|+++-.+
T Consensus 319 llegeieavrriaymnqasslqnqvei 345 (436)
T PF13044_consen 319 LLEGEIEAVRRIAYMNQASSLQNQVEI 345 (436)
T ss_pred hhhhhHHHHHHHHHhhhhhhhhcceee
Confidence 346777777777766666666665443
No 219
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=24.86 E-value=1.7e+02 Score=21.31 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=28.4
Q ss_pred EEEEEEc--CCeEEEeecCC---------CCChH---HHHHHHhhhCCCCCCCceEEEeCCEEEE
Q 027705 4 LYALVAR--GTVVLAEFSAV---------TGNTG---AVARRIIEKLPAESDSRVCFSQDRYIFH 54 (220)
Q Consensus 4 ~Ya~Iar--~~~iLae~~~~---------~~~~~---~~~~~il~~i~~~~~~k~~~~~~~~~~~ 54 (220)
+||.|.. ++.+|+.-++. .+|.+ .+...+-++.....-....++.++|.||
T Consensus 36 iyAQvidd~~~~tl~saST~e~~~k~~~~~~n~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yh 100 (117)
T PRK05593 36 IYAQVIDDVKGKTLASASTLEKDVRAGLKGGNKEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYH 100 (117)
T ss_pred EEEEEEECCCCEEEEEEecCcHhHhccccCCCHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccc
Confidence 6888887 45777765532 22332 1233333333322145677888888886
No 220
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.63 E-value=5.1e+02 Score=23.14 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=11.1
Q ss_pred HHHHHhccchHHHHHhhhhh
Q 027705 146 EKILERGDRIELLVDKTATM 165 (220)
Q Consensus 146 ~k~l~Rge~l~~L~~ks~~L 165 (220)
=..-||+++|+..-++..+.
T Consensus 129 v~~gE~~G~L~~~l~~la~y 148 (397)
T COG1459 129 VAAGERSGNLDEVLQRLAKY 148 (397)
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 34556666666655544443
No 221
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=24.58 E-value=1.4e+02 Score=16.82 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHhccc
Q 027705 137 IRTIMVENIEKILERGDR 154 (220)
Q Consensus 137 v~~im~~ni~k~l~Rge~ 154 (220)
-++-+.+.||..|++|++
T Consensus 10 ~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 10 RKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 345567788999988865
No 222
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=24.48 E-value=1.9e+02 Score=23.01 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=36.8
Q ss_pred cCCCCcccHHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHH
Q 027705 68 NDTFGRRIPFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEK 147 (220)
Q Consensus 68 d~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k 147 (220)
+-+|.+..--..|.|.++......... .+ .+=...|+.....|.++.=-+.+-.-+.+..+.-.-+.+.+++
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~~H---LT-----~KS~~Ri~~vF~~f~~~efL~~lf~~~~~~~~~L~~i~~~Lnk 179 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVEPH---LT-----PKSHGRIDHVFNFFSDPEFLDALFSPDEEYRDHLGKICDGLNK 179 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHTTT---S------HHHHHHHHHHHHHHT-HHHHHHHTSG--GGHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh---CC-----hhhHHHHHHHHHhhCChHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 344455445555555555554433211 11 1112345555555644322222222234566666677888999
Q ss_pred HHHhcc
Q 027705 148 ILERGD 153 (220)
Q Consensus 148 ~l~Rge 153 (220)
++|+|+
T Consensus 180 lld~g~ 185 (186)
T PF05527_consen 180 LLDEGS 185 (186)
T ss_dssp HHHTT-
T ss_pred HHhCCC
Confidence 999985
No 223
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=24.48 E-value=49 Score=23.38 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=8.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 027705 181 RALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 181 r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
|--+| |..++++.+++.++|
T Consensus 3 ~yp~W---Kyllil~vl~~~~ly 22 (101)
T PF13721_consen 3 RYPLW---KYLLILVVLLLGALY 22 (101)
T ss_pred CcchH---HHHHHHHHHHHHHHH
Confidence 33455 334444444444444
No 224
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=24.20 E-value=27 Score=22.62 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027705 190 LLALLTGLIVLLLYIII 206 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~ 206 (220)
+..+|+++|+.+++.|+
T Consensus 11 laavIaG~Vvgll~ail 27 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAIL 27 (64)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445544444444333
No 225
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=24.03 E-value=2.9e+02 Score=20.13 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=45.4
Q ss_pred HHhhhCCC--CCCCceEEEeCCEEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCC--ccc-CCCcccc
Q 027705 31 RIIEKLPA--ESDSRVCFSQDRYIFHILR-SDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYGRV--AHY-APAYAMN 104 (220)
Q Consensus 31 ~il~~i~~--~~~~k~~~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~~~--~~~-~~~~~~~ 104 (220)
.++.++.| .+.++..+..+.+..|+.. ..|.-|+.++++... ..+++ |+.+...|.. |..+ .-+ ..|-. .
T Consensus 45 aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~t~-na~~q-l~kiY~lYsd-YV~knPfys~EMPI~-c 120 (134)
T COG5122 45 AILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKRTV-NALFQ-LQKIYSLYSD-YVTKNPFYSPEMPIQ-C 120 (134)
T ss_pred hhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEEecCCch-hHHHH-HHHHHHHHHH-HhhcCCCCCccccee-h
Confidence 34444444 3478888999999888765 589999999944432 23333 4444444432 3211 111 11211 2
Q ss_pred hhHHHHHHHHHH
Q 027705 105 DEFSRVLHQQME 116 (220)
Q Consensus 105 ~~F~~~l~~~~~ 116 (220)
.-|++.+++..+
T Consensus 121 ~lFde~lkrm~e 132 (134)
T COG5122 121 SLFDEHLKRMFE 132 (134)
T ss_pred hhhhHHHHHHhc
Confidence 467777776553
No 226
>PLN03223 Polycystin cation channel protein; Provisional
Probab=23.95 E-value=4.6e+02 Score=27.68 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=18.1
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDK 161 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~k 161 (220)
.++.+.|.++-|=+.-|.+--+++-+|++||..|++|
T Consensus 1588 erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k 1624 (1634)
T PLN03223 1588 ERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENK 1624 (1634)
T ss_pred HHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 3344445555554444555545555555555554443
No 227
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=23.77 E-value=1.4e+02 Score=16.29 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=5.8
Q ss_pred HHHHHhhHHHHHHH
Q 027705 182 ALWMKNAKLLALLT 195 (220)
Q Consensus 182 ~~~~~~~k~~~ii~ 195 (220)
+.|++-.++..+++
T Consensus 3 ~~~~~~H~~~g~~~ 16 (34)
T PF13172_consen 3 KFWRKIHRWLGLIA 16 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 228
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=23.71 E-value=1.8e+02 Score=17.88 Aligned_cols=7 Identities=0% Similarity=0.282 Sum_probs=3.1
Q ss_pred HHHHhhH
Q 027705 183 LWMKNAK 189 (220)
Q Consensus 183 ~~~~~~k 189 (220)
..|+.++
T Consensus 39 ~~l~~~~ 45 (64)
T smart00831 39 RFLRQFH 45 (64)
T ss_pred HHHHHHH
Confidence 3444444
No 229
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.51 E-value=3.9e+02 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=12.9
Q ss_pred cchHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027705 153 DRIELLVDKTATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 153 e~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
+.+++|..-...|..........++++.+
T Consensus 67 eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 230
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.32 E-value=40 Score=28.56 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=3.4
Q ss_pred HHHHhhH
Q 027705 183 LWMKNAK 189 (220)
Q Consensus 183 ~~~~~~k 189 (220)
...+|.|
T Consensus 163 kYLkhLK 169 (295)
T TIGR01478 163 NYLKNLK 169 (295)
T ss_pred HHHHhhh
Confidence 3455554
No 231
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=23.27 E-value=2.5e+02 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHhHHHHHHHHH
Q 027705 164 TMQDGAFHFRKQSKRLRRALW 184 (220)
Q Consensus 164 ~L~~~s~~f~~~a~~l~r~~~ 184 (220)
++...+...+...++|.+.+-
T Consensus 231 Ni~~t~~n~k~A~kEL~kA~~ 251 (283)
T COG5325 231 NIENTSDNLKNANKELEKAPA 251 (283)
T ss_pred hhhhhhHHHHhhHHHHHHhHH
Confidence 334556666667777877763
No 232
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.00 E-value=2.8e+02 Score=19.59 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHH
Q 027705 130 VRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFH 171 (220)
Q Consensus 130 ~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~ 171 (220)
++..++++...+.++++.+ .+.++.|..+-+.|...-..
T Consensus 61 v~~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred heecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655 44444555555544443333
No 233
>PLN00064 photosystem II protein Psb27; Provisional
Probab=22.90 E-value=3.6e+02 Score=20.86 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCC----cchhH-HHHHhhHHHHHHHHHHhHHH
Q 027705 73 RRIPFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNP----SADTL-NRVRGEVSEIRTIMVENIEK 147 (220)
Q Consensus 73 ~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~----~~dkl-~~~~~~v~~v~~im~~ni~k 147 (220)
+.-+-.=+.+..+.|.+.|..........+| ..+...|..+--+|++.. -.+|+ ..+.+|++++ ++
T Consensus 90 ~a~a~aeaR~~iNdyvSrYRr~~~v~Gl~SF-ttMyTALNaLAGHY~SfgpnrPlPeKlK~RL~qE~~~A--------Ek 160 (166)
T PLN00064 90 VADAVAELRETSNSWVAKYRREKALLGRPSF-RDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTA--------EK 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCcccH-HHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHH--------HH
Confidence 4456666777778888888643322222244 467788888888886642 23444 3566666654 45
Q ss_pred HHHhc
Q 027705 148 ILERG 152 (220)
Q Consensus 148 ~l~Rg 152 (220)
.+.||
T Consensus 161 al~RG 165 (166)
T PLN00064 161 ALLRG 165 (166)
T ss_pred HHHcc
Confidence 56665
No 234
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=22.50 E-value=1.7e+02 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHH
Q 027705 156 ELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLAL 193 (220)
Q Consensus 156 ~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~i 193 (220)
|+..+|+++---.++.|-++-+.-+|-+|-|.++.-++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 104 DEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred hHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 33444444444455666666666667777766665554
No 235
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=22.29 E-value=1.3e+02 Score=24.69 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=8.7
Q ss_pred HHHHHHHHHhCC
Q 027705 201 LLYIIIAAACGG 212 (220)
Q Consensus 201 il~~i~~~~cgg 212 (220)
|+|+|++.++||
T Consensus 162 ilf~i~w~~~~g 173 (224)
T PF03839_consen 162 ILFLITWFFTGG 173 (224)
T ss_pred HHHHHHHHHhcC
Confidence 667777777766
No 236
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=22.07 E-value=1.4e+02 Score=19.65 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=5.7
Q ss_pred HHHHHHHHhHHH
Q 027705 136 EIRTIMVENIEK 147 (220)
Q Consensus 136 ~v~~im~~ni~k 147 (220)
+.+.+|.+|++.
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 344455555443
No 237
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=21.87 E-value=1.5e+02 Score=25.68 Aligned_cols=16 Identities=0% Similarity=-0.064 Sum_probs=8.1
Q ss_pred HHHHHhhHHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTGL 197 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~i 197 (220)
...|++.+++++++++
T Consensus 25 ~~L~r~k~~Ii~~~~~ 40 (325)
T PRK15471 25 VQLWRGKMTIIISVIV 40 (325)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3556665555544433
No 238
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.69 E-value=22 Score=28.76 Aligned_cols=9 Identities=22% Similarity=0.826 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 027705 191 LALLTGLIV 199 (220)
Q Consensus 191 ~~ii~~iv~ 199 (220)
+.|+++++.
T Consensus 41 iaiVAG~~t 49 (221)
T PF08374_consen 41 IAIVAGIMT 49 (221)
T ss_pred eeeecchhh
Confidence 334444333
No 239
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=21.67 E-value=3.7e+02 Score=25.20 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=27.0
Q ss_pred HHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027705 146 EKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLL 202 (220)
Q Consensus 146 ~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il 202 (220)
..++..++--+.+.+-|...++.+..|. -|.||.+.++++++++++
T Consensus 25 ~sVl~~~~Gn~rm~eIa~aIreGA~ayL-----------~rqy~tiavv~ivva~ll 70 (703)
T COG3808 25 KSVLRADAGNERMKEIAAAIREGAMAYL-----------ARQYKTIAVVGIVVAILL 70 (703)
T ss_pred HHHHhccCCcHHHHHHHHHHHHhHHHHH-----------HhhhhHHHHHHHHHHHHH
Confidence 3444455555666666666666666653 456777777665544444
No 240
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=21.49 E-value=3.7e+02 Score=20.43 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchH-HHHHhhhhhhhhHHHHHHhHHHHHHHHHH
Q 027705 108 SRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIE-LLVDKTATMQDGAFHFRKQSKRLRRALWM 185 (220)
Q Consensus 108 ~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~-~L~~ks~~L~~~s~~f~~~a~~l~r~~~~ 185 (220)
++.+++....|.+..+ .++.-+.+.+.-..+-++=+++. .+..+-+.|+..|+.|-++-...-|.+.+
T Consensus 26 K~~lkev~~~~~~~~~----------~de~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~peak~Fv~~li~~~~~l~~ 94 (154)
T PF05823_consen 26 KAELKEVAKNYAKFKN----------EDEMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSPEAKAFVKELIAKARSLYA 94 (154)
T ss_dssp HHHHHHHHTT-----------------TTHHHHHHHH-HHHHHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCC----------HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4667777776754432 22233333333334444433333 36678888999999987666554444433
No 241
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=21.43 E-value=3.5e+02 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHhc
Q 027705 105 DEFSRVLHQQMEFFS 119 (220)
Q Consensus 105 ~~F~~~l~~~~~~yn 119 (220)
.+|...++++.++.+
T Consensus 82 ~~F~~~l~~i~~~H~ 96 (164)
T PF10436_consen 82 EKFTELLERILDRHS 96 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 466666666666553
No 242
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.24 E-value=89 Score=25.32 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=14.4
Q ss_pred HHHHHhHHHHH-HHHHHHhhHHHHHHHHHHHHHHHH
Q 027705 170 FHFRKQSKRLR-RALWMKNAKLLALLTGLIVLLLYI 204 (220)
Q Consensus 170 ~~f~~~a~~l~-r~~~~~~~k~~~ii~~iv~~il~~ 204 (220)
..|++....-+ .||-.-..-++|.+.++||.+||+
T Consensus 114 ~~~kk~~CEen~~K~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 114 EIFKKEICEENNNKMAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred cccchhhhhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 344433333333333344444443
No 243
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=21.23 E-value=1.5e+02 Score=17.23 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHHHhccchHHHHHhhh
Q 027705 138 RTIMVENIEKILERGDRIELLVDKTA 163 (220)
Q Consensus 138 ~~im~~ni~k~l~Rge~l~~L~~ks~ 163 (220)
.+.+.+|-+.+|...+-++.++++-+
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34566777777877777777777654
No 244
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=21.23 E-value=1.3e+02 Score=20.78 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=11.5
Q ss_pred HHHHHhhHHHHHHHHHH
Q 027705 182 ALWMKNAKLLALLTGLI 198 (220)
Q Consensus 182 ~~~~~~~k~~~ii~~iv 198 (220)
++.||||++.+++++..
T Consensus 60 Rlv~RN~~ill~l~l~~ 76 (87)
T PF05803_consen 60 RLVKRNYKILLILALSY 76 (87)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 46788888776655443
No 245
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=21.20 E-value=99 Score=19.88 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCc-chhHHHHHhhHHHHHHHHHHhHHHHHH
Q 027705 109 RVLHQQMEFFSSNPS-ADTLNRVRGEVSEIRTIMVENIEKILE 150 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~-~dkl~~~~~~v~~v~~im~~ni~k~l~ 150 (220)
+..+..+++|+.++. .....++++-++....-=..|+.++++
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 59 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLE 59 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666777865432 344456666666655555566666654
No 246
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=21.20 E-value=1.2e+02 Score=20.76 Aligned_cols=14 Identities=0% Similarity=0.460 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 027705 192 ALLTGLIVLLLYII 205 (220)
Q Consensus 192 ~ii~~iv~~il~~i 205 (220)
++++.|||+++|..
T Consensus 10 ~V~V~IVclliya~ 23 (92)
T PHA02681 10 VIVISIVCYIVIMM 23 (92)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445554443
No 247
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=20.90 E-value=3.3e+02 Score=23.03 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=27.8
Q ss_pred HhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh---hhHHHHHHhHHHHHHHHHHHhhHHHHH
Q 027705 131 RGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ---DGAFHFRKQSKRLRRALWMKNAKLLAL 193 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~---~~s~~f~~~a~~l~r~~~~~~~k~~~i 193 (220)
+++++||+..+.++ ++..+.+++.-..-. .+...+++.....-...||+.+-+.++
T Consensus 160 ~eE~eEVe~el~~~-------~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~ 218 (294)
T KOG2881|consen 160 QEELEEVEAELAKR-------EDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFL 218 (294)
T ss_pred hhhHHHHHHHHHhc-------cchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHH
Confidence 78888888755443 333333222211111 111445555555555567766655443
No 248
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.64 E-value=8.2e+02 Score=24.94 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=34.3
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHH--HHHHhHHHHHHHHHHHhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAF--HFRKQSKRLRRALWMKNA 188 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~--~f~~~a~~l~r~~~~~~~ 188 (220)
.....++.+++++.....++.+++-+=...+++...+-+.+..... .=....-..+|+..||.=
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE 476 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREE 476 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888888887777766554444444444444444422111 112333345566666544
No 249
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=20.56 E-value=4.8e+02 Score=21.31 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhh
Q 027705 106 EFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATM 165 (220)
Q Consensus 106 ~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L 165 (220)
+.+..++++|++- .-.+.|.-..++.++.--+..+. =+.++++.+.++++.++.+..
T Consensus 135 d~~~Ql~Rl~~Rd-~lse~dAe~Rl~sQmp~~~k~~~--a~~Vi~Nng~~~~l~~qv~~v 191 (225)
T KOG3220|consen 135 DEELQLERLVERD-ELSEEDAENRLQSQMPLEKKCEL--ADVVIDNNGSLEDLYEQVEKV 191 (225)
T ss_pred CcHHHHHHHHHhc-cccHHHHHHHHHhcCCHHHHHHh--hheeecCCCChHHHHHHHHHH
Confidence 4467788888764 22333444445554443333322 246788888888888776654
No 250
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=20.55 E-value=79 Score=29.08 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=9.2
Q ss_pred chhHHHHHhhHHHHHHHH
Q 027705 124 ADTLNRVRGEVSEIRTIM 141 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im 141 (220)
.++++ +-.++.++.+-+
T Consensus 431 ~~PlD-IS~eL~~vn~sL 447 (490)
T PF00523_consen 431 SDPLD-ISSELGQVNNSL 447 (490)
T ss_dssp -SHHH-HHHHHHHHHHHH
T ss_pred cCccc-hhhHHHHHHHHH
Confidence 45555 666666655543
No 251
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=20.40 E-value=1e+02 Score=26.18 Aligned_cols=26 Identities=8% Similarity=0.469 Sum_probs=21.0
Q ss_pred eCCEEEEEEEeCCEEEEEEecCCCCc
Q 027705 48 QDRYIFHILRSDGLTFLCMANDTFGR 73 (220)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~i~d~~~~~ 73 (220)
++|++|-|-..+++.++|+|+-.+-.
T Consensus 238 i~g~ly~y~~~~~v~i~c~chg~~~~ 263 (284)
T PF07897_consen 238 IEGFLYKYGKGEEVRIVCVCHGSFLS 263 (284)
T ss_pred eeEEEEEecCCCeEEEEEEecCCCCC
Confidence 46788888667899999999988743
No 252
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=2.5e+02 Score=24.36 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=35.7
Q ss_pred hHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 027705 144 NIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIIIAAACGGI 213 (220)
Q Consensus 144 ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~~~~cgg~ 213 (220)
++..-+|=+.+.+.|..+-+-.++....+..+...-+ +-.=-|.++++|++-|++.++=++.-.|+++
T Consensus 264 ~~~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~~~--s~~lEWivIiLI~~eVllsl~~i~~~~~~~~ 331 (331)
T COG1723 264 AVREYLDINPRVNVLNRRLEVISDLLDILNEQLNHSH--STRLEWIVIILIGLEVLLSLYNIIVKYIGAL 331 (331)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cceeEEEehhHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555566666666666655555555443332111 1000113444555566777777777777653
No 253
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.24 E-value=1.8e+02 Score=22.13 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 027705 187 NAKLLALLTGL 197 (220)
Q Consensus 187 ~~k~~~ii~~i 197 (220)
-+++.++++++
T Consensus 17 ~~~~~~i~~ll 27 (149)
T PF11694_consen 17 YLRYILIIILL 27 (149)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 254
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.22 E-value=1.5e+02 Score=17.73 Aligned_cols=8 Identities=25% Similarity=0.547 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 027705 136 EIRTIMVE 143 (220)
Q Consensus 136 ~v~~im~~ 143 (220)
+.+.++.+
T Consensus 5 EAkelLqe 12 (46)
T PF08946_consen 5 EAKELLQE 12 (46)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444433
No 255
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=20.20 E-value=88 Score=28.15 Aligned_cols=22 Identities=18% Similarity=-0.071 Sum_probs=17.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLLYIII 206 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~~i~ 206 (220)
|+++.+|.++++.|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 7888888888888777776654
No 256
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=20.14 E-value=2.1e+02 Score=17.11 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhcc
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGD 153 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge 153 (220)
..+++.+++.++.-|.++++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 568899999999999999998877765
No 257
>PTZ00370 STEVOR; Provisional
Probab=20.05 E-value=53 Score=27.90 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=9.3
Q ss_pred hhHHHHHhhHHHHHHHHHHh
Q 027705 125 DTLNRVRGEVSEIRTIMVEN 144 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~n 144 (220)
+...+++.++-+.=+-|--+
T Consensus 102 e~k~klEKel~e~~ee~fg~ 121 (296)
T PTZ00370 102 EPMSTLEKELLETYEEMFGD 121 (296)
T ss_pred chhHHHHHHHHHHHHHHhcC
Confidence 33445555555544444433
Done!