Query 027705
Match_columns 220
No_of_seqs 150 out of 994
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 23:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 2.3E-60 7.9E-65 377.2 5.2 188 1-189 2-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 6.3E-51 2.2E-55 325.3 12.5 185 1-187 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 5.2E-39 1.8E-43 255.7 6.9 174 1-181 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 2.5E-34 8.5E-39 223.6 15.5 119 1-120 54-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 7.2E-32 2.5E-36 188.3 11.8 89 122-210 2-90 (91)
6 2vx8_A Nucleoporin-like protei 100.0 3.8E-30 1.3E-34 199.4 12.8 120 1-121 44-163 (169)
7 2kog_A Vesicle-associated memb 100.0 3.9E-31 1.3E-35 192.8 4.7 90 121-210 29-118 (119)
8 3bw6_A Synaptobrevin homolog Y 99.9 1.3E-24 4.6E-29 164.6 13.4 122 1-126 5-144 (144)
9 2nps_A VAMP-4, vesicle-associa 99.9 1.1E-25 3.8E-30 151.2 6.1 73 119-191 2-74 (74)
10 1sfc_A VAMP 2, protein (synapt 99.9 1.8E-24 6.1E-29 151.9 8.9 71 121-191 26-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.9 4.6E-25 1.6E-29 150.2 4.3 71 120-190 10-80 (80)
12 1n7s_A Vesicle-associated memb 99.9 1.1E-21 3.9E-26 127.6 7.6 63 122-184 1-63 (63)
13 3b5n_A Synaptobrevin homolog 1 99.9 1.8E-21 6.1E-26 125.7 7.5 61 124-184 1-61 (61)
14 1gl2_A Endobrevin; membrane pr 99.8 6.7E-20 2.3E-24 119.7 6.2 62 120-181 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 3.5E-17 1.2E-21 105.4 6.4 59 125-183 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.3 1.2E-09 4E-14 62.9 -8.1 32 122-153 6-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.2 1.3E-06 4.6E-11 73.5 4.5 33 123-155 278-310 (310)
18 2fh5_A Signal recognition part 97.9 2.3E-05 7.9E-10 60.6 6.8 109 4-115 13-134 (185)
19 3hd7_B Syntaxin-1A; membrane p 97.4 0.01 3.5E-07 41.9 14.0 53 109-167 11-63 (109)
20 3hd7_A Vesicle-associated memb 96.3 0.068 2.3E-06 36.3 10.2 73 127-203 14-86 (91)
21 2fz0_A R-snare NYV1P, V-snare 94.7 0.076 2.6E-06 38.4 6.0 56 30-85 52-114 (149)
22 2kog_A Vesicle-associated memb 92.2 0.049 1.7E-06 39.0 1.5 60 125-184 40-99 (119)
23 2vgl_S AP-2 complex subunit si 91.6 1.9 6.3E-05 31.4 9.6 49 44-92 48-96 (142)
24 1w63_Q Adapter-related protein 91.1 3.6 0.00012 30.4 11.8 90 3-92 2-96 (158)
25 2j3w_A Sedlin, trafficking pro 89.6 4.6 0.00016 29.3 13.0 117 1-119 3-140 (142)
26 2j3t_C Trafficking protein par 88.1 6.1 0.00021 28.8 13.2 115 1-118 1-137 (145)
27 3tjz_C Coatomer subunit zeta-1 87.2 7.3 0.00025 28.7 12.3 87 3-91 13-105 (153)
28 2vgl_M AP-2 complex subunit MU 86.5 12 0.00042 32.2 12.6 49 44-92 46-94 (435)
29 1w63_M Adaptor-related protein 85.6 4.8 0.00017 34.7 9.5 91 1-92 1-96 (423)
30 3hd7_B Syntaxin-1A; membrane p 84.4 8.1 0.00028 26.7 11.7 8 204-211 98-105 (109)
31 2k1a_A Integrin alpha-IIB; sin 83.0 2.5 8.7E-05 24.1 4.4 19 195-213 19-37 (42)
32 1rh5_B Preprotein translocase 82.9 0.78 2.7E-05 29.8 2.4 52 154-205 4-55 (74)
33 2ww9_B Protein transport prote 81.5 1.1 3.6E-05 29.6 2.7 43 163-205 26-68 (80)
34 2knc_A Integrin alpha-IIB; tra 81.5 1.5 5E-05 26.6 3.1 19 195-213 21-39 (54)
35 2l8s_A Integrin alpha-1; trans 81.2 1.6 5.4E-05 26.4 3.2 19 195-213 18-36 (54)
36 1t3j_A Mitofusin 1; coiled coi 76.9 9.6 0.00033 25.8 6.4 43 127-169 38-80 (96)
37 2wwb_B SEC61gamma, protein tra 76.8 0.57 1.9E-05 29.9 0.3 52 155-206 4-55 (68)
38 1jth_B Syntaxin 1A; coiled-coi 74.7 14 0.00048 23.6 7.2 42 125-166 10-51 (77)
39 3cue_C Transport protein parti 72.1 27 0.00092 25.7 9.2 87 29-118 51-156 (159)
40 3cue_A Transport protein parti 70.3 37 0.0013 26.6 10.2 76 42-118 118-218 (219)
41 2j3t_D Trafficking protein par 69.8 38 0.0013 26.5 11.7 88 31-121 120-212 (219)
42 1urq_A M-tomosyn isoform; tran 69.7 17 0.00059 22.5 6.7 49 127-175 13-61 (63)
43 1n7s_A Vesicle-associated memb 68.9 17 0.00059 22.2 7.6 51 133-183 5-55 (63)
44 3mp7_B Preprotein translocase 64.3 3.1 0.00011 25.8 1.6 48 158-205 4-51 (61)
45 3b5n_A Synaptobrevin homolog 1 64.2 22 0.00074 21.7 7.6 50 134-183 4-53 (61)
46 1sfc_A VAMP 2, protein (synapt 64.2 30 0.001 23.3 8.5 51 127-177 39-89 (96)
47 1txp_A HnRNP C, heterogeneous 64.2 4.3 0.00015 20.7 1.8 24 129-156 3-26 (28)
48 2nps_A VAMP-4, vesicle-associa 56.7 31 0.0011 21.8 5.6 51 127-177 17-67 (74)
49 2nps_B Syntaxin 13, vesicle-as 56.6 34 0.0011 21.4 7.4 43 125-167 6-48 (71)
50 2ww9_B Protein transport prote 55.8 19 0.00066 23.4 4.4 31 151-181 7-37 (80)
51 2zxe_G FXYD10, phospholemman-l 51.4 22 0.00074 22.7 3.9 19 185-203 16-34 (74)
52 1pi7_A VPU protein, U ORF prot 49.3 19 0.00066 19.7 3.0 17 192-208 7-23 (36)
53 1spf_A Pulmonary surfactant-as 47.1 31 0.0011 18.2 3.8 21 187-207 9-29 (35)
54 4a4y_A Protein MXIG; protein b 46.9 38 0.0013 23.1 4.8 42 3-57 86-127 (146)
55 2ygg_A Sodium/hydrogen exchang 46.3 21 0.00072 22.6 3.2 24 131-154 6-29 (70)
56 3b5n_B Protein SSO1; snare com 46.2 51 0.0017 20.4 7.9 43 125-167 10-52 (69)
57 3lcn_C MRNA transport factor G 46.1 27 0.00092 17.8 3.0 22 123-144 4-25 (29)
58 3h3g_B Parathyroid hormone-rel 45.3 9.9 0.00034 18.8 1.3 12 177-188 5-16 (24)
59 1n7s_B Syntaxin 1A; neuronal s 43.4 56 0.0019 20.1 6.5 43 125-167 12-54 (68)
60 2h8b_B Insulin-like 3; insulin 43.0 19 0.00066 19.0 2.3 13 205-217 17-29 (31)
61 2jp3_A FXYD domain-containing 40.8 39 0.0013 21.1 3.8 19 185-203 14-32 (67)
62 3fym_A Putative uncharacterize 39.3 6.3 0.00021 27.9 0.0 22 185-206 102-123 (130)
63 2klu_A T-cell surface glycopro 37.8 8.2 0.00028 24.2 0.4 21 190-210 10-30 (70)
64 1l4a_A Synaptobrevin; snare, s 35.9 34 0.0012 22.0 3.2 50 127-176 24-73 (80)
65 2y6x_A PSB27, photosystem II 1 35.7 87 0.003 21.7 5.4 62 76-138 39-104 (113)
66 2kmf_A Photosystem II 11 kDa p 35.1 66 0.0022 22.4 4.7 64 74-138 41-108 (115)
67 2jo1_A Phospholemman; FXYD1, N 33.4 54 0.0019 20.7 3.6 18 185-202 13-30 (72)
68 2fhw_B Relaxin 3 (prorelaxin H 33.2 23 0.00079 18.0 1.6 11 205-215 17-27 (27)
69 3vmt_A Monofunctional glycosyl 31.9 26 0.00088 28.3 2.5 34 177-210 25-59 (263)
70 1gl2_A Endobrevin; membrane pr 31.5 91 0.0031 19.0 6.8 51 132-182 9-59 (65)
71 1gl2_B Syntaxin 7; membrane pr 31.3 90 0.0031 19.0 7.2 44 125-168 9-52 (65)
72 1l4a_C S-SNAP25 fusion protein 30.1 1.1E+02 0.0039 19.8 5.4 47 123-169 25-71 (83)
73 1nhl_A Synaptosomal-associated 28.8 92 0.0032 18.3 6.2 41 129-169 4-44 (54)
74 2oxj_A Hybrid alpha/beta pepti 27.5 76 0.0026 16.9 3.8 9 157-165 5-13 (34)
75 1sfc_B Protein (syntaxin 1A), 27.0 1.3E+02 0.0043 19.3 7.8 43 125-167 21-63 (83)
76 1ccd_A Clara cell 17 KD protei 26.8 62 0.0021 20.7 3.2 42 110-151 22-64 (77)
77 1dn1_B Syntaxin 1A, syntaxin b 26.7 49 0.0017 26.4 3.4 41 126-166 201-241 (267)
78 3n2f_G Na+/K+ ATPase gamma sub 26.5 50 0.0017 17.3 2.2 21 185-205 7-27 (31)
79 2jqq_A Conserved oligomeric go 25.8 58 0.002 24.9 3.3 88 71-167 12-113 (204)
80 3bo0_B Preprotein translocase 25.5 72 0.0025 19.4 3.3 17 172-188 9-25 (65)
81 2oo9_A E3 ubiquitin-protein li 25.3 33 0.0011 19.8 1.4 40 106-145 3-43 (46)
82 1iij_A ERBB-2 receptor protein 24.7 61 0.0021 17.5 2.4 17 190-206 7-23 (35)
83 3rkg_A Magnesium transporter M 24.5 2.7E+02 0.0091 22.2 8.8 85 77-180 103-187 (261)
84 2jwa_A Receptor tyrosine-prote 23.9 52 0.0018 18.8 2.1 7 193-199 14-20 (44)
85 1f5n_A Interferon-induced guan 23.3 3.2E+02 0.011 24.5 8.4 24 165-188 517-540 (592)
86 1j3w_A Giding PROTEIN-MGLB; gl 23.3 2.2E+02 0.0075 20.8 11.6 77 7-84 34-126 (163)
87 3t97_C Nuclear pore glycoprote 22.8 88 0.003 19.3 3.2 20 148-167 7-26 (64)
88 1utg_A Uteroglobin; steroid bi 22.6 58 0.002 20.4 2.4 42 110-151 20-62 (70)
89 3r45_C Holliday junction recog 21.4 72 0.0024 20.3 2.6 21 105-125 28-48 (81)
90 1fjk_A Cardiac phospholamban; 20.8 1.3E+02 0.0044 17.2 3.8 9 198-206 41-49 (52)
91 2kbc_B INSL5_B-chain; peptide 20.7 11 0.00036 19.1 -1.1 11 206-216 15-25 (26)
92 3b5n_C Protein transport prote 20.1 1.7E+02 0.0058 18.3 7.8 54 127-180 14-67 (70)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2.3e-60 Score=377.21 Aligned_cols=188 Identities=41% Similarity=0.731 Sum_probs=152.3
Q ss_pred CceEEEEEEcCCeEEEeecCCCCChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 027705 1 MAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYL 80 (220)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 80 (220)
|||+|||||||++|||||+..+|||..+++.+|+++|++ ++|.+++.|+|.|||+.++|++|+|+||++||+++||.||
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~-~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 999999999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHH
Q 027705 81 EDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVD 160 (220)
Q Consensus 81 ~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ 160 (220)
++|+++|.+.|+..+.++.|++++.+|.+.|+++|++|+++++.|++.+++++|+||++||.+||+++|+|||+||.|++
T Consensus 81 ~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ 160 (189)
T 4b93_A 81 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLID 160 (189)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEE
T ss_pred HHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999987778889999889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHhHHHHHHHHHHHhhH
Q 027705 161 KTATMQDGAFHFRKQSKRLRRALWMKNAK 189 (220)
Q Consensus 161 ks~~L~~~s~~f~~~a~~l~r~~~~~~~k 189 (220)
||++|+.+|+.|+++|++++|+|||+|+|
T Consensus 161 ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 161 KTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp TTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=6.3e-51 Score=325.26 Aligned_cols=185 Identities=23% Similarity=0.456 Sum_probs=118.2
Q ss_pred CceEEEEEEcC--CeEEEeecCCC---CC----hHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCC
Q 027705 1 MAILYALVARG--TVVLAEFSAVT---GN----TGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTF 71 (220)
Q Consensus 1 M~I~Ya~Iar~--~~iLae~~~~~---~~----~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~ 71 (220)
| |+|++|||+ ++|||++++.+ |+ |.++++.++++++++.++|.+++.|+|.|||+.++|++|+|+||++|
T Consensus 2 M-i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 2 M-VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp C-CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred c-eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 5 899999998 89999998743 44 78899999999998448999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhhcCCCccc-CCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHH
Q 027705 72 GRRIPFSYLEDIQMRFMKNYGRVAHY-APAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILE 150 (220)
Q Consensus 72 ~~~~af~fL~ei~~~f~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~ 150 (220)
|+++||.||++|+++|...|+..+.+ +.||++. +|.+.|+++|++|++|++.|++.+++++|+||++||.+||+++|+
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~ 159 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQ 159 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------CCEEEHHHHC-
T ss_pred chHHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999866544 5799995 999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHh
Q 027705 151 RGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKN 187 (220)
Q Consensus 151 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~ 187 (220)
|||+||.|++||++|+.+|+.|+++|++++|+|||++
T Consensus 160 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 160 RGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp -------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=5.2e-39 Score=255.73 Aligned_cols=174 Identities=23% Similarity=0.391 Sum_probs=150.1
Q ss_pred CceEEEEEEc--CC--eEEEeecCCC----------CChHH-HHHHHhhhCCCCCCCceEEEeCCEEEE-EEEeCCEEEE
Q 027705 1 MAILYALVAR--GT--VVLAEFSAVT----------GNTGA-VARRIIEKLPAESDSRVCFSQDRYIFH-ILRSDGLTFL 64 (220)
Q Consensus 1 M~I~Ya~Iar--~~--~iLae~~~~~----------~~~~~-~~~~il~~i~~~~~~k~~~~~~~~~~~-~l~~~~~~~~ 64 (220)
|.|++.+|.+ ++ .+|+...+.+ ++|.. +++.+++++++ ++|.+++.|+|.|| |+.++|++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 8899999998 22 5666544422 23434 45789999888 68999999999999 8999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhcCC-Cccc--CCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHH
Q 027705 65 CMANDTFGRRIPFSYLEDIQMRFMKNYGR-VAHY--APAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIM 141 (220)
Q Consensus 65 ~i~d~~~~~~~af~fL~ei~~~f~~~~~~-~~~~--~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im 141 (220)
|+||++||+++||.||++|+++|...|+. .+.+ ..|++ | +.++++|.+|++|++.|++.+++++|+||++||
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~----f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM 154 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH----Y-TALDGHLSRYQNPREADPMSKVQAELDETKIIL 154 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCC----C-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccccc----c-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999973 3432 33443 5 578899999999999999999999999999999
Q ss_pred HHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027705 142 VENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 142 ~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
.+||+++|+|||+||.|++||++|+.+|+.|+++|+++++
T Consensus 155 ~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 155 HNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp ESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999996
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=223.56 Aligned_cols=119 Identities=41% Similarity=0.751 Sum_probs=115.6
Q ss_pred CceEEEEEEcCCeEEEeecCCCCChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 027705 1 MAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYL 80 (220)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 80 (220)
|+|+|||||||++|||||+..+|||..+++.+|+++++. ++|.+++.|+|.|||++++|++|+|+||++||+++||.||
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~-~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 999999999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcC
Q 027705 81 EDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSS 120 (220)
Q Consensus 81 ~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~ 120 (220)
++|+++|.+.|+.++.++.||+++.+|.+.|+++|++||+
T Consensus 133 edI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999998888899999999999999999999985
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.97 E-value=7.2e-32 Score=188.26 Aligned_cols=89 Identities=30% Similarity=0.547 Sum_probs=86.4
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027705 122 PSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLL 201 (220)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~i 201 (220)
.++|++.+++++++||+++|.+||+++++|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++++++++++++
T Consensus 2 ~~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~i 81 (91)
T 3hd7_A 2 SHMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 81 (91)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 027705 202 LYIIIAAAC 210 (220)
Q Consensus 202 l~~i~~~~c 210 (220)
+++|++++|
T Consensus 82 l~ii~~~~~ 90 (91)
T 3hd7_A 82 LIIIIVYFS 90 (91)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999999988
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=3.8e-30 Score=199.38 Aligned_cols=120 Identities=42% Similarity=0.755 Sum_probs=108.7
Q ss_pred CceEEEEEEcCCeEEEeecCCCCChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 027705 1 MAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYL 80 (220)
Q Consensus 1 M~I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL 80 (220)
|+|+|++|+||++|||||++.++||..+++.+++++++. ++|.+++.|+|.|||+.+||++|+||||++||+++||.||
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~-~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSS-CEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCC-CCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 999999999999999999999999999999999999996 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCC
Q 027705 81 EDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSN 121 (220)
Q Consensus 81 ~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~ 121 (220)
++|+++|.+.|+..+.++.||+++.+|++.|++.|+.|+++
T Consensus 123 edI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 99999999999877777789999779999999999999754
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=3.9e-31 Score=192.80 Aligned_cols=90 Identities=31% Similarity=0.539 Sum_probs=87.4
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027705 121 NPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVL 200 (220)
Q Consensus 121 ~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~ 200 (220)
.++.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|+.|+++|++++|+|||+|+|+++++++++++
T Consensus 29 ~~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~i 108 (119)
T 2kog_A 29 LTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAI 108 (119)
T ss_dssp SSSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027705 201 LLYIIIAAAC 210 (220)
Q Consensus 201 il~~i~~~~c 210 (220)
++++|++++|
T Consensus 109 ii~iIi~~~c 118 (119)
T 2kog_A 109 ILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhee
Confidence 9999999999
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.92 E-value=1.3e-24 Score=164.59 Aligned_cols=122 Identities=19% Similarity=0.289 Sum_probs=99.7
Q ss_pred CceEEEEEEcC----CeEEEeecCCC----------CCh-HHHHHHHhhhCCCCCCCceEEEeCCEEEEEE-EeCCEEEE
Q 027705 1 MAILYALVARG----TVVLAEFSAVT----------GNT-GAVARRIIEKLPAESDSRVCFSQDRYIFHIL-RSDGLTFL 64 (220)
Q Consensus 1 M~I~Ya~Iar~----~~iLae~~~~~----------~~~-~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l-~~~~~~~~ 64 (220)
|+|+|++|+|+ +++|+++++.+ ++| ..+++.+++|+++ ++|++++.|+|.|||+ .++|++|+
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence 88999999996 68999988765 444 5679999999998 5899999999999999 78999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhcCCC-ccc-CCCcccchhHHHHHHHHHHHhcCCCcchh
Q 027705 65 CMANDTFGRRIPFSYLEDIQMRFMKNYGRV-AHY-APAYAMNDEFSRVLHQQMEFFSSNPSADT 126 (220)
Q Consensus 65 ~i~d~~~~~~~af~fL~ei~~~f~~~~~~~-~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dk 126 (220)
|+||++||+++||.||++|.++|.+.|+.. |.+ ..+++ ...| +.+++.|++|+||++.|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHTSCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHhCchhhcCC
Confidence 999999999999999999999999999865 655 33111 1244 688899999999988775
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-25 Score=151.16 Aligned_cols=73 Identities=38% Similarity=0.719 Sum_probs=62.6
Q ss_pred cCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHH
Q 027705 119 SSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLL 191 (220)
Q Consensus 119 n~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~ 191 (220)
++|++.|++.+++.+|++|++||.+||+++|+|||+||.|+++|++|+.+|..|+++|++++|+|||+|+|++
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999974
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.91 E-value=1.8e-24 Score=151.94 Aligned_cols=71 Identities=32% Similarity=0.589 Sum_probs=66.3
Q ss_pred CCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHH
Q 027705 121 NPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLL 191 (220)
Q Consensus 121 ~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~ 191 (220)
.+..|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 26 ~~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 26 LTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999975
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.90 E-value=4.6e-25 Score=150.24 Aligned_cols=71 Identities=32% Similarity=0.595 Sum_probs=63.4
Q ss_pred CCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHH
Q 027705 120 SNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKL 190 (220)
Q Consensus 120 ~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~ 190 (220)
++++.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999985
No 12
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.85 E-value=1.1e-21 Score=127.58 Aligned_cols=63 Identities=32% Similarity=0.599 Sum_probs=61.3
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027705 122 PSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALW 184 (220)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
|+.|++.+++.+|++|++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++++|+||
T Consensus 1 ~~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 1 GSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 457999999999999999999999999999999999999999999999999999999999998
No 13
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.85 E-value=1.8e-21 Score=125.73 Aligned_cols=61 Identities=30% Similarity=0.602 Sum_probs=59.6
Q ss_pred chhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027705 124 ADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALW 184 (220)
Q Consensus 124 ~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
.|++.+++.+|++|++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++++|+||
T Consensus 1 gd~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 1 GSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3789999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=6.7e-20 Score=119.75 Aligned_cols=62 Identities=29% Similarity=0.595 Sum_probs=52.8
Q ss_pred CCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027705 120 SNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 120 ~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
+|++.|++.+++.+|++|++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++++|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.69 E-value=3.5e-17 Score=105.39 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=55.7
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
.++..++.++++|+++|.+||+++++|||+|+.|++||++|..+|..|++.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999999999999999999885
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.28 E-value=1.2e-09 Score=62.92 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=30.0
Q ss_pred CcchhHHHHHhhHHHHHHHHHHhHHHHHHhcc
Q 027705 122 PSADTLNRVRGEVSEIRTIMVENIEKILERGD 153 (220)
Q Consensus 122 ~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge 153 (220)
+..|++.++|.+|++|++||.+||+++|+||+
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 45689999999999999999999999999997
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.16 E-value=1.3e-06 Score=73.47 Aligned_cols=33 Identities=33% Similarity=0.714 Sum_probs=23.9
Q ss_pred cchhHHHHHhhHHHHHHHHHHhHHHHHHhccch
Q 027705 123 SADTLNRVRGEVSEIRTIMVENIEKILERGDRI 155 (220)
Q Consensus 123 ~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l 155 (220)
..|++.++|++++||++||.+|||++++|||+|
T Consensus 278 p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 368899999999999999999999999999986
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.91 E-value=2.3e-05 Score=60.64 Aligned_cols=109 Identities=15% Similarity=0.306 Sum_probs=72.2
Q ss_pred EEEEEEcCCeEEEeecCCCCC----hHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeC--CEEEEEEecCCCCcccHH
Q 027705 4 LYALVARGTVVLAEFSAVTGN----TGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSD--GLTFLCMANDTFGRRIPF 77 (220)
Q Consensus 4 ~Ya~Iar~~~iLae~~~~~~~----~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~--~~~~~~i~d~~~~~~~af 77 (220)
..+.+.+|+.||..|+..... ...+++.+|-.-.. +..++++|+|...+..+| +++|+++-..-.+-..+=
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~---~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG---GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc---CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 567889999999999644333 34556666533222 234588899999988875 699999988888888888
Q ss_pred HHHHHHHHHHHhhcCCCcc---cC----CCcccchhHHHHHHHHH
Q 027705 78 SYLEDIQMRFMKNYGRVAH---YA----PAYAMNDEFSRVLHQQM 115 (220)
Q Consensus 78 ~fL~ei~~~f~~~~~~~~~---~~----~~~~~~~~F~~~l~~~~ 115 (220)
.||+.++..|...|+.... .. .+..+...|...+++.-
T Consensus 90 ~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e 134 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAE 134 (185)
T ss_dssp HHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHH
Confidence 9999999999999953311 11 12244456665555543
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.41 E-value=0.01 Score=41.89 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 109 RVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 109 ~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+..+-+++ +.+.++++.+.++.+++.+==..+.+-|+.+|.++...++-..
T Consensus 11 ~~l~~i~eR~------~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 11 QALSEIETRH------SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555444 4478899999999998888777888899998888877665543
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.29 E-value=0.068 Score=36.34 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~ 203 (220)
+.+++.-+.+.-+-+.++=+++-+=.++-++|.+.|.....+|...++..-.-+-|+| -+.++++++++++++
T Consensus 14 v~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~----iii~~iv~~il~ii~ 86 (91)
T 3hd7_A 14 VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM----IILGVICAIILIIII 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4455555555555555555666666667778888888888888888766655444443 344444444444443
No 21
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.076 Score=38.42 Aligned_cols=56 Identities=11% Similarity=0.234 Sum_probs=43.4
Q ss_pred HHHhhhCCCCC---CCceEEE-eCCEEEEEEEe---CCEEEEEEecCCCCcccHHHHHHHHHH
Q 027705 30 RRIIEKLPAES---DSRVCFS-QDRYIFHILRS---DGLTFLCMANDTFGRRIPFSYLEDIQM 85 (220)
Q Consensus 30 ~~il~~i~~~~---~~k~~~~-~~~~~~~~l~~---~~~~~~~i~d~~~~~~~af~fL~ei~~ 85 (220)
..+++++.+-. -.|++.. .|||-.+|... ++.+|+|.+..+.|+-++...|.+++.
T Consensus 52 dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 52 DMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred heecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 44567777642 3344444 68998888772 578999999999999999999999977
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.24 E-value=0.049 Score=39.01 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=42.5
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHHH
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRALW 184 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~ 184 (220)
+.+..++..+.+.-+-+.+.=+++-+=.++-++|.+.|.....+|...++..-.-+-++|
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 99 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666777778888999999999988877655555544
No 23
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=91.55 E-value=1.9 Score=31.36 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=42.3
Q ss_pred eEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 027705 44 VCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYG 92 (220)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~ 92 (220)
-.++.+++.|-|...+++.|+++++.+.+.-..+.||..+.+.+..-++
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4467889988888889999999999999999999999998888877665
No 24
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.08 E-value=3.6 Score=30.44 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=57.9
Q ss_pred eEEEEEEc--CCeEEEee-cCCCCChH-HHHHHHhhhCCCC-CCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHH
Q 027705 3 ILYALVAR--GTVVLAEF-SAVTGNTG-AVARRIIEKLPAE-SDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPF 77 (220)
Q Consensus 3 I~Ya~Iar--~~~iLae~-~~~~~~~~-~~~~~il~~i~~~-~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af 77 (220)
|....|.. |..+|+-+ ......+. .+.+.+.+.+... +..--.++.+++.|.|...+++.|+++++.+.+.-..+
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~l 81 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITL 81 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHH
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 44445544 44566654 33322221 2333333333221 01233467889988888889999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 027705 78 SYLEDIQMRFMKNYG 92 (220)
Q Consensus 78 ~fL~ei~~~f~~~~~ 92 (220)
.||..+.+.+..-++
T Consensus 82 e~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 82 ELIHRYVELLDKYFG 96 (158)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHc
Confidence 999998888877666
No 25
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=89.60 E-value=4.6 Score=29.32 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=66.5
Q ss_pred Cc-eEEEEE-EcCCeEEEee--cCCCC-Ch--------HHH---HHHHhhhCCCCCCC---ceEEEeCCEEEE-EEEeCC
Q 027705 1 MA-ILYALV-ARGTVVLAEF--SAVTG-NT--------GAV---ARRIIEKLPAESDS---RVCFSQDRYIFH-ILRSDG 60 (220)
Q Consensus 1 M~-I~Ya~I-ar~~~iLae~--~~~~~-~~--------~~~---~~~il~~i~~~~~~---k~~~~~~~~~~~-~l~~~~ 60 (220)
|+ |.+..| .|.+.+|.+. ...+. +. .-+ +..++++..+..++ +.+...++|..| |..-.|
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 77 666554 4567787764 33221 11 111 23334443332122 355556777555 445589
Q ss_pred EEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCccc-CCCcccchhHHHHHHHHHHHhc
Q 027705 61 LTFLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVAHY-APAYAMNDEFSRVLHQQMEFFS 119 (220)
Q Consensus 61 ~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn 119 (220)
+=|+.++|+. .....-.||++|.+.|....-+..-. ..|-. ...|+..+++++++|-
T Consensus 83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~-s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIR-SSAFDRKVQFLGKKHL 140 (142)
T ss_dssp CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCC-CHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHHhc
Confidence 9999999974 23456789999998777633222111 11111 2579999999998873
No 26
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=88.06 E-value=6.1 Score=28.81 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=69.6
Q ss_pred CceEEEEEEc-CCeEEEee--cCCC--C-ChHH----------HHHHHhhhCCCC--CCCceEEEeCCEEEEEEE-eCCE
Q 027705 1 MAILYALVAR-GTVVLAEF--SAVT--G-NTGA----------VARRIIEKLPAE--SDSRVCFSQDRYIFHILR-SDGL 61 (220)
Q Consensus 1 M~I~Ya~Iar-~~~iLae~--~~~~--~-~~~~----------~~~~il~~i~~~--~~~k~~~~~~~~~~~~l~-~~~~ 61 (220)
|++++..|.. .+.+|.+. .... + +.++ -...+.+++.|. +....+++.++|..|+.. -.|+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 7777777666 55777754 3221 1 1111 134455666653 245677888888776554 5799
Q ss_pred EEEEEecCCCCcccHHHHHHHHH-HHHHhhcC-CCccc-CCCcccchhHHHHHHHHHHHh
Q 027705 62 TFLCMANDTFGRRIPFSYLEDIQ-MRFMKNYG-RVAHY-APAYAMNDEFSRVLHQQMEFF 118 (220)
Q Consensus 62 ~~~~i~d~~~~~~~af~fL~ei~-~~f~~~~~-~~~~~-~~~~~~~~~F~~~l~~~~~~y 118 (220)
=|+.++|+..+ -.-.||.+|. +.|....- +..-. ..|-. ...|+..++++++++
T Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~-s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 81 KVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ-SELFRSRLDSYVRSL 137 (145)
T ss_dssp EEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-CHHHHHHHHHHHTTS
T ss_pred EEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHhC
Confidence 99999998754 3668999999 56665222 22111 11111 257899999988765
No 27
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=87.18 E-value=7.3 Score=28.70 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred eEEEEEEc--CCeEEEeecCCC-CCh---HHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCcccH
Q 027705 3 ILYALVAR--GTVVLAEFSAVT-GNT---GAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRIP 76 (220)
Q Consensus 3 I~Ya~Iar--~~~iLae~~~~~-~~~---~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~a 76 (220)
|...+|.. |..+|+-|=... ... ..+.+.+..++.+. + .-.+..+++.+.|....++.|+++++.+.+.-..
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~-~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT-D-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSC-C-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-C-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 44455554 567777654432 222 22344455554443 3 2457789999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027705 77 FSYLEDIQMRFMKNY 91 (220)
Q Consensus 77 f~fL~ei~~~f~~~~ 91 (220)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988888777
No 28
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=86.48 E-value=12 Score=32.24 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=42.7
Q ss_pred eEEEeCCEEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 027705 44 VCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYG 92 (220)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~~ 92 (220)
-.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+.+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567889988888889999999999999998999999999888877666
No 29
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.59 E-value=4.8 Score=34.69 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=59.5
Q ss_pred CceEEEEEEc-CCeEEEe--ecC-CCCC-hHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEEeCCEEEEEEecCCCCccc
Q 027705 1 MAILYALVAR-GTVVLAE--FSA-VTGN-TGAVARRIIEKLPAESDSRVCFSQDRYIFHILRSDGLTFLCMANDTFGRRI 75 (220)
Q Consensus 1 M~I~Ya~Iar-~~~iLae--~~~-~~~~-~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~~~~~~~~~i~d~~~~~~~ 75 (220)
|-|....|.. .+.++.+ |.. .+.+ .+.+-+.++.+.... ..--.++.+++.|.|...+++.|+|+++.+.+.-.
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEG-MLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTS-CCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccC-CCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 4466666665 4555443 332 2222 233344445432211 22345678899888888899999999999999889
Q ss_pred HHHHHHHHHHHHHhhcC
Q 027705 76 PFSYLEDIQMRFMKNYG 92 (220)
Q Consensus 76 af~fL~ei~~~f~~~~~ 92 (220)
.+.||..+.+.+..-++
T Consensus 80 ~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988887665
No 30
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=84.42 E-value=8.1 Score=26.71 Aligned_cols=8 Identities=63% Similarity=0.900 Sum_probs=3.7
Q ss_pred HHHHHHhC
Q 027705 204 IIIAAACG 211 (220)
Q Consensus 204 ~i~~~~cg 211 (220)
+|+..++|
T Consensus 98 ~i~~~~~~ 105 (109)
T 3hd7_B 98 IIIASTIG 105 (109)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 33444554
No 31
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=83.04 E-value=2.5 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 027705 195 TGLIVLLLYIIIAAACGGI 213 (220)
Q Consensus 195 ~~iv~~il~~i~~~~cgg~ 213 (220)
++++++.+.+.+++-||.|
T Consensus 19 ~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 19 GGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3444555556677899877
No 32
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=82.90 E-value=0.78 Score=29.75 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred chHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 154 RIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 154 ~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
+++.+.+...+.-.++..|-+.+++=.|+-.++-.|...+..+++-++-|+|
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777777778888888777766665555554444
No 33
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=81.50 E-value=1.1 Score=29.55 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=26.5
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 163 ATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 163 ~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
.+.-.++..|-+.+++=.|+-.++-.|...+..+++-++-|+|
T Consensus 26 ~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 26 VEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555567777777777777666666665654
No 34
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.46 E-value=1.5 Score=26.59 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 027705 195 TGLIVLLLYIIIAAACGGI 213 (220)
Q Consensus 195 ~~iv~~il~~i~~~~cgg~ 213 (220)
++++++.+.+.+++-||.|
T Consensus 21 ~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3444555566678899877
No 35
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=81.19 E-value=1.6 Score=26.41 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 027705 195 TGLIVLLLYIIIAAACGGI 213 (220)
Q Consensus 195 ~~iv~~il~~i~~~~cgg~ 213 (220)
++++++.+.+.+++-||.|
T Consensus 18 ~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 18 AGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3444555566677899876
No 36
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=76.92 E-value=9.6 Score=25.82 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=32.1
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGA 169 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s 169 (220)
...+..+|+++++-|.+-|+.+-..=..||.+..++..|...|
T Consensus 38 farLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 38 FARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4688999999999999999888777777776665555554333
No 37
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=76.81 E-value=0.57 Score=29.90 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=34.0
Q ss_pred hHHHHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027705 155 IELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYIII 206 (220)
Q Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i~ 206 (220)
++.+.+...+.-.++..|-+.++|=.|+..++-.|...+..+++-++-|+|-
T Consensus 4 ~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~Ik 55 (68)
T 2wwb_B 4 VMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVK 55 (68)
T ss_dssp SSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566677777777777777788877777666666666666543
No 38
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=74.74 E-value=14 Score=23.65 Aligned_cols=42 Identities=7% Similarity=0.221 Sum_probs=33.5
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
+.+.+++..+.++.+++.+==..+.+-|+-||.++...++-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 447888999999999988877788889988888777665544
No 39
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=72.07 E-value=27 Score=25.75 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHhhhCCCCC--CCceEEEeCCEEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHhhc-CCC-----cccC
Q 027705 29 ARRIIEKLPAES--DSRVCFSQDRYIFHILR-SDGLTFLCMANDTFGRRIPFSYLEDIQM-RFMKNY-GRV-----AHYA 98 (220)
Q Consensus 29 ~~~il~~i~~~~--~~k~~~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~ei~~-~f~~~~-~~~-----~~~~ 98 (220)
.+.+.+++.+.. +.-..++.+.|..|+.. -.|+-|++++|+..+ -.-.+|.+|.. .|.... .+. .-..
T Consensus 51 L~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~ 128 (159)
T 3cue_C 51 LRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAEN 128 (159)
T ss_dssp HHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCS
T ss_pred HHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 355566777642 45566778888777654 479999999998744 45578999997 666522 221 1100
Q ss_pred ---------CCcccchhHHHHHHHHHHHh
Q 027705 99 ---------PAYAMNDEFSRVLHQQMEFF 118 (220)
Q Consensus 99 ---------~~~~~~~~F~~~l~~~~~~y 118 (220)
.|-. ...|+..++++++.+
T Consensus 129 ~~~~~~~~~~pI~-s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 129 ENEMRGQGTRKIT-NRNFISVLESFLAPM 156 (159)
T ss_dssp CTTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred ccccccccCcCcc-cHHHHHHHHHHHHhc
Confidence 1111 257888888887655
No 40
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=70.30 E-value=37 Score=26.56 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=48.7
Q ss_pred CceEEEeCCEEEEEE-EeCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhc-CCCcc-
Q 027705 42 SRVCFSQDRYIFHIL-RSDGLTFLCMANDTFGR----------------------RIPFSYLEDIQMRFMKNY-GRVAH- 96 (220)
Q Consensus 42 ~k~~~~~~~~~~~~l-~~~~~~~~~i~d~~~~~----------------------~~af~fL~ei~~~f~~~~-~~~~~- 96 (220)
+-..+..+.|..|+. .-.|+=|++++|+..+. ..+-.||.+|...|.+.. .+..-
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 456677787766544 45799999999987633 446789999998777622 22210
Q ss_pred cCCCcccchhHHHHHHHHHHHh
Q 027705 97 YAPAYAMNDEFSRVLHQQMEFF 118 (220)
Q Consensus 97 ~~~~~~~~~~F~~~l~~~~~~y 118 (220)
-..|-. ...|+..++.+.+.+
T Consensus 198 ~~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCC-CHHHHHHHHHHHHHH
T ss_pred CCCccc-cHHHHHHHHHHHHhc
Confidence 011111 257888888887765
No 41
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=69.80 E-value=38 Score=26.49 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHhhhCCCC--CCCceEEEeCCEEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhc-CCCccc-CCCcccch
Q 027705 31 RIIEKLPAE--SDSRVCFSQDRYIFHILR-SDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNY-GRVAHY-APAYAMND 105 (220)
Q Consensus 31 ~il~~i~~~--~~~k~~~~~~~~~~~~l~-~~~~~~~~i~d~~~~~~~af~fL~ei~~~f~~~~-~~~~~~-~~~~~~~~ 105 (220)
.+-+++.|. +.+-..++.+.|..|+.. -.|+-|++++|+. ....-.||.++.+.|.... .+..-. ..|-. ..
T Consensus 120 ~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s~ 196 (219)
T 2j3t_D 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-CE 196 (219)
T ss_dssp HHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-CH
T ss_pred HHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-hH
Confidence 334576663 134567888888776554 5799999999986 4457789999998777642 222111 11111 25
Q ss_pred hHHHHHHHHHHHhcCC
Q 027705 106 EFSRVLHQQMEFFSSN 121 (220)
Q Consensus 106 ~F~~~l~~~~~~yn~~ 121 (220)
.|+..++++++.++..
T Consensus 197 ~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 197 LFDQNLKLALEVAEKA 212 (219)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhcc
Confidence 7999999999988653
No 42
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.66 E-value=17 Score=22.49 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHh
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQ 175 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~ 175 (220)
+..+...+.+..+-+.+.-+++-+=.++-+.|.+.+++.+.+|..+++.
T Consensus 13 v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 13 ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666677777777777788888888888888888877643
No 43
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=68.87 E-value=17 Score=22.23 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 133 EVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 133 ~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
.+..++.-+.+..+-+.++-+++-.=.++-+.|.+.|......|...++..
T Consensus 5 ~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444444444455555556666666665555544
No 44
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=64.29 E-value=3.1 Score=25.79 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHhhhhhhhhHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027705 158 LVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 158 L~~ks~~L~~~s~~f~~~a~~l~r~~~~~~~k~~~ii~~iv~~il~~i 205 (220)
+.+...+.-.++..+-+.++|=.|+-..+-.|...+..+++-++-|+|
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666777777777777777777777666665555554444
No 45
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=64.23 E-value=22 Score=21.66 Aligned_cols=50 Identities=8% Similarity=0.213 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHHH
Q 027705 134 VSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRAL 183 (220)
Q Consensus 134 v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~~ 183 (220)
+..++.-+.+-.+-+.++-+++-.=.++-+.|.+.|......|...++..
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443334444444555555555555555443
No 46
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=64.20 E-value=30 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSK 177 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~ 177 (220)
+..++..+.+.-+-+.+.=+++-+=.++-+.|.+.|.....+|...++..-
T Consensus 39 ldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmw 89 (96)
T 1sfc_A 39 VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455555566666666666666655443
No 47
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=64.18 E-value=4.3 Score=20.74 Aligned_cols=24 Identities=25% Similarity=0.655 Sum_probs=15.7
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHhccchH
Q 027705 129 RVRGEVSEIRTIMVENIEKILERGDRIE 156 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~k~l~Rge~l~ 156 (220)
.++.++.+++ .+||.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4566666655 47788887766653
No 48
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=56.75 E-value=31 Score=21.83 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSK 177 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~ 177 (220)
+..++.-+.+.-+-+.+.=+++-+=.++-+.|...|......|...++..-
T Consensus 17 l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 17 VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555556667778888888888888776553
No 49
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=56.58 E-value=34 Score=21.40 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=34.5
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+.+++..+.++.+++.+==..+.+-|+-||.++...++-..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4577889999999999888777888899998888877665554
No 50
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=55.78 E-value=19 Score=23.44 Aligned_cols=31 Identities=6% Similarity=0.274 Sum_probs=9.6
Q ss_pred hccchHHHHHhhhhhhhhHHHHHHhHHHHHH
Q 027705 151 RGDRIELLVDKTATMQDGAFHFRKQSKRLRR 181 (220)
Q Consensus 151 Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (220)
.|++.+...++-+.+.+....|.++++++=+
T Consensus 7 k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk 37 (80)
T 2ww9_B 7 KGEEKKQSNNQVEKLVEAPVEFVREGTQFLA 37 (80)
T ss_dssp --------------CCHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555566666666655433
No 51
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=51.39 E-value=22 Score=22.74 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=9.8
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~ 203 (220)
|...++.-++...|++++-
T Consensus 16 Y~tLRigGLifA~vLfi~G 34 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLCVIG 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHheeccchhHHHHHHHH
Confidence 4555655555554444443
No 52
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=49.27 E-value=19 Score=19.67 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027705 192 ALLTGLIVLLLYIIIAA 208 (220)
Q Consensus 192 ~ii~~iv~~il~~i~~~ 208 (220)
.++++++++++-++++.
T Consensus 7 ~ivalivalIiaIVVWt 23 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWS 23 (36)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555544444443
No 53
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=47.14 E-value=31 Score=18.25 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 027705 187 NAKLLALLTGLIVLLLYIIIA 207 (220)
Q Consensus 187 ~~k~~~ii~~iv~~il~~i~~ 207 (220)
+.|-.+|+.+++++++.+|+.
T Consensus 9 ~lKrLlivVvVvVlvVvVivG 29 (35)
T 1spf_A 9 NLKRLLVVVVVVVLVVVVIVG 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chheEEEEEeeehhhHHHHHH
Confidence 344455555555555555544
No 54
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=46.94 E-value=38 Score=23.12 Aligned_cols=42 Identities=21% Similarity=0.471 Sum_probs=30.4
Q ss_pred eEEEEEEcCCeEEEeecCCCCChHHHHHHHhhhCCCCCCCceEEEeCCEEEEEEE
Q 027705 3 ILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPAESDSRVCFSQDRYIFHILR 57 (220)
Q Consensus 3 I~Ya~Iar~~~iLae~~~~~~~~~~~~~~il~~i~~~~~~k~~~~~~~~~~~~l~ 57 (220)
|+|..|+++.. |++++..|. ++.-+ .+.-+++++|..||...
T Consensus 86 iiyltiskdni--cqfsdekge----------qidin-sqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 86 IIYLTISKDNI--CQFSDEKGE----------QIDIN-SQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEECTTCC--EEEECTTSC----------EECCC-SSSSEEEETTEEEEEEE
T ss_pred EEEEEEecCcc--eecccccCc----------Eeecc-ccccceeecceEeehhc
Confidence 77888888764 677776653 33444 56678999999999864
No 55
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=46.26 E-value=21 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHhHHHHHHhccc
Q 027705 131 RGEVSEIRTIMVENIEKILERGDR 154 (220)
Q Consensus 131 ~~~v~~v~~im~~ni~k~l~Rge~ 154 (220)
.++++++++|+..|+.++-+|.-.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~S 29 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLRS 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 467999999999999999888643
No 56
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=46.18 E-value=51 Score=20.42 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=35.6
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+.+++..+.++.+++.+==..+.+-|+-||.++...++-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQL 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4478899999999999888777888999999998887776554
No 57
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=46.15 E-value=27 Score=17.76 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.4
Q ss_pred cchhHHHHHhhHHHHHHHHHHh
Q 027705 123 SADTLNRVRGEVSEIRTIMVEN 144 (220)
Q Consensus 123 ~~dkl~~~~~~v~~v~~im~~n 144 (220)
..+|+.-++.++++-++|..++
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999888775
No 58
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=45.34 E-value=9.9 Score=18.75 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhh
Q 027705 177 KRLRRALWMKNA 188 (220)
Q Consensus 177 ~~l~r~~~~~~~ 188 (220)
..++|+||..+.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899998875
No 59
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=43.38 E-value=56 Score=20.12 Aligned_cols=43 Identities=9% Similarity=0.252 Sum_probs=35.4
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
+.+.+++..+.++.+++.+==..+.+-|+-||.++...+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4578899999999999888777888999999998887766544
No 60
>2h8b_B Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_B 2k6u_B
Probab=43.02 E-value=19 Score=18.96 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=9.8
Q ss_pred HHHHHhCCCCCCC
Q 027705 205 IIAAACGGITLPS 217 (220)
Q Consensus 205 i~~~~cgg~~~~~ 217 (220)
.++.+|||.+|++
T Consensus 17 a~I~vCG~s~w~~ 29 (31)
T 2h8b_B 17 ALVRVCGGPRWST 29 (31)
T ss_dssp HHHHHHCTTTCSS
T ss_pred HHHHHcCCCCcCC
Confidence 3567999998853
No 61
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.84 E-value=39 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=9.9
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLLY 203 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~ 203 (220)
|...++.-++...|++++-
T Consensus 14 Y~tLRigGLifA~vLfi~G 32 (67)
T 2jp3_A 14 WESLQLGGLIFGGLLCIAG 32 (67)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHHHHHHH
Confidence 4555655555555444443
No 62
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=39.29 E-value=6.3 Score=27.94 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLLYIII 206 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~~i~ 206 (220)
++.+.+.++++++++++++++|
T Consensus 102 ~~~~~~~~i~~~~~i~i~~~~~ 123 (130)
T 3fym_A 102 SKEPIQLLVIMGITVLITLLLW 123 (130)
T ss_dssp ----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444443
No 63
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=37.77 E-value=8.2 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027705 190 LLALLTGLIVLLLYIIIAAAC 210 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~~~~c 210 (220)
+.+++++++.+++|+-+..+|
T Consensus 10 ~LivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 335777777777777666676
No 64
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=35.95 E-value=34 Score=22.03 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQS 176 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a 176 (220)
+..++..+.+.-+-+.+.=+++-+=.++-+.|.+.|.....+|...++..
T Consensus 24 l~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 24 VEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555556666666667788888999988888876543
No 65
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=35.66 E-value=87 Score=21.71 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCc----chhHHHHHhhHHHHH
Q 027705 76 PFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPS----ADTLNRVRGEVSEIR 138 (220)
Q Consensus 76 af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~----~dkl~~~~~~v~~v~ 138 (220)
+-.=+.+....|...|..........++ ..+...|..+--+|+..++ .+....+.++++++.
T Consensus 39 a~~~ar~~ind~vsrYRr~~~v~g~~Sf-ttm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE 104 (113)
T 2y6x_A 39 AQAEARKKLNDFFALYRRDDSLRSLSSF-MTMQTALNSLAGHYSSYPNRPLPEKLKARLEQEFKQVE 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSHHH-HHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4444555556677777543222222233 4566788888888875432 233356666666654
No 66
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=35.12 E-value=66 Score=22.42 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCc----chhHHHHHhhHHHHH
Q 027705 74 RIPFSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPS----ADTLNRVRGEVSEIR 138 (220)
Q Consensus 74 ~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~----~dkl~~~~~~v~~v~ 138 (220)
+-+-.=+.+....|...|..+.......++ ..+...|..+--+|+..++ .+....+.++++++.
T Consensus 41 ~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE 108 (115)
T 2kmf_A 41 QEVQDTARGQINDYISRYRRKGDAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAE 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHCSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 334445555556677777532122222233 4566788888888864322 233456677776654
No 67
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=33.37 E-value=54 Score=20.68 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=8.4
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLL 202 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il 202 (220)
|...++.-++..+|++++
T Consensus 13 Y~tLRiGGLifA~vLfi~ 30 (72)
T 2jo1_A 13 YQSLQIGGLVIAGILFIL 30 (72)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHhhccchHHHHHHHHH
Confidence 444555545444444444
No 68
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=33.16 E-value=23 Score=18.04 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=7.5
Q ss_pred HHHHHhCCCCC
Q 027705 205 IIAAACGGITL 215 (220)
Q Consensus 205 i~~~~cgg~~~ 215 (220)
.++.+|||.+|
T Consensus 17 a~I~vCG~srw 27 (27)
T 2fhw_B 17 AVIFTCGGSRW 27 (27)
T ss_dssp HHHHHHTSSCC
T ss_pred HHHHhhcccCC
Confidence 34678988754
No 69
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=31.94 E-value=26 Score=28.25 Aligned_cols=34 Identities=26% Similarity=0.137 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHh
Q 027705 177 KRLRRALWMKNAKLLALLTGLIVLLL-YIIIAAAC 210 (220)
Q Consensus 177 ~~l~r~~~~~~~k~~~ii~~iv~~il-~~i~~~~c 210 (220)
.+-.+|.|+++.-.++++++++++++ ..+....+
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 59 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFIGIMYFLS 59 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777665555554444443 33333344
No 70
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=31.45 E-value=91 Score=19.02 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHHHH
Q 027705 132 GEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLRRA 182 (220)
Q Consensus 132 ~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~ 182 (220)
..+..++.-+.+-.+-+.++=+++-.=.++-+.|.+.|......|...++.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~ 59 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTT 59 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444444444455555666666555555544
No 71
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=31.34 E-value=90 Score=18.98 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=35.1
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDG 168 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~ 168 (220)
..+.+++..+.++.+++.+==..+.+-|+-||.++...++-...
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778899999999998887777888999999888877665543
No 72
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.07 E-value=1.1e+02 Score=19.78 Aligned_cols=47 Identities=11% Similarity=0.235 Sum_probs=37.6
Q ss_pred cchhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhH
Q 027705 123 SADTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGA 169 (220)
Q Consensus 123 ~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s 169 (220)
..+.......-+++.+++....+..+..-||.|+..+...+.+...-
T Consensus 25 sl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl 71 (83)
T 1l4a_C 25 SLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDM 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888899999999999999999999888888776543
No 73
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=28.76 E-value=92 Score=18.25 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.2
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhH
Q 027705 129 RVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGA 169 (220)
Q Consensus 129 ~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s 169 (220)
....-+.++.++-.+.+..+-+.||.|+...+.-++.....
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 34566788888999999999999999998887777665443
No 74
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.45 E-value=76 Score=16.89 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.3
Q ss_pred HHHHhhhhh
Q 027705 157 LLVDKTATM 165 (220)
Q Consensus 157 ~L~~ks~~L 165 (220)
.|++|-+.|
T Consensus 5 QLE~kVEeL 13 (34)
T 2oxj_A 5 QLEXKVXEL 13 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 75
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=27.04 E-value=1.3e+02 Score=19.28 Aligned_cols=43 Identities=9% Similarity=0.252 Sum_probs=34.9
Q ss_pred hhHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhh
Q 027705 125 DTLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 125 dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
..+.+++..+.++.+++.+==..+.+-|+-||.++...+.-..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4478899999999999888777888899999888877766544
No 76
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=26.79 E-value=62 Score=20.69 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCc-chhHHHHHhhHHHHHHHHHHhHHHHHHh
Q 027705 110 VLHQQMEFFSSNPS-ADTLNRVRGEVSEIRTIMVENIEKILER 151 (220)
Q Consensus 110 ~l~~~~~~yn~~~~-~dkl~~~~~~v~~v~~im~~ni~k~l~R 151 (220)
.-+..+++|+.++. .+...++++-++....-=..||.+++++
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566778876543 3445566777776666666677776654
No 77
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=26.74 E-value=49 Score=26.41 Aligned_cols=41 Identities=7% Similarity=0.222 Sum_probs=29.9
Q ss_pred hHHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhh
Q 027705 126 TLNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQ 166 (220)
Q Consensus 126 kl~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~ 166 (220)
.+.+++..+.++.+++.+==..+.+-|+-|+.++...+.-.
T Consensus 201 ~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 201 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35666777777777776655677889999998888776544
No 78
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=26.49 E-value=50 Score=17.33 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=9.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 027705 185 MKNAKLLALLTGLIVLLLYII 205 (220)
Q Consensus 185 ~~~~k~~~ii~~iv~~il~~i 205 (220)
|...+.--.+...+++++.++
T Consensus 7 y~tLrigGLi~a~vLfi~gi~ 27 (31)
T 3n2f_G 7 YETVRNGGLIFAALAFIVGLI 27 (31)
T ss_dssp HHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHhhcchhHHHHHHHHHHH
Confidence 344554444444444444443
No 79
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=25.76 E-value=58 Score=24.88 Aligned_cols=88 Identities=9% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHHHHh------hcCCCcccCCCcccc------hhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHH
Q 027705 71 FGRRIPFSYLEDIQMRFMK------NYGRVAHYAPAYAMN------DEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIR 138 (220)
Q Consensus 71 ~~~~~af~fL~ei~~~f~~------~~~~~~~~~~~~~~~------~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~ 138 (220)
..+.+....|++|...|.. .|+.. .+..-..++ .+|...|+++...- +...++.|+++-
T Consensus 12 Lsq~m~~~LLe~i~~~YddY~~fC~~f~~~-n~E~l~eLQ~v~~Dl~~F~~QL~qL~~~~--------i~~Tre~v~d~l 82 (204)
T 2jqq_A 12 LSQKMVQTLLEQIRSNYDDYLTFSNTYTDE-ENETLINLEKTQSDLQKFMTQLDHLIKDD--------ISNTQEIIKDVL 82 (204)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHS--------CSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhHHHHHHHHH
Confidence 4455666788888876543 33221 111111121 35555666655431 222334444444
Q ss_pred HHHH--HhHHHHHHhccchHHHHHhhhhhhh
Q 027705 139 TIMV--ENIEKILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 139 ~im~--~ni~k~l~Rge~l~~L~~ks~~L~~ 167 (220)
+-+. ++|...|+....|..+..-+..|+.
T Consensus 83 ~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~ 113 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQLTEALSLGKRLSK 113 (204)
T ss_dssp HHHHHHHHHHHTCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3332 4566666666666666666665553
No 80
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=25.46 E-value=72 Score=19.36 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=6.8
Q ss_pred HHHhHHHHHHHHHHHhh
Q 027705 172 FRKQSKRLRRALWMKNA 188 (220)
Q Consensus 172 f~~~a~~l~r~~~~~~~ 188 (220)
|.++.++-=++-.|..-
T Consensus 9 f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 9 FAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHhheeccCC
Confidence 33444433334444433
No 81
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=25.26 E-value=33 Score=19.76 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHH-hcCCCcchhHHHHHhhHHHHHHHHHHhH
Q 027705 106 EFSRVLHQQMEF-FSSNPSADTLNRVRGEVSEIRTIMVENI 145 (220)
Q Consensus 106 ~F~~~l~~~~~~-yn~~~~~dkl~~~~~~v~~v~~im~~ni 145 (220)
++...|..+|.. |........+...+.+++...+|+.++.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 345677777754 4222223445566788999998888764
No 82
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.72 E-value=61 Score=17.51 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027705 190 LLALLTGLIVLLLYIII 206 (220)
Q Consensus 190 ~~~ii~~iv~~il~~i~ 206 (220)
...|++.++.+++++|+
T Consensus 7 ~~sIaagVvglll~vii 23 (35)
T 1iij_A 7 VTFIIATVVGVLLFLIL 23 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHHHH
Confidence 34455555554444443
No 83
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=24.55 E-value=2.7e+02 Score=22.17 Aligned_cols=85 Identities=9% Similarity=0.156 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCcccchhHHHHHHHHHHHhcCCCcchhHHHHHhhHHHHHHHHHHhHHHHHHhccchH
Q 027705 77 FSYLEDIQMRFMKNYGRVAHYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLNRVRGEVSEIRTIMVENIEKILERGDRIE 156 (220)
Q Consensus 77 f~fL~ei~~~f~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~~~~~v~~v~~im~~ni~k~l~Rge~l~ 156 (220)
..|+.++........ ....||.+ .-+...|...+.... ..+..++..+..+-+-+..+|+. ++|+
T Consensus 103 ~~f~~~l~~~l~~~~----~~~lPFEf-raLEa~L~~v~~~Le-----~e~~~l~~~~~~~L~~L~~~i~~-----~~L~ 167 (261)
T 3rkg_A 103 SVLMYDLESKLSSTK----NNSQFYEH-RALESIFINVMSALE-----TDFKLHSQICIQILNDLENEVNR-----LKLR 167 (261)
T ss_dssp HHHHHHHHHHHHCSS----CCSSCHHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSCCH-----HHHH
T ss_pred HHHHHHHHHHhccCC----CCCCChHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCH-----HHHH
Confidence 357777777665421 23456655 233344444444332 22333333333333333333321 4555
Q ss_pred HHHHhhhhhhhhHHHHHHhHHHHH
Q 027705 157 LLVDKTATMQDGAFHFRKQSKRLR 180 (220)
Q Consensus 157 ~L~~ks~~L~~~s~~f~~~a~~l~ 180 (220)
.|..++..| ..|.++++.++
T Consensus 168 ~Ll~~~k~L----~~~~~kv~~vr 187 (261)
T 3rkg_A 168 HLLIKSKDL----TLFYQKTLLIR 187 (261)
T ss_dssp HHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHhHHH----HHHHHHHHHHH
Confidence 554444444 44444444444
No 84
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.87 E-value=52 Score=18.79 Aligned_cols=7 Identities=0% Similarity=0.439 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027705 193 LLTGLIV 199 (220)
Q Consensus 193 ii~~iv~ 199 (220)
|++++|-
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 85
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.33 E-value=3.2e+02 Score=24.46 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=15.5
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHhh
Q 027705 165 MQDGAFHFRKQSKRLRRALWMKNA 188 (220)
Q Consensus 165 L~~~s~~f~~~a~~l~r~~~~~~~ 188 (220)
|..+=+.|+.+-+++..+|-..+-
T Consensus 517 ~~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777755443
No 86
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=23.30 E-value=2.2e+02 Score=20.76 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=45.3
Q ss_pred EEEcCCeEEEe-----ecCCCCChHH----------HHHHHhhhCCCCCCCceEEEeC-CEEEEEEEeCCEEEEEEecCC
Q 027705 7 LVARGTVVLAE-----FSAVTGNTGA----------VARRIIEKLPAESDSRVCFSQD-RYIFHILRSDGLTFLCMANDT 70 (220)
Q Consensus 7 ~Iar~~~iLae-----~~~~~~~~~~----------~~~~il~~i~~~~~~k~~~~~~-~~~~~~l~~~~~~~~~i~d~~ 70 (220)
++.+++.+++. ....+ +.+. .++.+.+.+....-....++.+ ++.|-.-..++..-+++++++
T Consensus 34 lvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla~~~ 112 (163)
T 1j3w_A 34 LIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDET 112 (163)
T ss_dssp EEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEECTT
T ss_pred EEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEeCCC
Confidence 44569999998 44433 5432 2344445555542333445544 566655566888888999999
Q ss_pred CCcccHHHHHHHHH
Q 027705 71 FGRRIPFSYLEDIQ 84 (220)
Q Consensus 71 ~~~~~af~fL~ei~ 84 (220)
.+--...-.+.+..
T Consensus 113 a~lG~v~~~m~~~v 126 (163)
T 1j3w_A 113 APLGKVKLHGKRAS 126 (163)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 88544444444333
No 87
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.78 E-value=88 Score=19.30 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=9.9
Q ss_pred HHHhccchHHHHHhhhhhhh
Q 027705 148 ILERGDRIELLVDKTATMQD 167 (220)
Q Consensus 148 ~l~Rge~l~~L~~ks~~L~~ 167 (220)
++++|++|..|.+.+.....
T Consensus 7 LveNgekI~~L~~~v~~~e~ 26 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKL 26 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444443
No 88
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=22.57 E-value=58 Score=20.38 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCc-chhHHHHHhhHHHHHHHHHHhHHHHHHh
Q 027705 110 VLHQQMEFFSSNPS-ADTLNRVRGEVSEIRTIMVENIEKILER 151 (220)
Q Consensus 110 ~l~~~~~~yn~~~~-~dkl~~~~~~v~~v~~im~~ni~k~l~R 151 (220)
.-+..+++|+.++. .+...++++-++....-=..|+.+++++
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35566777876543 3444566666665555555566666543
No 89
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=21.40 E-value=72 Score=20.33 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHhcCCCcch
Q 027705 105 DEFSRVLHQQMEFFSSNPSAD 125 (220)
Q Consensus 105 ~~F~~~l~~~~~~yn~~~~~d 125 (220)
..|...+++++++||.|-..|
T Consensus 28 ~RFQ~~Mq~lieKYn~PFeD~ 48 (81)
T 3r45_C 28 RRFQRRMQRLIEKYNQPFEDT 48 (81)
T ss_dssp HHHHHHHHHHHHHHCSCCTTS
T ss_pred HHHHHHHHHHHHHcCCCCCCC
Confidence 478889999999998875543
No 90
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=20.85 E-value=1.3e+02 Score=17.15 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 027705 198 IVLLLYIII 206 (220)
Q Consensus 198 v~~il~~i~ 206 (220)
.++++++|+
T Consensus 41 cllli~iiv 49 (52)
T 1fjk_A 41 FLLLICIIV 49 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 91
>2kbc_B INSL5_B-chain; peptide hormone, relaxin, insulin-like fold; HET: PCA; NMR {Synthetic}
Probab=20.72 E-value=11 Score=19.13 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=6.9
Q ss_pred HHHHhCCCCCC
Q 027705 206 IAAACGGITLP 216 (220)
Q Consensus 206 ~~~~cgg~~~~ 216 (220)
++.+|||.+|.
T Consensus 15 ~I~vCG~s~w~ 25 (26)
T 2kbc_B 15 VIYICASSRWX 25 (26)
T ss_dssp HHHHHHHHHC-
T ss_pred HHhhcCCCccc
Confidence 45688876653
No 92
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.11 E-value=1.7e+02 Score=18.25 Aligned_cols=54 Identities=4% Similarity=0.011 Sum_probs=40.4
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhccchHHHHHhhhhhhhhHHHHHHhHHHHH
Q 027705 127 LNRVRGEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDGAFHFRKQSKRLR 180 (220)
Q Consensus 127 l~~~~~~v~~v~~im~~ni~k~l~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~ 180 (220)
....-.-.++..++=...+..+-+-||+|+..+..-+.+..+.+.=.+..+.|+
T Consensus 14 Trr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 14 TRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455567777777888899999999999988888888777766655555554
Done!