Your job contains 1 sequence.
>027706
MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAA
LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP
KRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG
GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027706
(220 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 724 4.1e-79 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 195 6.8e-19 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 198 9.2e-19 2
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 163 2.0e-18 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 196 6.2e-18 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 196 6.3e-18 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 190 1.0e-17 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 188 1.4e-17 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 179 2.9e-17 2
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 171 4.0e-17 3
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 176 4.0e-17 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 181 7.7e-17 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 158 5.7e-16 3
FB|FBgn0025790 - symbol:TBPH "TAR DNA-binding protein-43 ... 168 6.3e-16 3
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 161 9.1e-16 3
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 168 1.3e-15 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 176 1.7e-15 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 179 2.3e-15 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 166 3.4e-15 2
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 165 4.8e-15 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 163 4.9e-15 2
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 163 5.7e-15 2
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 172 6.9e-15 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 161 7.2e-15 2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 161 7.9e-15 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 157 9.5e-15 3
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 163 1.3e-14 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 191 1.9e-14 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 154 2.9e-14 3
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 165 4.4e-14 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 159 6.3e-14 3
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 160 6.7e-14 2
GENEDB_PFALCIPARUM|PF11_0083 - symbol:PF11_0083 "nucleic ... 189 6.9e-14 1
UNIPROTKB|Q8IIT2 - symbol:PF11_0083 "Nucleic acid binding... 189 6.9e-14 1
FB|FBgn0036496 - symbol:CG7804 species:7227 "Drosophila m... 162 7.6e-14 2
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 160 8.2e-14 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 160 9.7e-14 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 164 1.2e-13 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 164 1.3e-13 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 164 1.3e-13 2
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 160 1.3e-13 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 184 1.5e-13 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 160 1.5e-13 2
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 159 1.8e-13 2
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 156 2.0e-13 2
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 156 2.2e-13 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 161 2.4e-13 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 161 2.7e-13 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 161 2.7e-13 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 161 2.7e-13 2
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 156 2.9e-13 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 159 2.9e-13 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 159 2.9e-13 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 159 2.9e-13 2
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 159 3.7e-13 2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 159 7.3e-13 2
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 159 7.3e-13 2
UNIPROTKB|F1LW17 - symbol:F1LW17 "Uncharacterized protein... 149 9.7e-13 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 159 1.0e-12 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 176 1.3e-12 1
UNIPROTKB|F1LUE7 - symbol:F1LUE7 "Uncharacterized protein... 149 1.3e-12 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 160 1.7e-12 2
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 156 2.1e-12 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 153 2.3e-12 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 171 2.9e-12 1
WB|WBGene00022235 - symbol:sqd-1 species:6239 "Caenorhabd... 167 3.6e-12 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 158 7.5e-12 2
UNIPROTKB|H0YHB7 - symbol:MSI1 "RNA-binding protein Musas... 160 1.2e-11 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 152 1.7e-11 2
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 150 1.9e-11 2
UNIPROTKB|K7EJ88 - symbol:DAZAP1 "DAZ-associated protein ... 161 2.0e-11 1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ... 156 2.2e-11 1
UNIPROTKB|E2QS43 - symbol:TARDBP "Uncharacterized protein... 163 2.3e-11 1
UNIPROTKB|G3MX91 - symbol:TARDBP "Uncharacterized protein... 163 2.3e-11 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 147 5.8e-11 2
UNIPROTKB|Q2KJ45 - symbol:TARDBP "Uncharacterized protein... 160 6.0e-11 1
UNIPROTKB|B4DJ45 - symbol:TARDBP "cDNA FLJ58188, highly s... 160 6.0e-11 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 147 6.4e-11 2
UNIPROTKB|I3L7S7 - symbol:LOC100621383 "Uncharacterized p... 159 7.4e-11 1
UNIPROTKB|F1N235 - symbol:F1N235 "Uncharacterized protein... 144 7.5e-11 2
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 144 1.1e-10 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 160 1.1e-10 1
UNIPROTKB|E9PSU5 - symbol:E9PSU5 "Uncharacterized protein... 150 1.1e-10 2
UNIPROTKB|D4ACP9 - symbol:D4ACP9 "Uncharacterized protein... 148 1.2e-10 2
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 150 1.3e-10 2
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 150 1.3e-10 2
UNIPROTKB|D4A1X0 - symbol:D4A1X0 "Uncharacterized protein... 147 1.3e-10 2
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 147 1.4e-10 2
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 147 1.4e-10 2
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 147 1.4e-10 2
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 147 1.4e-10 2
ZFIN|ZDB-GENE-030131-3777 - symbol:tardbp "TAR DNA bindin... 160 1.4e-10 1
UNIPROTKB|Q13148 - symbol:TARDBP "TAR DNA-binding protein... 160 1.5e-10 1
MGI|MGI:2387629 - symbol:Tardbp "TAR DNA binding protein"... 160 1.5e-10 1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 148 2.1e-10 2
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 146 2.1e-10 2
UNIPROTKB|I3LNA4 - symbol:LOC100621383 "Uncharacterized p... 159 2.5e-10 1
UNIPROTKB|F1NBY1 - symbol:TARDBP "TAR DNA-binding protein... 159 2.5e-10 1
UNIPROTKB|Q5ZLN5 - symbol:TARDBP "TAR DNA-binding protein... 159 2.5e-10 1
UNIPROTKB|B4DM51 - symbol:MSI2 "RNA-binding protein Musas... 156 2.9e-10 1
WARNING: Descriptions of 565 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 724 (259.9 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 136/183 (74%), Positives = 155/183 (84%)
Query: 43 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR-IGKKIFVGRLPQEATAEDL 101
GGYGAY+AYISAATRYAALGAPTLYD+P +FYGRGE + R IG KIFVGRLPQEA+ +DL
Sbjct: 197 GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDL 256
Query: 102 RRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 161
R YF RFG I D Y+PKDPKR+GHRGFGFVTFAE VADRV+RRSHEICGQ+VAIDSATP
Sbjct: 257 RDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATP 316
Query: 162 LDDAGPSQ--NFMMNAA--ETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
LD+AGPS + M++++ E FGGYGGPMR +GRMYG + DDWGYGM + RPSR D RY
Sbjct: 317 LDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWGYGMPNARPSRPDRRY 376
Query: 218 RPY 220
RPY
Sbjct: 377 RPY 379
Score = 214 (80.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 49/79 (62%), Positives = 54/79 (68%)
Query: 20 SAVVVDRATPKEDDFRP----VGRMSH------------GGYGAYNAYISAATRYAALGA 63
+ V VDRATPKEDD P V RMS GGYGAY+AYISAATRYAALGA
Sbjct: 158 TTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGA 217
Query: 64 PTLYDHPGSFYGRGESSQR 82
PTLYD+P +FYGRGE + R
Sbjct: 218 PTLYDNPATFYGRGEPTTR 236
Score = 186 (70.5 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
+IFV R+P + D R +F R+G I D+Y+PKD HRG GF+TF+ + +
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 146 SHEICGQQVAIDSATPLDDAGPSQ-----NFMMNAAETFGGYGGP 185
+H++ G VA+D ATP +D P + GG+G P
Sbjct: 152 THDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAP 196
Score = 112 (44.5 bits), Expect = 0.00046, P = 0.00046
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVS 143
+K+ V +P + ++ L+ Y S+FG + D V KD + TG RGFG+VTFA A
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKD-RSTGRSRGFGYVTFASAEDAKNAL 61
Query: 144 RRSHEICGQQVAIDSATPLDD 164
+ H + + + + ATP ++
Sbjct: 62 KGEHFLGNRILEVKVATPKEE 82
Score = 90 (36.7 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 1 MPKDQGSKAHRGIGFITFASAVVVD 25
MPKD SK HRGIGFITF+SA V+
Sbjct: 122 MPKDYNSKQHRGIGFITFSSADSVE 146
Score = 55 (24.4 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 3 KDQGSKAHRGIGFITFASA 21
KD+ + RG G++TFASA
Sbjct: 36 KDRSTGRSRGFGYVTFASA 54
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 195 (73.7 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 50/140 (35%), Positives = 69/140 (49%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L E T E +R YF FG I + +P DPK + RGF F+TF EE ++
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG---GYGGPMRTYGRMYGSLDFDD 200
++ H +CG + I A P + Q F G G GGP +++ + Y + + +
Sbjct: 189 KKYHNVCGSKCEIKIAQP-KEIYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNN--YWN 245
Query: 201 WGYGMGSGRPSRGDWRYRPY 220
GYG G G G Y Y
Sbjct: 246 QGYG-GQGYGYGGQQGYGGY 264
Score = 140 (54.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YFS+FG ++D + D RGFGF+ F E DRV +
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 145 RSHEICGQQV 154
+ H + G+Q+
Sbjct: 106 KEHRLDGRQI 115
Score = 59 (25.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 181 GYGGPMRTYGRM--YGSLDFDDWGYGMGSG 208
GYGG + YG YG+ D+ YG GSG
Sbjct: 254 GYGG-QQGYGGYGGYGNYDYSSGYYGYGSG 282
Score = 48 (22.0 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGR 39
D + RG GFI F + VDR ++ + R GR
Sbjct: 79 DSNTGRSRGFGFILFKESDSVDRVL-QQKEHRLDGR 113
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 198 (74.8 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 51/142 (35%), Positives = 68/142 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 144 RRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 198
++ H + G + I A P + G N G GG +++ + YG+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSG-GGQSQSWNQGYGNYWN 272
Query: 199 DDWGYGMGSGRPSRGDWRYRPY 220
+GY G G P G + Y PY
Sbjct: 273 QGYGYQQGYG-PGYGGYDYSPY 293
Score = 129 (50.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 62 (26.9 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 166 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 217
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 258 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 311
Score = 46 (21.3 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A V++ +++ R GR+
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRV 139
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 163 (62.4 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
KIFVG L +E T+ + ++F ++G I D + KD ++TG RGFGFVT+A+ V D+V +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD-RKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 145 RSHEICGQQVAIDSATP 161
+H I G+QV I P
Sbjct: 102 DNHIIIGKQVEIKRTIP 118
Score = 154 (59.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG +P ++ + +F +FG + + + +D RGFGFVT+ E + D +
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 145 RSH--EICGQQVAIDSATPLDDAG---PSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFD 199
+ + E+ G QV I A P PS+ F + + GGYG YG +G
Sbjct: 190 KGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDG---YGGGHGG---- 242
Query: 200 DWGYGMGSGRPSRGDWRY 217
GYG G G P + Y
Sbjct: 243 --GYG-GPGGPYKSGGGY 257
Score = 88 (36.0 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWR 216
GP + + E GGYGGP +YG YGS GYG G G G +R
Sbjct: 322 GPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIG--GYGGGMGGAGGGGYR 370
Score = 60 (26.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGR 39
KD+ + RG GF+T+A + VVD+ +D+ +G+
Sbjct: 75 KDRKTGQPRGFGFVTYADSSVVDKVI--QDNHIIIGK 109
Score = 57 (25.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGD 214
GGYGG YG +G + GYG G G P RG+
Sbjct: 263 GGYGG----YGGEFGG--YGGGGYGGGVG-PYRGE 290
Score = 53 (23.7 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 180 GGYGG-PMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG P YG YG GYG SG
Sbjct: 317 GGYGGGPGDMYGGSYGE---PGGGYGGPSG 343
Score = 48 (22.0 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GGYGG + Y R +L + YG G G +RG +
Sbjct: 278 GGYGGGVGPY-RGEPALGYSG-RYGGGGGGYNRGGY 311
Score = 44 (20.5 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
GGYG G G F G G G G G RY PY
Sbjct: 386 GGYGAG----GGGNGGGSFYGGGGGRG-GYGGGGSGRYHPY 421
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 43 GGYGA--YNAYISAATRYAALGAPTLYDHPGSFYGRG 77
GGYG Y + ALG Y G Y RG
Sbjct: 273 GGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRG 309
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 196 (74.1 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 51/142 (35%), Positives = 69/142 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 144 RRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 198
++ H + G + I A P + G N G GG +++ + YG+
Sbjct: 218 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSG-GGQSQSWNQGYGNYWN 276
Query: 199 DDWGYGMGSGRPSRGDWRYRPY 220
+GY G G P G + Y PY
Sbjct: 277 QGYGYQQGYG-PGYGGYDYSPY 297
Score = 128 (50.1 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 135 KEHRLDGRVI 144
Score = 62 (26.9 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 166 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 217
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 262 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 315
Score = 41 (19.5 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F + V++ +++ R GR+
Sbjct: 108 DPNTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRV 143
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 196 (74.1 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 51/142 (35%), Positives = 69/142 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 144 RRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 198
++ H + G + I A P + G N G GG +++ + YG+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSG-GGQSQSWNQGYGNYWN 277
Query: 199 DDWGYGMGSGRPSRGDWRYRPY 220
+GY G G P G + Y PY
Sbjct: 278 QGYGYQQGYG-PGYGGYDYSPY 298
Score = 128 (50.1 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
Score = 62 (26.9 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 166 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 217
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 263 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 316
Score = 41 (19.5 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F + V++ +++ R GR+
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRV 144
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 190 (71.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 51/147 (34%), Positives = 72/147 (48%)
Query: 85 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV- 142
KKIFVG L P+ T E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 143 SRRSHEICGQQVAIDSATPLD--------DAGP-SQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H + G + I A P + G ++N + GG GG +++ + Y
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY 272
Query: 194 GSLDFDDWGYGMGSGRPSRGDWRYRPY 220
G+ +GY G G P G + Y PY
Sbjct: 273 GNYWNQGYGYQQGYG-PGYGGYDYSPY 298
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 130 KEHRLDGRVI 139
Score = 62 (26.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 166 GPSQNFMMNAAETFG-GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 217
G SQ++ + GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 263 GQSQSWNQGYGNYWNQGYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 316
Score = 46 (21.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A V++ +++ R GR+
Sbjct: 103 DPNTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRV 138
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 188 (71.2 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 48/124 (38%), Positives = 60/124 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + G + I A P + Q F G YGG R GR G +W
Sbjct: 144 KKFHNVSGSKCEIKVAQP-KEVYQQQQFSSGGGR--GSYGGRGRG-GR--GGAQSQNWNQ 197
Query: 204 GMGS 207
G G+
Sbjct: 198 GYGN 201
Score = 127 (49.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG + D + DP RGFGF+ F E ++V +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 61 KEHRLDGRLI 70
Score = 55 (24.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 168 SQNFMMNAAETFG-GYG----GPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 217
SQN+ + GYG G + YG YG D+ +GY G G G S+G Y
Sbjct: 192 SQNWNQGYGNYWNQGYGNQGYGYQQGYGG-YGGYDYSGYGYYGYGPGYDYSQGSANY 247
Score = 40 (19.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F V++ ++ + R GR+
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVL-EQKEHRLDGRL 69
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 179 (68.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 50/148 (33%), Positives = 69/148 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 144 RRSHEICG-QQVAIDSATPLDDAGPSQNFMMNAAETF----------GGYGGPMRTYGRM 192
++ H I G ++ + PL ++ E GG G +++ +
Sbjct: 144 KKFHTISGSKRCGLGVGLPLQLMTQRWFLSVSRCERDKKGNRGSGGGGGSGSQSQSWNQG 203
Query: 193 YGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
YG+ +GY G G P G + Y PY
Sbjct: 204 YGNYWNQGYGYQQGYG-PGYGGYDYSPY 230
Score = 129 (50.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 61 KEHRLDGRVI 70
Score = 60 (26.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGY-GMGSGRP-SRGDWRY 217
GYG + YG YG D+ +GY G G G S+G Y
Sbjct: 211 GYGY-QQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNY 248
Score = 46 (21.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A V++ +++ R GR+
Sbjct: 34 DPNTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRV 69
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 171 (65.3 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 36/92 (39%), Positives = 53/92 (57%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-AEE 136
+S KKIFVG +P +LR YF+RFG + +V + D ++ RGFGF+TF AE+
Sbjct: 106 KSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQ 165
Query: 137 VVADRVSRRSHEICGQQVAIDSATPLDDAGPS 168
V V+ H+I G++V + A P D P+
Sbjct: 166 SVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPA 197
Score = 134 (52.2 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EV 137
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F +
Sbjct: 6 AGDEIGK-LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNC 64
Query: 138 VADRVSRRSHEICGQQVAIDSATP 161
V + + H + G+ + TP
Sbjct: 65 VRTVLDTKPHNLDGRNIDPKPCTP 88
Score = 45 (20.9 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 151 GQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGS 207
G + P P F++ A T GG+G P + Y + G +GY G+
Sbjct: 247 GPPLPAGRGAPAQAPSPFNAFLVAAPPT-GGFGAP-QGYPQQ-GFSTQPQFGYSFGT 300
Score = 42 (19.8 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 44 KDKSTNQSRGFGFVKF 59
Score = 39 (18.8 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 158 SATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
+ TP D + + + + GYG + +G + Y PS G
Sbjct: 328 ATTPSQDLSKAAPAQPDFSYSQYGYGQDLSAFGHSFADPSQPTASYAAAPSAPSSG 383
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 176 (67.0 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 41/105 (39%), Positives = 55/105 (52%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KK+F+G L +T ED+++YF +G++ D + D HRGFGFVTF + VAD+V
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRT 188
HEI G+ V A P + P Q AA YG P T
Sbjct: 194 IHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYGMPPET 238
Score = 158 (60.7 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVA 139
SQ GK +F+G L + TAE+LR YF RFG + + V +DP RGFGF+TF +
Sbjct: 41 SQDPGK-MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSV 99
Query: 140 DRV-SRRSHEICGQQVAIDSATP 161
D+V + R HE+ G+++ A P
Sbjct: 100 DKVLNNREHELDGKKIDPKVAFP 122
Score = 55 (24.4 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GFITF VD+
Sbjct: 78 RDPATKRARGFGFITFVDPSSVDK 101
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 181 (68.8 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 53/139 (38%), Positives = 65/139 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + G + I A P + Q F G YGG R GR G Y
Sbjct: 144 KKFHNVSGSKCEIKVAQP-KEVYQQQQFSSGGGR--GSYGGRGRG-GRGGGQ---GSANY 196
Query: 204 GMGSGRPSRGDWR--YRPY 220
G P RG + Y+PY
Sbjct: 197 GK---TPRRGGHQNNYKPY 212
Score = 127 (49.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG + D + DP RGFGF+ F E ++V +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 61 KEHRLDGRLI 70
Score = 40 (19.1 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F V++ ++ + R GR+
Sbjct: 34 DPNTGRSRGFGFILFKEPGSVEKVL-EQKEHRLDGRL 69
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 158 (60.7 bits), Expect = 5.7e-16, Sum P(3) = 5.7e-16
Identities = 42/127 (33%), Positives = 71/127 (55%)
Query: 77 GESSQRIG-KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-A 134
G S+ I KKIFVG +P T ++L+ +F+++G +++ V +D + RGFGFV F +
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Query: 135 EEVVADRVSRRSH-EICGQQVAIDSATP---LDDAGPSQNFM---MNAAETFGGYGGPMR 187
EEVV + +S+ + ++ QV I A P L+ + PS ++ +++ YGGP
Sbjct: 160 EEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Query: 188 TYGRMYG 194
+ YG
Sbjct: 220 GFDGGYG 226
Score = 153 (58.9 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 36/97 (37%), Positives = 55/97 (56%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
KIF+G L ++ T ++F ++G I D + +D + TG RGFGF+TFA+ V D+V
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD-RHTGQPRGFGFITFADPSVVDKVIE 78
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 181
+H I G+QV I P AG +Q+ + + F G
Sbjct: 79 DTHVINGKQVEIKRTIP-KGAGGNQSKDIKTKKIFVG 114
Score = 58 (25.5 bits), Expect = 5.7e-16, Sum P(3) = 5.7e-16
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D+ + RG GFITFA VVD+
Sbjct: 52 RDRHTGQPRGFGFITFADPSVVDK 75
Score = 57 (25.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 180 GGYG---GPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
GGYG GP+R++G S +GYG GS P G
Sbjct: 223 GGYGHPPGPIRSHGGP-ASRYAGGYGYGRGSVGPEFG 258
Score = 42 (19.8 bits), Expect = 5.7e-16, Sum P(3) = 5.7e-16
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
GY YG +G + G G G P G Y Y
Sbjct: 279 GYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGY 318
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 168 (64.2 bits), Expect = 6.3e-16, Sum P(3) = 6.3e-16
Identities = 46/140 (32%), Positives = 73/140 (52%)
Query: 45 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 103
+G+Y+A + T R+ G P S +G Q + K+FVGR ++ ++DLR
Sbjct: 155 FGSYDAQMRVLTNRHLIDGRWCEVKVPNS---KGMGHQ-VPCKVFVGRCTEDINSDDLRE 210
Query: 104 YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 163
YFS+FG + DV++P+ P R F FVTF + VA + H I G V + +A P
Sbjct: 211 YFSKFGEVTDVFIPR-P----FRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKA 265
Query: 164 DAGPSQ---NFMMNAAETFG 180
+ +Q ++ N+A +FG
Sbjct: 266 EQNRNQQVQSYNYNSANSFG 285
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 36/123 (29%), Positives = 54/123 (43%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R E+ R I +G LP + T E LR YF +G +L + KD K +GFGFV F
Sbjct: 99 RIETRLRCTDLIVLG-LPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGS 157
Query: 136 EVVADRVSRRSHEICGQ--QVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
RV H I G+ +V + ++ + P + F+ E +R Y +
Sbjct: 158 YDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINS--DDLREYFSKF 215
Query: 194 GSL 196
G +
Sbjct: 216 GEV 218
Score = 40 (19.1 bits), Expect = 6.3e-16, Sum P(3) = 6.3e-16
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 3 KDQGSKAHRGIGFITFAS 20
KD S +G GF+ F S
Sbjct: 140 KDTKSGQSKGFGFVRFGS 157
Score = 39 (18.8 bits), Expect = 6.3e-16, Sum P(3) = 6.3e-16
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 168 SQNFMMNAAETFGGYGGP 185
+QN N A FGG GP
Sbjct: 471 AQNGGHNNANNFGGRKGP 488
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 161 (61.7 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 47/137 (34%), Positives = 68/137 (49%)
Query: 70 PGSFYGRGE-SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF 128
P + +G S KIFVG +P +LR YF +FG + +V + D ++ RGF
Sbjct: 87 PKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF 146
Query: 129 GFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDA----GP---SQ---NFMMNAAE 177
GF+TF +E D+ V+ H+I G++V + A P D GP SQ M +AA
Sbjct: 147 GFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWGSRIMPSAAN 206
Query: 178 TFGGYGGPMRTYGRMYG 194
G G P T+ + YG
Sbjct: 207 --GWAGQPPPTWQQGYG 221
Score = 134 (52.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 145 RSHEICGQQVAIDSATP 161
R H + G+ + TP
Sbjct: 61 RPHTLDGRNIDPKPCTP 77
Score = 43 (20.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 166 GPSQNFMMNAAETFGGYGGP 185
GP Q + A + GGYG P
Sbjct: 221 GP-QGMWVPAGQAIGGYGPP 239
Score = 40 (19.1 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 33 KDKTTNQSRGFGFVKF 48
Score = 38 (18.4 bits), Expect = 9.1e-16, Sum P(3) = 9.1e-16
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
GYG + +G+ + YG S +PS G
Sbjct: 342 GYGQDLSGFGQGFSDPSQQPPPYGGPSVQPSSG 374
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 168 (64.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 49/134 (36%), Positives = 63/134 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED++ YF +FG I D + D + HRGFGFVTF E V D+V
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM---YGSLDFDD 200
HEI + V A P + P+ N A Y M G + + + +
Sbjct: 178 IHFHEINNKMVECKKAQPKEVMLPA-NLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAYAA 236
Query: 201 WGYGMG-SGRPSRG 213
+ G G SG PS G
Sbjct: 237 YAAGRGYSGYPSFG 250
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 40/119 (33%), Positives = 63/119 (52%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + + E LR YF R+G I + V KDP RGFGFVTF++ D+V ++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 197
+HE+ G++V A P A P + + F GG P +++Y +G ++
Sbjct: 90 GTHELDGKKVDPKVAFPRR-AHPKM--VTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIE 145
Score = 53 (23.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
KD ++ RG GF+TF+ VD+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDK 85
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 176 (67.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 143
G K+F+G LP T DLR +F+R+G++ +V + D ++ RGFGF++F EE + V+
Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154
Query: 144 RRSH-EICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 202
+ + G+QV I A P D +G + +G G +G + ++
Sbjct: 155 NERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQ 214
Query: 203 YGMGSGRP 210
G G P
Sbjct: 215 NGQMGGPP 222
Score = 139 (54.0 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+FVG L E T E+L RYF RFG I+D V K+ + RGFGFVTFA+ + V +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 146 S-HEICGQQV 154
H + G+ +
Sbjct: 68 GPHTLDGRTI 77
Score = 46 (21.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD 25
K+ S RG GF+TFA V+
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVN 62
Score = 39 (18.8 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 158 SATPLDDAGPSQNFMMNAAETFGGYGGPMRT----YGRMYGSLDFDDWGYGMG 206
+ T D +Q + T G GG RT GS ++D GYG G
Sbjct: 329 AGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGS-EYDYGGYGSG 380
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 179 (68.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 57/181 (31%), Positives = 80/181 (44%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 62
+D+ + RG GFI FA V +R D GR R+A+
Sbjct: 48 RDRTTGRARGFGFIVFADPSVAERVIM--DKHIIDGRTVEAKKAVPRDDQQVLKRHAS-- 103
Query: 63 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR 122
P P S G G ++ KKIFVG LP T + + YF +FG I DV V D
Sbjct: 104 -PMHLISP-SHGGNGGGART--KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNT 159
Query: 123 TGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATP--LDDAGPSQNFMMNAAETF 179
RGFGF+TF E D V ++ HE+ G+ V + A P L P+++ ++ +
Sbjct: 160 QRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNY 219
Query: 180 G 180
G
Sbjct: 220 G 220
Score = 162 (62.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEE 136
ES+ +GK +F+G + + E L+ YF ++G +++ + +D + TG RGFGF+ FA+
Sbjct: 9 ESASDLGK-LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD-RTTGRARGFGFIVFADP 66
Query: 137 VVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNF---MMNAAETFGGYGGPMRTYGRMY 193
VA+RV H I G+ V A P DD + M + + GG GG RT
Sbjct: 67 SVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFV 126
Query: 194 GSL 196
G L
Sbjct: 127 GGL 129
Score = 43 (20.2 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 163 DDAGPSQNFMMNAAETFGGYG-----GPMRTYGRMYGS 195
D +GP N ++ G +G YGR YG+
Sbjct: 327 DSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGA 364
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 166 (63.5 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 46/139 (33%), Positives = 65/139 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EA + +R YF FG I + +P DPK RGF F+TF EE ++
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM-RTYGRMYGSLDFDDWG 202
++ H + G + I A P + Q +FGG GG + G+ + ++ W
Sbjct: 208 KKFHNVSGSKCEIKIAQPKE---VYQQQYGGRGGSFGGRGGRGGKGQGQNWNQ-GYNYWN 263
Query: 203 YGMGS-GRPSRGDWRYRPY 220
G G+ G G Y Y
Sbjct: 264 QGYGNQGYGGYGQQGYGGY 282
Score = 133 (51.9 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV- 142
G K+FVG L + + +DL+ YF++FG + D + DP RGFGF+ F + D+V
Sbjct: 63 GVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVL 122
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 197
+ H + G+ + A + P + + G +R Y +G ++
Sbjct: 123 EHKEHRLDGRLIDPKKAMAMKK-DPIKKIFVGGLNPEAGED-QIREYFETFGEIE 175
Score = 48 (22.0 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A VD+ + + R GR+
Sbjct: 98 DPNTGRSRGFGFILFKDAESVDKVL-EHKEHRLDGRL 133
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 165 (63.1 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 45/128 (35%), Positives = 62/128 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + T E LR YF +G I + +P D K RGF FVTFA EE V +
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY---GGPMRTYGRMYGSLDFDD 200
R H+I + I A P + QN GG+ GG + + + Y + +
Sbjct: 175 NRYHQIGSGKCEIKVAQPKEVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNYYGQN 234
Query: 201 WGYGMGSG 208
+G G G+G
Sbjct: 235 YGGGYGNG 242
Score = 130 (50.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 36/128 (28%), Positives = 59/128 (46%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ + GK +F+G L + + +DL Y SRFG +LD + DP RGFGF
Sbjct: 17 GSKINASKNQEDDGK-MFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGF 75
Query: 131 VTFAEEVVADRVSRRS-HEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTY 189
V F + DRV + H++ G+ + A + P + + +R Y
Sbjct: 76 VLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSP-DITEEQLREY 134
Query: 190 GRMYGSLD 197
+YG ++
Sbjct: 135 FGVYGEIE 142
Score = 45 (20.9 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VDR
Sbjct: 71 RGFGFVLFKDAESVDR 86
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 163 (62.4 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 36/78 (46%), Positives = 44/78 (56%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 144 RRSHEICGQQVAIDSATP 161
++ H I G + I A P
Sbjct: 214 KKFHTISGSKCEIKVAQP 231
Score = 129 (50.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 46 (21.3 bits), Expect = 4.9e-15, Sum P(2) = 4.9e-15
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A V++ +++ R GR+
Sbjct: 104 DPNTGRSRGFGFILFKDATSVEKVLDQKEH-RLDGRV 139
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 163 (62.4 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 48/144 (33%), Positives = 69/144 (47%)
Query: 66 LYDHPGSFYGRGESSQRI----GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK 121
L P + GR + R KIFVG +P +LR YF +FG + +V + D +
Sbjct: 68 LASRPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE 127
Query: 122 RTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---N 170
+ RGFGF+TF +E D+ V+ H+I G++V + A P D G SQ
Sbjct: 128 KQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSR 187
Query: 171 FMMNAAETFGGYGGPMRTYGRMYG 194
+ NAA G G P T+ + YG
Sbjct: 188 VVPNAAN--GWAGQPPPTWQQGYG 209
Score = 128 (50.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQ 152
++ R H + G+
Sbjct: 65 GTVLASRPHTLDGR 78
Score = 40 (19.1 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 172 (65.6 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 47/139 (33%), Positives = 72/139 (51%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-AEEVVADRVSR 144
KIFVG L E + E+++ YF +FG I++V +P D +++ +GF F+TF +E+VV D +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 145 RSHEICGQQVAIDSATPLDD--------AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSL 196
+I G++V + ATP + GP + M +GG GG + GS
Sbjct: 197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGP-RGGMRGGRGGYGGRGGYNNQWDGQ-GSY 254
Query: 197 DFDDWGYGMGSGRPSRGDW 215
GYG G G GD+
Sbjct: 255 GGYGGGYG-GYGAGGYGDY 272
Score = 121 (47.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 79 SSQRIG-KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 137
S QR +K+FVG L E T ++LR +F ++G I + V DP+ RGF F+ F
Sbjct: 49 SGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108
Query: 138 VADRVSRRSHEI 149
D+VS I
Sbjct: 109 AIDKVSAADEHI 120
Score = 57 (25.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 179 FGGYG-GPMRTY--GRMYGSLDFDDWGYGMGSGRPSRG 213
+GGYG G Y G Y D+ GYG G G G
Sbjct: 261 YGGYGAGGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNG 298
Score = 40 (19.1 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG FI F + +D+ + ++
Sbjct: 97 RGFAFIVFTNTEAIDKVSAADE 118
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
GYGG G YG + G G G R G
Sbjct: 289 GYGGGFE--GNGYGGGGGGNMGGGRGGPRGGGG 319
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 161 (61.7 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 35/78 (44%), Positives = 44/78 (56%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 144 RRSHEICGQQVAIDSATP 161
++ H + G + I A P
Sbjct: 214 KKFHTVSGSKCEIKVAQP 231
Score = 129 (50.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 46 (21.3 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A V++ +++ R GR+
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRV 139
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 161 (61.7 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 35/78 (44%), Positives = 44/78 (56%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 144 RRSHEICGQQVAIDSATP 161
++ H + G + I A P
Sbjct: 214 KKFHTVSGSKCEIKVAQP 231
Score = 129 (50.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 131 KEHRLDGRVI 140
Score = 46 (21.3 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F A V++ +++ R GR+
Sbjct: 104 DPNTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRV 139
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 157 (60.3 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 39/111 (35%), Positives = 56/111 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L E T E +R YF FG I + +P DPK RGF F+TF EE ++
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 144 RRSHEICGQQVAI--DSATPLDDAGPSQNFMMNAAETFGG-YGGPMRTYGR 191
++ H + G + + + A P + + + +GG +GG R GR
Sbjct: 239 KKYHNVSGTKDTSGKEGLCEIKIAQPKEVYQQ---QQYGGRFGGGGRGRGR 286
Score = 147 (56.8 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 40/127 (31%), Positives = 63/127 (49%)
Query: 31 EDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS--QRIGKKIF 88
EDD G+ G N A + A GA G+ G+ ++S + K+F
Sbjct: 45 EDDLNGAGQYDQG-----NGDAQAGAQGNA-GADGTAGDDGADGGQIDASKGEEDAGKMF 98
Query: 89 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRRSH 147
VG L + + +DL+ YFS+FG + D + DP RGFGF+ F E D+V +++ H
Sbjct: 99 VGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEH 158
Query: 148 EICGQQV 154
+ G+Q+
Sbjct: 159 RLDGRQI 165
Score = 53 (23.7 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 179 FGGYGGPMR-TY-GRMYGSLDFDDWGYGMGS-GR-PSRGDWR--YRPY 220
+GGYGG Y G YG D+ G S G+ P RG + Y+PY
Sbjct: 319 YGGYGGYGNYDYSGGYYGGYGGYDYNQGNTSYGKTPRRGAHQSSYKPY 366
Score = 53 (23.7 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 179 FGGYGGPMRTYGRM--YGSLDFDDWGYGMGSG 208
+GGYGG + YG YG+ D+ YG G G
Sbjct: 310 YGGYGG-QQGYGGYGGYGNYDYSGGYYG-GYG 339
Score = 41 (19.5 bits), Expect = 9.5e-15, Sum P(3) = 9.5e-15
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKED 32
D + RG GFI F VD+ +++
Sbjct: 129 DPNTGRSRGFGFILFKEPSGVDKVLAQKE 157
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 163 (62.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 36/78 (46%), Positives = 44/78 (56%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 144 RRSHEICGQQVAIDSATP 161
++ H I G + I A P
Sbjct: 208 KKFHTISGSKCEIKVAQP 225
Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/129 (27%), Positives = 59/129 (45%)
Query: 27 ATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKK 86
AT + P G S G G A A AA A G ++ + GK
Sbjct: 9 ATENGHEAAPEGE-SPAGAGT-GAAAGAGGGSAAPPAGNQNGAEGDQINASKNEEDAGK- 65
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRR 145
+FVG L + + +DL+ YF++FG ++D + P +GFGF+ F + ++V ++
Sbjct: 66 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQK 125
Query: 146 SHEICGQQV 154
H + G+ +
Sbjct: 126 EHRLDGRVI 134
Score = 41 (19.5 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 11 RGIGFITFASAVVVDRATPKEDDFRPVGRM 40
+G GFI F A V++ +++ R GR+
Sbjct: 105 KGFGFILFKDAASVEKVLDQKEH-RLDGRV 133
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 191 (72.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 66/221 (29%), Positives = 96/221 (43%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKED--DFRPVGRMSHGGYGAYNAYISAATRYAA 60
+D+ + RG GF+ F+ V+DR ++ D R V +S T
Sbjct: 39 RDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKR--AMSREEQQVSGRTG--- 93
Query: 61 LGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP 120
T G Y + KKIFVG LP T E+ R+YF +G + DV + D
Sbjct: 94 -NLNTSRSSGGDAYNKT-------KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQ 145
Query: 121 KRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLD--DAGPSQNFMMNAAE 177
RGFGFV+F E D V ++ H++ G+QV + A P D G ++ +
Sbjct: 146 ATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSG 205
Query: 178 TFGGYGGPMRTY-GRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
+ GYGG +Y GRM + +G+G PS G Y
Sbjct: 206 GYQGYGGNESSYDGRMDSNRFLQH--QSVGNGLPSYGSSGY 244
Score = 183 (69.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 51/145 (35%), Positives = 69/145 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG LP T E+ R+YF +G + DV + D RGFGFV+F E D V
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 145 RS-HEICGQQVAIDSATPLD--DAGPSQNFMMNAAETFGGYGGPMRTY-GRM-------- 192
++ H++ G+QV + A P D G ++ + + GYGG +Y GRM
Sbjct: 170 KTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQH 229
Query: 193 ----YGSLDFDDWGYGMGSGRPSRG 213
G + GYG G G S G
Sbjct: 230 QSVGNGLPSYGSSGYGAGYGNGSNG 254
Score = 135 (52.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
K+FVG + E + LR +F+ +G + V +D K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD-KLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 145 RSHEICGQQVAIDSATPLDDAGPS-QNFMMNAAETFGG 181
H I ++V + A ++ S + +N + + GG
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGG 103
Score = 59 (25.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 179 FGGYGGPMRTYGRM----YGSLDFDDWGYGMGSGRPSRGDW 215
+GGY G YG YG+ + GYG +G R W
Sbjct: 260 YGGYTGSAGGYGAGATAGYGATNIPGAGYGSSTGVAPRNSW 300
Score = 47 (21.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 174 NAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
N +GGY G YG YG+ GRPS G
Sbjct: 339 NQGYGYGGYSGSDSGYGNQAA--------YGVVGGRPSGG 370
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 154 (59.3 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 145 -RSHEICGQQVAIDSATP 161
HEI + V A P
Sbjct: 170 IHFHEINNKMVECKKAQP 187
Score = 145 (56.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 134
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 135 EEVVADRV-SRRSHEICGQQVAIDSATP 161
+ D+V ++ HE+ + + A P
Sbjct: 71 DAASVDKVLAQPHHELDSKTIDPKVAFP 98
Score = 64 (27.6 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TFA A VD+
Sbjct: 54 RDPTTKRSRGFGFVTFADAASVDK 77
Score = 37 (18.1 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 206 GSGRPSRGDWRYRPY 220
GSGR +RG Y Y
Sbjct: 263 GSGRGARGRGGYAAY 277
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 165 (63.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG + Q+ +AE+++ YFS+FG + + + D + HRGFGFVTF E V DRV
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTY-GRMYGS 195
H I ++V A P + P+ + G G + T G++ G+
Sbjct: 351 IHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRI-MLGTLGVQLPTAPGQLIGA 402
Score = 149 (57.5 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 77 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE 136
G S K+FVG L + +++ L+ YF+ FG + DV + KDP RGFGF+TF E
Sbjct: 195 GSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEP 254
Query: 137 VVADRVSRRS-HEICGQQVAIDSATP 161
++V + H + G+++ ATP
Sbjct: 255 CTVEKVLKVPIHTLDGKKIDPKHATP 280
Score = 50 (22.7 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
KD ++ RG GFITF V++
Sbjct: 236 KDPVTQRSRGFGFITFQEPCTVEK 259
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 159 (61.0 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
KIFVG + QEAT +D +++F +FGR++D + D K TG RGFGFVTF E +
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMID-KDTGRPRGFGFVTFDSEAAVEAALS 253
Query: 145 RSHEICGQQVAIDSATP 161
R EI G+ + + A P
Sbjct: 254 RPLEILGKTIEVKKAQP 270
Score = 129 (50.5 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L E T + L+ YFS+FG + + V +D RGFGF+TF + + V +
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 146 SHEICGQQVAIDSATPLDD 164
H + G+ + A P D+
Sbjct: 171 EHYLDGKIIDPKRAIPRDE 189
Score = 48 (22.0 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKE 31
+D + RG GF+TF V+ KE
Sbjct: 143 RDSATGRSRGFGFLTFKDPKTVNTVMVKE 171
Score = 39 (18.8 bits), Expect = 6.3e-14, Sum P(3) = 6.3e-14
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 168 SQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
S N M + GG GGP Y + + F+ Y R + + + PY
Sbjct: 430 SGNMNMGSNYAGGGRGGP--GYNA-HEQIAFEQQKYEQQQARRAMENRAFSPY 479
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 160 (61.4 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 134 (52.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + T E L+ YF +FG + + V +DP RGFGFVTF ++ D+V ++
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 145 RSHEICGQQVAIDSATP 161
HE+ + + A P
Sbjct: 81 TRHELDSKTIDPKVAFP 97
Score = 53 (23.7 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 53 RDPVTKRSRGFGFVTFVDQAGVDK 76
>GENEDB_PFALCIPARUM|PF11_0083 [details] [associations]
symbol:PF11_0083 "nucleic acid binding factor,
putative" species:5833 "Plasmodium falciparum" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014186 RefSeq:XP_001347758.2 ProteinModelPortal:Q8IIT2
EnsemblProtists:PF11_0083:mRNA GeneID:810634 KEGG:pfa:PF11_0083
EuPathDB:PlasmoDB:PF3D7_1107100 HOGENOM:HOG000282219
ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 189 (71.6 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 37/95 (38%), Positives = 63/95 (66%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
+IF RLP EA+ +DL +YFS+FG+I+D+YV ++ ++GFGFV+F ++ ++V +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSRNISNNKNKGFGFVSFEKQESMNKVLKE 286
Query: 146 S-HEICGQQVAIDSATPLDDAG------PSQNFMM 173
H ICG+++ +D A+ DD PS+N++M
Sbjct: 287 KLHIICGKEIVVDVASMRDDKYKHLFHMPSENYLM 321
Score = 153 (58.9 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 77 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE- 135
G+ + G K+FV +L T E LR YF +FG I+D+Y+P D RG FVTF +
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMPNDVYTNRPRGIAFVTFLDN 553
Query: 136 EVVADRVS--RRSHEICGQQVAIDSATP 161
E V + +S H I G++V +D A P
Sbjct: 554 ESVKNILSDEHSKHIIDGKEVVLDLADP 581
>UNIPROTKB|Q8IIT2 [details] [associations]
symbol:PF11_0083 "Nucleic acid binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014186 RefSeq:XP_001347758.2
ProteinModelPortal:Q8IIT2 EnsemblProtists:PF11_0083:mRNA
GeneID:810634 KEGG:pfa:PF11_0083 EuPathDB:PlasmoDB:PF3D7_1107100
HOGENOM:HOG000282219 ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 189 (71.6 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 37/95 (38%), Positives = 63/95 (66%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
+IF RLP EA+ +DL +YFS+FG+I+D+YV ++ ++GFGFV+F ++ ++V +
Sbjct: 227 RIFATRLPFEASKKDLEKYFSKFGKIVDIYVSRNISNNKNKGFGFVSFEKQESMNKVLKE 286
Query: 146 S-HEICGQQVAIDSATPLDDAG------PSQNFMM 173
H ICG+++ +D A+ DD PS+N++M
Sbjct: 287 KLHIICGKEIVVDVASMRDDKYKHLFHMPSENYLM 321
Score = 153 (58.9 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 77 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE- 135
G+ + G K+FV +L T E LR YF +FG I+D+Y+P D RG FVTF +
Sbjct: 494 GDEWNKRGYKLFVTKLNSATTIEKLRNYFEKFGEIIDIYMPNDVYTNRPRGIAFVTFLDN 553
Query: 136 EVVADRVS--RRSHEICGQQVAIDSATP 161
E V + +S H I G++V +D A P
Sbjct: 554 ESVKNILSDEHSKHIIDGKEVVLDLADP 581
>FB|FBgn0036496 [details] [associations]
symbol:CG7804 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
Length = 318
Score = 162 (62.1 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 45/131 (34%), Positives = 67/131 (51%)
Query: 45 YGAYNAYISAAT-RYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRR 103
+G+Y+ + + R++ G P S RG +Q GK +FVGR ++ A+DLR
Sbjct: 155 FGSYDVQMHVLSKRHSIDGRWCEVKVPAS---RGMGNQEPGK-VFVGRCTEDIEADDLRE 210
Query: 104 YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 163
YFS+FG ++DV++PK P R F FVTF + V V H I G V + +A +
Sbjct: 211 YFSKFGEVIDVFIPK-P----FRAFSFVTFLDPYVPRVVCGEKHIIKGVSVHVSTADKKN 265
Query: 164 DAGPSQNFMMN 174
+Q F N
Sbjct: 266 VQNKNQLFQTN 276
Score = 120 (47.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 36/124 (29%), Positives = 58/124 (46%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFA 134
R E+ R I +G L T +DLR YF +G ++ + KD R+GH +GFGFV F
Sbjct: 99 RTEAHLRCFDLIVLG-LSYNTTEQDLREYFETYGDVVKAEIKKDT-RSGHSKGFGFVRFG 156
Query: 135 EEVVADRVSRRSHEICGQ--QVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM 192
V V + H I G+ +V + ++ + + P + F+ E +R Y
Sbjct: 157 SYDVQMHVLSKRHSIDGRWCEVKVPASRGMGNQEPGKVFVGRCTEDIEA--DDLREYFSK 214
Query: 193 YGSL 196
+G +
Sbjct: 215 FGEV 218
Score = 39 (18.8 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 3 KDQGSKAHRGIGFITFAS 20
KD S +G GF+ F S
Sbjct: 140 KDTRSGHSKGFGFVRFGS 157
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 160 (61.4 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 76 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 136 IHFHEINNKMVECKKAQPKEVMSPT 160
Score = 109 (43.4 bits), Expect = 0.00083, P = 0.00082
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 99 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAID 157
E LR YF +FG + V +DP RGFGFVTF ++ D+V +S HE+ + +
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 158 SATP 161
A P
Sbjct: 61 VAFP 64
Score = 51 (23.0 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 20 RDPLTKRSRGFGFVTFMDQAGVDK 43
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 160 (61.4 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 149 IHFHEINNKMVECKKAQPKEVMSPT 173
Score = 141 (54.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 146 S-HEICGQQVAIDSATP 161
S HE+ + + A P
Sbjct: 61 SRHELDSKTIDPKVAFP 77
Score = 51 (23.0 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 33 RDPLTKRSRGFGFVTFMDQAGVDK 56
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 164 (62.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 50/151 (33%), Positives = 72/151 (47%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R +SS+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 105 RSDSSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 162
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQNFMMNAAETFGGYGG-PM 186
E D+ V+ H+I G++V + A P D G SQ A G+ G P
Sbjct: 163 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 222
Query: 187 RTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
T+ + YG W G +G G P G
Sbjct: 223 PTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 251
Score = 136 (52.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 164 (62.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 50/151 (33%), Positives = 72/151 (47%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R +SS+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 106 RSDSSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQNFMMNAAETFGGYGG-PM 186
E D+ V+ H+I G++V + A P D G SQ A G+ G P
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 223
Query: 187 RTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
T+ + YG W G +G G P G
Sbjct: 224 PTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 136 (52.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 164 (62.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 50/151 (33%), Positives = 72/151 (47%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R +SS+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 106 RSDSSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQNFMMNAAETFGGYGG-PM 186
E D+ V+ H+I G++V + A P D G SQ A G+ G P
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 223
Query: 187 RTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
T+ + YG W G +G G P G
Sbjct: 224 PTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 136 (52.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 160 (61.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 141 (54.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 146 S-HEICGQQVAIDSATP 161
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 51 (23.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDK 76
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 184 (69.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 65/205 (31%), Positives = 88/205 (42%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 62
+D+ + RG GFI FA V +R D GR R+A+
Sbjct: 39 RDRATGRARGFGFIVFADPCVSERVIM--DKHIIDGRTVEAKKAVPRDDQQVLKRHAS-- 94
Query: 63 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR 122
P P +G G + KKIFVG LP T E+ + YF +FG I DV V D
Sbjct: 95 -PIHLMSP--VHGGGGRT----KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNT 147
Query: 123 TGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 181
RGFGF+TF + DRV ++ HE+ G+ V + A P + P N A
Sbjct: 148 QRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVP-KEISPVSNIRSPLASGVN- 205
Query: 182 YGGPMRTYGRMYGSLDFDDWGYGMG 206
YGG RM + F+++ G G
Sbjct: 206 YGGGSN---RMPANSYFNNFAPGPG 227
Score = 148 (57.2 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
K+F+G + + E LR YFS +G +++ + +D + TG RGFGF+ FA+ V++RV
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD-RATGRARGFGFIVFADPCVSERVIM 65
Query: 145 RSHEICGQQVAIDSATPLDD 164
H I G+ V A P DD
Sbjct: 66 DKHIIDGRTVEAKKAVPRDD 85
Score = 40 (19.1 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRT--------YGRMYGS 195
D AGP N ++ G +G P + +GR YG+
Sbjct: 321 DTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGT 361
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 160 (61.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 45/130 (34%), Positives = 67/130 (51%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++S+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 133 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 190
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 184
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 191 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 248
Query: 185 PMRTYGRMYG 194
P T+ + YG
Sbjct: 249 PPPTWQQGYG 258
Score = 140 (54.3 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 41/134 (30%), Positives = 62/134 (46%)
Query: 62 GAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK 121
GAP+ H S R +++Q +K+FVG L T E LR YFS++G ++D + KD
Sbjct: 37 GAPS---H-SSVSAR-KAAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT 91
Query: 122 RTGHRGFGFVTFAE-EVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG 180
RGFGFV F + V ++ R H + G+ + P D S +
Sbjct: 92 TNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNC 151
Query: 181 GYGGPMRTYGRMYG 194
G +R Y + +G
Sbjct: 152 GET-ELREYFKKFG 164
Score = 40 (19.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 88 KDKTTNQSRGFGFVKF 103
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 159 (61.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 34/85 (40%), Positives = 46/85 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED++ YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 136 IHFHEINNKMVECKKAQPKEVMSPT 160
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 99 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAID 157
E LR YF +FG + + V +DP RGFGFVTF ++ D+V +S HE+ + +
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 158 SATP 161
A P
Sbjct: 61 VAFP 64
Score = 51 (23.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 20 RDPLTKRSRGFGFVTFMDQAGVDK 43
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 156 (60.0 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 46/131 (35%), Positives = 61/131 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 192
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 148 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 207
Query: 193 YGSLDFDDWGY 203
Y +GY
Sbjct: 208 YPGFA-PSYGY 217
Score = 134 (52.2 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRR 145
+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA+ D+V +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 146 SHEICGQQVAIDSATP 161
HE+ + + A P
Sbjct: 61 HHELDSKTIDPKVAFP 76
Score = 59 (25.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TFA VD+
Sbjct: 32 RDPTTKRSRGFGFVTFADPASVDK 55
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 156 (60.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 46/131 (35%), Positives = 61/131 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 192
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 229
Query: 193 YGSLDFDDWGY 203
Y +GY
Sbjct: 230 YPGFA-PSYGY 239
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 134
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 135 EEVVADRV-SRRSHEICGQQVAIDSATP 161
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
Score = 59 (25.8 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TFA VD+
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDK 77
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 161 (61.7 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 51/153 (33%), Positives = 74/153 (48%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++S+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 96 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 153
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 184
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 154 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 211
Query: 185 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
P T+ + YG W G +G G P G
Sbjct: 212 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 242
Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 145 RSHEICGQQVAIDSATP 161
R H + G+ + TP
Sbjct: 61 RPHTLDGRNIDPKPCTP 77
Score = 40 (19.1 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 33 KDKTTNQSRGFGFVKF 48
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 161 (61.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 51/153 (33%), Positives = 74/153 (48%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++S+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 106 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 184
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 221
Query: 185 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
P T+ + YG W G +G G P G
Sbjct: 222 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 136 (52.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 161 (61.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 51/153 (33%), Positives = 74/153 (48%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++S+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 106 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 184
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 221
Query: 185 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
P T+ + YG W G +G G P G
Sbjct: 222 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 136 (52.9 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 161 (61.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 51/153 (33%), Positives = 74/153 (48%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++S+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 106 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 184
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 221
Query: 185 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
P T+ + YG W G +G G P G
Sbjct: 222 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 252
Score = 136 (52.9 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVV 138
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F + V
Sbjct: 6 ADEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
++ R H + G+ + TP
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 156 (60.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 46/131 (35%), Positives = 61/131 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 192
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 170 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 229
Query: 193 YGSLDFDDWGY 203
Y +GY
Sbjct: 230 YPGFA-PSYGY 239
Score = 149 (57.5 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 70 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFG 129
PG+ G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFG
Sbjct: 7 PGTS-GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 130 FVTFAEEVVADRV-SRRSHEICGQQVAIDSATP 161
FVTFA+ D+V + HE+ + + A P
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFP 98
Score = 59 (25.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TFA VD+
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDK 77
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 159 (61.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 34/85 (40%), Positives = 46/85 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED++ YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 141 (54.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 146 S-HEICGQQVAIDSATP 161
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 51 (23.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDK 76
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 159 (61.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 34/85 (40%), Positives = 46/85 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED++ YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 141 (54.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 146 S-HEICGQQVAIDSATP 161
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 51 (23.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDK 76
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 159 (61.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 34/85 (40%), Positives = 46/85 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED++ YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 141 (54.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 146 S-HEICGQQVAIDSATP 161
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 51 (23.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDK 76
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 159 (61.0 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 35/87 (40%), Positives = 50/87 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+KIFVG L T + +R ++S+FG I D+ V +DP RGFGFVTF+ + D +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQN 170
+R H I G+ V A P DD S++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 116 (45.9 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 37/136 (27%), Positives = 60/136 (44%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ES+ K+++V + ++ T + L YF+++G + + D RGFGFVTF +
Sbjct: 106 RSESNVST-KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG 194
D+ V ++SH + G + + D+ +Q M ET GG + G G
Sbjct: 165 HDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQ--MNRDRETRGGRSRDGQRGGYNGG 222
Query: 195 SLDFDDWGYGMGSGRP 210
WG G P
Sbjct: 223 GGGGGGWGGPAQRGGP 238
Score = 57 (25.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+TF+ VD A
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAA 80
Score = 49 (22.3 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GG+GGP + +G G G G +G W
Sbjct: 292 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGW 327
Score = 46 (21.3 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGR 209
GG+GG + G G W + G R
Sbjct: 315 GGWGGQGQQQGGWGGQSGAQQWAHAQGGNR 344
Score = 45 (20.9 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGS-GRPSRGDW 215
G YGGP YG D+G G G G +G W
Sbjct: 239 GAYGGPGGGGQGGYGG----DYGGGWGQQGGGGQGGW 271
Score = 42 (19.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GG+GGP + G G WG G G+ G W
Sbjct: 269 GGWGGPQQQQG---GG----GWGQQGGGGQ---GGW 294
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 159 (61.0 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 144 RRSHEICGQQVAIDSATP 161
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
Score = 41 (19.5 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F + V++ +++ R GR+
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRV 144
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 159 (61.0 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 144 RRSHEICGQQVAIDSATP 161
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
Score = 41 (19.5 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F + V++ +++ R GR+
Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRV 144
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 149 (57.5 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 42/133 (31%), Positives = 65/133 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KK++VG + ++ +LR YF ++G+I + V + + RGF FVTF + D++ +
Sbjct: 116 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQ 175
Query: 145 RSHEICGQQVAIDS--ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 202
+ H I G + + + AG SQ A+ F G GG GR +G G
Sbjct: 176 KHHAINGNNCEVGKVLSKEMQSAG-SQRGRGGASGNFMGRGGNFG--GRNFGGRG----G 228
Query: 203 YGMGSGRPSRGDW 215
YG G G SRG +
Sbjct: 229 YG-GGGGGSRGSY 240
Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
Identities = 45/150 (30%), Positives = 70/150 (46%)
Query: 74 YGRGESSQRIGK---KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
+G G+ S K K+F+G L E T + LR +F ++G + D KR+ RGFGF
Sbjct: 18 WGTGKHSPGTEKELRKLFIGGLSFETTDDSLREHFEKWGTLTDC----GNKRS--RGFGF 71
Query: 131 VTFA--EEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP--- 185
+T++ EEV A V R H+ + V + + D P + M+ GG
Sbjct: 72 LTYSCVEEVDA-AVCARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYV-GGIKEDTEE 129
Query: 186 --MRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
+R Y + YG ++ + G SG+ RG
Sbjct: 130 YNLRGYFKKYGKIETIEVMEGRQSGK-KRG 158
Score = 59 (25.8 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRAT---PKEDDFRPVGR 39
D G+K RG GF+T++ VD A P + R VG+
Sbjct: 60 DCGNKRSRGFGFLTYSCVEEVDAAVCARPHKAAVRVVGK 98
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 159 (61.0 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 144 RRSHEICGQQVAIDSATP 161
++ H + G + I A P
Sbjct: 232 KKFHTVSGSKCEIKVAQP 249
Score = 128 (50.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 145 RSHEICGQQV 154
+ H + G+ +
Sbjct: 149 KEHRLDGRVI 158
Score = 41 (19.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40
D + RG GFI F + V++ +++ R GR+
Sbjct: 122 DPNTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRV 157
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 176 (67.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 44/114 (38%), Positives = 60/114 (52%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
K+F+G + + E L+ YFS FG +++ + KD + TG RGFGFV FA+ VA+ V
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD-RTTGRARGFGFVVFADPAVAEIVIT 65
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFM--MNAAETFGGYGGPMRTYGRMYGSL 196
H I G+ V A P DD QN + N++ G GGP RT G L
Sbjct: 66 EKHNIDGRLVEAKKAVPRDD----QNMVNRSNSSSIQGSPGGPGRTRKIFVGGL 115
Score = 173 (66.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 52/180 (28%), Positives = 83/180 (46%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 62
KD+ + RG GF+ FA V + ++ + GR+ + R
Sbjct: 39 KDRTTGRARGFGFVVFADPAVAEIVITEKHNID--GRLVEAKKAVPRDDQNMVNRS---N 93
Query: 63 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR 122
+ ++ PG G G + +KIFVG LP T D + YF +FG DV V D
Sbjct: 94 SSSIQGSPG---GPGRT-----RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNT 145
Query: 123 TGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLD-DAGPSQNFMMNAAETFG 180
RGFGF+T+ E ++V ++ HE+ G+ V + A P + GPS++ + A ++G
Sbjct: 146 QRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRS-PLGAGYSYG 204
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 149 (57.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 42/133 (31%), Positives = 65/133 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KK++VG + ++ +LR YF ++G+I + V + + RGF FVTF + D++ +
Sbjct: 86 KKLYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQ 145
Query: 145 RSHEICGQQVAIDS--ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 202
+ H I G + + + AG SQ A+ F G GG GR +G G
Sbjct: 146 KHHAINGNNCEVGKVLSKEMQSAG-SQRGRGGASGNFMGRGGNFG--GRNFGGRG----G 198
Query: 203 YGMGSGRPSRGDW 215
YG G G SRG +
Sbjct: 199 YG-GGGGGSRGSY 210
Score = 110 (43.8 bits), Expect = 0.00036, P = 0.00036
Identities = 41/136 (30%), Positives = 65/136 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D KR+ RGFGF+T++ EEV A V
Sbjct: 2 RKLFIGGLSFETTDDSLREHFEKWGTLTDC----GNKRS--RGFGFLTYSCVEEVDA-AV 54
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 197
R H+ + V + + D P + M+ GG +R Y + YG ++
Sbjct: 55 CARPHKAAVRVVGKRAVSREDSVKPGAHLMVKKLYV-GGIKEDTEEYNLRGYFKKYGKIE 113
Query: 198 FDDWGYGMGSGRPSRG 213
+ G SG+ RG
Sbjct: 114 TIEVMEGRQSGK-KRG 128
Score = 59 (25.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRAT---PKEDDFRPVGR 39
D G+K RG GF+T++ VD A P + R VG+
Sbjct: 30 DCGNKRSRGFGFLTYSCVEEVDAAVCARPHKAAVRVVGK 68
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 160 (61.4 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 50/148 (33%), Positives = 76/148 (51%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R E+S+ KIFVG +P +L+ YF+RFG + +V + D ++ RGFGF+TF +
Sbjct: 107 RTENSR--SNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFED 164
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA----GP--SQNFMMNAAE-TFGGYGG-PM 186
E D+ V+ H+I G++V + A P D GP S + A + T G+ G P
Sbjct: 165 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPP 224
Query: 187 RTY-GR----MYGSLDFDDWGYGMGSGR 209
+T+ G M+ GYG +GR
Sbjct: 225 QTWQGYSPQGMWMPTGQTIGGYGQPAGR 252
Score = 137 (53.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-E 136
+ IGK +FVG L T E LR YFS++G ++D + KD RGFGFV F +
Sbjct: 4 QGGDEIGK-LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 137 VVADRVSRRSHEICGQQVAIDSATP 161
V ++ R H + G+ + TP
Sbjct: 63 CVGTVLASRPHTLDGRNIDPKPCTP 87
Score = 40 (19.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 3 KDQGSKAHRGIGFITF 18
KD+ + RG GF+ F
Sbjct: 43 KDKTTNQSRGFGFVKF 58
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 156 (60.0 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+F+G L T E+L+ +F ++G I+DV V KDP+ RGFGF+T++ + D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 145 -RSHEICGQQVAIDSATPLDD 164
R H+I G+ V A P D
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQD 111
Score = 152 (58.6 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 44/135 (32%), Positives = 65/135 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVS 143
KK+FVG L + + +R YF FG I+D+ + D K TG RGF FV F + D+V
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVID-KETGKKRGFAFVEFDDYDPVDKVV 180
Query: 144 -RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 202
++ H++ G+ V + A P QN GG GGP G G++ ++G
Sbjct: 181 LQKQHQLNGKMVDVKKALP------KQNDQQGGG---GGRGGPGGRAGGNRGNMGGGNYG 231
Query: 203 YGMGSGRPSRG--DW 215
G G + G +W
Sbjct: 232 NQNGGGNWNNGGNNW 246
Score = 60 (26.2 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
KD +K RG GFIT++ + ++D A
Sbjct: 64 KDPRTKRSRGFGFITYSHSSMIDEA 88
Score = 42 (19.8 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDD-WGYGMGSGRPSRG--DW 215
++ G + N+ N+ FGG GG YG S ++ W G G G G +W
Sbjct: 248 NNRGGNDNWGNNS---FGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFGGGGNNW 300
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 153 (58.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 145 -RSHEICGQQVAIDSATP 161
HEI + V A P
Sbjct: 170 IHFHEINNKMVECKKAQP 187
Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 134
G SQ K+F+G L + + + LR YF +FG I + V +DP RGFGF+TFA
Sbjct: 11 GSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFA 70
Query: 135 EEVVADRV-SRRSHEICGQQVAIDSATP 161
+ D+V ++ HE+ + + A P
Sbjct: 71 DVSSVDKVLAQPHHELDSKTIDPKVAFP 98
Score = 59 (25.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GFITFA VD+
Sbjct: 54 RDPTTKRSRGFGFITFADVSSVDK 77
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 171 (65.3 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 66/223 (29%), Positives = 94/223 (42%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 62
+++ + RG GF+ F+ V+DR +D R S A R
Sbjct: 39 REKATGRPRGFGFVAFSDPAVIDRVL--QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFN 96
Query: 63 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR 122
A +D G + + KKIFVG LP T+++ R YF +G + D + D
Sbjct: 97 ASRNFDS-------GANVRT--KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTT 147
Query: 123 TGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLDDAGPS----QNFMMNAAE 177
RGFGFV+F E D V ++ H++ G+QV + A P DA P A
Sbjct: 148 QRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALP-KDANPGIASGGGRGSGGAG 206
Query: 178 TFGGYGGPMRTYGRMY-GSLDFDDW--GYGMGSGRPSRGDWRY 217
F GYGG + G Y G +D + + GSG P G Y
Sbjct: 207 GFPGYGG---SGGSGYEGRVDSNRYMQPQNTGSGYPPYGGSGY 246
Score = 158 (60.7 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
K+F+G + + LR YFS FG +L V V ++ K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMRE-KATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 145 RSHEICGQQVAIDSATPLDDAGPS-QNFMMNAAETFGGYGGPMRTYGRMYGSL 196
H I + V + A ++ P+ ++ NA+ F G +RT G L
Sbjct: 66 DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDS-GANVRTKKIFVGGL 117
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 167 (63.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 44/139 (31%), Positives = 68/139 (48%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 138
+ R KK+FVG LP + + +DLR +F +FG++ D+ P D + R F F+ F EE
Sbjct: 104 AKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEES 163
Query: 139 ADRVSRRSHEICG-QQVAIDSATPLDDAGP-SQNFMMNAAETFGGYGGPMRTYGRMYGSL 196
AD+ S ++ + G ++ + A P P +Q M +GG GG + G G
Sbjct: 164 ADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMPGGRGMYGGRGGNNNS-GWYAGWG 222
Query: 197 DFDDWGYGMGSGRPSRGDW 215
YG +G + GDW
Sbjct: 223 QIGAMPYG-ATGA-AWGDW 239
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 158 (60.7 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 51/147 (34%), Positives = 70/147 (47%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTF 133
G+ E ++ KKIFVG L + E L+ YFS+FG I V D K TG RGFGFV F
Sbjct: 88 GKPEMLAKV-KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITD-KDTGKKRGFGFVYF 145
Query: 134 AEEVVADR-VSRRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFG-GYGGPMRT 188
+ AD+ V + H ICG +V + A + G + G G+GG R
Sbjct: 146 DDNDSADKAVVMKFHSICGHKVEVKKALTKQEMQSTGGGRGGRGGRGMGRGSGFGGGGR- 204
Query: 189 YGRMYGSLDFDDWGYGMGSGRPSRGDW 215
G Y + + G+G SG S+ +
Sbjct: 205 -GGYYNDYGYQNNGFGNNSGYDSQNGY 230
Score = 124 (48.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSR 144
K+FVG L + T E LR +F ++G++ D V + R FGFVT++ AD +S
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 145 RSHEICGQQVAIDSATPLDDAG 166
R H + G V + A +DAG
Sbjct: 67 RPHIVDGNNVDLKRAVAREDAG 88
Score = 37 (18.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 163 DDAGPSQN-FMMNAA-ETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGD 214
+D G N F N+ ++ GYGG Y G GYG G+G G+
Sbjct: 209 NDYGYQNNGFGNNSGYDSQNGYGGG---YSDQMGG------GYGNGNGYSDFGE 253
Score = 36 (17.7 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRA 27
+Q + R GF+T++S D A
Sbjct: 40 NQPLQRSRCFGFVTYSSTEEADAA 63
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 160 (61.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 34/85 (40%), Positives = 47/85 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 41 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 100
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 101 IHFHEINNKMVECKKAQPKEVMSPT 125
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 152 (58.6 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 33/85 (38%), Positives = 46/85 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +F ++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 141 (54.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 146 S-HEICGQQVAIDSATP 161
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
Score = 51 (23.0 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TF VD+
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDK 76
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 150 (57.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 45/141 (31%), Positives = 63/141 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 163
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG G
Sbjct: 164 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGGNFGRGGNYG 222
Query: 194 GSLDFDDWGYGMGSGRPSRGD 214
G + G G G G P G+
Sbjct: 223 GGPGYSSRG-GYGGGGPGYGN 242
Score = 136 (52.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 71
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 72 CARPHKVDGRVVEPKRAVSREDS 94
Score = 52 (23.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 46 RDPQTKRSRGFGFVTYSCVEEVDAA 70
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 293 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 322
Score = 45 (20.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG YG G GYG G G
Sbjct: 231 GGYGGGGPGYGNQGG-------GYGGGGG 252
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 51/153 (33%), Positives = 74/153 (48%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++S+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 49 RSDNSK--SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 106
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDA-------GPSQ---NFMMNAAETFGGYGG 184
E D+ V+ H+I G++V + A P D G SQ + NAA G G
Sbjct: 107 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 164
Query: 185 PMRTYGRMYGSLDFDDW---GYGMGS-GRPSRG 213
P T+ + YG W G +G G P G
Sbjct: 165 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPAG 195
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 48/132 (36%), Positives = 69/132 (52%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGPMRTYGRMYGSLD--- 197
+ R H++ G+ V A +D+ P + + + F GG+GG R G GS D
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGFGGS-RGGGGYGGSGDGYN 129
Query: 198 -FDDWGYGMGSG 208
F + G G G
Sbjct: 130 GFGNDGSNFGGG 141
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 41/128 (32%), Positives = 69/128 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++LR++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 297
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 298 GLGNNQGS 305
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>UNIPROTKB|G3MX91 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
RefSeq:NP_001039950.2 UniGene:Bt.106561 Ensembl:ENSBTAT00000065252
GeneID:540632 KEGG:bta:540632 NextBio:20878740 Uniprot:G3MX91
Length = 414
Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 41/128 (32%), Positives = 69/128 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++LR++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 297
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 298 GLGNNQGS 305
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 147 (56.8 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ E V +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 145 RSHEICGQQVAIDSATPLDDA-GPSQN------FMMNAAETFGGYGGPMRTYGRMYGSLD 197
R H++ G+ V A +D+ P + F+ E G Y +R Y YG ++
Sbjct: 73 RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYN--LRDYFEKYGKIE 130
Score = 144 (55.7 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 44/135 (32%), Positives = 65/135 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 103 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 162
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM + FGG GG +GR
Sbjct: 163 QKYHTINGHNCEVKKALSKQEMQSAGSQRGCGGGSGNFMGHGGN-FGGGGG---NFGRG- 217
Query: 194 GSLDFDDWGYGMGSG 208
G+ + + G G G G
Sbjct: 218 GNSGYGNQGGGYGGG 232
Score = 47 (21.6 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T+ S VD A
Sbjct: 46 RDPQTKRSRGFGFVTY-SCEEVDAA 69
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 160 (61.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 38/112 (33%), Positives = 63/112 (56%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++LR++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGG-PMRTYGRMYG 194
+CG+ + I + + +A P N E G +GG P+ +YG
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPVHLISNVYG 289
Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>UNIPROTKB|B4DJ45 [details] [associations]
symbol:TARDBP "cDNA FLJ58188, highly similar to TAR
DNA-binding protein 43" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP EMBL:AK295920 IPI:IPI00910355
SMR:B4DJ45 STRING:B4DJ45 Ensembl:ENST00000439080 UCSC:uc010oap.2
Uniprot:B4DJ45
Length = 298
Score = 160 (61.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 40/128 (31%), Positives = 68/128 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ T ++LR +FS++G ++DV++PK P R F FVTFA++ +A
Sbjct: 75 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-P----FRAFAFVTFADDQIAQ---- 125
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 126 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 181
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 182 GLGNNQGS 189
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 147 (56.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 48/142 (33%), Positives = 66/142 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 194 GSLDFDDWGYGMGSGRPSRGDW 215
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 136 (52.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 52 (23.4 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 291 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 320
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 159 (61.0 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 40/128 (31%), Positives = 69/128 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++L+++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 124 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 174
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 175 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 230
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 231 GLGNNQGS 238
Score = 134 (52.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 34 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTEYETQ 91
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 92 VKVMSQRHMIDGR 104
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 144 (55.7 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 45/150 (30%), Positives = 67/150 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KK+FVG + ++ LR YF ++G+I + + D + RGFGF+TF + D+ V
Sbjct: 112 KKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVL 171
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG-GY----GGPMRT-YGRM----- 192
+++H I G + + A + Q+ G GY GG + GR
Sbjct: 172 QKNHTINGHRAEVRKALSRQERQEGQHLRSRGEGDVGLGYFHGVGGNVGAGRGRNFRGGA 231
Query: 193 --YG-SLDFDDWGYGMGSGRPSRGDWRYRP 219
YG F D +G G GR G W RP
Sbjct: 232 GGYGRGRQFGDGSHGYG-GRAGGGSWGVRP 260
Score = 134 (52.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 39/129 (30%), Positives = 59/129 (45%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
RG+ K+F+G L E T E L Y+ ++G + D + +DP R FGF+TF+
Sbjct: 12 RGKRENEQFCKLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSS 71
Query: 136 EVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGPM-----RT 188
D ++ R H I G+ V A P +D G ++ + F GG M R
Sbjct: 72 MAELDAAMAARPHFIDGKMVMPKRAVPREDHG-KLGALITVKKLFVGGITEDMKEHHLRD 130
Query: 189 YGRMYGSLD 197
Y YG ++
Sbjct: 131 YFEKYGKIN 139
Score = 58 (25.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDF---------RPVGRMSHGGYGA 47
+D S+ R GFITF+S +D A F R V R HG GA
Sbjct: 54 RDPASQKSRRFGFITFSSMAELDAAMAARPHFIDGKMVMPKRAVPREDHGKLGA 107
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 144 (55.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 48/142 (33%), Positives = 66/142 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 100 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 159
Query: 144 RRSHEICGQQVAIDSATPLDDA---------GPSQNFMMNAAETFGGYGGPMRTYGRMYG 194
++ H I G + A + G S NFM FGG GG +GR G
Sbjct: 160 QKYHTINGHNCEVKKALSKQEMQTASSQRGKGGSGNFMGRG--NFGGGGG---NFGR--G 212
Query: 195 SLDFDDWGYGMGSGRP-SRGDW 215
GYG G G SRG +
Sbjct: 213 GNFGGRGGYGGGGGGGGSRGSF 234
Score = 141 (54.7 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 67
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
S R H++ G+ V A +D+
Sbjct: 68 SARPHKVDGRVVEPKRAVSREDS 90
Score = 52 (23.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 42 RDPQTKRSRGFGFVTYSCVEEVDAA 66
Score = 48 (22.0 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GG GG ++G G F D YG GSG
Sbjct: 225 GGGGGSRGSFGGGDGYNGFGDGNYG-GSG 252
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 160 (61.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 47/142 (33%), Positives = 68/142 (47%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEV 137
SS K+FVG + E TAE YF +FG ++D + D + TG+ RGFGFVTFA+
Sbjct: 60 SSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTD-RITGNPRGFGFVTFADSA 118
Query: 138 VADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM------RTYGR 191
VA++V H I ++V + P D + + F G P+ + Y
Sbjct: 119 VAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC 178
Query: 192 MYGSLDFDDWGYGMGSGRPSRG 213
+YG + Y +GR SRG
Sbjct: 179 VYGDIIEHQIMYDHHTGR-SRG 199
Score = 130 (50.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 45/128 (35%), Positives = 62/128 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRV- 142
+KIFVG LP ++L+ YF +G I++ + D TG RGFGFVTF E DR+
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYD-HHTGRSRGFGFVTFQTEDSVDRLF 215
Query: 143 -SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDW 201
+ HE+ +QV I A P G +F A G Y G+ + D+ +
Sbjct: 216 SDGKVHELGDKQVEIKRAEP-KRTGRDNSFRSYGAS--GKYDQEDSYSGK--ANEDYSMY 270
Query: 202 -GYGMGSG 208
GYG G G
Sbjct: 271 SGYG-GYG 277
Score = 52 (23.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+TFA + V ++ +ED
Sbjct: 107 RGFGFVTFADSAVAEKVL-EED 127
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 150 (57.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 46/137 (33%), Positives = 67/137 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 110 KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 169
Query: 144 RRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG-SLDFD 199
++ H I G + A + AG SQ + F G+GG G +G +F
Sbjct: 170 QKYHTINGHNCEVKKALSKQEMQSAG-SQRGCGGGSGNFMGHGGNFGGGGGNFGRGGNFG 228
Query: 200 D-WGYGMGSGRPSRGDW 215
GYG G G SRG +
Sbjct: 229 GRGGYG-GGGGGSRGSY 244
Score = 126 (49.4 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 38/127 (29%), Positives = 61/127 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFS-------RFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 137
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ E
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 138 VADRVSRRSHEICGQQVAIDSATPLDDA-GPSQN------FMMNAAETFGGYGGPMRTYG 190
V + R H++ G+ V A +D+ P + F+ E G Y +R Y
Sbjct: 73 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYN--LRDYF 130
Query: 191 RMYGSLD 197
YG ++
Sbjct: 131 EKYGKIE 137
Score = 47 (21.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T+ S VD A
Sbjct: 53 RDPQTKRSRGFGFVTY-SCEEVDAA 76
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 148 (57.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 44/146 (30%), Positives = 69/146 (47%)
Query: 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADR 141
+ KKIF+G + ++ +LR YF ++G+I + + ++ +++G RGF FVTF + D+
Sbjct: 100 LAKKIFIGGIKEDTEEHNLRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDK 159
Query: 142 -VSRRSHEICGQQVAIDSATPLDDAGPS---QNFMMNAAETFGGYGGPMRTYGRMYG-SL 196
V ++ H I + A P PS Q + F G GG R +G
Sbjct: 160 IVVQKCHTINRHNCDVKKA-PSKQEMPSVRSQRCRGGRSSNFMGRGGNFGHGRRNFGHGG 218
Query: 197 DFDDWGYGMGSGRPSRG--DWRYRPY 220
+F G G G R S G D RY +
Sbjct: 219 NFGGRGGGSGGSRGSYGGGDGRYNGF 244
Score = 41 (19.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRA 27
D +K R GF+T++ VD A
Sbjct: 46 DPQTKRSRVFGFVTYSCVKEVDAA 69
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 150 (57.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 45/142 (31%), Positives = 65/142 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPMRTYGRMYG---SLDFD 199
R H+I + I A P + Q GG GG R GR G + F+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGA-RGRGRGQGQNWNQGFN 254
Query: 200 DW-GYGMGSGRPSRGDWRYRPY 220
++ G G+ + GD Y Y
Sbjct: 255 NYYDQGYGNYNSAYGDESYSGY 276
Score = 137 (53.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 37/111 (33%), Positives = 53/111 (47%)
Query: 59 AALGAPTLYDHPGSFYGRGESS-QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 117
AA AP+L S SS G K+F+G L + + +DL Y SRFG ++D +
Sbjct: 24 AARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 83
Query: 118 KDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
DP RGFGFV F + D+V + H++ G+ + A L P
Sbjct: 84 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 134
Score = 53 (23.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 177 ETFGGYGGPMRTYGRMYGSLDFDDWGY----GMGS--GRPSRGDWR----YRPY 220
E++ GYGG T G YGS + GY G S G+ SRG Y+PY
Sbjct: 271 ESYSGYGGYDYT-GYNYGSYGYGQ-GYTDYSGQQSTYGKASRGGGNHQNNYQPY 322
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 92 RGFGFVLFKDAASVDK 107
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 150 (57.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 45/142 (31%), Positives = 65/142 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPMRTYGRMYG---SLDFD 199
R H+I + I A P + Q GG GG R GR G + F+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGA-RGRGRGQGQNWNQGFN 254
Query: 200 DW-GYGMGSGRPSRGDWRYRPY 220
++ G G+ + GD Y Y
Sbjct: 255 NYYDQGYGNYNSAYGDESYSGY 276
Score = 137 (53.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 37/111 (33%), Positives = 53/111 (47%)
Query: 59 AALGAPTLYDHPGSFYGRGESS-QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVP 117
AA AP+L S SS G K+F+G L + + +DL Y SRFG ++D +
Sbjct: 24 AARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 83
Query: 118 KDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
DP RGFGFV F + D+V + H++ G+ + A L P
Sbjct: 84 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 134
Score = 53 (23.7 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 177 ETFGGYGGPMRTYGRMYGSLDFDDWGY----GMGS--GRPSRGDWR----YRPY 220
E++ GYGG T G YGS + GY G S G+ SRG Y+PY
Sbjct: 271 ESYSGYGGYDYT-GYNYGSYGYGQ-GYTDYSGQQSTYGKASRGGGNHQNNYQPY 322
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 92 RGFGFVLFKDAASVDK 107
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 147 (56.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/120 (33%), Positives = 60/120 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVSR 144
K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 145 RSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 197
R H I G+ V A +++G P + + + F GG +R Y YG +D
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKID 127
Score = 136 (52.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 45/139 (32%), Positives = 63/139 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KK+FVG + ++ LR YF +G+I + + D +++G RGFGFVTF + D+ V
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD-RQSGKRGFGFVTFDDHDPVDKIVL 158
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAET--FGGYGGPMRTYGRMYGSLDFDDW 201
++ H G + A + QN T FG G G GS +F
Sbjct: 159 QKYHTKNGHNAEVRKALSRQEMQEVQNSRSGRPRTLLFGDSRGGGGNSGPGPGS-NFRGG 217
Query: 202 GYGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 218 SDGYGSGR-GFGDG-YNGY 234
Score = 65 (27.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D SK RG GF+TF+S VD A P D R V
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVV 79
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 147 (56.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 48/142 (33%), Positives = 66/142 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 194 GSLDFDDWGYGMGSGRPSRGDW 215
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 136 (52.9 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 53 (23.7 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 180 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 349 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 378
Score = 45 (20.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG YG G GYG G G
Sbjct: 287 GGYGGGGPGYGNQGG-------GYGGGGG 308
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 147 (56.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 48/142 (33%), Positives = 66/142 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 194 GSLDFDDWGYGMGSGRPSRGDW 215
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 136 (52.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 53 (23.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 180 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47 (21.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 350 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 379
Score = 45 (20.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG YG G GYG G G
Sbjct: 287 GGYGGGGPGYGNQGG-------GYGGGGG 308
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GGYGG Y +F YG G G++
Sbjct: 301 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 336
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 147 (56.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 48/142 (33%), Positives = 66/142 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 194 GSLDFDDWGYGMGSGRPSRGDW 215
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 136 (52.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 53 (23.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 180 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47 (21.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 350 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 379
Score = 45 (20.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG YG G GYG G G
Sbjct: 287 GGYGGGGPGYGNQGG-------GYGGGGG 308
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GGYGG Y +F YG G G++
Sbjct: 301 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 336
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 147 (56.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 48/142 (33%), Positives = 66/142 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 239
Query: 194 GSLDFDDWGYGMGSGRPSRGDW 215
G GYG G G SRG +
Sbjct: 240 GGNFGGRGGYG-GGGGGSRGSY 260
Score = 136 (52.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 53 (23.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 180 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
GG GG +YG Y D YG G G SRG +
Sbjct: 251 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 52 (23.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47 (21.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 351 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 380
Score = 41 (19.5 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
GGYG YG G D + G G G G
Sbjct: 295 GGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGG 328
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 179 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRP 210
+ G+GG YG G + G G G G P
Sbjct: 267 YNGFGGDGGNYG---GGPGYSSRG-GYGGGGP 294
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GGYGG Y +F YG G G++
Sbjct: 302 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 337
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 160 (61.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 43/116 (37%), Positives = 64/116 (55%)
Query: 70 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFG 129
P S G E + +K+FVGR ++ TA++LR++F ++G + DV++PK P R F
Sbjct: 184 PNSKQGIDEPMR--SRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPK-P----FRAFA 236
Query: 130 FVTFAEEVVADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG-GYGG 184
FVTFA++ VA + I G V I +A P + + MM A FG G+GG
Sbjct: 237 FVTFADDQVAAALCGEDLIIKGVSVHISNAEPKHN---NTRQMMERAGRFGNGFGG 289
Score = 116 (45.9 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
RG+ Q+ I +G LP + + +DL+ YF FG ++ V V +D K +GFGFV F +
Sbjct: 104 RGD--QKTSDLIVLG-LPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGD 160
Query: 136 EVVADRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 161 WETQSKVMTQRHMIDGR 177
Score = 41 (19.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 165 AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
+G S + ++ + Y YG +L WG G SG S G
Sbjct: 349 SGTSTSGTSSSRDQAQTYSSANSNYGSSSAALG---WGTGSNSGAASAG 394
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 160 (61.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 40/128 (31%), Positives = 68/128 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ T ++LR +FS++G ++DV++PK P R F FVTFA++ +A
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-P----FRAFAFVTFADDQIAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 297
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 298 GLGNNQGS 305
Score = 135 (52.6 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 181
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
>MGI|MGI:2387629 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0043922 "negative regulation by host of
viral transcription" evidence=ISO] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2387629 GO:GO:0005634 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003730 GO:GO:0003690 GO:GO:0043922 GO:GO:0070935
UniGene:Mm.378962 CTD:23435 eggNOG:NOG145464 HOGENOM:HOG000254792
HOVERGEN:HBG058671 OrthoDB:EOG447FTT OMA:QFFSQYG EMBL:AK133207
EMBL:AK153803 EMBL:BC012873 EMBL:BC025544 EMBL:BC027772
EMBL:BC031126 EMBL:BC033475 IPI:IPI00121758 RefSeq:NP_663531.1
UniGene:Mm.22453 PDB:3D2W PDBsum:3D2W ProteinModelPortal:Q921F2
SMR:Q921F2 STRING:Q921F2 PhosphoSite:Q921F2
REPRODUCTION-2DPAGE:Q921F2 PaxDb:Q921F2 PRIDE:Q921F2
Ensembl:ENSMUST00000084125 GeneID:230908 KEGG:mmu:230908
GeneTree:ENSGT00570000079202 InParanoid:Q3V0E7
EvolutionaryTrace:Q921F2 NextBio:380280 Bgee:Q921F2
CleanEx:MM_TARDBP Genevestigator:Q921F2
GermOnline:ENSMUSG00000041459 Uniprot:Q921F2
Length = 414
Score = 160 (61.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 40/126 (31%), Positives = 68/126 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TAE+L+++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDKVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 297
Query: 204 GMGSGR 209
G+G+ +
Sbjct: 298 GLGNNQ 303
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 148 (57.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 197
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 174 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 233
Query: 198 FDDWGYGMGSGRPSRGDWRYRPY 220
+ D GYG + GD Y Y
Sbjct: 234 YYDQGYGNYNSAYG-GDQNYSGY 255
Score = 133 (51.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + DP RGFGF
Sbjct: 16 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 74
Query: 131 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
V F + D+V + H++ G+ + A L P
Sbjct: 75 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 112
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 247 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 301
Score = 46 (21.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 206
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 236 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 273
Score = 44 (20.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 70 RGFGFVLFKDAASVDK 85
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 146 (56.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 45/136 (33%), Positives = 64/136 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 185
Query: 144 RRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H I G + A + AG SQ + F G GG G +F
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAG-SQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGG 244
Query: 201 -WGYGMGSGRPSRGDW 215
GYG G G SRG +
Sbjct: 245 RGGYG-GGGGGSRGSY 259
Score = 136 (52.9 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 53 (23.7 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 180 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
GG GG +YG Y D YG G G SRG +
Sbjct: 250 GGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 288
Score = 52 (23.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAA 92
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 349 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 378
Score = 45 (20.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG YG G GYG G G
Sbjct: 286 GGYGGGGPGYGNQGG-------GYGGGGG 307
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GGYGG Y +F YG G G++
Sbjct: 300 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 335
>UNIPROTKB|I3LNA4 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 OMA:PSISRIF EMBL:CU694468
Ensembl:ENSSSCT00000022360 Uniprot:I3LNA4
Length = 413
Score = 159 (61.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 40/128 (31%), Positives = 69/128 (53%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++L+++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 190 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 240
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 241 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPGGFGNQGGFGNSRGGGA 296
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 297 GLGNNQGS 304
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 100 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTEYETQ 157
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 158 VKVMSQRHMIDGR 170
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 159 (61.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 40/128 (31%), Positives = 70/128 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++L+++F+++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERGGRFGGNPGGFGNQGGFGNSRGGGG 297
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 298 GLGNNQGS 305
Score = 131 (51.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTDYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 159 (61.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 40/128 (31%), Positives = 70/128 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++L+++F+++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPK-P----FRAFAFVTFADDQVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+CG+ + I + + +A P N E G +GG +G G + G
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERGGRFGGNPGGFGNQGGFGNSRGGGG 297
Query: 204 GMGSGRPS 211
G+G+ + S
Sbjct: 298 GLGNNQGS 305
Score = 131 (51.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTDYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 156 (60.0 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 46/131 (35%), Positives = 61/131 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 49 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 108
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQN--------FMMNAAET-FG--GYGGPMRTYGRM 192
HEI + V A P + P + M+A G GY + TYGR
Sbjct: 109 IHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG 168
Query: 193 YGSLDFDDWGY 203
Y +GY
Sbjct: 169 YPGFA-PSYGY 178
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 157 (60.3 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 37/112 (33%), Positives = 62/112 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ T ++LR +FS++G ++DV++PK P R F FVTFA++ +A
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-P----FRAFAFVTFADDQIAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGG-PMRTYGRMYG 194
+CG+ + I + + +A P N E G +GG P+ +YG
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGNPVHLISNVYG 289
Score = 135 (52.6 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 181
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 134
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 135 EEVVADRVSRRSH 147
+ D+V + H
Sbjct: 71 DPASVDKVLGQPH 83
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 142 (55.0 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 42/130 (32%), Positives = 60/130 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 112 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 171
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H I G + A S+ M A+ G GG GR G+ G
Sbjct: 172 QKYHTINGHNCEVKKAL-------SKQEMQTASSQRGRGGGSGNFMGR--GNFGGGGGGG 222
Query: 204 GMGSGRPSRG 213
G G G P G
Sbjct: 223 GPGYGNPGGG 232
Score = 141 (54.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 79
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
S R H++ G+ V A +D+
Sbjct: 80 SARPHKVDGRVVEPKRAVSREDS 102
Score = 52 (23.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 54 RDPQTKRSRGFGFVTYSCVEEVDAA 78
Score = 51 (23.0 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 179 FGGYGGPMRT-YGRMYGSLDFDD--------WGYGMGSGRPSRGDWRY 217
FG Y G ++ YG M G F GYG GSG G R+
Sbjct: 263 FGNYSGQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGSGGYGGRRF 310
Score = 43 (20.2 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
GYG P YG G D + G G G G Y +
Sbjct: 225 GYGNPGGGYGGGGGGYDGYNEGGNFGGGNYG-GSGNYNDF 263
Score = 40 (19.1 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG Y +F YG GSG
Sbjct: 231 GGYGGGGGGYDGYNEGGNFGGGNYG-GSG 258
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 146 (56.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 175 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 230
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 231 WNQGYGNYGYNSQGYGGYGGY 251
Score = 146 (56.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 64 PTLYDHPGSF--YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK 121
P + H S + ++QR K+F+G L + T +DL+ YFS+FG ++D + DP
Sbjct: 7 PPVVGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 66
Query: 122 RTGHRGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA---- 176
RGFGFV F E D+V ++ H++ G+ + A + P + +
Sbjct: 67 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 126
Query: 177 ------ETFGGYG 183
E FGG+G
Sbjct: 127 PEEKIREYFGGFG 139
Score = 41 (19.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 71 RGFGFVLFKESESVDKVMDQKE 92
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 43/130 (33%), Positives = 65/130 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+F+G L + E L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY--GGPMRTYG-RMYGSLDFDD 200
+ G+Q+ +D A +G + + G+ GG R G R YGS FD+
Sbjct: 66 MNGKAVDGRQIRVDQAGK--SSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDN 123
Query: 201 --WGYGMGSG 208
GYG SG
Sbjct: 124 RSGGYGGSSG 133
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 146 (56.5 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 28 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 87
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 88 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 143
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 144 WNQGYGNYGYNSQGYGGYGGY 164
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 43/130 (33%), Positives = 65/130 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF--AEEVVADRVS 143
K+F+G L E + L + F+++GRI +V V KD + RGFGFVTF ++ ++
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY--GGPMRTYG-RMYGSLDFDD 200
+ G+Q+ +D A +G + + G+ GG R G R YGS FD+
Sbjct: 66 MNGKSVDGRQIRVDQAGK--SSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDN 123
Query: 201 --WGYGMGSG 208
GYG SG
Sbjct: 124 RSGGYGGSSG 133
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 149 (57.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 43/141 (30%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 221 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 276
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G GS G S+G Y Y
Sbjct: 277 WNQGYGSYGYNSQGYGGYGGY 297
Score = 136 (52.9 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 34/109 (31%), Positives = 54/109 (49%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E D+V +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
+ H++ G+ + A + P + + E FGG+G
Sbjct: 137 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 185
Score = 41 (19.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 117 RGFGFVLFKESESVDKVMDQKE 138
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 142 (55.0 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 45/138 (32%), Positives = 69/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NTTPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 132 (51.5 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A P + S + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMA-SASSSQRGRRGSGNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRG 213
G D++G G SGR G
Sbjct: 207 GDGFGGNDNFGRGGNFSGRGGFG 229
Score = 65 (27.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA---TPKEDDFRPV 37
+D +K RG GF+T+A+ VD A TP + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVV 84
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 136 (52.9 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 39/125 (31%), Positives = 59/125 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D++
Sbjct: 90 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVF 149
Query: 145 RSHEI-----CGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFD 199
+ H C + A+ S + AGP + + F G GG G YG+
Sbjct: 150 QEHHAINRHNCEVKKAV-SKQEMQSAGPQRGHG-GGSGNFMGRGGNFGRGGPGYGN---Q 204
Query: 200 DWGYG 204
GYG
Sbjct: 205 GGGYG 209
Score = 45 (20.9 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 4 DQGSKAHRGIGFITFASAVVVDRA 27
D ++ RG GF+T++ VD A
Sbjct: 33 DPQTEHSRGFGFVTYSCVEEVDAA 56
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 143 (55.4 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 44/138 (31%), Positives = 64/138 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 124 KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 183
Query: 144 RRSHEICGQQVAIDSATPLDD--AGPSQNFMMNAAETF---GGYGGPMRTYGRMYGSLDF 198
++ H I G + A + SQ + F G +GG +GR G
Sbjct: 184 QKYHTINGHNCEVKKALSKQEMQTASSQRGRGGGSGNFMGRGNFGGGGGNFGR--GGNFG 241
Query: 199 DDWGYGMGSGRP-SRGDW 215
GYG G G SRG +
Sbjct: 242 GRGGYGGGGGGGGSRGSF 259
Score = 141 (54.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 91
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
S R H++ G+ V A +D+
Sbjct: 92 SARPHKVDGRVVEPKRAVSREDS 114
Score = 52 (23.4 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 66 RDPQTKRSRGFGFVTYSCVEEVDAA 90
Score = 51 (23.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 179 FGGYGGPMRT-YGRMYGSLDFDD--------WGYGMGSGRPSRGDWRY 217
FG Y G ++ YG M G F GYG GSG G R+
Sbjct: 333 FGNYSGQQQSNYGPMKGGGSFGGRSSGSPYGGGYGSGSGSGGYGGRRF 380
Score = 48 (22.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 180 GGYGGPMRTYGRMYGSLDFDD---WGYGMGSGRPSRGDW 215
GG GG ++G G F D YG G G SRG +
Sbjct: 250 GGGGGSRGSFGGGDGYNGFGDVKGGNYGGGPGYGSRGGY 288
Score = 43 (20.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
GYG P YG G D + G G G G Y +
Sbjct: 295 GYGNPGGGYGGGGGGYDGYNEGGNFGGGNYG-GSGNYNDF 333
Score = 42 (19.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
G YGG G YGS G G G G P G
Sbjct: 274 GNYGG-----GPGYGSRGGYGGGGGPGYGNPGGG 302
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG Y +F YG GSG
Sbjct: 301 GGYGGGGGGYDGYNEGGNFGGGNYG-GSG 328
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 146 (56.5 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 42/142 (29%), Positives = 62/142 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 29 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 88
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 89 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQG 148
Query: 201 WG-YGMGS-GRPSRGDWRYRPY 220
+G YG S G G + Y Y
Sbjct: 149 YGNYGYNSPGYGGYGGYDYTGY 170
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 144 (55.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 44/144 (30%), Positives = 65/144 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 144 RRSHEI----CGQQVAI--DSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 197
++ H + C +VA+ + G F+ A G GGP + + + Y +
Sbjct: 144 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRAR---GRGGGPSQNWNQGYSNY- 199
Query: 198 FDDWGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 200 ---WNQGYGNYGYNSQGYGGYGGY 220
Score = 132 (51.5 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRR 145
+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E D+V ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 146 SHEICGQQV 154
H++ G+ +
Sbjct: 61 EHKLNGKVI 69
Score = 41 (19.5 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 40 RGFGFVLFKESESVDKVMDQKE 61
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 149 (57.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 43/141 (30%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 240 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 295
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G GS G S+G Y Y
Sbjct: 296 WNQGYGSYGYNSQGYGGYGGY 316
Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 138
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 139 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 41 (19.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 136 RGFGFVLFKESESVDKVMDQKE 157
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 149 (57.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 43/141 (30%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 240 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 295
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G GS G S+G Y Y
Sbjct: 296 WNQGYGSYGYNSQGYGGYGGY 316
Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 138
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 139 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 41 (19.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 136 RGFGFVLFKESESVDKVMDQKE 157
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 142 (55.0 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 45/140 (32%), Positives = 62/140 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 104 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 163
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG G
Sbjct: 164 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGGNFXRGGNFG 222
Query: 194 GSLDFDDWGYGMGSGRPSRG 213
G +G G G R S G
Sbjct: 223 GK---GXYGGGGGGXRSSYG 239
Score = 136 (52.9 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 71
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 72 CARPHKVDGRVVEPKRAVSREDS 94
Score = 59 (25.8 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 180 GGYGGPMRTYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
GG GG +YG Y D YG GSG SRG +
Sbjct: 229 GGGGGXRSSYGGGDGGYNGFGGDGGNYGGGSGSSSRGGY 267
Score = 52 (23.4 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 46 RDPQTKRSRGFGFVTYSCVEEVDAA 70
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G +GG R+ G YG GYG G G G R+
Sbjct: 328 GSFGG--RSSGSPYGG------GYGSGGGSGGYGSRRF 357
Score = 45 (20.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG YG G GYG G G
Sbjct: 265 GGYGGGGPGYGNQGG-------GYGGGGG 286
Score = 44 (20.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 179 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
+ G+GG YG GS +G G G G ++G
Sbjct: 245 YNGFGGDGGNYGGGSGSSSRGGYGGG-GPGYGNQG 278
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
GGYGG Y +F YG G G++
Sbjct: 279 GGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNY 314
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 144 (55.7 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 44/144 (30%), Positives = 65/144 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 144 RRSHEI----CGQQVAI--DSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 197
++ H + C +VA+ + G F+ A G GGP + + + Y +
Sbjct: 145 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRAR---GRGGGPSQNWNQGYSNY- 200
Query: 198 FDDWGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 201 ---WNQGYGNYGYNSQGYGGYGGY 221
Score = 137 (53.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E D+V +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 145 RSHEICGQQV 154
+ H++ G+ +
Sbjct: 61 KEHKLNGKVI 70
Score = 41 (19.5 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 41 RGFGFVLFKESESVDKVMDQKE 62
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 135 (52.6 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 47/137 (34%), Positives = 61/137 (44%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + +E T LR YF ++G+ + + D R RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGI-KEDTEHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVT 151
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A SQ + FG Y G R YG
Sbjct: 152 FDDHDSVDKIVIQKYHTVNGHNCETRVKQDMASASSSQRGRSGSGN-FG-YSGGSRGYGS 209
Query: 192 MYGSLDFDDWGYGMGSG 208
GYG GSG
Sbjct: 210 GGQGYGNQGSGYG-GSG 225
Score = 135 (52.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 44/137 (32%), Positives = 67/137 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP----MRTYGRMYGSL 196
+ R ++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPQKVNGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEHHLRDYFEQYGKT 130
Query: 197 DFDDWGYGMGSGRPSRG 213
+ + G G+ RG
Sbjct: 131 EVIEIMTDRGRGK-KRG 146
Score = 59 (25.8 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T+A+ VD A
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAA 71
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 141 (54.7 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 42/125 (33%), Positives = 56/125 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + + LR YF +FG+I V + D K RGF FVTF + DR V
Sbjct: 124 KKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVI 183
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + G + A + N GG GG YG G + +D+G
Sbjct: 184 QKYHTVNGHNCEVRKALSKQEMA---NTGRGGGGGGGGGGGNFNRYGNN-GGYN-NDFGG 238
Query: 204 GMGSG 208
G G G
Sbjct: 239 GGGGG 243
Score = 135 (52.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F ++G + D V KDP RGFGFVT++ +EV A +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNAS-M 91
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 92 DARPHKVDGRLVEPKRAVSREDS 114
Score = 55 (24.4 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR---ATPKEDDFRPV 37
KD +K RG GF+T++S V+ A P + D R V
Sbjct: 66 KDPNTKRSRGFGFVTYSSVDEVNASMDARPHKVDGRLV 103
Score = 52 (23.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
GG GG Y G+ ++G G G G S G Y +
Sbjct: 328 GGGGGGYNNYNNGNGNFGGGNFGGGGGGGGNSGGGGNYNDF 368
Score = 47 (21.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 14/35 (40%), Positives = 14/35 (40%)
Query: 179 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRG 213
FGG G YG YG G G G G S G
Sbjct: 385 FGGGGRNSGPYGGGYGGGSSGSGGGGSGYGGGSGG 419
Score = 47 (21.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 174 NAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
N + G YGG G G + + G G G G G Y Y
Sbjct: 291 NGGGSPGNYGGNRGYGGGGGGGHGYGNQGGGYGGGNSGGGGGGYNNY 337
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 179 FGGYGGPMRTYGRMYGSLDF---DDWGYGMGSGRPSRG 213
FG Y YG M G+ + YG G G S G
Sbjct: 368 FGNYNSQQSNYGPMKGNFGGGGRNSGPYGGGYGGGSSG 405
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 148 (57.2 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 197
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 198 FDDWGYGMGSGRPSRGDWRYRPY 220
+ D GYG + GD Y Y
Sbjct: 353 YYDQGYGNYNSAYG-GDQNYSGY 374
Score = 133 (51.9 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + DP RGFGF
Sbjct: 135 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 131 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
V F + D+V + H++ G+ + A L P
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 231
Score = 47 (21.6 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 366 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 206
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 355 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 392
Score = 44 (20.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 189 RGFGFVLFKDAASVDK 204
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 148 (57.2 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 197
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 198 FDDWGYGMGSGRPSRGDWRYRPY 220
+ D GYG + GD Y Y
Sbjct: 353 YYDQGYGNYNSAYG-GDQNYSGY 374
Score = 133 (51.9 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + DP RGFGF
Sbjct: 135 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 131 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
V F + D+V + H++ G+ + A L P
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 231
Score = 47 (21.6 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 366 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 206
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 355 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 392
Score = 44 (20.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 189 RGFGFVLFKDAASVDK 204
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 148 (57.2 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 197
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 198 FDDWGYGMGSGRPSRGDWRYRPY 220
+ D GYG + GD Y Y
Sbjct: 353 YYDQGYGNYNSAYG-GDQNYSGY 374
Score = 133 (51.9 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + DP RGFGF
Sbjct: 135 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 131 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
V F + D+V + H++ G+ + A L P
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 231
Score = 47 (21.6 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 14/55 (25%), Positives = 18/55 (32%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
G QN+ + GY YG+ Y YG S Y+PY
Sbjct: 366 GGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 206
D + N + + GYGG Y Y ++ ++GYG G
Sbjct: 355 DQGYGNYNSAYGGDQNYSGYGG----YD--YTGYNYGNYGYGQG 392
Score = 44 (20.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 189 RGFGFVLFKDAASVDK 204
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 100 (40.3 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 48 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 107
Query: 133 F 133
F
Sbjct: 108 F 108
Score = 60 (26.2 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 2 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 39
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 146 (56.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 190 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 245
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 246 WNQGYGNYGYNSQGYGGYGGY 266
Score = 144 (55.7 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 44/152 (28%), Positives = 72/152 (47%)
Query: 43 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLR 102
GG GA A +AA+ G+ + G+ ++ + GK +F+G L + T +DL+
Sbjct: 7 GGDGAAAAATAAASGGTEGGSA---ESEGAKIDASKNEEDEGK-MFIGGLSWDTTKKDLK 62
Query: 103 RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATP 161
YFS+FG ++D + DP RGFGFV F E D+V ++ H++ G+ + A
Sbjct: 63 DYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKA 122
Query: 162 LDDAGPSQNFMMNAA----------ETFGGYG 183
+ P + + E FGG+G
Sbjct: 123 MKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 154
Score = 41 (19.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 86 RGFGFVLFKESESVDKVMDQKE 107
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 133 (51.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+ +G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A V
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AV 66
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 67 CARPHKVDGRVVEPKRAVSREDS 89
Score = 132 (51.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 37/114 (32%), Positives = 55/114 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D+ V
Sbjct: 99 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVD 158
Query: 144 RRSHEICGQQVAIDSATP---LDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG 194
++ H I G + A + AG SQ + F G GG G +G
Sbjct: 159 QKYHIINGHNCEVKKALSKQEMQSAG-SQRGRGGGSGNFMGRGGNFGGGGGNFG 211
Score = 53 (23.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRAT---PKEDDFRPV 37
+D +K RG GF+T++ VD A P + D R V
Sbjct: 41 RDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVV 78
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 146 (56.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 42/127 (33%), Positives = 61/127 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMM----NAAETFGGYGGPMRTYGRMY--GSLD 197
R H+I + I A P + Q NA+ GG G R G+ + G +
Sbjct: 175 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNN 234
Query: 198 FDDWGYG 204
+ D GYG
Sbjct: 235 YYDQGYG 241
Score = 129 (50.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + DP RGFGF
Sbjct: 17 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 75
Query: 131 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
V F + ++V + H++ G+ + A L P
Sbjct: 76 VLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEP 113
Score = 45 (20.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/58 (24%), Positives = 19/58 (32%)
Query: 163 DDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
+ A Q++ + GY P YG Y YG S Y+PY
Sbjct: 244 NSAYSDQSYSGYGGYDYSGYNYPNYGYGPGYTDYSGQQSTYGKASRGGGNHQNNYQPY 301
Score = 40 (19.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A V++
Sbjct: 71 RGFGFVLFKDAASVEK 86
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 148 (57.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 29 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 88
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 197
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 89 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 148
Query: 198 FDDWGYGMGSGRPSRGDWRYRPY 220
+ D GYG + GD Y Y
Sbjct: 149 YYDQGYGNYNSAYG-GDQNYSGY 170
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF + D++ +
Sbjct: 109 KKIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQ 168
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYG 204
+ H I G + A + S FGG GG +G +G + +GYG
Sbjct: 169 KYHTINGHNYEVKKAVSKQEM-QSAGSQRGRGGNFGGGGG---NFG--HGG---NGYGYG 219
Query: 205 MGSG 208
G G
Sbjct: 220 DGGG 223
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA+ D+V +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 145 RSHEICGQQVAIDSATP 161
HE+ + + A P
Sbjct: 78 PHHELDSKTIDPKVAFP 94
Score = 76 (31.8 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRI 111
KKIFVG L ED+++YF +FG++
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKV 132
Score = 59 (25.8 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K RG GF+TFA VD+
Sbjct: 50 RDPTTKRSRGFGFVTFADPASVDK 73
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/133 (36%), Positives = 64/133 (48%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L + L +FS FG I +V V KD + RGFGF+TF E +D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 145 RSHE-ICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 198
+ E + G+Q+ +D A G S A FGG G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGSRGGA--FGGRG---RSYSRGGGDQGYGSGRY 115
Query: 199 DD--WGYGMGSGR 209
D GYG G GR
Sbjct: 116 DSRPGGYGYGYGR 128
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 146 (56.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+F+G L + T E LR +F ++G + D V +DP RGFGFVT+A EEV A ++
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AMN 66
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETFGGYGGP---MRTYGRMYGSLDFD 199
R H++ G+ V A +D+ P + + + F G +R Y YG ++
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSRRPGAH--LTVKKIFVGEDTEEHHLRDYFEQYGKIEVI 124
Query: 200 DWGYGMGSGRPSRG 213
+ GSG+ RG
Sbjct: 125 EIMTDRGSGK-KRG 137
Score = 113 (44.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 39/125 (31%), Positives = 58/125 (46%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E S+R G KKIFVG +E LR YF ++G+I + + D RGF FVT
Sbjct: 86 EDSRRPGAHLTVKKIFVGEDTEE---HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 142
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDD-AGPSQNFMMNAAETFGGYGGPMRTYG 190
F + D+ V ++ H + G + A + A S + + ++ GYGG +
Sbjct: 143 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGQSGRGYGGSSSSSS 202
Query: 191 RMYGS 195
YGS
Sbjct: 203 --YGS 205
Score = 60 (26.2 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 40 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 77
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 138 (53.6 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 34/109 (31%), Positives = 54/109 (49%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E D+V +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
+ H++ G+ + A + P + + E FGG+G
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 110
Score = 136 (52.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 44/137 (32%), Positives = 61/137 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 146 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 194
Query: 204 GMGSGRPSRGDWRYRPY 220
G S R + Y+PY
Sbjct: 195 GKVSRRGGHQN-SYKPY 210
Score = 41 (19.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 42 RGFGFVLFKESESVDKVMDQKE 63
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 43/126 (34%), Positives = 59/126 (46%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L E T E L + FS++G++ +V V KD + RGFGFVTF E+ ++
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A G S N GG G + G D GY
Sbjct: 67 MNGKSVDGRQIRVDQA------GKSSNDRRGGYR--GGSSGGRGFFRGGRGRGGGGDRGY 118
Query: 204 GMGSGR 209
G GS R
Sbjct: 119 G-GSSR 123
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 48/133 (36%), Positives = 61/133 (45%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR- 144
K+FVG L + L +FS FG I +V V KD + RGFGF+TF A V R
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 198
+ G+Q+ +D A G S A FG +G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGAHGRG-RSYSRGGGDQGYGSGRY 117
Query: 199 DD--WGYGMGSGR 209
D GYG G GR
Sbjct: 118 DSRPGGYGYGYGR 130
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 142 (55.0 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 54/151 (35%), Positives = 69/151 (45%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTF 133
GR E+ ++ KKIFVG L + +DL +FS+FG I V D K TG RGFGFV F
Sbjct: 90 GRPEALAKV-KKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITD-KDTGKKRGFGFVHF 147
Query: 134 AEEVVADR-VSRRSHEICGQQVAIDSATPLDDA------------GPSQNFMMNAAETFG 180
+ AD+ V + H I G +V + A + G + N G
Sbjct: 148 EDNDSADKAVVLKFHMINGHKVEVKKALTKQEIQAAGGARGGRGRGGGRGMGRNQNGFGG 207
Query: 181 GYGGPMRTYGRMYGS-LDFDDWGYG--MGSG 208
G GG YG YG +D GYG GSG
Sbjct: 208 GRGGGYGGYGGGYGGGYGGNDGGYGGSYGSG 238
Score = 133 (51.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSR 144
K+FVG L + T + LR YF +FG + D V ++ + R FGFVT++ AD ++
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 145 RSHEICGQQVAIDSATPLDDAG 166
R H + G+ V + A +DAG
Sbjct: 69 RPHVVDGKNVEVKRAVAREDAG 90
Score = 58 (25.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDW---GYGMGSGRPSRG 213
GGYGG YG YGS + GYG G G G
Sbjct: 222 GGYGGNDGGYGGSYGSGGYGGGYGGGYGGGYGEQMGG 258
Score = 58 (25.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMG---SGR-PSRGDWRY 217
GGYG M YG G D+ D+G G G SG P +G Y
Sbjct: 250 GGYGEQMGGYG---GGNDYSDFGSGYGQQSSGYGPMKGGNTY 288
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 145 (56.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 10 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 68
Query: 143 SRRSHEICGQQVAIDSATPLDDA 165
+ R H++ G+ V A ++D+
Sbjct: 69 NARPHKVDGRVVEPKRAVSIEDS 91
Score = 116 (45.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 38/127 (29%), Positives = 57/127 (44%)
Query: 78 ESSQRIGK----KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF 133
E SQR G KIFVG + ++ LR YF ++G+ + + D RGF FVTF
Sbjct: 89 EDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTF 148
Query: 134 AEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM 192
+ D+ V ++ H + G + A PS+ M +A+ + G G G
Sbjct: 149 DDRDSVDKIVIQKYHTVNGHNCEVRKA-------PSKQEMASASSSQRGRSGS----GNC 197
Query: 193 YGSLDFD 199
Y +D D
Sbjct: 198 YNGIDND 204
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 146 (56.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/138 (30%), Positives = 61/138 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+KIFVG + ++ +LR YF ++G+I + V +D + RGF FVTF D+V +
Sbjct: 128 EKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQ 187
Query: 145 RSHEICGQQVAI------DSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 198
+ H + G + + + G S NFM FGG GG G GS
Sbjct: 188 KYHTVNGHNCEVKEQEMPSAGSQRGHGGGSGNFMGRGGN-FGGRGGYGGGGGGSRGSYGG 246
Query: 199 DDWGYGMGSGRPSRGDWR 216
D G+ G G R
Sbjct: 247 GDGGFNGFGGDAGHGGRR 264
Score = 128 (50.1 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 39/121 (32%), Positives = 60/121 (49%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T LR +F ++G + D V +DP+R RGF FVT++ EEV A
Sbjct: 37 RKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMC 96
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETFGGYGGP-----MRTYGRMYGSL 196
+R H++ G V A +D+ P + M+ GG +R Y YG +
Sbjct: 97 AR-PHKVVGCVVEPKRAVSREDSIIPGAHLMVEKIFV-GGIKEDTEEYNLRDYFEKYGKI 154
Query: 197 D 197
+
Sbjct: 155 E 155
Score = 37 (18.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 3 KDQGSKAHRGIGFITFA 19
+D K RG F+T++
Sbjct: 70 RDPQRKCSRGFSFVTYS 86
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 146 (56.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 143 (55.4 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 74 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF 133
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 134 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 182
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 183 G 183
G
Sbjct: 206 G 206
Score = 41 (19.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 138 RGFGFVLFKESESVDKVMDQKE 159
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 146 (56.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 143 (55.4 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 74 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF 133
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 134 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 182
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 183 G 183
G
Sbjct: 206 G 206
Score = 41 (19.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 138 RGFGFVLFKESESVDKVMDQKE 159
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 146 (56.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 143 (55.4 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 74 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF 133
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 134 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 182
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 183 G 183
G
Sbjct: 206 G 206
Score = 41 (19.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 138 RGFGFVLFKESESVDKVMDQKE 159
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 146 (56.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/141 (29%), Positives = 62/141 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMN---AAETFGGYGGPMRTYGRMYGSLDFDD 200
++ H + + I A + Q + A G GGP + + + Y +
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY---- 297
Query: 201 WGYGMGS-GRPSRGDWRYRPY 220
W G G+ G S+G Y Y
Sbjct: 298 WNQGYGNYGYNSQGYGGYGGY 318
Score = 142 (55.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 138
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 139 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 41 (19.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 138 RGFGFVLFKESESVDKVMDQKE 159
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 137 (53.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 46/147 (31%), Positives = 68/147 (46%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIF G + ++ LR YF G+I + + DP RGF FVT
Sbjct: 89 EGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVT 148
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 149 FDDHDSVDKTVIQKYHTVNGHNREVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 202
Query: 192 MYGSLDFDDWGYG-MGSGRPSRGDWRY 217
G +++G+G GSG SRG RY
Sbjct: 203 GGGFGGNENFGHGGNGSGG-SRGGGRY 228
Score = 51 (23.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
D +K RG F+T+A+ VD A P + D R V
Sbjct: 44 DPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVV 80
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 146 (56.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 42/127 (33%), Positives = 61/127 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMM----NAAETFGGYGGPMRTYGRMY--GSLD 197
R H+I + I A P + Q NA+ GG G R G+ + G +
Sbjct: 211 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNN 270
Query: 198 FDDWGYG 204
+ D GYG
Sbjct: 271 YYDQGYG 277
Score = 129 (50.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 71 GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 130
GS ++ Q GK +F+G L + + +DL Y SRFG ++D + DP RGFGF
Sbjct: 53 GSKINASKNQQDDGK-MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 111
Query: 131 VTFAEEVVADRVSR-RSHEICGQQVAIDSATPLDDAGP 167
V F + ++V + H++ G+ + A L P
Sbjct: 112 VLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEP 149
Score = 46 (21.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 177 ETFGGYGGPMRTYGRMYGSLDFDDWGYGMG 206
+++ GYGG Y Y ++ ++GYG G
Sbjct: 286 QSYSGYGG----YD--YSGYNYPNYGYGPG 309
Score = 40 (19.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A V++
Sbjct: 107 RGFGFVLFKDAASVEK 122
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 43/129 (33%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G GS SR
Sbjct: 124 G-GSRFESR 131
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 43/129 (33%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G GS SR
Sbjct: 124 G-GSRFESR 131
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E D+V +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 145 RSHEICGQQV 154
+ H++ G+ +
Sbjct: 139 KEHKLNGKVI 148
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQV 154
+ R H++ G+ V
Sbjct: 73 NARPHKVDGRVV 84
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 40/123 (32%), Positives = 63/123 (51%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R+ GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RSRGRGF-SRGGGDRGY 123
Query: 204 GMG 206
G G
Sbjct: 124 GGG 126
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 40/123 (32%), Positives = 63/123 (51%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R+ GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RSRGRGF-SRGGGDRGY 123
Query: 204 GMG 206
G G
Sbjct: 124 GGG 126
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 40/123 (32%), Positives = 63/123 (51%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R+ GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RSRGRGF-SRGGGDRGY 123
Query: 204 GMG 206
G G
Sbjct: 124 GGG 126
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 137 (53.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 48/133 (36%), Positives = 64/133 (48%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L + L +FS FG I +V V KD + RGFGF+TF E +D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 145 RSHE-ICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 198
+ E + G+Q+ +D A G S A FG +G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGAHGRG-RSYSRGGGDQGYGSGRY 117
Query: 199 DD--WGYGMGSGR 209
D GYG G GR
Sbjct: 118 DSRPGGYGYGYGR 130
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 144 (55.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
K+FVG +P + T E+ R +F++FGR+LD + D K TG RGFGFVT+ E +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD-KDTGRPRGFGFVTYENESAVEATMS 306
Query: 145 RSH-EICGQQVAIDSATP 161
+ + I G+ V + ATP
Sbjct: 307 QPYITIHGKPVEVKRATP 324
Score = 134 (52.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+F+G L E T + LR YF +FG +LD V +D RGFGF+TF + V +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 146 SHEICGQQVAIDSATPLDD 164
H + G+ + A P ++
Sbjct: 224 EHHLDGKIIDPKRAIPREE 242
Score = 48 (22.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKE 31
+D + RG GF+TF + V+ KE
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 150 (57.9 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 45/134 (33%), Positives = 70/134 (52%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + + V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPS--QNFMMNAAE-TFGGYGGPMRTYGRMYGSLDFD 199
+ R H++ G+ V + A +D+ + F+ E T Y +R Y YG ++
Sbjct: 73 NARPHKVDGRVVEPERAVSREDSHSLTVKIFVGGIKEDTEEHY---LRDYSEQYGKIEVI 129
Query: 200 DWGYGMGSGRPSRG 213
+ GSG+ RG
Sbjct: 130 EIMTDRGSGK-KRG 142
Score = 113 (44.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 36/131 (27%), Positives = 56/131 (42%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 137
E S + KIFVG + ++ LR Y ++G+I + + D RGF FVTF +
Sbjct: 93 EDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYD 152
Query: 138 VADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD 197
D++ R + + A S+ M +A+ + G G YGR S
Sbjct: 153 SVDKIVIRKYHTVNDHNCVRKAL-------SKQEMASASSSQRGRSGSGNGYGR---SSS 202
Query: 198 FDDWGYGMGSG 208
+D + G G G
Sbjct: 203 YDSYNNGGGGG 213
Score = 60 (26.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 148 (57.2 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 91
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 92 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 149
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 150 IEVIEIMTDRGSGK-KRG 166
Score = 123 (48.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 37/116 (31%), Positives = 53/116 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 112 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 171
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDD---AGPSQNFMMNAAETFGGYGG 184
F + D+ V ++ H + G + A + A SQ + GG GG
Sbjct: 172 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGG 227
Score = 60 (26.2 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 66 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 103
>UNIPROTKB|I3LP80 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
EMBL:CU627987 Ensembl:ENSSSCT00000027195 OMA:NVVEMEM Uniprot:I3LP80
Length = 231
Score = 148 (57.2 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 143
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 25 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 84
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNA-AETFGGYGGPM---RTYGRMY--GSLD 197
R H+I + I A P + Q GG GG R G+ + G +
Sbjct: 85 SRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 144
Query: 198 FDDWGYGMGSGRPSRGDWRYRPY 220
+ D GYG + GD Y Y
Sbjct: 145 YYDQGYGNYNSAYG-GDQNYSGY 166
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 136 (52.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 44/137 (32%), Positives = 61/137 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 34 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 94 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 142
Query: 204 GMGSGRPSRGDWRYRPY 220
G S R + Y+PY
Sbjct: 143 GKVSRRGGHQN-SYKPY 158
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 136 (52.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 144
K+F+G L + T E L+ YF +FG + + V +DP RGFGFVT+ ++ D+V ++
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKVLAQ 82
Query: 145 RSHEICGQQVA 155
HE+ + V+
Sbjct: 83 NRHELDSKTVS 93
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 150 (57.9 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 37/108 (34%), Positives = 61/108 (56%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TAE+L+++F ++G ++DV++PK P R F FVTFA++ VA
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-P----FRAFAFVTFADDKVAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
+CG+ + I + + +A P N E G +GG +GR
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGGKS-PFGR 284
Score = 132 (51.5 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQ 152
+V + H I G+
Sbjct: 159 VKVMSQRHMIDGR 171
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 152 (58.6 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+F+G L T + L+ +F ++G I+DV V KDPK RGFGF+T+++ + D
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 145 -RSHEICGQQVAIDSATP 161
R H+I G+ V A P
Sbjct: 84 ARPHKIDGRTVEPKRAVP 101
Score = 128 (50.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 45/135 (33%), Positives = 62/135 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVS 143
KK+FVG L + E LR YF FG+I+ V + D K TG RGF F+ F + D++
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSD-KDTGKKRGFAFIEFDDYDPVDKII 173
Query: 144 -RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 202
+++H I + + + A D M+ GG GGP R GR G D G
Sbjct: 174 LQKTHSIKNKTLDVKKAIAKQD--------MDRQGGGGGRGGP-RAGGRG-GQGDRGQGG 223
Query: 203 YGMGSGRPSRG--DW 215
G G G +W
Sbjct: 224 GGWGGQNRQNGGGNW 238
Score = 63 (27.2 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRAT---PKEDDFRPV 37
KD +K RG GFIT++ + ++D A P + D R V
Sbjct: 57 KDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTV 94
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 135 (52.6 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T + LR +F ++G++ D V +DP RGFGFVT++ D ++
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 144 RRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDS 94
Score = 130 (50.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 57/192 (29%), Positives = 85/192 (44%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG-----K 85
P + S G +G + Y S + AA+ A P D P R E S + G K
Sbjct: 48 PANKRSRG-FG-FVTYSSVSEVDAAMTARPHKVDGRVVEPKRAVSR-EDSNKPGAHLTVK 104
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADR-VS 143
KIFVG + ++ +R YF +G+I + + ++ + TG RGF FVTF + D+ V+
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEE-RSTGKKRGFCFVTFDDHDTVDKIVA 163
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQN--FMMNAAETFGGYGGPMRT--YGRMYGSLD-F 198
++ H I + A P + S N + F G GG YG G D +
Sbjct: 164 QKYHTINSHNCEVRKALPKQEMQSSSNQRYRGGGGGNFTGRGGNFGRGGYGGGRGGGDGY 223
Query: 199 DDWG--YGMGSG 208
+ +G YG G G
Sbjct: 224 NGFGGNYGGGPG 235
Score = 118 (46.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 41/140 (29%), Positives = 61/140 (43%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADR-V 142
KKIFVG + ++ +R YF +G+I + + ++ + TG RGF FVTF + D+ V
Sbjct: 104 KKIFVGGIKEDTEEYHIREYFECYGKIETIDIMEE-RSTGKKRGFCFVTFDDHDTVDKIV 162
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQN--FMMNAAETF---------GGYGGPMRT--- 188
+++ H I + A P + S N + F GGYGG
Sbjct: 163 AQKYHTINSHNCEVRKALPKQEMQSSSNQRYRGGGGGNFTGRGGNFGRGGYGGGRGGGDG 222
Query: 189 YGRMYGSLDFDDWGYGMGSG 208
Y G+ GYG G G
Sbjct: 223 YNGFGGNYGGGPGGYGGGRG 242
Score = 59 (25.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++S VD A
Sbjct: 46 RDPANKRSRGFGFVTYSSVSEVDAA 70
Score = 52 (23.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 179 FGGYGGPMRTYGRMYG-------SLDFDDWGYGMGSG 208
FG YGG +G M G S + GYG G G
Sbjct: 265 FGNYGGQQSNFGPMKGNNFGGRNSGPYGGGGYGSGGG 301
Score = 40 (19.1 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 180 GGYGGPMRTYGRMYG 194
GGYGG YG G
Sbjct: 235 GGYGGGRGGYGNFGG 249
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 141 (54.7 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 42/141 (29%), Positives = 67/141 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF +G + + +P + K RGF F+TF EE ++
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-G-GYGGPMRTYGRMYGSLDFDDW 201
++ H I + + A + Q + T G G GGP + + + YG+ + +
Sbjct: 199 KKYHNIGLSKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRGRGGPNQNWNQGYGN--YWNQ 256
Query: 202 GYG-MGS-GRPSRGDWRYRPY 220
GYG G+ G ++G Y Y
Sbjct: 257 GYGNYGNYGYNNQGYGGYGGY 277
Score = 134 (52.2 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L + T +DL+ YF++FG ++D + DP RGFGFV F E E V +++
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 145 RSHEICGQQV 154
+ H++ G+ +
Sbjct: 115 KEHKLNGKVI 124
Score = 43 (20.2 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRA-TPKE 31
RG GF+ F A V++ T KE
Sbjct: 95 RGFGFVLFKEAESVEKVITQKE 116
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 137 (53.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 46/139 (33%), Positives = 64/139 (46%)
Query: 75 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTF 133
G+ E+ ++ KKIF+G L + + LR FS+FG + V D K TG RGFGFV F
Sbjct: 92 GKPEALAKV-KKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITD-KETGKKRGFGFVYF 149
Query: 134 AEEVVADR-VSRRSHEICGQQVAIDSATPLDD--AGPSQNFMMNAAETFGGYGGPMRTYG 190
+ AD+ V + H I G +V + A + A S+ G G P YG
Sbjct: 150 EDNDSADKAVVLKFHMINGHKVEVKKALTKQEMQAAGSRGGGRGGRGGGRGMGRPQNGYG 209
Query: 191 RMYGSL-DFDDWGYGMGSG 208
G ++ GYG G
Sbjct: 210 GRGGGYGNYGGGGYGGNDG 228
Score = 126 (49.4 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSR 144
K+FVG L + T + LR +F ++G++ D V ++ + R FGFVT++ AD +S
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 145 RSHEICGQQVAIDSATPLDDAG 166
R H + G V + A +DAG
Sbjct: 71 RPHILDGNNVELKRAVAREDAG 92
Score = 63 (27.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGM-GSGR-PSRGDWRYR---PY 220
GGYG M YG G DF GYG SG P +G++ R PY
Sbjct: 243 GGYGDQMEGYGGGNGYNDFGS-GYGQQSSGYGPMKGNYSGRSNAPY 287
Score = 39 (18.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
++Q K R GF+T++S D A
Sbjct: 43 QNQQLKRSRCFGFVTYSSPDEADSA 67
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 202 GYGMGSGRPSRG 213
G G G GRP G
Sbjct: 196 GGGRGMGRPQNG 207
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 148 (57.2 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 47/136 (34%), Positives = 60/136 (44%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR- 144
K+FVG L L +FS FG I +V V KD + RGFGF+TF A R
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGY----GGPMRTYGRMYGSLDFD 199
+ G+Q+ +D A G S A FGGY G P + YGS +D
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGSRGGA--FGGYERGRGYPRGGGDQGYGSGRYD 118
Query: 200 D------WGYGMGSGR 209
+ +GYG G GR
Sbjct: 119 NRPGAYGFGYGYGYGR 134
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G G+ SR
Sbjct: 124 G-GNRFESR 131
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G G+ SR
Sbjct: 124 G-GNRFESR 131
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G G+ SR
Sbjct: 124 G-GNRFESR 131
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + ++ G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSSGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G GS SR
Sbjct: 124 G-GSRFESR 131
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 134 (52.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 42/129 (32%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G G+ SR
Sbjct: 124 G-GNRFESR 131
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 146 (56.5 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 44/136 (32%), Positives = 66/136 (48%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 65
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 197
+ R H++ G+ V A +D+ ++ GG +R Y YG +
Sbjct: 66 NARPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTE 125
Query: 198 FDDWGYGMGSGRPSRG 213
+ GSG+ RG
Sbjct: 126 VIEIVTDRGSGK-KRG 140
Score = 123 (48.4 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 40/130 (30%), Positives = 59/130 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ LR YF ++G+ + + D RGF FVTF + D+ V
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVI 157
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + G + A P + G S + GG+GG +GR G +F G
Sbjct: 158 QKYHTVNGHNCEVRKA-PSNQRGRSGSGNFGGGRG-GGFGGN-DNFGR--GG-NFSGRG- 210
Query: 204 GMGSGRPSRG 213
G G R G
Sbjct: 211 GFGGSRGGGG 220
Score = 59 (25.8 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T+A+ VD A
Sbjct: 40 RDPNTKRSRGFGFVTYATVEEVDAA 64
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 150 (57.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 37/119 (31%), Positives = 57/119 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E E LR Y+ ++G++ D V +DP RGFGFV F+ D ++
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 197
R H I G+ VA P +++G + GG +R Y YG++D
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTID 139
Score = 108 (43.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KK+FVG + ++ T LR YF R+G I + + + R FGFVTF + D+ V
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRK--TAFGFVTFDDHDPVDKIVL 169
Query: 144 RRSHEICGQQVAIDSA 159
++ H I G ++ A
Sbjct: 170 QKYHTINGHHAQLEKA 185
Score = 57 (25.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D S+ RG GF+ F+S VD A
Sbjct: 54 RDPSSQRSRGFGFVIFSSVAEVDAA 78
Score = 49 (22.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 175 AAETFGG---YGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
A +FGG YGG G Y +L G+G G G GD+
Sbjct: 256 AGGSFGGCPGYGGGYGDRGAGYSNLSS---GFGDGYGNYGGGDY 296
Score = 36 (17.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYG 204
GY +G YG+ D+G G
Sbjct: 276 GYSNLSSGFGDGYGNYGGGDYGEG 299
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 150 (57.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 37/119 (31%), Positives = 57/119 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E E LR Y+ ++G++ D V +DP RGFGFV F+ D ++
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLD 197
R H I G+ VA P +++G + GG +R Y YG++D
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTID 139
Score = 108 (43.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KK+FVG + ++ T LR YF R+G I + + + R FGFVTF + D+ V
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRK--TAFGFVTFDDHDPVDKIVL 169
Query: 144 RRSHEICGQQVAIDSA 159
++ H I G ++ A
Sbjct: 170 QKYHTINGHHAQLEKA 185
Score = 57 (25.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D S+ RG GF+ F+S VD A
Sbjct: 54 RDPSSQRSRGFGFVIFSSVAEVDAA 78
Score = 49 (22.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 175 AAETFGG---YGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDW 215
A +FGG YGG G Y +L G+G G G GD+
Sbjct: 256 AGGSFGGCPGYGGGYGDRGAGYSNLSS---GFGDGYGNYGGGDY 296
Score = 36 (17.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYG 204
GY +G YG+ D+G G
Sbjct: 276 GYSNLSSGFGDGYGNYGGGDYGEG 299
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 133 (51.9 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRR 145
+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E D+V ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
H++ G+ + A + P + + E FGG+G
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 108
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 149 (57.5 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 48/127 (37%), Positives = 60/127 (47%)
Query: 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRV 142
G +IFVG L E T DL R FSRFG ILD + + + TG RGFGF+TFA+ D
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLE-RDTGRSRGFGFITFADRRAMDES 64
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWG 202
R H G+ D ++ A P + E+ G GG Y + G F G
Sbjct: 65 IREMH---GRDFG-DRVISVNRAEPKLG--RDDGESHGSRGGRDSGYS-IAGKGSFG--G 115
Query: 203 YGMGSGR 209
G G GR
Sbjct: 116 GGGGGGR 122
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 150 (57.9 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 51/185 (27%), Positives = 83/185 (44%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDF---RPVG-RMSHGGYGAYNAYISAATRY 58
K++ + RG GF+ FA+ V +A ++ F +PV R + + Y S ++
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKHELYQQPFSM--QF 95
Query: 59 AALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 118
+ G +S+ KKIFVG L T E+ + YF RFGR DV V
Sbjct: 96 LERKVQQMNGGLREMSSNGVTSRT--KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMH 153
Query: 119 DPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLDDAGPSQNFMMNAAE 177
D RGFGFVT+ E + V + + HE+ ++V + A P + + +N
Sbjct: 154 DGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPP 213
Query: 178 TFGGY 182
++ +
Sbjct: 214 SYSSF 218
Score = 142 (55.0 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
K+FVG + +E + E L++YFSR+G +L+ V K+ K TG RGFGFV FA + + R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKE-KVTGKPRGFGFVRFANDCDVVKALR 65
Query: 145 RSHEICGQQVAIDSA 159
+H I G+ V + A
Sbjct: 66 DTHFILGKPVDVRKA 80
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 149 (57.5 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 137
Query: 197 D 197
D
Sbjct: 138 D 138
Score = 134 (52.2 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 55 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 112
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 113 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 172
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 173 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 230
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 231 DGYGSGR-GFGDG-YNGY 246
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 131 (51.2 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 52/154 (33%), Positives = 74/154 (48%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D + +G +GF FVT
Sbjct: 92 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD-RGSGKKGFAFVT 150
Query: 133 FAEEVVADR-VSRRSHEICG-----------QQVAIDSATPLDDAGPSQNFMMNAAETFG 180
F + D+ V ++ H + G Q++A S+T D +G S NF FG
Sbjct: 151 FDDHDSVDKIVIQKYHPVNGHSCEVRKALSKQEMASASSTQRDLSG-SGNFGGGRGGGFG 209
Query: 181 GY----GGPMRTY--GRMYGSLDFDDWGYGMGSG 208
G GG R + G +G GYG GSG
Sbjct: 210 GNDNFGGGRRRNFSGGGGFGGSQ-GGGGYG-GSG 241
Score = 117 (46.2 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 41/133 (30%), Positives = 63/133 (47%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+F+G L E T E LR +F ++G D V +DP RG GF+ +A EEV A ++
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDA-AMN 73
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H + G+ V A +D+ P + + + F GG +R Y YG +
Sbjct: 74 ARPH-VDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130
Query: 197 DFDDWGYGMGSGR 209
+ + GSG+
Sbjct: 131 EVIEIMTDRGSGK 143
Score = 55 (24.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG+GF+ +A+ VD A
Sbjct: 47 RDPNTKRSRGVGFLMYATVEEVDAA 71
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 136 (52.9 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 42/152 (27%), Positives = 65/152 (42%)
Query: 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 135
R ++ + KK+FVG L + E ++ Y FG I ++ +P D K RGF F+T+ +
Sbjct: 85 RAKALKEPPKKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTD 144
Query: 136 EV-VADRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYG 194
E V + R H+I + I A P + Q G G R +G+ G
Sbjct: 145 EKPVKKLLENRYHQIGSGKCEIKVAEPKEIYRQQQQQQKGGRSAAAGERGGSRGHGQGQG 204
Query: 195 ---SLDFDDWGYGMGSGRPSR---GDWRYRPY 220
+ F+ Y G+G + GD Y Y
Sbjct: 205 QNWNQRFNHC-YDQGNGNYNSAYGGDQNYSDY 235
Score = 44 (20.5 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 RGIGFITFASAVVVDR 26
RG GF+ F A VD+
Sbjct: 52 RGFGFVLFKEAASVDK 67
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 148 (57.2 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 149 (57.5 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 126
Query: 197 D 197
D
Sbjct: 127 D 127
Score = 134 (52.2 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 44 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 101
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 162 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 219
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 220 DGYGSGR-GFGDG-YNGY 235
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 148 (57.2 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 148 (57.2 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 125 (49.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 45/143 (31%), Positives = 64/143 (44%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDD---AGPSQNFMMNAAETFGGYGGPMR- 187
F + D+ V ++ H + G + A + A SQ + GG GG
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGG 212
Query: 188 --TYGRMYGSLDFDDWGYGMGSG 208
+GR G +F G G+G G
Sbjct: 213 NDNFGR--GG-NFS--GRGIGDG 230
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 150 (57.9 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 42/135 (31%), Positives = 63/135 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KK+FVG + ++ E LR YF +FG+I +V + + RGF F+TF + DR V
Sbjct: 129 KKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVI 188
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMR-TYGRMYGSLDFDDWG 202
++ H + G + A ++ MN+ GG GG +GR G +G
Sbjct: 189 QKYHTVNGHNCEVRKALSREEMN---RVSMNSRGGRGGGGGSGGGNFGRGGGGGGGGGYG 245
Query: 203 --YGMGSGRPSRGDW 215
YG G GR G +
Sbjct: 246 GGYGGGGGRGGGGGY 260
Score = 135 (52.6 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 62/217 (28%), Positives = 89/217 (41%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 62
+D +K RG GF+T++S VD A D RP H G A +R +
Sbjct: 71 RDPNTKRSRGFGFVTYSSVGEVDAAM----DARP-----HKVDGRAVEPKRAVSREDS-- 119
Query: 63 APTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR 122
PG+ S+ KK+FVG + ++ E LR YF +FG+I +V + +
Sbjct: 120 -----SKPGA-----HSTV---KKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNS 166
Query: 123 TGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGP-SQNFMM------- 173
RGF F+TF + DR V ++ H + G + A ++ S N
Sbjct: 167 DKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREEMNRVSMNSRGGRGGGGG 226
Query: 174 NAAETFG--GYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
+ FG G GG YG YG G G G G
Sbjct: 227 SGGGNFGRGGGGGGGGGYGGGYGGGGGRGGGGGYGGG 263
Score = 133 (51.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT++ D +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 144 RRSHEICGQQVAIDSATPLDDA 165
R H++ G+ V A +D+
Sbjct: 98 ARPHKVDGRAVEPKRAVSREDS 119
Score = 51 (23.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 180 GGYGGPMRTYG--RMYGSLDFDDWGYGMGSGRPSRGDWRYRPY 220
GGYGG YG R YGS G G G+ G Y Y
Sbjct: 274 GGYGGGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNY 316
Score = 51 (23.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 168 SQNF-MMNAAETFGGYGGPMRT----YGRMYGSLDFDDWGYGMGSG 208
S N+ M GG GG R+ YG YG GYG GSG
Sbjct: 351 SSNYGPMKGGNYGGGGGGGGRSGGGPYGGGYGGGSGGGGGYGGGSG 396
Score = 49 (22.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
GGYGG G G GYG GSG
Sbjct: 379 GGYGGGSGGGGGYGGGSGGGGGGYGGGSG 407
Score = 46 (21.3 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 179 FGGYGGPMRTYGRMYGSLDFD-DWGYGMGSGRPSRGDW 215
+ GYGG YG G ++ + GYG G G G +
Sbjct: 266 YNGYGGGNGGYGG--GGPNYGGNRGYGSGGGGGGGGGY 301
Score = 44 (20.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRM---YGSLDFDDWGYGMGSG 208
G N+ N GG GG YG YG +D++ G G
Sbjct: 278 GGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNYNNNGGGG 323
Score = 39 (18.8 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 179 FGGYGGPMRTYGRM-------YGSLDFDDWGYGMGSGRPSRG 213
FGG GG +G YG + ++G G G G S G
Sbjct: 334 FGG-GGDYNDFGNYNNQSSSNYGPMKGGNYGGGGGGGGRSGG 374
Score = 37 (18.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 180 GGYGGPMRTYGRMYGSLDFDDWG 202
GG GG G G D++D+G
Sbjct: 322 GGGGGGNFGGGNFGGGGDYNDFG 344
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 132 (51.5 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 46/132 (34%), Positives = 59/132 (44%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR- 144
K+FVG L + L +FS FG I +V V KD + RGFGF+TF A R
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG-GPMRTYGRM-YGSLDFDD- 200
+ G+Q+ +D A G S A FG G G R G YG+ +D
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGARGRGYSRGGGDQGYGNGRYDSR 118
Query: 201 ---WGYGMGSGR 209
+GYG G GR
Sbjct: 119 PGGYGYGYGYGR 130
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 132 (51.5 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 42/130 (32%), Positives = 59/130 (45%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K+FVG L + L +FS FG I +V V KD + +GFGF+TF A R
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 146 SH--EICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDD--- 200
++ + G+Q+ +D A G S A G+G + YGS +D
Sbjct: 67 TNGESLDGRQIHVDHA------GKSARGTRGGAFEAHGHGYSRGRGHQSYGSSRYDSLPG 120
Query: 201 -WGYGMGSGR 209
+GYG G GR
Sbjct: 121 GYGYGYGYGR 130
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 132 (51.5 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 43/136 (31%), Positives = 62/136 (45%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVADRVSR 144
+ FVG L EDL+R FS+FG ++D + D + RGFGFVTF +E + D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 145 RS-HEICGQQVAIDSATPLDDAGPSQNFMMNA----AETFGGY-GGPMRTY-GRMYGSLD 197
+ E+ G+ + ++ A G + + GGY GG Y G G +
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYE 126
Query: 198 FDDWGYGMGSGRPSRG 213
GYG G G RG
Sbjct: 127 RRSGGYGSGGGGGGRG 142
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 149 (57.5 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 137
Query: 197 D 197
D
Sbjct: 138 D 138
Score = 134 (52.2 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 55 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 112
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 113 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 172
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 173 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 230
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 231 DGYGSGR-GFGDG-YNGY 246
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 149 (57.5 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 197 D 197
D
Sbjct: 139 D 139
Score = 135 (52.6 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 HHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 149 (57.5 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 197 D 197
D
Sbjct: 139 D 139
Score = 134 (52.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 149 (57.5 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 197 D 197
D
Sbjct: 139 D 139
Score = 134 (52.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 149 (57.5 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 197 D 197
D
Sbjct: 139 D 139
Score = 134 (52.2 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 59/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 149 (57.5 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 138
Query: 197 D 197
D
Sbjct: 139 D 139
Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 58/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D++ ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQK 173
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 231
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 232 DGYGSGR-GFGDG-YNGY 247
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 125 (49.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 46/148 (31%), Positives = 64/148 (43%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSAT---PLDDAGPSQNFMMNAAETFGGYGGPMR- 187
F + D+ V ++ H + G + A + A SQ + GG GG
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQRGRSGSGNFGGGRGGGFGG 212
Query: 188 --TYGRMYGSLDFDDWGYGMGSGRPSRG 213
+GR G +F G G G R G
Sbjct: 213 NDNFGR--GG-NFSGRG-GFGGSRGGGG 236
Score = 60 (26.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 147 (56.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/136 (32%), Positives = 68/136 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A D +
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD--AA 71
Query: 145 RSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 197
RSH++ G+ V A +D+ P + + + F GG +R Y + YG ++
Sbjct: 72 RSHKVDGRVVEPKRAVSREDSQRPGAH--LTVRKIFVGGIKEDTEEHHLRDYFKQYGKIE 129
Query: 198 FDDWGYGMGSGRPSRG 213
+ GSG+ RG
Sbjct: 130 VIEIMTDRGSGK-KRG 144
Score = 100 (40.3 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 38/137 (27%), Positives = 59/137 (43%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G +KIFVG + ++ LR YF ++G+I + + D RGF VT
Sbjct: 90 EDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVT 149
Query: 133 FAEEVVADRVSRRSHEICGQQVAIDSATPLDD-AGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + V ++ + + G + A + A S + + + FGG G G
Sbjct: 150 FDDHDKDKIVIQKYYIVNGHNCEVRKALSKQEMASASSSRGRSGSGNFGGGRG-----GG 204
Query: 192 MYGSLDFDDWGYGMGSG 208
G+ +F G G G
Sbjct: 205 FGGNDNFGHGGNFSGQG 221
Score = 63 (27.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A + D R V
Sbjct: 47 RDPNTKHSRGFGFVTYATVKEVDAARSHKVDGRVV 81
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 143 (55.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 74 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF 133
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 134 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 182
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 183 G 183
G
Sbjct: 206 G 206
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 148 (57.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 146 (56.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 44/137 (32%), Positives = 68/137 (49%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVS 143
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A E V ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H++ G+ V A +D+ P + + + F GG +R Y YG +
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 197 DFDDWGYGMGSGRPSRG 213
+ + GSG+ RG
Sbjct: 132 EVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVV 84
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 131 (51.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 50/144 (34%), Positives = 67/144 (46%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L + L +F FG I +V V KD + RGFGF+TF + E +D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 145 RSHE-ICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-----YGSLDF 198
+ E + G+Q+ +D A G S A FG +G R+Y R YGS +
Sbjct: 67 MNGESLDGRQIRVDHA------GKSARGTRGGA--FGAHGRG-RSYSRGGGDQGYGSGRY 117
Query: 199 DD--WGYGMGSGRPSRGDWRYRPY 220
D GYG G G G R R Y
Sbjct: 118 DSRPGGYGYGYGY-GYGYGRSRDY 140
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 131 (51.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 82 RIGKKI-FVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG-HRGFGFVTFA-EEVV 138
RIG+++ FV ++P A + +LR +F++FG + VP D K TG HRG G+V F+ EE +
Sbjct: 15 RIGRRVAFVRKIPWTAASSELREHFAQFGHVRKCTVPFD-KETGFHRGMGWVHFSSEEDL 73
Query: 139 ADRVSRRSHEICGQQVAIDSATP 161
+ + + H I G ++ I + P
Sbjct: 74 QNALQQEKHIIDGVKLHIQARRP 96
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 148 (57.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 77 ARPHTIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKI 134
Query: 197 D 197
D
Sbjct: 135 D 135
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 60/198 (30%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 52 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHVTVKK 109
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 110 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 169
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + QN FG +G G +G GS +F
Sbjct: 170 YHTINGHNAEVRKALSRQEMQEVQNSRSGRGGNFG-FGDARGGGGNFGPGPGS-NFRGGA 227
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 228 DGYGSGR-GFGDG-YNGY 243
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 129 (50.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F + G + D V +DP+ RGFGFVT + EEV A +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDA-AM 94
Query: 143 SRRSHEICGQQVAIDSATPLDDA-GPSQNFMM 173
R H++ G+ V A +D+ P + M+
Sbjct: 95 CARPHKVDGRVVEPKRAVSREDSVKPGAHLMV 126
Score = 111 (44.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 41/132 (31%), Positives = 60/132 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+ + + RGF FVTF ++ D+ V
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGKTETIEGRQ--AEWEKRGFAFVTFDDQDTVDKIVV 184
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H I G + A S+ M A G GG GR G+ + GY
Sbjct: 185 QKHHTINGHNCEVKRAL-------SKQEMPCAGSQRGRGGGSSNFMGRG-GNFGGRE-GY 235
Query: 204 GMGSGRPSRGDW 215
G G G SRG +
Sbjct: 236 G-GGGGGSRGSY 246
Score = 58 (25.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 166 GPSQNFM-----MNAAETFGGYGGPMR-TYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
G S NFM E +GG GG R +YG Y D YG G SRG +
Sbjct: 217 GGSSNFMGRGGNFGGREGYGGGGGGSRGSYGGSGDRYHGFGGDGGNYGGGPSYSSRGSY 275
Score = 46 (21.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T + VD A
Sbjct: 69 RDPQTKHSRGFGFVTSSCVEEVDAA 93
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 129 (50.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T + LR +F + G + D V +DP+ RGFGFVT + EEV A +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDA-AM 94
Query: 143 SRRSHEICGQQVAIDSATPLDDA-GPSQNFMM 173
R H++ G+ V A +D+ P + M+
Sbjct: 95 CARPHKVDGRVVEPKRAVSREDSVKPGAHLMV 126
Score = 111 (44.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 41/132 (31%), Positives = 60/132 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR YF ++G+ + + RGF FVTF ++ D+ V
Sbjct: 127 KKIFVGGIKEDTEEYNLRDYFEKYGKTETIEGRQ--AEWEKRGFAFVTFDDQDTVDKIVV 184
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H I G + A S+ M A G GG GR G+ + GY
Sbjct: 185 QKHHTINGHNCEVKRAL-------SKQEMPCAGSQRGRGGGSSNFMGRG-GNFGGRE-GY 235
Query: 204 GMGSGRPSRGDW 215
G G G SRG +
Sbjct: 236 G-GGGGGSRGSY 246
Score = 58 (25.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 166 GPSQNFM-----MNAAETFGGYGGPMR-TYGRM---YGSLDFDDWGYGMGSGRPSRGDW 215
G S NFM E +GG GG R +YG Y D YG G SRG +
Sbjct: 217 GGSSNFMGRGGNFGGREGYGGGGGGSRGSYGGSGDRYHGFGGDGGNYGGGPSYSSRGSY 275
Score = 46 (21.3 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T + VD A
Sbjct: 69 RDPQTKHSRGFGFVTSSCVEEVDAA 93
Score = 36 (17.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 181 GYGGPMRTYGRMYGSLDFD--DWGYGMGSGRPSRGD 214
G GG + G G +D D G G G G GD
Sbjct: 283 GTGGRVGVGGVDVGGVDVGGVDVGGGGGDGDGGDGD 318
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 148 (57.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKV 138
Query: 197 D 197
D
Sbjct: 139 D 139
Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 58/198 (29%), Positives = 84/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 56 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 113
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF +G++ + + D + RGFGF TF + D+ V ++
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQK 173
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFG---GYGGPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +GG +G GS +F
Sbjct: 174 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSHGGG-GNFGPGPGS-NFRGGS 231
Query: 203 YGMGSGRPSRGDWRYRPY 220
YG GSGR GD Y Y
Sbjct: 232 YGYGSGR-GFGDG-YNGY 247
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 131 IEVIEIMTDRGSGK-KRG 147
Score = 126 (49.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 206
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSR 232
Score = 60 (26.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 84
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDW 201
+ G+Q+ +D A D S+ + +A G + G R GR + + +W
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGFSRGECHEW 122
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 41/122 (33%), Positives = 55/122 (45%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR- 144
KIFVG L E L+ F FG+I+D V D + RGFGFVT+ VA+ +
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRM-YGSLDFDDWG 202
++ E+ G+ + + P D G GGYGG Y R +G F G
Sbjct: 97 MQNKELDGRIIGVH---PADSGGGGGG---GGFARRGGYGGGRGGYARGGFGRGGFGGGG 150
Query: 203 YG 204
YG
Sbjct: 151 YG 152
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 148 (57.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 93
Query: 143 SRRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGS 195
+ R H++ G+ V A +D+ P + + + F GG +R Y YG
Sbjct: 94 NARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGK 151
Query: 196 LDFDDWGYGMGSGRPSRG 213
++ + GSG+ RG
Sbjct: 152 IEVIEIMTDRGSGK-KRG 168
Score = 126 (49.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 44/146 (30%), Positives = 66/146 (45%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 114 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 173
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGR 191
F + D+ V ++ H + G + A + + + + + G +GG GR
Sbjct: 174 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS-GNFGG-----GR 227
Query: 192 MYGSLDFDDWGYGMG-SGRPSRGDWR 216
G D++G G SGR G R
Sbjct: 228 GGGFGGNDNFGRGGNFSGRGGFGGSR 253
Score = 60 (26.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 68 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 105
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 133 (51.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 44/137 (32%), Positives = 66/137 (48%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+F+ L E T E LR +F R+G + D V +DP RGFGFVT+ EEV A ++
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDA-AMN 66
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETFGGY------GGPMRTYGRMYGSL 196
R H++ G+ V A +D+ P + + + F G +R Y YG +
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSQRPGAH--LTVKKIFVGSIKEDTEEHHLREYFEQYGKI 124
Query: 197 DFDDWGYGMGSGRPSRG 213
+ + GSG+ RG
Sbjct: 125 EVIEIMTDRGSGQ-KRG 140
Score = 125 (49.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 39/128 (30%), Positives = 56/128 (43%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 86 EDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVT 145
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLDD---AGPSQNFMMNAAE--TFGGYGGPM 186
F + D+ V ++ H + G + A + A SQ + FG Y
Sbjct: 146 FDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNYNDFGNYNNQS 205
Query: 187 RTYGRMYG 194
+G M G
Sbjct: 206 SNFGPMKG 213
Score = 55 (24.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+ + VD A P + D R V
Sbjct: 40 RDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVV 77
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 144 (55.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 42/129 (32%), Positives = 63/129 (48%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAET-FGGYGGPMRTYGRMYGSLDFDDWG 202
+ G+Q+ +D A G + + N E+ GGYGG Y S + D
Sbjct: 67 MNGKSVDGRQIRVDQA-----GGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRS 121
Query: 203 YGMGSGRPS 211
G GS R S
Sbjct: 122 SG-GSYRDS 129
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 129 (50.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 41/120 (34%), Positives = 55/120 (45%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV--S 143
K+F+G L T + LR FSR+G I + V KD RGFGFV FA E AD +
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 144 RRSHEICGQQVAIDSAT--PLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDW 201
+ E G+ + +D A+ P G Q + GGY G G G+L + W
Sbjct: 63 MNNQEFDGRIIRVDKASERPAARNGGFQGRGGYNSPADGGYRG-----GGAGGTLPYLPW 117
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 129 (50.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 42/132 (31%), Positives = 55/132 (41%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR- 144
K+FVG L + L +FS FG I +V V KD + RGFGF+TF A R
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYG--RMYGSLDFDDW 201
+ G+Q+ +D A F + GG + YG R Y S +
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRP-GGY 125
Query: 202 GYGMGSGRPSRG 213
GYG G R G
Sbjct: 126 GYGYGRSRDYNG 137
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 130 (50.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 43/130 (33%), Positives = 61/130 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ LR YF ++G+I + + D RGF FVTF + D+ V+
Sbjct: 55 KKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVT 114
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMM---NAAETFGGYGGPMRTYGRMYGSLDFD 199
++ H + G + PL S +F N + T GY G R YG G D
Sbjct: 115 QKYHTVNGHHKC-EVRKPLSKQEMASASFSQRGRNGSRT--GYPGGSRGYGS--GGQDCG 169
Query: 200 DWGYGMG-SG 208
+ G G G SG
Sbjct: 170 NQGSGYGGSG 179
Score = 47 (21.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 7 SKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+K RG GF+T S VD A P + D R V
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVV 34
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 146 (56.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 41/128 (32%), Positives = 63/128 (49%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L + T E L YFS++G ++D V +DP RGFGFVTFA A+ ++
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 144 RRSHEICGQQVAIDSATPLD-------------DAGPSQNFMMNAAETFGGYG-GPMRTY 189
R H++ G+ V A P + D P ++N T G + +R Y
Sbjct: 130 DRPHKLGGKTVDSKRAIPREQMSSMIPPPFFETDPAPGCKLLLNGI-TNGVHSVDSLRVY 188
Query: 190 GRMYGSLD 197
+G+LD
Sbjct: 189 FETFGTLD 196
>ZFIN|ZDB-GENE-031030-1 [details] [associations]
symbol:tardbpl "TAR DNA binding protein, like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-031030-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q14103 HOGENOM:HOG000254792
HOVERGEN:HBG058671 GeneTree:ENSGT00570000079202 OMA:PSISRIF
EMBL:CR381616 EMBL:BC044405 IPI:IPI00504192 RefSeq:NP_938178.1
UniGene:Dr.33664 SMR:Q803N5 STRING:Q803N5
Ensembl:ENSDART00000027255 GeneID:386630 KEGG:dre:386630 CTD:386630
InParanoid:Q803N5 NextBio:20813960 Uniprot:Q803N5
Length = 303
Score = 145 (56.1 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ TA++LR++F ++G + DV++PK P R F FVTFA++ VA +
Sbjct: 197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPK-P----FRAFAFVTFADDQVAQSLCG 251
Query: 145 RSHEICGQQVAIDSATP 161
I G V I +A P
Sbjct: 252 EDLIIKGTSVHISNAEP 268
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD 140
Q+ I +G LP + T +DL+ YF FG ++ V V +D K +GFGFV F +
Sbjct: 102 QKTSDLIVLG-LPWKTTEQDLKDYFGTFGEVIMVQVKRDAKSGNSKGFGFVRFTDYETQI 160
Query: 141 RVSRRSHEICGQQVAI---DSATPLDDAGPSQNFMMNAAETFGG 181
+V + H I G+ +S L+ AGP + M + + F G
Sbjct: 161 KVMSQRHMIDGRWCDCKLPNSKYFLEQAGPDEP--MRSRKVFVG 202
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 44/136 (32%), Positives = 68/136 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F +G + V +DP RGFGFVT+A EEV A +
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 71
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYG----GPMRTYGRMYGSLD 197
+ R H++ G+ V A +D+ + + + + F GG +R Y YG ++
Sbjct: 72 NARPHKVDGRVVEPKRAVSREDS-QTLDAHLTVKKIFVGGIKENTEDHLRDYFE-YGKIE 129
Query: 198 FDDWGYGMGSGRPSRG 213
+ GSG+ RG
Sbjct: 130 VIEIMTDRGSGK-KRG 144
Score = 123 (48.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/131 (30%), Positives = 60/131 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG + +E T + LR YF +G+I + + D RGF FVTF + D++ +
Sbjct: 104 KKIFVGGI-KENTEDHLRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQ 161
Query: 145 RSHEICGQQVAIDSATPLDD-AGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ H + G + A + A S + ++ + FGG G G GS G
Sbjct: 162 KYHTVNGHNCEVRKALSKQEMASASSSQSLSGSGNFGGGCGGNSGRGGFSGSRGGGGNG- 220
Query: 204 GMGSGRPSRGD 214
G G G G+
Sbjct: 221 GSGDGYSGFGN 231
Score = 60 (26.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
+D +K RG GF+T+A+ VD A P + D R V
Sbjct: 46 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVV 83
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 125 (49.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 41/136 (30%), Positives = 63/136 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L + T E LR+Y+ ++G + D V +D RG GFVTF+ D ++
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 197
R H I G+ + A P + +G + + F GG +R Y YG +D
Sbjct: 69 ARPHSIDGRVLEPRRAIPREASG-QRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKID 127
Query: 198 FDDWGYGMGSGRPSRG 213
+ SGR RG
Sbjct: 128 AIEIITDRQSGR-KRG 142
Score = 124 (48.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KK+FVG + ++ LR YF ++G+I + + D + RGFGFVTF + D+ V
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVL 159
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-----GGYGGPMRTYGRMYGSLDF 198
++ H I G + A + + Q + F +GG +GR G+ F
Sbjct: 160 QKYHAINGHHAEVRKALSIWEMQQVQGSRSRKRDPFDFSVSSSWGG---NFGRGPGT-KF 215
Query: 199 DDWGYGMGSGRPSR 212
G G+G SR
Sbjct: 216 RGEADGYGNGPRSR 229
Score = 60 (26.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D S+ RG GF+TF+S VD A
Sbjct: 42 RDFASQRSRGCGFVTFSSVTEVDAA 66
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 143 (55.4 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KKIFVG L T ED+++YF +FG++ + D ++ R FGFVTF E + ++V
Sbjct: 20 KKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCE 79
Query: 145 -RSHEICGQQVAIDSATPLDDAGPS 168
HEI + V A P + P+
Sbjct: 80 IHFHEINNKMVECKKAQPKEVMSPT 104
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 128 (50.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
KIFV RLP E L+ +FS+FG I D YV D +GFGFV F +
Sbjct: 5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64
Query: 146 SHEICGQQVAIDSATPLD 163
+EI G+++ ++ A D
Sbjct: 65 DNEINGRKLVVNEALAKD 82
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 128 (50.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 40/125 (32%), Positives = 53/125 (42%)
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-- 144
+F+G L + L +FS FG I +V V KD + RGF F+TF A R
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 145 RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYG 204
+ G+Q+ +D A L F + GG + YG G D GYG
Sbjct: 68 NGKSLDGRQIRVDHAGKLARGTRGCAFRAHGRGRSYSRGGGDQGYGS--GRYDSQPGGYG 125
Query: 205 MGSGR 209
GSGR
Sbjct: 126 YGSGR 130
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 144 (55.7 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+K+FVGR ++ T ++LR +FS++G ++DV++PK P R F FVTFA++ +A
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-P----FRAFAFVTFADDQIAQ---- 241
Query: 145 RSHEICGQQVAIDS-ATPLDDAGPSQNFMMNAAETFGGYGGPM--RTYGR 191
+CG+ + I + + +A P N E G +G + YGR
Sbjct: 242 ---SLCGEDLIIKGISVHISNAEPKHN-SNRQLERSGRFGVHLISNVYGR 287
Score = 135 (52.6 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 181
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 145 (56.1 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 39/121 (32%), Positives = 61/121 (50%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L + T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 144 RRSHEICGQQVAIDSATPLDDAG-PSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSL 196
R H I G+ V A +++G P + + + F GG +R Y YG +
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAH--VTVKKLFVGGIKEDTEEHHLRDYFAEYGKI 126
Query: 197 D 197
D
Sbjct: 127 D 127
Score = 135 (52.6 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 59/198 (29%), Positives = 85/198 (42%)
Query: 36 PVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG----KK 86
P + S G +G + + S A AA+ A P D P R ES + KK
Sbjct: 44 PASKRSRG-FG-FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKK 101
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRR 145
+FVG + ++ LR YF+ +G+I + + D + RGFGFVTF + D+ V ++
Sbjct: 102 LFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161
Query: 146 SHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG---GPMRTYGRMYGSLDFDDWG 202
H I G + A + Q+ FG +G G +G GS +F
Sbjct: 162 YHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-FGDSRGGGGNFGPGPGS-NFRGGS 219
Query: 203 YGMGSGRPSRGDWRYRPY 220
G GSGR GD Y Y
Sbjct: 220 DGYGSGR-GFGDG-YNGY 235
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 138 (53.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 45/139 (32%), Positives = 69/139 (49%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L E T E LR +F +G + V +DP RGFGFVT+A EEV A +
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 71
Query: 143 SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG--YG--GPMRTYGRMYGSLDF 198
+ R H++ G+ V A +D+ + + + + FGG Y G +G +
Sbjct: 72 NARPHKVDGRVVEPKRAVSREDS-QTLDAHLTVKKIFGGGSYNDFGTYNNQSSNFGPIKG 130
Query: 199 DDWGYGMGSGRPSRGDWRY 217
++G G SG P G +Y
Sbjct: 131 GNFG-GKSSG-PCGGGGQY 147
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 125 (49.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 47/157 (29%), Positives = 67/157 (42%)
Query: 78 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132
E SQR G KKIF G + ++ LR YF + G+I + + DP RGF FVT
Sbjct: 88 EGSQRPGAHLTVKKIFAGGIKEDTEERHLRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVT 147
Query: 133 FAEEVVADR-VSRRSHEICGQQVAIDSATPLD-----DAGPSQNFMMNAAETFGGYGGPM 186
F + D+ V ++ H + G + + G N N FGG GG
Sbjct: 148 FDDHDSVDKTVIQKYHTVNGHNRERGRSGSGNFGGGRGGGDGYNGFGNDGSNFGG-GGSY 206
Query: 187 RTYGRM------YGSLDFDDWGYGMGSGRPSRGDWRY 217
+G +G + +++G G SG P G RY
Sbjct: 207 SDFGNYNNRSSNFGPVKGENFG-GRSSG-PDGGGGRY 241
Score = 51 (23.0 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 4 DQGSKAHRGIGFITFASAVVVD---RATPKEDDFRPV 37
D +K RG F+T+A+ VD A P + D R V
Sbjct: 43 DPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVV 79
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 134 (52.2 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
+K+F+G L E T E L+ Y+ ++G + D V + RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETF-GGYGGP-----MRTYGRMYGSLD 197
R H I G+ V A + + Q ++N + F GG +R Y YG +D
Sbjct: 81 ARPHSIDGRVVDPKRAVSREKS-EKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKID 139
Score = 127 (49.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 53/184 (28%), Positives = 80/184 (43%)
Query: 44 GYGAYNAYISAATRYAALGA-PTLYD----HPGSFYGRGESSQRIG-----KKIFVGRLP 93
G+G + + S A AA+ A P D P R E S++ G KK+FVG +
Sbjct: 63 GFG-FVTFSSVAEVDAAMAARPHSIDGRVVDPKRAVSR-EKSEKQGSLVNVKKLFVGGIK 120
Query: 94 QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQ 152
++ LR YF ++G+I + + D + RGFGFVTF + D++ ++ H I G
Sbjct: 121 EDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGH 180
Query: 153 QVAIDSATPLDDAGPSQNFMMNAAETFG----GYGGPMRTYGRMYGSLDFDDWGYGMGSG 208
+ + A + Q FG GG +GR G+ F G G+G
Sbjct: 181 RAEVGKALSRQEMKEIQGPRSRKGGPFGFSVSSNGGG--NFGRGPGT-KFRGEADGYGNG 237
Query: 209 RPSR 212
SR
Sbjct: 238 PESR 241
Score = 56 (24.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 7 SKAHRGIGFITFASAVVVDRA 27
S+ RG GF+TF+S VD A
Sbjct: 58 SQKSRGFGFVTFSSVAEVDAA 78
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 140 (54.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 44/132 (33%), Positives = 60/132 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KK+FVG L + DL +FS+FG + + D + RGFGFV F AD+ +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ H I G +V + A P +D S + + GG GG R GR L G
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIH-SGGGGGGSRSSRGGRGGRGRGGGRDQNGLS--KGGG 214
Query: 204 GMGSGRPSRGDW 215
G G G S G +
Sbjct: 215 GGGGGYNSYGGY 226
Score = 109 (43.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 137
E+SQ K+F+G L + + LR +F FG + D V +P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 138 VADRVSRRS-HEICGQQVAIDSATPLDDA 165
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 47 (21.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 180 GGYGGPMRTYGRMYGSLDF--DDWGYGMGS-GRPSRGDWRYRP 219
GG GG YG G + D+G G G G S+ Y P
Sbjct: 230 GGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 272
Score = 45 (20.9 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 179 FGGYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWR 216
FG Y +YG M G G G GR + G +R
Sbjct: 260 FGSYSQHQSSYGPMKGGGGGGGGGSSWG-GRSNSGPYR 296
Score = 36 (17.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 7 SKAHRGIGFITFASAVVVDRA 27
+K R GF+T+++ D A
Sbjct: 44 TKRSRCFGFVTYSNVEEADAA 64
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 124 (48.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 45/138 (32%), Positives = 65/138 (47%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
K+I VG + ++ LR YF +G+I + + D + +G + F FVTF + D+ V
Sbjct: 96 KEISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTD-RGSGKKEFAFVTFDDHDSVDKIVI 154
Query: 144 RRSHEICG---QQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYG-RMYGSLDFD 199
++ H + G + VA+ S + A SQ + FGG GGP G R YGS
Sbjct: 155 QKYHTVNGHNCETVAL-SKQEMASASSSQRGRSGSGN-FGG-GGPGYCEGSRGYGSGGQG 211
Query: 200 DWGYGMGSGRPSRGDWRY 217
D G G G D RY
Sbjct: 212 DGNQGSGYGGSGSYD-RY 228
Score = 124 (48.7 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 39/133 (29%), Positives = 62/133 (46%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 142
+K+F+G L + T E LR +F ++ + D +DP RGFGFVT+ EEV A +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDA-AM 63
Query: 143 SRRSHEICGQQVAIDSATPLDDA-GPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSL 196
+ R H++ G V A +D+ P + + GG +R Y YG +
Sbjct: 64 NARPHKVDGSFVEPKRAVSREDSQSPGAHLTVKEISV-GGIKEDTEEHHLRDYFEHYGKI 122
Query: 197 DFDDWGYGMGSGR 209
+ + GSG+
Sbjct: 123 EVIEIMTDRGSGK 135
Score = 55 (24.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T+ + VD A
Sbjct: 38 RDPNTKRSRGFGFVTYTTVEEVDAA 62
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 140 (54.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 138
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 139 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGYG 183
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 136 (52.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 44/137 (32%), Positives = 61/137 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 240 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 288
Query: 204 GMGSGRPSRGDWRYRPY 220
G S R + Y+PY
Sbjct: 289 GKVSRRGGHQN-SYKPY 304
Score = 41 (19.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 136 RGFGFVLFKESESVDKVMDQKE 157
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 143 (55.4 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 74 YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF 133
+ ++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F
Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145
Query: 134 AEEVVADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAA----------ETFGGY 182
E D+V ++ H++ G+ + A + P + + E FGG+
Sbjct: 146 KESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Query: 183 G 183
G
Sbjct: 206 G 206
Score = 136 (52.9 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 44/137 (32%), Positives = 61/137 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 143
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
++ H + + I A + Q + GG+ G R GR G D GY
Sbjct: 242 KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-----GGFAG--RARGR--GG-DQQS-GY 290
Query: 204 GMGSGRPSRGDWRYRPY 220
G S R + Y+PY
Sbjct: 291 GKVSRRGGHQN-SYKPY 306
Score = 41 (19.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 11 RGIGFITFASAVVVDRATPKED 32
RG GF+ F + VD+ +++
Sbjct: 138 RGFGFVLFKESESVDKVMDQKE 159
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 127 (49.8 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 34/86 (39%), Positives = 47/86 (54%)
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV--VADRVSR 144
+FV + + +EDLRR F R+G I+DVYVP D RGF +V F E+V D +
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF-EDVRDAEDALHN 70
Query: 145 RSHE-ICGQQVAIDSATPLDDAGPSQ 169
+ ICG+Q+ I A D P+Q
Sbjct: 71 LDRKWICGRQIEIQFAQG-DRKTPNQ 95
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 127 (49.8 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 34/86 (39%), Positives = 47/86 (54%)
Query: 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV--VADRVSR 144
+FV + + +EDLRR F R+G I+DVYVP D RGF +V F E+V D +
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF-EDVRDAEDALHN 70
Query: 145 RSHE-ICGQQVAIDSATPLDDAGPSQ 169
+ ICG+Q+ I A D P+Q
Sbjct: 71 LDRKWICGRQIEIQFAQG-DRKTPNQ 95
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 128 (50.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 46/142 (32%), Positives = 63/142 (44%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 143
KKIFVG + ++ +LR F +G+I + V +D + RG FVTF + D+ V
Sbjct: 57 KKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVV 116
Query: 144 RRSHEICGQQVAIDSATPLDD----------AGPSQNFMMNAAETFGGYGGPMRTYGRMY 193
++ H I G + A + G S NFM FGG GG +GR
Sbjct: 117 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGN-FGGGGG---NFGR-- 170
Query: 194 GSLDFDDWGYGMGSGRPSRGDW 215
G GYG G G SRG +
Sbjct: 171 GGNFGGRGGYG-GGGGGSRGSY 191
Score = 52 (23.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+T++ VD A
Sbjct: 2 RDPKTKRSRGFGFVTYSCVEEVDAA 26
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 126 (49.4 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 144
KIFVG LP T LR+YF FG I + V D ++TG RG+GFVT A+ A+R +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD-RQTGKSRGYGFVTMADRAAAERACK 70
Query: 145 RSHEIC-GQQVAIDSA 159
+ I G++ ++ A
Sbjct: 71 DPNPIIDGRKANVNLA 86
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 145 (56.1 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
+KIF+G L + T E LR +FS+FG + D V +DP RGFGFVT+ + + V R
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQR 91
Query: 145 -RSHEICGQQVAIDSATPLDD 164
R H I + V A P D
Sbjct: 92 ARPHTIDNKIVETKHALPRQD 112
Score = 98 (39.6 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADR-V 142
K+IF+G L + +R YFS+FG + V + D + TG R FGF+ F + A++ +
Sbjct: 136 KRIFLGGLKEYHDENIVREYFSQFGPVASVKLLMD-RETGRQRAFGFLEFVDPSSAEKAL 194
Query: 143 SRRSHEICGQQVAIDSATPLDD 164
+ R H I V + +T D
Sbjct: 195 APRKHWILQTLVEVKRSTQKAD 216
Score = 51 (23.0 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 3 KDQGSKAHRGIGFITFA---SAVVVDRATPKEDD 33
+D S RG GF+T+ S +V RA P D
Sbjct: 65 RDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTID 98
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 139 (54.0 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 37/101 (36%), Positives = 54/101 (53%)
Query: 63 APTLYDHPGSFYGRGESSQR--IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP 120
AP+++ P + SQ+ KIFVG LP T LR+YF FG I + V D
Sbjct: 8 APSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD- 66
Query: 121 KRTGH-RGFGFVTFAEEVVADRVSRRSHEIC-GQQVAIDSA 159
++TG RG+GFVT A+ ADR + + I G++ ++ A
Sbjct: 67 RQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLA 107
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 137 (53.3 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 43/129 (33%), Positives = 65/129 (50%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+FVG L + + L + FS++G+I +V V KD + RGFGFVTF ++ ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 203
+ G+Q+ +D A D S+ + +A G + G R GR + S D GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD-NRSRGYRGGSAGGRGFFRGG-RGRGRGF-SRGGGDRGY 123
Query: 204 GMGSGRPSR 212
G GS SR
Sbjct: 124 G-GSRFESR 131
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 125 (49.1 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 44/128 (34%), Positives = 62/128 (48%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 144
K+FVG L + + L FS++G+I +V V KD + RGFGFVTF E D ++
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 145 RSHE-ICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMY--GSLDFDDW 201
+ + + G+Q+ +D A G S N + GGY G GR + G
Sbjct: 67 MNGKTVDGRQIRVDQA------GKSSN------DRRGGYRGGSSGGGRGFFRGGRGRGGG 114
Query: 202 GYGMGSGR 209
GYG GS R
Sbjct: 115 GYG-GSSR 121
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 143 (55.4 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K F+G +PQ T++ + YF ++G + V + +D + +RGF FVT A + +R+ R
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 146 SHEICGQQVAI---DSATPLD 163
+HE+ G++V + ++ TP D
Sbjct: 175 THELNGKRVDVREENNTTPSD 195
Score = 107 (42.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 31/80 (38%), Positives = 40/80 (50%)
Query: 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVADR 141
I +KIFVG L T + L YFS FG I V + D R FGFV F+ E VA
Sbjct: 196 IQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSSGRS-RCFGFVVFSNENSVAKV 254
Query: 142 VSRRSHEICGQQVAIDSATP 161
+ + H+I + V + A P
Sbjct: 255 LKHKRHKIYDKMVEVRKAEP 274
Score = 47 (21.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K +RG F+T AS + +R
Sbjct: 147 QDHETKRNRGFAFVTMASHINKER 170
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 143 (55.4 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145
K F+G +PQ T++ + YF ++G + V + +D + +RGF FVT A + +R+ R
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 146 SHEICGQQVAI---DSATPLD 163
+HE+ G++V + ++ TP D
Sbjct: 175 THELNGKRVDVREENNTTPSD 195
Score = 107 (42.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 31/80 (38%), Positives = 40/80 (50%)
Query: 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVADR 141
I +KIFVG L T + L YFS FG I V + D R FGFV F+ E VA
Sbjct: 196 IQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLDSSGRS-RCFGFVVFSNENSVAKV 254
Query: 142 VSRRSHEICGQQVAIDSATP 161
+ + H+I + V + A P
Sbjct: 255 LKHKRHKIYDKMVEVRKAEP 274
Score = 47 (21.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDR 26
+D +K +RG F+T AS + +R
Sbjct: 147 QDHETKRNRGFAFVTMASHINKER 170
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 138 (53.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 44/137 (32%), Positives = 63/137 (45%)
Query: 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144
KK+FVG L + DL +FS+FG + + D + RGFGFV F AD+ +
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 162
Query: 145 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLD------ 197
+ H I G +V + A P +D S + + GG GG R GR L
Sbjct: 163 VKFHPIQGHRVEVKKAVPKEDIH-SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGG 221
Query: 198 FDDWG-YGMGSGRPSRG 213
++ +G YG G G + G
Sbjct: 222 YNSYGGYGGGGGYNAYG 238
Score = 109 (43.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 137
E+SQ K+F+G L + + LR +F FG + D V +P+ R FGFVT++
Sbjct: 7 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 64
Query: 138 VADRVSRRS-HEICGQQVAIDSATPLDDA 165
AD S H + G V + A +D+
Sbjct: 65 EADAAMAASPHAVDGNTVELKRAVSREDS 93
Score = 50 (22.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 178 TFGGYGGP--MRTYGRMYGSLDF--DDWGYGMGS-GRPSRGDWRYRP 219
++GGYGG YG G + D+G G G G S+ Y P
Sbjct: 224 SYGGYGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGP 270
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 181 GYGGPMRTYGRMYGSLDFDDWGYGMGSGRPSRGDWRY 217
G GG +YG G ++ YG G G S G Y
Sbjct: 217 GGGGGYNSYGGYGGGGGYN--AYGGGGGGSSYGGSDY 251
Score = 38 (18.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 17/42 (40%), Positives = 18/42 (42%)
Query: 166 GPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGS 207
G S N+ GGYGG YG GS GYG GS
Sbjct: 280 GSSWGGRSNSGPYRGGYGGG-GGYGGRCGS------GYG-GS 313
Score = 36 (17.7 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 7 SKAHRGIGFITFASAVVVDRA 27
+K R GF+T+++ D A
Sbjct: 49 TKRSRCFGFVTYSNVEEADAA 69
>UNIPROTKB|K7EJM5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000473118 Uniprot:K7EJM5
Length = 201
Score = 135 (52.6 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 139
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 140 DRVSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 181
+V + H I G+ D P ++ SQ+ + + + F G
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLP--NSKQSQDEPLRSRKVFVG 196
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 130 (50.8 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEE 136
E +++GK IFVG + T E+ +FS+FG+I+D + D K TG RGFGFVT+
Sbjct: 240 EDQEKVGK-IFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMID-KDTGRSRGFGFVTYDSP 297
Query: 137 VVADRVSRRSH-EICGQQVAIDSATP 161
D+V + + G+ + + A P
Sbjct: 298 AAVDKVCVNKYLTLKGKAMEVKRAAP 323
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 137
ES+ +K F+G L + T E L +F ++G I+D + KD RGFGF+TF +
Sbjct: 155 ESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAK 214
Query: 138 VADRVSRRSHEICGQQVAIDSATPLDD 164
D + + H + G+ + A +D
Sbjct: 215 SVDALLKDRHVLDGKLIDPKRAISKED 241
Score = 53 (23.7 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 3 KDQGSKAHRGIGFITFASAVVVD 25
KD + RG GF+TF A VD
Sbjct: 195 KDSATGRSRGFGFLTFEDAKSVD 217
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 123 (48.4 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 46/153 (30%), Positives = 63/153 (41%)
Query: 70 PGSFYGRGESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG 124
P F R E SQR KKIFVG + ++ E+ YF ++G+ + V D
Sbjct: 86 PKRFVSR-EDSQRPAAYLTVKKIFVGGIKEDT--EEHEDYFEQYGKFEVIEVMTDQGSGK 142
Query: 125 HRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYG 183
RGF FVTF D+ V ++ H + G + A L S +F G +G
Sbjct: 143 KRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKAL-LKQEMASASFSQRGQSGSGNFG 201
Query: 184 GPMRTYGRMYGSLDFDD---WGYGMGSGRPSRG 213
G G G+ +FD W G G R G
Sbjct: 202 GGRG--GGFGGNDNFDHDNHWSRGFGGSRSGGG 232
Score = 109 (43.4 bits), Expect = 0.00075, P = 0.00075
Identities = 38/133 (28%), Positives = 59/133 (44%)
Query: 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRVS 143
K+F+ L E T E LR +F ++G + V +DP RGFGFV FA EEV A ++
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDA-AMN 73
Query: 144 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRT---YGRMYGSLDFDD 200
R +++ G+ + +D+ ++ GG Y YG + +
Sbjct: 74 ARPNKVNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKEDTEEHEDYFEQYGKFEVIE 133
Query: 201 WGYGMGSGRPSRG 213
GSG+ RG
Sbjct: 134 VMTDQGSGK-KRG 145
Score = 56 (24.8 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 KDQGSKAHRGIGFITFASAVVVDRA 27
+D +K RG GF+ FA+ VD A
Sbjct: 47 RDPNTKRSRGFGFVMFATVEEVDAA 71
WARNING: HSPs involving 415 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 220 220 0.00094 112 3 11 22 0.38 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 665
No. of states in DFA: 585 (62 KB)
Total size of DFA: 171 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.77u 0.14s 18.91t Elapsed: 00:00:01
Total cpu time: 18.80u 0.14s 18.94t Elapsed: 00:00:01
Start: Sat May 11 05:48:05 2013 End: Sat May 11 05:48:06 2013
WARNINGS ISSUED: 2