Query 027706
Match_columns 220
No_of_seqs 263 out of 2397
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 13:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 9.8E-31 2.1E-35 217.1 18.6 136 1-165 139-278 (346)
2 KOG0148 Apoptosis-promoting RN 100.0 5.2E-31 1.1E-35 203.3 12.5 147 1-166 94-242 (321)
3 TIGR01645 half-pint poly-U bin 99.9 9.8E-27 2.1E-31 203.1 14.4 146 1-164 139-286 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.4E-26 1.4E-30 190.5 15.4 164 1-164 121-351 (352)
5 KOG0144 RNA-binding protein CU 99.9 4.3E-26 9.2E-31 186.1 7.3 139 1-168 66-212 (510)
6 TIGR01648 hnRNP-R-Q heterogene 99.9 1.4E-24 3E-29 189.3 16.8 130 4-165 175-310 (578)
7 KOG0117 Heterogeneous nuclear 99.9 4.4E-25 9.4E-30 180.9 12.7 159 1-167 115-336 (506)
8 KOG0145 RNA-binding protein EL 99.9 7.5E-26 1.6E-30 174.1 7.3 135 1-164 73-211 (360)
9 TIGR01622 SF-CC1 splicing fact 99.9 2.5E-24 5.4E-29 186.8 13.8 143 1-161 121-265 (457)
10 KOG0131 Splicing factor 3b, su 99.9 2.1E-25 4.5E-30 163.2 5.6 137 1-165 41-180 (203)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.2E-24 7E-29 180.2 12.6 134 1-163 35-172 (352)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.1E-23 1.5E-27 179.9 15.3 158 4-162 216-375 (509)
13 PLN03134 glycine-rich RNA-bind 99.9 4.8E-22 1E-26 145.9 16.2 86 80-165 30-117 (144)
14 TIGR01628 PABP-1234 polyadenyl 99.9 3.5E-23 7.5E-28 183.9 11.0 150 2-164 211-366 (562)
15 TIGR01628 PABP-1234 polyadenyl 99.9 7.4E-23 1.6E-27 181.8 11.2 137 1-165 32-170 (562)
16 KOG0127 Nucleolar protein fibr 99.9 4.4E-22 9.6E-27 166.9 11.2 159 1-165 37-199 (678)
17 TIGR01648 hnRNP-R-Q heterogene 99.9 7.2E-22 1.6E-26 172.4 11.7 127 1-163 90-223 (578)
18 KOG0145 RNA-binding protein EL 99.9 9.4E-21 2E-25 146.1 12.9 162 1-162 159-358 (360)
19 KOG0127 Nucleolar protein fibr 99.8 9.8E-21 2.1E-25 158.9 12.5 163 1-164 149-380 (678)
20 KOG0124 Polypyrimidine tract-b 99.8 1.2E-20 2.7E-25 151.6 10.0 142 2-162 146-290 (544)
21 KOG4205 RNA-binding protein mu 99.8 3.3E-20 7.1E-25 150.5 12.2 145 1-169 38-183 (311)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5E-20 1.1E-24 161.9 11.7 160 1-161 327-501 (509)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 2E-19 4.3E-24 156.8 12.5 151 10-162 312-480 (481)
24 KOG0147 Transcriptional coacti 99.8 6.6E-20 1.4E-24 154.2 7.6 150 1-166 211-362 (549)
25 KOG0123 Polyadenylate-binding 99.8 8.9E-19 1.9E-23 146.6 10.2 126 1-166 30-157 (369)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.4E-18 2.9E-23 151.6 11.7 132 10-162 37-174 (481)
27 KOG0110 RNA-binding protein (R 99.8 1.8E-19 3.8E-24 155.5 5.7 135 9-163 558-694 (725)
28 KOG0149 Predicted RNA-binding 99.8 3.6E-18 7.7E-23 130.2 8.3 80 81-160 9-89 (247)
29 TIGR01622 SF-CC1 splicing fact 99.7 4.6E-17 1E-21 141.4 13.0 157 1-161 218-447 (457)
30 TIGR01659 sex-lethal sex-letha 99.7 9.8E-17 2.1E-21 133.6 11.7 83 80-162 103-187 (346)
31 KOG0122 Translation initiation 99.7 3.8E-16 8.2E-21 119.7 11.1 83 80-162 185-269 (270)
32 KOG0121 Nuclear cap-binding pr 99.7 2E-16 4.4E-21 109.8 7.8 81 80-160 32-114 (153)
33 KOG0109 RNA-binding protein LA 99.7 2.8E-16 6E-21 123.2 8.4 119 11-168 36-156 (346)
34 KOG0107 Alternative splicing f 99.6 5.1E-15 1.1E-19 108.3 13.1 77 83-164 9-87 (195)
35 PF00076 RRM_1: RNA recognitio 99.6 1.1E-15 2.5E-20 98.2 8.0 68 87-155 1-70 (70)
36 KOG0105 Alternative splicing f 99.6 3.2E-15 7E-20 110.2 10.5 76 82-160 4-81 (241)
37 KOG0123 Polyadenylate-binding 99.6 1.3E-15 2.9E-20 127.6 8.1 148 6-165 203-352 (369)
38 KOG0125 Ataxin 2-binding prote 99.6 3.1E-15 6.7E-20 119.1 9.6 82 79-162 91-174 (376)
39 KOG0146 RNA-binding protein ET 99.6 1.8E-15 4E-20 117.4 7.5 87 81-167 282-370 (371)
40 KOG0111 Cyclophilin-type pepti 99.6 1.1E-15 2.3E-20 115.6 5.6 84 81-164 7-92 (298)
41 KOG4207 Predicted splicing fac 99.6 1.8E-14 3.8E-19 108.1 11.6 82 80-161 9-92 (256)
42 PLN03120 nucleic acid binding 99.6 1.2E-14 2.5E-19 114.5 10.8 76 84-162 4-80 (260)
43 TIGR01645 half-pint poly-U bin 99.6 1.6E-14 3.4E-19 127.0 10.3 80 81-160 104-185 (612)
44 PF14259 RRM_6: RNA recognitio 99.6 2.3E-14 4.9E-19 92.4 8.3 68 87-155 1-70 (70)
45 KOG0113 U1 small nuclear ribon 99.5 1.9E-13 4.2E-18 107.7 14.2 83 81-163 98-182 (335)
46 KOG4211 Splicing factor hnRNP- 99.5 3.4E-14 7.3E-19 118.7 10.5 137 4-160 42-180 (510)
47 KOG0126 Predicted RNA-binding 99.5 9.1E-16 2E-20 112.8 0.5 78 83-160 34-113 (219)
48 KOG0130 RNA-binding protein RB 99.5 7.9E-14 1.7E-18 97.8 8.2 85 80-164 68-154 (170)
49 KOG0148 Apoptosis-promoting RN 99.5 8.7E-14 1.9E-18 108.3 8.5 82 84-165 62-145 (321)
50 KOG0144 RNA-binding protein CU 99.5 5.9E-14 1.3E-18 115.5 7.9 86 80-165 30-120 (510)
51 PLN03213 repressor of silencin 99.5 9.9E-14 2.1E-18 116.1 9.3 78 80-161 6-87 (759)
52 PLN03121 nucleic acid binding 99.5 2.1E-13 4.6E-18 105.8 10.4 75 83-160 4-79 (243)
53 KOG4206 Spliceosomal protein s 99.5 5.2E-13 1.1E-17 101.8 11.5 151 5-160 46-220 (221)
54 KOG0131 Splicing factor 3b, su 99.5 1.2E-13 2.6E-18 101.7 6.3 81 80-160 5-87 (203)
55 KOG0114 Predicted RNA-binding 99.5 8.4E-13 1.8E-17 88.5 9.4 81 80-163 14-96 (124)
56 smart00362 RRM_2 RNA recogniti 99.5 7.1E-13 1.5E-17 84.7 8.9 70 86-157 1-72 (72)
57 KOG0116 RasGAP SH3 binding pro 99.4 2.2E-12 4.8E-17 108.8 13.9 83 82-164 286-369 (419)
58 KOG0108 mRNA cleavage and poly 99.4 3.8E-13 8.1E-18 114.0 8.6 83 85-167 19-103 (435)
59 smart00360 RRM RNA recognition 99.4 9.5E-13 2.1E-17 83.8 8.2 69 89-157 1-71 (71)
60 COG0724 RNA-binding proteins ( 99.4 1.3E-12 2.9E-17 104.9 9.8 78 84-161 115-194 (306)
61 KOG0117 Heterogeneous nuclear 99.4 1.5E-12 3.2E-17 107.8 9.4 78 82-159 81-161 (506)
62 cd00590 RRM RRM (RNA recogniti 99.4 7.5E-12 1.6E-16 80.4 9.4 72 86-158 1-74 (74)
63 KOG0147 Transcriptional coacti 99.4 2.2E-12 4.7E-17 109.3 7.8 154 1-159 310-525 (549)
64 KOG4212 RNA-binding protein hn 99.3 1.5E-11 3.3E-16 101.7 11.8 77 83-160 43-122 (608)
65 KOG0109 RNA-binding protein LA 99.3 2E-12 4.2E-17 101.8 5.9 70 85-162 3-74 (346)
66 KOG4205 RNA-binding protein mu 99.3 2.9E-12 6.3E-17 104.3 5.6 84 83-166 5-89 (311)
67 KOG0124 Polypyrimidine tract-b 99.3 4.2E-12 9.1E-17 102.9 4.5 79 81-159 110-190 (544)
68 smart00361 RRM_1 RNA recogniti 99.2 3.6E-11 7.7E-16 77.4 7.4 59 98-156 2-69 (70)
69 PF13893 RRM_5: RNA recognitio 99.2 7.1E-11 1.5E-15 72.5 7.5 54 101-159 1-56 (56)
70 KOG0415 Predicted peptidyl pro 99.2 2.2E-11 4.8E-16 98.3 6.2 81 81-161 236-318 (479)
71 KOG0105 Alternative splicing f 99.2 1.1E-09 2.3E-14 81.3 14.3 129 9-147 43-171 (241)
72 KOG0110 RNA-binding protein (R 99.2 1.6E-10 3.4E-15 100.8 10.5 147 14-160 424-596 (725)
73 KOG0146 RNA-binding protein ET 99.2 5.5E-11 1.2E-15 92.8 6.6 83 83-166 18-105 (371)
74 KOG0120 Splicing factor U2AF, 99.2 7.6E-11 1.6E-15 100.9 8.0 155 1-160 321-490 (500)
75 KOG0153 Predicted RNA-binding 99.2 1.7E-10 3.6E-15 93.1 8.9 77 80-162 224-303 (377)
76 KOG0106 Alternative splicing f 99.2 5E-11 1.1E-15 91.7 5.7 132 11-159 35-168 (216)
77 KOG1457 RNA binding protein (c 99.1 1.6E-10 3.4E-15 88.1 6.5 132 10-145 76-267 (284)
78 KOG0226 RNA-binding proteins [ 99.1 1.5E-10 3.2E-15 89.7 5.9 137 3-163 133-271 (290)
79 KOG4210 Nuclear localization s 99.1 2.5E-10 5.5E-15 92.6 7.2 144 3-165 122-267 (285)
80 KOG0132 RNA polymerase II C-te 99.1 4.7E-10 1E-14 98.7 7.8 78 83-166 420-499 (894)
81 KOG4212 RNA-binding protein hn 99.0 1.5E-09 3.3E-14 90.1 9.4 150 7-158 82-290 (608)
82 KOG1365 RNA-binding protein Fu 99.0 3.2E-10 6.9E-15 92.6 4.6 152 7-160 202-360 (508)
83 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.2E-09 4.7E-14 91.8 9.4 80 82-161 403-484 (940)
84 KOG4208 Nucleolar RNA-binding 99.0 2.7E-09 5.9E-14 80.5 8.3 83 80-162 45-130 (214)
85 KOG0120 Splicing factor U2AF, 99.0 1.6E-09 3.4E-14 92.9 7.9 148 8-163 220-370 (500)
86 KOG4211 Splicing factor hnRNP- 99.0 2.3E-08 4.9E-13 84.3 14.1 72 85-158 282-354 (510)
87 PLN03134 glycine-rich RNA-bind 98.9 2.8E-10 6.1E-15 83.6 1.4 47 1-47 66-112 (144)
88 KOG4206 Spliceosomal protein s 98.9 4.7E-09 1E-13 80.3 8.0 79 82-163 7-91 (221)
89 KOG4207 Predicted splicing fac 98.9 6.7E-10 1.4E-14 83.7 2.0 51 1-51 45-95 (256)
90 COG0724 RNA-binding proteins ( 98.8 8.9E-09 1.9E-13 82.6 6.9 125 1-132 147-273 (306)
91 smart00361 RRM_1 RNA recogniti 98.8 1.4E-09 2.9E-14 70.0 1.4 41 2-42 26-68 (70)
92 KOG0111 Cyclophilin-type pepti 98.8 1.4E-09 3E-14 82.8 1.5 49 1-49 42-90 (298)
93 KOG4209 Splicing factor RNPS1, 98.8 4.3E-08 9.4E-13 77.2 9.0 83 80-162 97-180 (231)
94 KOG0533 RRM motif-containing p 98.8 2.1E-07 4.6E-12 73.3 12.8 82 82-164 81-164 (243)
95 KOG1190 Polypyrimidine tract-b 98.8 4.7E-08 1E-12 80.7 8.9 143 13-161 337-490 (492)
96 KOG1995 Conserved Zn-finger pr 98.7 6.7E-08 1.5E-12 78.7 8.9 84 81-164 63-156 (351)
97 KOG0106 Alternative splicing f 98.7 2E-08 4.2E-13 77.5 5.1 70 85-162 2-73 (216)
98 KOG0126 Predicted RNA-binding 98.6 5.9E-09 1.3E-13 77.2 0.2 44 1-44 67-110 (219)
99 KOG4208 Nucleolar RNA-binding 98.6 1.2E-08 2.6E-13 77.0 1.2 48 2-49 83-130 (214)
100 KOG1548 Transcription elongati 98.6 2.9E-07 6.3E-12 74.6 8.3 79 81-160 131-219 (382)
101 KOG0149 Predicted RNA-binding 98.6 3.9E-08 8.5E-13 75.7 3.1 46 1-47 44-89 (247)
102 KOG1457 RNA binding protein (c 98.6 1.1E-06 2.4E-11 67.3 10.5 87 81-167 31-123 (284)
103 KOG1548 Transcription elongati 98.6 4.5E-07 9.8E-12 73.5 8.8 147 8-161 180-351 (382)
104 KOG4660 Protein Mei2, essentia 98.5 1.3E-07 2.7E-12 81.0 4.9 71 80-155 71-143 (549)
105 KOG0151 Predicted splicing reg 98.5 5.1E-07 1.1E-11 79.3 8.1 83 78-160 168-255 (877)
106 KOG0128 RNA-binding protein SA 98.5 1.5E-07 3.3E-12 84.0 4.6 110 5-161 703-814 (881)
107 KOG0113 U1 small nuclear ribon 98.4 5.7E-08 1.2E-12 77.2 1.2 51 1-51 133-183 (335)
108 PF04059 RRM_2: RNA recognitio 98.4 3E-06 6.5E-11 57.5 8.4 76 85-160 2-85 (97)
109 KOG4849 mRNA cleavage factor I 98.4 2.2E-06 4.9E-11 69.7 9.0 77 81-157 77-157 (498)
110 KOG4454 RNA binding protein (R 98.4 1.8E-07 3.9E-12 71.4 2.4 77 80-158 5-83 (267)
111 KOG1456 Heterogeneous nuclear 98.3 6E-05 1.3E-09 62.1 15.9 126 11-163 67-200 (494)
112 KOG1456 Heterogeneous nuclear 98.3 7.3E-06 1.6E-10 67.3 10.1 135 11-147 325-468 (494)
113 smart00360 RRM RNA recognition 98.2 5.8E-07 1.2E-11 56.6 2.2 42 2-43 29-70 (71)
114 KOG1190 Polypyrimidine tract-b 98.2 7.4E-06 1.6E-10 68.0 9.0 73 84-161 297-372 (492)
115 KOG0108 mRNA cleavage and poly 98.2 9.4E-07 2E-11 75.5 3.2 51 1-51 50-100 (435)
116 KOG0226 RNA-binding proteins [ 98.2 6.3E-07 1.4E-11 69.9 1.8 48 1-48 222-269 (290)
117 PF00076 RRM_1: RNA recognitio 98.2 2E-07 4.3E-12 59.3 -1.1 36 6-41 34-69 (70)
118 KOG0130 RNA-binding protein RB 98.2 6.2E-07 1.3E-11 63.4 0.9 44 3-46 106-149 (170)
119 KOG1365 RNA-binding protein Fu 98.1 7.7E-06 1.7E-10 67.4 7.2 136 8-158 99-239 (508)
120 PLN03213 repressor of silencin 98.1 7.7E-07 1.7E-11 75.4 1.0 43 5-49 44-88 (759)
121 PF13893 RRM_5: RNA recognitio 98.1 3.7E-07 8.1E-12 55.8 -0.7 36 11-46 21-56 (56)
122 KOG0129 Predicted RNA-binding 98.1 2E-05 4.4E-10 67.3 9.3 65 80-144 366-431 (520)
123 KOG4454 RNA binding protein (R 98.1 1.2E-06 2.5E-11 67.0 0.9 99 1-144 41-143 (267)
124 PF14259 RRM_6: RNA recognitio 98.0 8.2E-07 1.8E-11 56.7 -0.4 39 2-41 31-69 (70)
125 KOG0125 Ataxin 2-binding prote 98.0 1.5E-06 3.3E-11 70.1 0.8 42 7-48 132-173 (376)
126 PF11608 Limkain-b1: Limkain b 98.0 3.2E-05 7E-10 50.4 6.6 66 85-160 3-75 (90)
127 KOG0121 Nuclear cap-binding pr 98.0 4.7E-06 1E-10 58.5 2.2 44 3-46 70-113 (153)
128 KOG4307 RNA binding protein RB 97.9 3E-05 6.5E-10 68.4 7.2 154 3-158 344-510 (944)
129 PF08777 RRM_3: RNA binding mo 97.9 1.7E-05 3.7E-10 55.0 4.2 68 85-158 2-76 (105)
130 KOG0415 Predicted peptidyl pro 97.8 4.8E-06 1E-10 67.9 0.7 51 1-51 271-321 (479)
131 PF14605 Nup35_RRM_2: Nup53/35 97.8 9.4E-05 2E-09 44.5 5.6 52 85-143 2-53 (53)
132 smart00362 RRM_2 RNA recogniti 97.8 1.2E-05 2.5E-10 50.7 1.7 35 8-42 36-70 (72)
133 KOG0107 Alternative splicing f 97.7 9.2E-06 2E-10 60.1 0.7 38 9-46 45-82 (195)
134 PLN03120 nucleic acid binding 97.6 2.9E-05 6.3E-10 61.7 1.9 42 1-46 36-77 (260)
135 cd00590 RRM RRM (RNA recogniti 97.6 3.6E-05 7.8E-10 48.6 1.5 40 3-43 33-72 (74)
136 KOG0112 Large RNA-binding prot 97.5 0.00017 3.6E-09 65.5 5.4 117 10-163 412-532 (975)
137 KOG0115 RNA-binding protein p5 97.5 0.0001 2.2E-09 57.9 3.4 74 85-159 32-111 (275)
138 KOG4307 RNA binding protein RB 97.5 0.00039 8.5E-09 61.7 7.4 73 85-158 868-943 (944)
139 KOG1855 Predicted RNA-binding 97.4 0.00013 2.8E-09 61.2 3.1 67 80-146 227-306 (484)
140 KOG0128 RNA-binding protein SA 97.3 1.3E-05 2.8E-10 72.1 -4.2 112 13-144 616-727 (881)
141 KOG2314 Translation initiation 97.3 0.0018 3.9E-08 56.3 8.7 77 81-158 55-140 (698)
142 KOG2193 IGF-II mRNA-binding pr 97.2 2.7E-05 6E-10 65.0 -2.3 114 11-159 37-154 (584)
143 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0023 5.1E-08 43.7 7.4 77 83-160 5-90 (100)
144 PLN03121 nucleic acid binding 97.2 0.00017 3.7E-09 56.6 2.0 40 1-44 37-76 (243)
145 KOG0129 Predicted RNA-binding 97.2 0.0025 5.5E-08 54.8 9.0 64 80-144 255-324 (520)
146 KOG0114 Predicted RNA-binding 97.2 0.00014 3E-09 49.4 1.1 42 6-47 52-93 (124)
147 PF08675 RNA_bind: RNA binding 97.2 0.0036 7.9E-08 40.9 7.4 54 84-146 9-62 (87)
148 PF04059 RRM_2: RNA recognitio 97.1 0.00018 3.8E-09 48.9 1.0 37 1-37 35-71 (97)
149 KOG4209 Splicing factor RNPS1, 97.0 0.00048 1E-08 54.4 3.0 43 1-44 133-175 (231)
150 COG5175 MOT2 Transcriptional r 97.0 0.0021 4.7E-08 52.5 6.4 81 81-161 111-202 (480)
151 KOG2193 IGF-II mRNA-binding pr 96.7 0.0012 2.7E-08 55.4 2.6 77 85-167 2-81 (584)
152 PF08952 DUF1866: Domain of un 96.6 0.012 2.6E-07 42.8 7.0 73 82-162 25-107 (146)
153 PF10309 DUF2414: Protein of u 96.6 0.02 4.3E-07 35.4 6.9 55 84-146 5-62 (62)
154 KOG4676 Splicing factor, argin 96.5 0.0036 7.8E-08 52.2 4.4 74 85-158 8-85 (479)
155 KOG4661 Hsp27-ERE-TATA-binding 96.1 0.003 6.4E-08 55.1 1.6 47 2-48 438-484 (940)
156 KOG3152 TBP-binding protein, a 95.9 0.0071 1.5E-07 47.7 3.0 71 83-153 73-157 (278)
157 KOG2416 Acinus (induces apopto 95.8 0.012 2.7E-07 51.6 4.1 75 80-160 440-520 (718)
158 PF15023 DUF4523: Protein of u 95.7 0.073 1.6E-06 38.5 7.3 74 80-160 82-160 (166)
159 KOG2202 U2 snRNP splicing fact 95.7 0.005 1.1E-07 48.6 1.3 60 100-160 84-146 (260)
160 PF11608 Limkain-b1: Limkain b 95.5 0.0055 1.2E-07 40.1 0.8 38 10-47 38-75 (90)
161 KOG1996 mRNA splicing factor [ 95.5 0.057 1.2E-06 43.6 6.5 61 99-159 301-364 (378)
162 KOG0132 RNA polymerase II C-te 95.1 0.0086 1.9E-07 54.1 1.2 43 9-51 455-497 (894)
163 KOG4676 Splicing factor, argin 95.0 0.012 2.5E-07 49.2 1.4 133 8-145 49-208 (479)
164 KOG2314 Translation initiation 94.9 0.02 4.4E-07 50.0 2.7 38 1-39 96-133 (698)
165 PRK11634 ATP-dependent RNA hel 94.6 0.52 1.1E-05 43.1 11.2 67 85-161 487-562 (629)
166 KOG2135 Proteins containing th 94.6 0.024 5.2E-07 48.5 2.3 70 87-162 375-446 (526)
167 KOG2591 c-Mpl binding protein, 94.3 0.16 3.5E-06 44.5 6.7 69 82-157 173-247 (684)
168 KOG0153 Predicted RNA-binding 93.9 0.019 4.2E-07 47.2 0.5 39 10-48 263-302 (377)
169 KOG4660 Protein Mei2, essentia 93.8 0.04 8.6E-07 48.1 2.2 141 4-160 105-248 (549)
170 KOG1995 Conserved Zn-finger pr 93.8 0.048 1E-06 45.2 2.4 50 2-51 107-156 (351)
171 KOG0112 Large RNA-binding prot 93.7 0.016 3.5E-07 53.2 -0.5 63 81-144 369-431 (975)
172 KOG2068 MOT2 transcription fac 92.8 0.052 1.1E-06 44.6 1.3 80 82-161 75-162 (327)
173 PF03467 Smg4_UPF3: Smg-4/UPF3 92.7 0.29 6.2E-06 37.2 5.2 78 83-160 6-96 (176)
174 KOG2253 U1 snRNP complex, subu 90.2 0.25 5.5E-06 44.2 2.9 70 80-158 36-107 (668)
175 PF07292 NID: Nmi/IFP 35 domai 90.2 0.084 1.8E-06 35.1 -0.1 25 81-105 49-73 (88)
176 PF03880 DbpA: DbpA RNA bindin 89.7 2.7 5.9E-05 26.8 6.8 57 94-159 11-74 (74)
177 PF04847 Calcipressin: Calcipr 89.7 1.5 3.2E-05 33.5 6.4 60 97-162 8-71 (184)
178 smart00596 PRE_C2HC PRE_C2HC d 89.5 0.9 2E-05 28.6 4.2 62 99-161 2-64 (69)
179 KOG4574 RNA-binding protein (c 89.2 0.31 6.8E-06 44.9 2.7 74 87-166 301-378 (1007)
180 PF07530 PRE_C2HC: Associated 89.1 1.3 2.8E-05 28.0 4.7 63 99-162 2-65 (68)
181 KOG0921 Dosage compensation co 88.7 0.85 1.9E-05 42.8 5.1 16 6-21 897-912 (1282)
182 KOG4285 Mitotic phosphoprotein 88.4 3.2 6.9E-05 34.0 7.6 73 84-163 197-271 (350)
183 KOG0533 RRM motif-containing p 88.3 0.26 5.7E-06 39.2 1.5 40 7-46 120-159 (243)
184 KOG2202 U2 snRNP splicing fact 88.0 0.15 3.2E-06 40.5 -0.1 38 9-46 108-145 (260)
185 KOG4210 Nuclear localization s 87.2 0.67 1.5E-05 38.0 3.3 62 83-144 87-148 (285)
186 KOG0151 Predicted splicing reg 84.8 0.45 9.8E-06 43.1 1.2 40 8-47 216-255 (877)
187 PF07576 BRAP2: BRCA1-associat 83.7 12 0.00027 26.0 10.2 60 84-145 13-73 (110)
188 PF14605 Nup35_RRM_2: Nup53/35 81.2 1.7 3.6E-05 25.9 2.4 19 10-28 35-53 (53)
189 KOG1996 mRNA splicing factor [ 78.8 1.2 2.5E-05 36.3 1.5 33 14-46 332-364 (378)
190 KOG4483 Uncharacterized conser 76.3 7 0.00015 33.4 5.3 59 82-147 389-448 (528)
191 PF02714 DUF221: Domain of unk 76.0 2.7 5.8E-05 34.9 3.0 20 14-33 1-20 (325)
192 KOG0116 RasGAP SH3 binding pro 72.8 2.1 4.6E-05 37.0 1.6 35 8-43 327-361 (419)
193 PF03468 XS: XS domain; Inter 71.2 5.1 0.00011 28.2 3.0 48 86-136 10-66 (116)
194 KOG0804 Cytoplasmic Zn-finger 69.5 31 0.00067 30.1 7.7 60 84-145 74-134 (493)
195 PF02714 DUF221: Domain of unk 69.4 5.5 0.00012 33.0 3.4 34 129-162 1-34 (325)
196 KOG4849 mRNA cleavage factor I 68.3 16 0.00034 30.7 5.6 40 4-43 117-156 (498)
197 COG5175 MOT2 Transcriptional r 66.7 2.9 6.3E-05 34.7 1.1 33 15-47 169-201 (480)
198 PF14111 DUF4283: Domain of un 66.3 7.8 0.00017 28.1 3.3 85 10-118 54-139 (153)
199 KOG4410 5-formyltetrahydrofola 64.6 14 0.00031 30.1 4.5 47 84-136 330-377 (396)
200 PF11767 SET_assoc: Histone ly 62.7 35 0.00076 21.3 6.0 51 95-154 11-63 (66)
201 PF10567 Nab6_mRNP_bdg: RNA-re 62.7 21 0.00047 29.2 5.2 80 81-160 12-106 (309)
202 PF15513 DUF4651: Domain of un 55.1 35 0.00077 21.0 4.1 18 99-116 9-26 (62)
203 KOG4008 rRNA processing protei 55.0 9.3 0.0002 30.2 2.0 35 80-114 36-70 (261)
204 PF07292 NID: Nmi/IFP 35 domai 53.1 25 0.00055 23.4 3.6 29 129-157 1-32 (88)
205 PF08777 RRM_3: RNA binding mo 52.7 9.2 0.0002 26.3 1.5 20 13-32 39-58 (105)
206 KOG4019 Calcineurin-mediated s 52.6 14 0.0003 28.1 2.5 75 84-164 10-92 (193)
207 PF08952 DUF1866: Domain of un 50.4 4.3 9.3E-05 29.7 -0.5 33 12-45 71-103 (146)
208 KOG2416 Acinus (induces apopto 49.0 13 0.00029 33.4 2.2 42 11-52 481-525 (718)
209 KOG2891 Surface glycoprotein [ 43.0 30 0.00065 28.2 3.2 36 83-118 148-195 (445)
210 PRK14548 50S ribosomal protein 43.0 96 0.0021 20.4 5.6 56 86-144 22-79 (84)
211 PF09707 Cas_Cas2CT1978: CRISP 40.9 65 0.0014 21.3 4.1 50 82-134 23-72 (86)
212 TIGR03636 L23_arch archaeal ri 39.4 1E+02 0.0023 19.8 5.6 55 86-143 15-71 (77)
213 PF03439 Spt5-NGN: Early trans 36.4 43 0.00094 21.8 2.7 27 9-35 42-68 (84)
214 KOG3424 40S ribosomal protein 36.3 1.5E+02 0.0033 20.9 5.4 47 95-142 34-85 (132)
215 KOG2068 MOT2 transcription fac 33.9 9.2 0.0002 31.8 -1.0 34 14-47 128-161 (327)
216 PRK10590 ATP-dependent RNA hel 33.3 2.5E+02 0.0054 24.6 7.8 8 126-133 342-349 (456)
217 PF08206 OB_RNB: Ribonuclease 33.1 30 0.00066 20.7 1.5 12 9-20 6-17 (58)
218 KOG2318 Uncharacterized conser 33.1 78 0.0017 28.7 4.4 38 81-118 171-213 (650)
219 COG4907 Predicted membrane pro 30.7 54 0.0012 28.9 3.0 10 100-109 490-499 (595)
220 PRK15464 cold shock-like prote 29.1 29 0.00062 22.0 0.9 12 9-20 14-25 (70)
221 PF11411 DNA_ligase_IV: DNA li 28.7 47 0.001 18.1 1.5 15 95-109 20-34 (36)
222 PF12091 DUF3567: Protein of u 28.4 95 0.0021 20.5 3.2 16 95-110 61-76 (85)
223 PRK14998 cold shock-like prote 28.1 35 0.00076 21.7 1.2 12 9-20 11-22 (73)
224 PRK09937 stationary phase/star 27.9 36 0.00077 21.8 1.2 11 9-19 11-21 (74)
225 PRK15463 cold shock-like prote 27.4 33 0.00072 21.6 1.0 12 9-20 14-25 (70)
226 COG3254 Uncharacterized conser 27.2 2.1E+02 0.0046 19.7 4.8 43 98-143 26-68 (105)
227 COG0030 KsgA Dimethyladenosine 27.2 98 0.0021 25.1 3.8 32 84-115 95-126 (259)
228 KOG2591 c-Mpl binding protein, 26.7 14 0.00029 33.1 -1.2 27 15-41 216-244 (684)
229 PF03108 DBD_Tnp_Mut: MuDR fam 26.3 75 0.0016 19.4 2.5 29 132-160 9-37 (67)
230 PRK09507 cspE cold shock prote 26.3 34 0.00075 21.4 0.9 12 9-20 13-24 (69)
231 PRK11558 putative ssRNA endonu 26.1 1.3E+02 0.0029 20.4 3.7 52 82-136 25-76 (97)
232 PRK10943 cold shock-like prote 25.7 35 0.00076 21.4 0.8 12 9-20 13-24 (69)
233 PF04026 SpoVG: SpoVG; InterP 24.9 1.5E+02 0.0031 19.5 3.7 26 110-135 2-27 (84)
234 TIGR02381 cspD cold shock doma 24.5 45 0.00098 20.8 1.2 12 9-20 11-22 (68)
235 PHA01632 hypothetical protein 24.1 87 0.0019 18.8 2.2 21 87-107 19-39 (64)
236 PRK09890 cold shock protein Cs 23.7 41 0.00089 21.1 0.9 11 9-19 14-24 (70)
237 PRK10354 RNA chaperone/anti-te 23.7 41 0.00089 21.1 0.9 10 10-19 15-24 (70)
238 COG1512 Beta-propeller domains 23.7 1.3E+02 0.0028 24.6 3.9 8 91-98 119-126 (271)
239 COG1512 Beta-propeller domains 22.3 1.5E+02 0.0032 24.2 4.0 7 101-107 83-89 (271)
240 PF04847 Calcipressin: Calcipr 21.4 43 0.00092 25.6 0.7 35 12-46 32-68 (184)
241 TIGR00110 ilvD dihydroxy-acid 21.1 1.8E+02 0.0038 26.4 4.5 37 125-162 382-418 (535)
242 PRK12448 dihydroxy-acid dehydr 21.0 1.7E+02 0.0037 26.9 4.5 38 125-163 447-484 (615)
243 KOG1855 Predicted RNA-binding 20.8 43 0.00094 29.0 0.7 25 11-35 286-310 (484)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=9.8e-31 Score=217.11 Aligned_cols=136 Identities=20% Similarity=0.294 Sum_probs=118.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.|+++||||||+|.++++|++||+.|++..+.++.|.|.++.... .
T Consensus 139 i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~-----------------------------~ 189 (346)
T TIGR01659 139 IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG-----------------------------E 189 (346)
T ss_pred EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc-----------------------------c
Confidence 46899999999999999999999999999999999999999887653210 1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC--eEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~i~v 156 (220)
.....+|||+|||+.+++++|+++|++||.|+.|.|+.|+.+++++|||||+|.+.++|++||+.++ .+.+ ++|.|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 2234689999999999999999999999999999999999999999999999999999999998666 4444 79999
Q ss_pred EeccCCCCC
Q 027706 157 DSATPLDDA 165 (220)
Q Consensus 157 ~~a~~~~~~ 165 (220)
.++......
T Consensus 270 ~~a~~~~~~ 278 (346)
T TIGR01659 270 RLAEEHGKA 278 (346)
T ss_pred EECCccccc
Confidence 999876443
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.2e-31 Score=203.29 Aligned_cols=147 Identities=24% Similarity=0.322 Sum_probs=122.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
||||.+|++|||||||.|.+.++|++||..|++.+|.+|.|+.+++..|+..... .|......-..+
T Consensus 94 virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~-------------~~ltfdeV~NQs 160 (321)
T KOG0148|consen 94 VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNG-------------KPLTFDEVYNQS 160 (321)
T ss_pred EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCC-------------CCccHHHHhccC
Confidence 6899999999999999999999999999999999999999999999877621110 011111111124
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+||+.-++|++|++.|++||.|.+|+|..+ +||+||.|+++|+|..||..+| +|.|+.|+|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 567799999999999999999999999999999999886 5799999999999999997655 99999999999
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
.+......
T Consensus 235 GKe~~~~~ 242 (321)
T KOG0148|consen 235 GKEGDDGI 242 (321)
T ss_pred cccCCCCC
Confidence 88665543
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=9.8e-27 Score=203.13 Aligned_cols=146 Identities=18% Similarity=0.341 Sum_probs=120.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+|||||||+|.+.++|++||+.|++..+.++.|.|+......... +.. ......
T Consensus 139 I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~----------------~~~--~~~~~~ 200 (612)
T TIGR01645 139 MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ----------------PII--DMVQEE 200 (612)
T ss_pred EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccc----------------ccc--cccccc
Confidence 56899999999999999999999999999999999999999876321110000 000 000001
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||+++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+||..++ +|.|+.|+|.+
T Consensus 201 ~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 201 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred ccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 2345799999999999999999999999999999999999999999999999999999999998666 89999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
+.++..
T Consensus 281 Ai~pP~ 286 (612)
T TIGR01645 281 CVTPPD 286 (612)
T ss_pred cCCCcc
Confidence 986543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=6.4e-26 Score=190.49 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=118.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCccc--ccCCCCCCCccchhhhh---hhhcccCCCCCC--------
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVG--RMSHGGYGAYNAYISAA---TRYAALGAPTLY-------- 67 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~--r~i~v~~~~~~~~~~~~---~r~~~~~~~~~~-------- 67 (220)
|++|..++.++|||||+|.+.++|++||+.|++..+.+ ++|.+.++......... ........+...
T Consensus 121 ~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T TIGR01661 121 ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTIL 200 (352)
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccc
Confidence 35678889999999999999999999999999988665 44566555432211000 000000000000
Q ss_pred -------------------------------------------CCCCCCC--------C-CCCCCCCCCCEEEEcCCCCC
Q 027706 68 -------------------------------------------DHPGSFY--------G-RGESSQRIGKKIFVGRLPQE 95 (220)
Q Consensus 68 -------------------------------------------~~~~~~~--------~-~~~~~~~~~~~l~v~nlp~~ 95 (220)
..+.... . ........+.+|||+|||++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 280 (352)
T TIGR01661 201 TAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD 280 (352)
T ss_pred cccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCC
Confidence 0000000 0 00001233457999999999
Q ss_pred CCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCCC
Q 027706 96 ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDD 164 (220)
Q Consensus 96 ~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~~ 164 (220)
+++++|.++|++||.|.+++|+.|+.|+.++|||||+|.+.++|.+||..++ .|.|+.|+|.|+.++..
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999999999999999999999999998665 89999999999988764
No 5
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.3e-26 Score=186.10 Aligned_cols=139 Identities=26% Similarity=0.419 Sum_probs=115.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCC-cccc--cCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFR-PVGR--MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG 77 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~-~~~r--~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 77 (220)
||||+.|+.|+|||||.|.+.++|++|+..+|+.+ +.+- +|.|.|+... +.
T Consensus 66 l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E-------~e------------------- 119 (510)
T KOG0144|consen 66 LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGE-------RE------------------- 119 (510)
T ss_pred eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchh-------hh-------------------
Confidence 68999999999999999999999999999999877 4443 4444444110 00
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC---cc--CCe
Q 027706 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EI--CGQ 152 (220)
Q Consensus 78 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~---~i--~g~ 152 (220)
.-....+|||+.|+..++|.+++++|++||.|++|.|++|. .+.+||||||.|.+.+.|..||+.+| .+ +..
T Consensus 120 --r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~ 196 (510)
T KOG0144|consen 120 --RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQ 196 (510)
T ss_pred --ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCC
Confidence 11236889999999999999999999999999999999994 58899999999999999999998776 44 567
Q ss_pred EEEEEeccCCCCCCCC
Q 027706 153 QVAIDSATPLDDAGPS 168 (220)
Q Consensus 153 ~i~v~~a~~~~~~~~~ 168 (220)
+|.|+||.+++++...
T Consensus 197 PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 197 PLVVKFADTQKDKDGK 212 (510)
T ss_pred ceEEEecccCCCchHH
Confidence 9999999988776543
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.4e-24 Score=189.32 Aligned_cols=130 Identities=22% Similarity=0.311 Sum_probs=104.7
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCC--CcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDF--RPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 81 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~--~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
+..+++++|||||+|.+.++|+.|++.|+.. .+.++.|.|.++..+.... +...
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d------------------------~~~~ 230 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD------------------------EDVM 230 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc------------------------cccc
Confidence 4456789999999999999999999877643 3678888876664321110 0023
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcc--CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...++|||+||++++++++|+++|++| |.|+.|.+++ +||||+|.+.++|++||+.++ +|.|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999998754 499999999999999997555 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
|++|+...
T Consensus 303 ~Akp~~~~ 310 (578)
T TIGR01648 303 LAKPVDKK 310 (578)
T ss_pred EccCCCcc
Confidence 99886543
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.4e-25 Score=180.93 Aligned_cols=159 Identities=23% Similarity=0.374 Sum_probs=115.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCC-cccccCCCCCCCccch--------------hhhh-hhh------
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFR-PVGRMSHGGYGAYNAY--------------ISAA-TRY------ 58 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~-~~~r~i~v~~~~~~~~--------------~~~~-~r~------ 58 (220)
|.+|+.+|.+||||||+|.+.++|++||+.+|+.. -.++.|.|+.+..+.. +... .+.
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvd 194 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVD 194 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeE
Confidence 56899999999999999999999999999999886 4667776664421111 0000 000
Q ss_pred --------------------------------ccc-CCCCCCCCCCCCCCC------CCCCCCCCCEEEEcCCCCCCCHH
Q 027706 59 --------------------------------AAL-GAPTLYDHPGSFYGR------GESSQRIGKKIFVGRLPQEATAE 99 (220)
Q Consensus 59 --------------------------------~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~l~v~nlp~~~~~~ 99 (220)
+.+ +.-....+.....++ ++......+.|||+||+.++||+
T Consensus 195 Vivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE 274 (506)
T KOG0117|consen 195 VIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEE 274 (506)
T ss_pred EEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHH
Confidence 000 000000111111111 11234556889999999999999
Q ss_pred HHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCCCCCC
Q 027706 100 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAGP 167 (220)
Q Consensus 100 ~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~~~~~ 167 (220)
.|+++|+.||.|+.|+.++| ||||.|.+.++|.+|+++++ +|+|..|.|.+|+|..+.+.
T Consensus 275 ~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred HHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 99999999999999998877 99999999999999998666 99999999999999766544
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.5e-26 Score=174.14 Aligned_cols=135 Identities=21% Similarity=0.382 Sum_probs=120.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
||||+.||.|.||+||-|.+++||++||..+++.++..+.|+|.|+.+ +..
T Consensus 73 LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP-----------------------------Ss~ 123 (360)
T KOG0145|consen 73 LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP-----------------------------SSD 123 (360)
T ss_pred eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC-----------------------------Chh
Confidence 689999999999999999999999999999999999999999877731 114
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC----ccCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~i~v 156 (220)
.....+|||.+||..+|..+|+++|++||.|..-+|+.|..||.++|.+||.|+..++|+.||+.++ .-+-.+|.|
T Consensus 124 ~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItV 203 (360)
T KOG0145|consen 124 SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITV 203 (360)
T ss_pred hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEE
Confidence 5667899999999999999999999999999999999999999999999999999999999998554 335679999
Q ss_pred EeccCCCC
Q 027706 157 DSATPLDD 164 (220)
Q Consensus 157 ~~a~~~~~ 164 (220)
++|.....
T Consensus 204 KFannPsq 211 (360)
T KOG0145|consen 204 KFANNPSQ 211 (360)
T ss_pred EecCCccc
Confidence 99976543
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.5e-24 Score=186.78 Aligned_cols=143 Identities=25% Similarity=0.388 Sum_probs=116.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.|++++|||||+|.+.++|++|| .|++..+.+++|.|.++......... . .. ..+. .
T Consensus 121 i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~--~---~~----~~~~--------~ 182 (457)
T TIGR01622 121 CIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAK--A---AT----HQPG--------D 182 (457)
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhh--c---cc----ccCC--------C
Confidence 5789999999999999999999999999 58999999999987654321111100 0 00 0000 1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|+..++ .|.|++|.|.+
T Consensus 183 ~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 183 IPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 1236899999999999999999999999999999999999999999999999999999999997655 89999999999
Q ss_pred ccC
Q 027706 159 ATP 161 (220)
Q Consensus 159 a~~ 161 (220)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 873
No 10
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2.1e-25 Score=163.19 Aligned_cols=137 Identities=25% Similarity=0.430 Sum_probs=119.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
||+|+.|..++|||||+|.++|+|+.||+.|+..++.+++|+|+.+.. ....
T Consensus 41 iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~----------------------------~~~n 92 (203)
T KOG0131|consen 41 IPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA----------------------------HQKN 92 (203)
T ss_pred cchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc----------------------------cccc
Confidence 799999999999999999999999999999998889999998764420 0013
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEE-EeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...+.+|||+||.++++|..|.+.|+.||.|... .|+++..||.++||+||.|.+.+.+.+|+..++ .++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 4556899999999999999999999999988764 899999999999999999999999999997554 7899999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++..+...
T Consensus 173 ya~k~~~k 180 (203)
T KOG0131|consen 173 YAFKKDTK 180 (203)
T ss_pred EEEecCCC
Confidence 99866544
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.91 E-value=3.2e-24 Score=180.17 Aligned_cols=134 Identities=21% Similarity=0.383 Sum_probs=116.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+|+|||||+|.++++|++||+.|++..+.++.|.|.++.... .
T Consensus 35 i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~-----------------------------~ 85 (352)
T TIGR01661 35 LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS-----------------------------D 85 (352)
T ss_pred EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc-----------------------------c
Confidence 46899999999999999999999999999999999999999887653210 1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC--eEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~i~v 156 (220)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|+..++ .+.+ .+|.|
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 2235689999999999999999999999999999999998889999999999999999999997655 5544 68899
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
.++..+.
T Consensus 166 ~~a~~~~ 172 (352)
T TIGR01661 166 KFANNPS 172 (352)
T ss_pred EECCCCC
Confidence 9987654
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=7.1e-23 Score=179.93 Aligned_cols=158 Identities=12% Similarity=0.136 Sum_probs=112.6
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI 83 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (220)
+..+++++|||||+|.+.++|++|| .|++..+.++.|.|....................+...................
T Consensus 216 ~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (509)
T TIGR01642 216 SVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDS 294 (509)
T ss_pred EEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCC
Confidence 3345688999999999999999999 699988999888774321110000000000000000000000000011112345
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~ 161 (220)
..+|||+|||+.+++++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..++ .|.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 6899999999999999999999999999999999999999999999999999999999997555 89999999999865
Q ss_pred C
Q 027706 162 L 162 (220)
Q Consensus 162 ~ 162 (220)
.
T Consensus 375 ~ 375 (509)
T TIGR01642 375 G 375 (509)
T ss_pred C
Confidence 4
No 13
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.90 E-value=4.8e-22 Score=145.91 Aligned_cols=86 Identities=29% Similarity=0.506 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 157 (220)
.....++|||+|||++++|++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.+ +.|.|+.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4566789999999999999999999999999999999999999999999999999999999999754 48999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99865443
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=3.5e-23 Score=183.86 Aligned_cols=150 Identities=26% Similarity=0.336 Sum_probs=118.8
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcc----cccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPV----GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG 77 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~----~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 77 (220)
++| .+++++|||||+|.+.++|.+|++.+++..+. ++.+.+..+..+.......+...... ...
T Consensus 211 ~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~-----------~~~ 278 (562)
T TIGR01628 211 MKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEEL-----------QQE 278 (562)
T ss_pred EEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhh-----------hhh
Confidence 344 46899999999999999999999999999888 88888876654433321111100000 000
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 78 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
........+|||+||++++++++|+++|+.||.|.+|+|+.| .++.++|||||+|.+.++|.+|+..+| .+.|++|.
T Consensus 279 ~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~ 357 (562)
T TIGR01628 279 RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY 357 (562)
T ss_pred hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence 012345678999999999999999999999999999999999 789999999999999999999997655 89999999
Q ss_pred EEeccCCCC
Q 027706 156 IDSATPLDD 164 (220)
Q Consensus 156 v~~a~~~~~ 164 (220)
|.+|.++..
T Consensus 358 V~~a~~k~~ 366 (562)
T TIGR01628 358 VALAQRKEQ 366 (562)
T ss_pred EEeccCcHH
Confidence 999987653
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=7.4e-23 Score=181.75 Aligned_cols=137 Identities=22% Similarity=0.327 Sum_probs=116.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.|++|+|||||+|.+.++|++||+.++...+.++.|.|.|+...... .
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~---------------------------~ 84 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL---------------------------R 84 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc---------------------------c
Confidence 4689999999999999999999999999999998899999988765321100 1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||.++++++|+++|+.||.|.+|.|+.+ .+++++|||||+|.+.++|.+|+..++ .+.++.|.|..
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~ 163 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGR 163 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEec
Confidence 122457999999999999999999999999999999988 478899999999999999999997655 78899999987
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
..++.++
T Consensus 164 ~~~~~~~ 170 (562)
T TIGR01628 164 FIKKHER 170 (562)
T ss_pred ccccccc
Confidence 7665444
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=4.4e-22 Score=166.91 Aligned_cols=159 Identities=26% Similarity=0.414 Sum_probs=124.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhh--cccCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY--AALGAPTLYDHPGSFYGRGE 78 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~ 78 (220)
|+.++.++.+|||+||+|+=+||+++||......++.++.|.|..+............ .....+.....|.. .
T Consensus 37 vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k-----~ 111 (678)
T KOG0127|consen 37 VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTK-----A 111 (678)
T ss_pred EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcch-----h
Confidence 4678889999999999999999999999999999999999999887655443321110 00111111111111 0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEE
Q 027706 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAI 156 (220)
Q Consensus 79 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~i~v 156 (220)
....+..+|.|+||||.+.+.+|+.+|+.||.|.+|.|++...++.+ |||||+|....+|..||+ +++.|.|++|-|
T Consensus 112 ~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAV 190 (678)
T KOG0127|consen 112 KVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAV 190 (678)
T ss_pred hccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEE
Confidence 12334789999999999999999999999999999999987765555 999999999999999998 555999999999
Q ss_pred EeccCCCCC
Q 027706 157 DSATPLDDA 165 (220)
Q Consensus 157 ~~a~~~~~~ 165 (220)
.||.++..-
T Consensus 191 DWAV~Kd~y 199 (678)
T KOG0127|consen 191 DWAVDKDTY 199 (678)
T ss_pred eeecccccc
Confidence 999987643
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=7.2e-22 Score=172.42 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=102.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcc-cccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPV-GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGES 79 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~-~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 79 (220)
|++| .||+|||||||+|.+.++|++||+.|++..+. ++.|.|+.
T Consensus 90 l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~---------------------------------- 134 (578)
T TIGR01648 90 LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI---------------------------------- 134 (578)
T ss_pred EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc----------------------------------
Confidence 5688 88999999999999999999999999988754 55554321
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCc-EEEE-EeecCCCCCCccceEEEEECCHHHHHHHHhcCC----ccCCeE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQ 153 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~ 153 (220)
....++|||+|||+++++++|.++|++++. +.++ .+.....+++++|||||+|.++++|.+|+..++ .+.|+.
T Consensus 135 -S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 135 -SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred -cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 123578999999999999999999999864 3333 333334557789999999999999999987543 578999
Q ss_pred EEEEeccCCC
Q 027706 154 VAIDSATPLD 163 (220)
Q Consensus 154 i~v~~a~~~~ 163 (220)
|.|.|+.++.
T Consensus 214 I~VdwA~p~~ 223 (578)
T TIGR01648 214 IAVDWAEPEE 223 (578)
T ss_pred EEEEeecccc
Confidence 9999998764
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=9.4e-21 Score=146.10 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=120.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccc--cCCCCCCCccchhhhhhhh-cccCCCCC-CC--------
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGR--MSHGGYGAYNAYISAATRY-AALGAPTL-YD-------- 68 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r--~i~v~~~~~~~~~~~~~r~-~~~~~~~~-~~-------- 68 (220)
|..|..||.|||.+||.|...++|+.||..+++.+..+. +|.|.|++.....+...-. .....|.. ..
T Consensus 159 iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~ 238 (360)
T KOG0145|consen 159 ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQ 238 (360)
T ss_pred hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhh
Confidence 457899999999999999999999999999999995554 5667777544332221110 00000000 00
Q ss_pred -----------------CCCCCC------C-CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCC
Q 027706 69 -----------------HPGSFY------G-RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG 124 (220)
Q Consensus 69 -----------------~~~~~~------~-~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~ 124 (220)
.|-... . .-+.......+|||-||.++++|.-|.++|.+||.|..++|++|..|.+
T Consensus 239 r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnk 318 (360)
T KOG0145|consen 239 RFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNK 318 (360)
T ss_pred hhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCccc
Confidence 000000 0 0011234578999999999999999999999999999999999999999
Q ss_pred ccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 027706 125 HRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 162 (220)
Q Consensus 125 ~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~ 162 (220)
+|||+||.+.+-++|..|+..++ .+.++.|.|.+...+
T Consensus 319 CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 319 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999997655 899999999997654
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=9.8e-21 Score=158.91 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=121.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhh-----------h-hcccCCCC---
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT-----------R-YAALGAPT--- 65 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~-----------r-~~~~~~~~--- 65 (220)
||+.+.++.+ |||||.|.+..+|.+||+.+|+..+.+|+|.|.||..+..-.... + ......+.
T Consensus 149 IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~ 227 (678)
T KOG0127|consen 149 IPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDG 227 (678)
T ss_pred cccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccc
Confidence 6777776655 999999999999999999999999999999999986544322210 0 00000000
Q ss_pred --------------CC--C--------------------C---CCCCCC--C-----CCCCCCCCCEEEEcCCCCCCCHH
Q 027706 66 --------------LY--D--------------------H---PGSFYG--R-----GESSQRIGKKIFVGRLPQEATAE 99 (220)
Q Consensus 66 --------------~~--~--------------------~---~~~~~~--~-----~~~~~~~~~~l~v~nlp~~~~~~ 99 (220)
.. + . ++.... . -........+|||+|||++++++
T Consensus 228 ~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEE 307 (678)
T KOG0127|consen 228 KDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEE 307 (678)
T ss_pred cccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHH
Confidence 00 0 0 000000 0 01122334899999999999999
Q ss_pred HHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--------CccCCeEEEEEeccCCCC
Q 027706 100 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--------HEICGQQVAIDSATPLDD 164 (220)
Q Consensus 100 ~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--------~~i~g~~i~v~~a~~~~~ 164 (220)
+|.++|++||.|..+.|+.++.|+.++|.|||.|.+..+|.+||+.- -.|.|+.|.|..|.++.+
T Consensus 308 el~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 308 ELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 99999999999999999999999999999999999999999999743 157899999999987654
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.2e-20 Score=151.63 Aligned_cols=142 Identities=16% Similarity=0.322 Sum_probs=116.3
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch-hhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY-ISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
--|+.|+++||||||+|+-+|.|+-|++.||+..+.+|.|+|+.-..-.+ ........ +.
T Consensus 146 SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vq-------------------ee 206 (544)
T KOG0124|consen 146 SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQ-------------------EE 206 (544)
T ss_pred ccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHH-------------------HH
Confidence 45899999999999999999999999999999999999998863211100 00000000 01
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
...-++|||..+.++++|+||+.+|+.||+|..|.+.+++.++.++||+|++|.+..+...|+..++ .+.|..|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 2345799999999999999999999999999999999999999999999999999999999987555 88999999988
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
+...
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 7543
No 21
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=3.3e-20 Score=150.47 Aligned_cols=145 Identities=32% Similarity=0.531 Sum_probs=117.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
+.+|+.|+++|||+||+|++.+...++|. ...+.+.++.|.+..+.+ |... ... ..
T Consensus 38 vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~--------r~~~--------~~~-------~~ 93 (311)
T KOG4205|consen 38 VMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVS--------REDQ--------TKV-------GR 93 (311)
T ss_pred EeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceeccC--------cccc--------ccc-------cc
Confidence 46899999999999999999999999993 333457777775432211 1100 000 01
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a 159 (220)
.....+|||++||..++++++++.|.+||.|..+.++.|..+.+++||+||.|.+++++.+++. ..|+|+++.+.|..|
T Consensus 94 ~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 94 HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRA 173 (311)
T ss_pred ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeec
Confidence 2256799999999999999999999999999999999999999999999999999999999975 678999999999999
Q ss_pred cCCCCCCCCC
Q 027706 160 TPLDDAGPSQ 169 (220)
Q Consensus 160 ~~~~~~~~~~ 169 (220)
.|++...+..
T Consensus 174 ~pk~~~~~~~ 183 (311)
T KOG4205|consen 174 IPKEVMQSTK 183 (311)
T ss_pred cchhhccccc
Confidence 9998876653
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.82 E-value=5e-20 Score=161.91 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=113.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||.++|||||+|.+.++|++||+.|++..+.++.|.|.++............... .+.....+..........
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 405 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGM-APVTLLAKALSQSILQIG 405 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccc-cccccccccchhhhcccc
Confidence 4688999999999999999999999999999999999999998877543222111110000 000000000000000112
Q ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHHHhccCcEEEEEeecCC---CCCCccceEEEEECCHHHHHHHHhcCC
Q 027706 81 QRIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDP---KRTGHRGFGFVTFAEEVVADRVSRRSH 147 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~----------~~~~l~~~F~~~G~i~~~~i~~d~---~tg~~~g~afV~f~~~~~a~~al~~~~ 147 (220)
..++.+|+|.||.... ..++|+++|++||.|..|.|+++. .++...|++||+|.+.++|++||..++
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 3456889999996421 235789999999999999998752 345568999999999999999998776
Q ss_pred --ccCCeEEEEEeccC
Q 027706 148 --EICGQQVAIDSATP 161 (220)
Q Consensus 148 --~i~g~~i~v~~a~~ 161 (220)
.|.|+.|.|.|...
T Consensus 486 Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 486 GRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCEECCeEEEEEEeCH
Confidence 89999999998753
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.81 E-value=2e-19 Score=156.77 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=106.0
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCC---CCCCCCCC-----CCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH---PGSFYGRG-----ESSQ 81 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~~~~-----~~~~ 81 (220)
.+|||||+|.+.++|++||..|++..+.++.|.|.++.....................+. +....... ....
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 479999999999999999999999999999999987754322111000000000000000 00000000 0012
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCc--EEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeE----
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ---- 153 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~--i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~---- 153 (220)
.++.+|||+|||+++++++|+++|+.||. |..|++.... ++ .+++|||+|.+.++|..||..++ .|.++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~ 469 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAP 469 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCcc
Confidence 46789999999999999999999999998 8888876543 23 57899999999999999997655 788774
Q ss_pred --EEEEeccCC
Q 027706 154 --VAIDSATPL 162 (220)
Q Consensus 154 --i~v~~a~~~ 162 (220)
|+|.+++++
T Consensus 470 ~~lkv~fs~~~ 480 (481)
T TIGR01649 470 YHLKVSFSTSR 480 (481)
T ss_pred ceEEEEeccCC
Confidence 899998764
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.80 E-value=6.6e-20 Score=154.21 Aligned_cols=150 Identities=25% Similarity=0.379 Sum_probs=120.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
||.|+.+++|+|.|||+|.+.+.+..|| .|.|+.+.+.+|.|+........ .... .+... ....
T Consensus 211 iI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr-----~a~~-s~a~~---------~k~~ 274 (549)
T KOG0147|consen 211 IIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNR-----AANA-SPALQ---------GKGF 274 (549)
T ss_pred eeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHH-----HHhc-ccccc---------cccc
Confidence 6889999999999999999999999999 89999999999987644221111 1110 00000 0002
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
..+...|||+||.+++++++|+.+|++||.|..|.++.|.+||.++||+||+|.+.++|.+|+.+++ +|.|+.|+|..
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 3344559999999999999999999999999999999999999999999999999999999987666 89999999998
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
...+....
T Consensus 355 v~~r~~~~ 362 (549)
T KOG0147|consen 355 VTERVDTK 362 (549)
T ss_pred eeeecccc
Confidence 77654443
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=8.9e-19 Score=146.59 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=108.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|.||. | |.|||||.|.++++|++||++|+...+.+++|++-|+
T Consensus 30 vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s---------------------------------- 72 (369)
T KOG0123|consen 30 VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS---------------------------------- 72 (369)
T ss_pred EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh----------------------------------
Confidence 35788 7 9999999999999999999999999999999975332
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
......|||.||++.++..+|.++|+.||+|.+|++..+.. | ++|| ||+|++++.|.+|+..++ .+.++.|.|..
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 11112299999999999999999999999999999999854 5 9999 999999999999998655 78899999999
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
..++.++.
T Consensus 150 ~~~~~er~ 157 (369)
T KOG0123|consen 150 FERKEERE 157 (369)
T ss_pred ccchhhhc
Confidence 88776654
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.78 E-value=1.4e-18 Score=151.56 Aligned_cols=132 Identities=13% Similarity=0.125 Sum_probs=100.7
Q ss_pred cccEEEEEecCHHHHHhhCCCC--CCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 027706 10 HRGIGFITFASAVVVDRATPKE--DDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKI 87 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~--~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (220)
+||||||+|.+.++|++||..+ ++..+.+++|.|+|+..+..... .. .. ..........+|
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~----~~------~~-------~~~~~~~~~~~v 99 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRD----GN------SD-------FDSAGPNKVLRV 99 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccC----CC------Cc-------ccCCCCCceEEE
Confidence 6799999999999999999764 56779999999988754321100 00 00 000012234579
Q ss_pred EEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC--eEEEEEeccCC
Q 027706 88 FVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAIDSATPL 162 (220)
Q Consensus 88 ~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~i~v~~a~~~ 162 (220)
||.||++++++++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.++ .|.+ ..|+|.|+++.
T Consensus 100 ~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 100 IVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 9999999999999999999999999999987642 4689999999999999997655 7754 58999998764
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=1.8e-19 Score=155.48 Aligned_cols=135 Identities=26% Similarity=0.413 Sum_probs=111.2
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIF 88 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (220)
.|.|||||+|.++++|+.|+..|++..+.++.|.+.++..++.... +...+......+|+
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~--------------------gK~~~~kk~~tKIl 617 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTV--------------------GKKKSKKKKGTKIL 617 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccc--------------------ccccccccccceee
Confidence 4779999999999999999999999999999998776641111110 00011234478999
Q ss_pred EcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCC
Q 027706 89 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLD 163 (220)
Q Consensus 89 v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~ 163 (220)
|.|||+.++-.+++++|..||.|.+|+|+.....+.++|||||+|-+..+|.+|+..++ .+.|+.|.++||....
T Consensus 618 VRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 618 VRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999999999999876667789999999999999999987655 7899999999998543
No 28
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=3.6e-18 Score=130.22 Aligned_cols=80 Identities=36% Similarity=0.603 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~a 159 (220)
+..-.+|||++|+|+++.+.|+++|++||+|++..|+.|+.|+++|||+||+|.+.++|.+||++.+ .|+||+..|++|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 4556899999999999999999999999999999999999999999999999999999999999888 899999999987
Q ss_pred c
Q 027706 160 T 160 (220)
Q Consensus 160 ~ 160 (220)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 5
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=4.6e-17 Score=141.40 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=109.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhh-h---------------------
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATR-Y--------------------- 58 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r-~--------------------- 58 (220)
|++|+.||+++|||||+|.+.++|.+||+.|++..+.++.|.|.++........... .
T Consensus 218 ~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (457)
T TIGR01622 218 LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQL 297 (457)
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHH
Confidence 467889999999999999999999999999999999999999998642211100000 0
Q ss_pred -------c---ccCCCCCC-----------------CCC---CCC------CCC---CCCCCCCCCEEEEcCCCCCCC--
Q 027706 59 -------A---ALGAPTLY-----------------DHP---GSF------YGR---GESSQRIGKKIFVGRLPQEAT-- 97 (220)
Q Consensus 59 -------~---~~~~~~~~-----------------~~~---~~~------~~~---~~~~~~~~~~l~v~nlp~~~~-- 97 (220)
. ....+... ..| ... ... .........+|+|.||....+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~ 377 (457)
T TIGR01622 298 MEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEE 377 (457)
T ss_pred HHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccc
Confidence 0 00000000 000 000 000 000225668899999954433
Q ss_pred --------HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 027706 98 --------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 161 (220)
Q Consensus 98 --------~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~ 161 (220)
.+||++.|++||.|..|.|... ...|++||+|.++++|.+|++.++ .+.|+.|.|.+...
T Consensus 378 ~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 378 EPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred cchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 3679999999999999988643 367999999999999999998766 89999999998753
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=9.8e-17 Score=133.57 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|++|+|+.|..|++++|||||+|.++++|++||+.++ .|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999997655 8899999999
Q ss_pred eccCC
Q 027706 158 SATPL 162 (220)
Q Consensus 158 ~a~~~ 162 (220)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 31
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.8e-16 Score=119.73 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|-|.||+.+++|++|+++|.+||.|..|.|.+|++||.++|||||.|.+.++|.+||..++ -++.-.|.|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45577899999999999999999999999999999999999999999999999999999999997555 6677789999
Q ss_pred eccCC
Q 027706 158 SATPL 162 (220)
Q Consensus 158 ~a~~~ 162 (220)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 32
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2e-16 Score=109.78 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 157 (220)
+...+++|||+||++.++|++|.++|+++|.|..|.+-.|+.+..+-|||||+|.+.++|+.||+.. ..+..++|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3456799999999999999999999999999999999999999999999999999999999999844 48899999999
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
|.-
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 865
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=123.23 Aligned_cols=119 Identities=19% Similarity=0.354 Sum_probs=104.0
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEEc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVG 90 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 90 (220)
|.||||..++...|+.||..|++.++.+..|.|.-++. ....+.+|+|+
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks-------------------------------Ksk~stkl~vg 84 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS-------------------------------KSKASTKLHVG 84 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEeccc-------------------------------cCCCccccccC
Confidence 67999999999999999999999999999988643311 13356889999
Q ss_pred CCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCCCCCCC
Q 027706 91 RLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAGPS 168 (220)
Q Consensus 91 nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~~~~~~ 168 (220)
||.+.++..+|+..|++||.|.+|.|++| |+||.|+-.++|..|+..++ ++.|++++|.++.++-...+.
T Consensus 85 Nis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 85 NISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred CCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCCC
Confidence 99999999999999999999999999876 99999999999999997655 999999999999887665553
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=5.1e-15 Score=108.25 Aligned_cols=77 Identities=31% Similarity=0.600 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
..++|||+||+..+++.+|+.+|..||.|..|.|... +.|||||+|++..+|+.|+..|+ .|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999998775 67899999999999999987554 9999999999987
Q ss_pred CCCC
Q 027706 161 PLDD 164 (220)
Q Consensus 161 ~~~~ 164 (220)
-+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5544
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.1e-15 Score=98.20 Aligned_cols=68 Identities=32% Similarity=0.687 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 87 l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
|||+|||+++++++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|++|+..++ .+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 678899999999999999999998555 88888874
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=3.2e-15 Score=110.20 Aligned_cols=76 Identities=22% Similarity=0.484 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~a 159 (220)
..+++|||+|||.++.+.+|+++|.+||.|.+|.|... ...-.||||+|++..+|+.||. +.-.+.|..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999988543 2256799999999999999997 445999999999997
Q ss_pred c
Q 027706 160 T 160 (220)
Q Consensus 160 ~ 160 (220)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 5
No 37
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-15 Score=127.57 Aligned_cols=148 Identities=22% Similarity=0.269 Sum_probs=115.7
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGK 85 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (220)
.+++++||+||.|++.++|..|++.|++....+..+.|..+..+.......+... ......+.......
T Consensus 203 ~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~-----------~~~~~~~~~~~~~~ 271 (369)
T KOG0123|consen 203 SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKF-----------EQEFAKRSVSLQGA 271 (369)
T ss_pred CCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhh-----------Hhhhhhcccccccc
Confidence 4577999999999999999999999999988888887766654322222211100 00000111345668
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCC
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLD 163 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~ 163 (220)
+|||.||+..++.+.|.++|+.+|+|..++|+.+ ..++++||+||.|.+.++|..|+..++ .+.+++|.|.++..+.
T Consensus 272 nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~-~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 272 NLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVD-ENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred ccccccCccccchhHHHHHHhcccceeeEEEEec-cCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 8999999999999999999999999999999998 568899999999999999999987655 8899999999988554
Q ss_pred CC
Q 027706 164 DA 165 (220)
Q Consensus 164 ~~ 165 (220)
.+
T Consensus 351 ~r 352 (369)
T KOG0123|consen 351 DR 352 (369)
T ss_pred cc
Confidence 43
No 38
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=3.1e-15 Score=119.12 Aligned_cols=82 Identities=34% Similarity=0.597 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 79 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
+.....++|+|+|||+...+-||+.+|.+||.|.+|.|+.+ +.| +|||+||+|++.++|++|-.++| .|.||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 45667799999999999999999999999999999999886 333 89999999999999999988777 899999999
Q ss_pred EeccCC
Q 027706 157 DSATPL 162 (220)
Q Consensus 157 ~~a~~~ 162 (220)
..|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999865
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.8e-15 Score=117.44 Aligned_cols=87 Identities=26% Similarity=0.416 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||-.||.+..+.+|.++|-+||.|.+.++..|+.|..+|+|+||.|++..+|..||..++ .|.=++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 4567999999999999999999999999999999999999999999999999999999999998666 78888999999
Q ss_pred ccCCCCCCC
Q 027706 159 ATPLDDAGP 167 (220)
Q Consensus 159 a~~~~~~~~ 167 (220)
.+||+..++
T Consensus 362 KRPkdanRP 370 (371)
T KOG0146|consen 362 KRPKDANRP 370 (371)
T ss_pred cCccccCCC
Confidence 999877643
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-15 Score=115.62 Aligned_cols=84 Identities=32% Similarity=0.532 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||++|..+++|.-|...|-+||.|.+|.++.|.++++++||+||+|+..|+|.+||.+++ +|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4566899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
|+|..-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998643
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.60 E-value=1.8e-14 Score=108.08 Aligned_cols=82 Identities=28% Similarity=0.487 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.......|-|.||.+.++.++|+.+|++||.|-+|.|++|+.|..++|||||.|.+..+|+.|+..+. .|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 45667889999999999999999999999999999999999999999999999999999999998655 8999999999
Q ss_pred eccC
Q 027706 158 SATP 161 (220)
Q Consensus 158 ~a~~ 161 (220)
+|.-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8864
No 42
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=114.45 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEeccCC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 162 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a~~~ 162 (220)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.|.. ++|||||+|.+.++|+.||+ ++..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998854 57899999999999999985 455999999999998643
No 43
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.6e-14 Score=127.00 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+.+++++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|..|+..++ .|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3456899999999999999999999999999999999999999999999999999999999997554 89999999986
Q ss_pred cc
Q 027706 159 AT 160 (220)
Q Consensus 159 a~ 160 (220)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 54
No 44
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=2.3e-14 Score=92.37 Aligned_cols=68 Identities=38% Similarity=0.660 Sum_probs=60.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 87 l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
|||+|||+++++++|.++|+.+|.|..+.+..++. +..+++|||+|.+.++|..|+...+ .+.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 8899999999999999999997444 88888874
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.9e-13 Score=107.71 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~ 158 (220)
..+-+||||+-|+++++|..|+..|+.||.|+.|.|+.|+.||+++|||||+|++..+..+|.++ +..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46779999999999999999999999999999999999999999999999999999999999873 4499999999998
Q ss_pred ccCCC
Q 027706 159 ATPLD 163 (220)
Q Consensus 159 a~~~~ 163 (220)
..-+.
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 76443
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.55 E-value=3.4e-14 Score=118.73 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI 83 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (220)
.+.+|+..|=|||+|.++|++++||+ ++-..+..|-|.|-.+...+......+. .......
T Consensus 42 ~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~~~------------------g~~s~~~ 102 (510)
T KOG4211|consen 42 PRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMRPG------------------GPNSSAN 102 (510)
T ss_pred eccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCccccccccCC------------------CCCCCCC
Confidence 35689999999999999999999993 4444467777766443222221111100 0002245
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEE-EEeecCCCCCCccceEEEEECCHHHHHHHHhcC-CccCCeEEEEEecc
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSAT 160 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~-~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~-~~i~g~~i~v~~a~ 160 (220)
...|-+++||+.++++||.+||+..-.+.. |.++.++ .+++.|-|||+|++.+.|++||... ..|..+.|.|-.+.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 678999999999999999999999876655 5566664 5779999999999999999999754 47888888887664
No 47
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=9.1e-16 Score=112.75 Aligned_cols=78 Identities=26% Similarity=0.503 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
.+.-|||+|||+++||.||..+|++||+|.+|.+++|+.||+++||||+.|++..+..-|+.+++ .|.|+.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45789999999999999999999999999999999999999999999999999998888888777 8899999999764
No 48
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=7.9e-14 Score=97.84 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.......|||.++..+++|++|.+.|..||+|+.|.+-.|+.||-.+|||+|+|++.+.|.+|+..++ +|.+..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998666 8999999999
Q ss_pred eccCCCC
Q 027706 158 SATPLDD 164 (220)
Q Consensus 158 ~a~~~~~ 164 (220)
|+..+.+
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9976543
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.7e-14 Score=108.31 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~ 161 (220)
...+||+.|..+++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..++ -|.+|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5689999999999999999999999999999999999999999999999999999999998665 88899999999987
Q ss_pred CCCC
Q 027706 162 LDDA 165 (220)
Q Consensus 162 ~~~~ 165 (220)
|...
T Consensus 142 Kp~e 145 (321)
T KOG0148|consen 142 KPSE 145 (321)
T ss_pred Cccc
Confidence 7643
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.9e-14 Score=115.53 Aligned_cols=86 Identities=24% Similarity=0.450 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC---ccC--CeEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EIC--GQQV 154 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~---~i~--g~~i 154 (220)
.+....+|||+-||..++|+||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..+| .|. ..+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 44567899999999999999999999999999999999999999999999999999999999987666 454 4689
Q ss_pred EEEeccCCCCC
Q 027706 155 AIDSATPLDDA 165 (220)
Q Consensus 155 ~v~~a~~~~~~ 165 (220)
.|++|....++
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99999866555
No 51
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=9.9e-14 Score=116.10 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCH--HHHHHHHhcCC--ccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE--VVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~--~~a~~al~~~~--~i~g~~i~ 155 (220)
......+||||||++.+++++|+.+|+.||.|..|.|+ ++|| ||||||+|.+. .++.+||..++ ++.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 34556899999999999999999999999999999999 4577 89999999987 67888987655 89999999
Q ss_pred EEeccC
Q 027706 156 IDSATP 161 (220)
Q Consensus 156 v~~a~~ 161 (220)
|..|+|
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999985
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=105.81 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a~ 160 (220)
...+|||+||++.+|+++|+++|+.||.|.+|.|++|.. .++||||+|.+.++|+.||+ ++..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 358999999999999999999999999999999999843 56799999999999999985 6779999999998764
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.48 E-value=5.2e-13 Score=101.78 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=108.2
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhh------ccc--------CCCC-CCCC
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY------AAL--------GAPT-LYDH 69 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~------~~~--------~~~~-~~~~ 69 (220)
-.|.+.||-|||.|.+.+.|..|+..|++....+++++++||..+..+-...+- ... ..+. ....
T Consensus 46 ~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~ 125 (221)
T KOG4206|consen 46 FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGH 125 (221)
T ss_pred cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCccccccc
Confidence 358899999999999999999999999999999999999999877665443210 000 0000 0000
Q ss_pred CCC--CCCC----CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHH
Q 027706 70 PGS--FYGR----GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 143 (220)
Q Consensus 70 ~~~--~~~~----~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al 143 (220)
+.. .... ......+...||+.|||.+++.+.|..+|.+|....+++++.. ..+.|||+|.+...|..|.
T Consensus 126 ~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~ 200 (221)
T KOG4206|consen 126 FYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQ 200 (221)
T ss_pred ccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHh
Confidence 000 0000 0223567789999999999999999999999999999988765 4579999999987777776
Q ss_pred hcCC--cc-CCeEEEEEecc
Q 027706 144 RRSH--EI-CGQQVAIDSAT 160 (220)
Q Consensus 144 ~~~~--~i-~g~~i~v~~a~ 160 (220)
..+. .| ....+.|.++.
T Consensus 201 ~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 201 QALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhhccceeccCceEEecccC
Confidence 5333 33 26677776653
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=1.2e-13 Score=101.75 Aligned_cols=81 Identities=25% Similarity=0.511 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 157 (220)
......+|||+||+..++++.|.++|-+.|+|.++.|++|+.+..++|||||+|.++|+|+-|++ ++-.+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999986 4448899999999
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 987
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=8.4e-13 Score=88.55 Aligned_cols=81 Identities=17% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
..+...-|||.|||+.+|.+++.++|.+||.|..|+|-..++ .+|-|||.|++..+|.+|+..+. .++++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 345678899999999999999999999999999999976554 67999999999999999998665 8899999999
Q ss_pred eccCCC
Q 027706 158 SATPLD 163 (220)
Q Consensus 158 ~a~~~~ 163 (220)
+-++.+
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877643
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=7.1e-13 Score=84.74 Aligned_cols=70 Identities=37% Similarity=0.720 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
+|||+|||..+++++|+++|..||.|..+.+..+. +.++++|||+|.+.++|+.|+..++ .+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 6788999999999999999997544 7888888763
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-12 Score=108.78 Aligned_cols=83 Identities=28% Similarity=0.426 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEecc
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSAT 160 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~a~ 160 (220)
....+|||.|||.+++.++|+++|..||.|+...|....-.++..+||||+|.+.++++.||+... .|.+++|.|+..+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 344569999999999999999999999999998777643234444899999999999999997544 8999999999877
Q ss_pred CCCC
Q 027706 161 PLDD 164 (220)
Q Consensus 161 ~~~~ 164 (220)
+...
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6443
No 58
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=3.8e-13 Score=114.03 Aligned_cols=83 Identities=30% Similarity=0.542 Sum_probs=77.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~ 162 (220)
..|||+|+|+++++++|.++|+..|.|.+++++.|++||+.+||+|++|.+.++|+.|+.+++ ++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999999999999999999999999998777 999999999999766
Q ss_pred CCCCC
Q 027706 163 DDAGP 167 (220)
Q Consensus 163 ~~~~~ 167 (220)
..+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 55433
No 59
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=9.5e-13 Score=83.84 Aligned_cols=69 Identities=35% Similarity=0.640 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 89 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 89 v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..++ .+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788999999999999999999997655 7788888763
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=104.92 Aligned_cols=78 Identities=35% Similarity=0.656 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~ 161 (220)
..+|||+|||+.+++++|.++|..||.|..+.+..|+.++.++|||||+|.+.++|..|+..++ .+.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999899999999999999999999998655 89999999999654
No 61
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.5e-12 Score=107.79 Aligned_cols=78 Identities=27% Similarity=0.554 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc-CCeEEEEEe
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-CGQQVAIDS 158 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i-~g~~i~v~~ 158 (220)
...+.|||+.||.++.|++|..+|++.|+|.+++|+.|+.+|.+||||||+|.+.++|+.|++.+| +| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567999999999999999999999999999999999999999999999999999999999998655 44 588777664
Q ss_pred c
Q 027706 159 A 159 (220)
Q Consensus 159 a 159 (220)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 62
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=7.5e-12 Score=80.36 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=64.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+..+ .++++|||+|.+.++|..|+..++ .+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 678999999999999999998655 57899988864
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.35 E-value=2.2e-12 Score=109.34 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=100.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhh----hhhc---ccCC----------
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA----TRYA---ALGA---------- 63 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~----~r~~---~~~~---------- 63 (220)
+++|..||+++||+||+|.+.++|.+|++.||+..+.|+.|.|.........+.. .... ..+.
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql 389 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQL 389 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHH
Confidence 5788899999999999999999999999999998899999987533211111100 0000 0000
Q ss_pred ------CCCCCCC--------------------CCCCCCCCCC-------CCCCCEEEEcCC--CCCCC--------HHH
Q 027706 64 ------PTLYDHP--------------------GSFYGRGESS-------QRIGKKIFVGRL--PQEAT--------AED 100 (220)
Q Consensus 64 ------~~~~~~~--------------------~~~~~~~~~~-------~~~~~~l~v~nl--p~~~~--------~~~ 100 (220)
......+ .........+ ..++.++.+.|+ |.+.| .+|
T Consensus 390 ~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~ed 469 (549)
T KOG0147|consen 390 MAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIRED 469 (549)
T ss_pred HHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHH
Confidence 0000000 0000000001 145566667776 22222 256
Q ss_pred HHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 101 LRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 101 l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
+.+.+.++|.|..|.+... +-|+.||.|.+.++|..|+..+| .+.|+.|.+.+-
T Consensus 470 V~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 470 VIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 7778899999988877543 44899999999999999999888 789999998875
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.34 E-value=1.5e-11 Score=101.73 Aligned_cols=77 Identities=17% Similarity=0.351 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHh-ccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
..+.+||.|||+++.|.+|+++|. +.|+|+.|.++.| ++|+++|||.|+|+++|.+++|++.++ ++.|++|+|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999995 7899999999999 679999999999999999999998665 899999999865
Q ss_pred c
Q 027706 160 T 160 (220)
Q Consensus 160 ~ 160 (220)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 4
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=2e-12 Score=101.80 Aligned_cols=70 Identities=30% Similarity=0.704 Sum_probs=66.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~ 162 (220)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ |+||..++...|+.||.++| +|+|..|.|+.+++|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999876 99999999999999999988 999999999999877
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.30 E-value=2.9e-12 Score=104.34 Aligned_cols=84 Identities=42% Similarity=0.666 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEeccC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 161 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a~~ 161 (220)
..++|||++|+|+++++.|++.|.+||+|.+|.+++|+.+++++||+||+|++.+....+|. ..|.|.|+.|.+..|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999988888886 56799999999999998
Q ss_pred CCCCC
Q 027706 162 LDDAG 166 (220)
Q Consensus 162 ~~~~~ 166 (220)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 87543
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=4.2e-12 Score=102.85 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+.+.+++.|+.|+..|.+||.|++|.+..|+.|+++||||||+|+-.|.|.-|++.++ .+.|+.|+|..
T Consensus 110 LaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 110 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3456899999999999999999999999999999999999999999999999999999999998666 88999999985
Q ss_pred c
Q 027706 159 A 159 (220)
Q Consensus 159 a 159 (220)
-
T Consensus 190 P 190 (544)
T KOG0124|consen 190 P 190 (544)
T ss_pred C
Confidence 3
No 68
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=3.6e-11 Score=77.43 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=51.4
Q ss_pred HHHHHHHHh----ccCcEEEEE-eecCCCC--CCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 98 AEDLRRYFS----RFGRILDVY-VPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 98 ~~~l~~~F~----~~G~i~~~~-i~~d~~t--g~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
+++|+++|+ .||.|.+|. |+.++.+ +.++||+||+|.+.++|.+|+..++ .+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 8899999999999999999998665 889999876
No 69
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=7.1e-11 Score=72.54 Aligned_cols=54 Identities=30% Similarity=0.540 Sum_probs=47.0
Q ss_pred HHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 101 LRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 101 l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|+..++ .+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997753 5799999999999999998555 899999999986
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.2e-11 Score=98.30 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
..+.+.|||--|.+-++.++|+-+|+.||.|..|.|++|..||.+..||||+|++.+++++|.-++. -|..++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 5567899999999999999999999999999999999999999999999999999999999975443 78999999999
Q ss_pred ccC
Q 027706 159 ATP 161 (220)
Q Consensus 159 a~~ 161 (220)
+++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 864
No 71
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.1e-09 Score=81.30 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=92.7
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIF 88 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (220)
..-.||||+|+++.+|+.||..-++..+.+..|.|.+...-.. ...+-...+.-... .-........++.....+|.
T Consensus 43 g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~--s~~~~G~y~gggrg-Ggg~gg~rgppsrrSe~RVv 119 (241)
T KOG0105|consen 43 GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRS--SSDRRGSYSGGGRG-GGGGGGRRGPPSRRSEYRVV 119 (241)
T ss_pred CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCc--ccccccccCCCCCC-CCCCCcccCCcccccceeEE
Confidence 3457999999999999999999999999999998876532210 00000000000000 00011112234566778999
Q ss_pred EcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC
Q 027706 89 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 147 (220)
Q Consensus 89 v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~ 147 (220)
|.+||++.+|.||+++..+-|.|+...+.+| |.+.|+|...|+.+-||.++.
T Consensus 120 VsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 120 VSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred EecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 9999999999999999999999999988877 489999999999999987554
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.6e-10 Score=100.79 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=100.5
Q ss_pred EEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhh--------hhhcccCCCCCC-----------CCCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA--------TRYAALGAPTLY-----------DHPGSFY 74 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~--------~r~~~~~~~~~~-----------~~~~~~~ 74 (220)
|.|+|.++.+|.+|...|....+...++...++......... .+......+... ..|....
T Consensus 424 aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~s 503 (725)
T KOG0110|consen 424 AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEES 503 (725)
T ss_pred eeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccc
Confidence 899999999999999999988887777776665333222110 000000000000 0000000
Q ss_pred --CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCC---CCccceEEEEECCHHHHHHHHhc--CC
Q 027706 75 --GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSRR--SH 147 (220)
Q Consensus 75 --~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~t---g~~~g~afV~f~~~~~a~~al~~--~~ 147 (220)
..........++|||.||++.++.++|..+|...|.|..+.|...+.. -.+.||+||+|.+.++|..|++. ++
T Consensus 504 s~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 504 SLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred cchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 001111222334999999999999999999999999999988765432 12459999999999999999986 45
Q ss_pred ccCCeEEEEEecc
Q 027706 148 EICGQQVAIDSAT 160 (220)
Q Consensus 148 ~i~g~~i~v~~a~ 160 (220)
.|.|+.|.|+++.
T Consensus 584 vldGH~l~lk~S~ 596 (725)
T KOG0110|consen 584 VLDGHKLELKISE 596 (725)
T ss_pred eecCceEEEEecc
Confidence 9999999999987
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.5e-11 Score=92.76 Aligned_cols=83 Identities=27% Similarity=0.479 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC---ccCC--eEEEEE
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICG--QQVAID 157 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~---~i~g--~~i~v~ 157 (220)
.+++|||+.|...-.|+|++.+|..||.|.+|.+.+.. .|.+||||||.|.++.+|..||..+| .+.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999985 58899999999999999999998777 4544 578999
Q ss_pred eccCCCCCC
Q 027706 158 SATPLDDAG 166 (220)
Q Consensus 158 ~a~~~~~~~ 166 (220)
++...+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 998766654
No 74
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=7.6e-11 Score=100.87 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=104.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
+++|..||.|+||||.+|.+....+.|+..++++.+.++.+.|+.+.............. ....+.-.....+..
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~-----~~~~~~i~~~~~q~~ 395 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNIS-----QSQVPGIPLLMTQMA 395 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcc-----ccccccchhhhcccC
Confidence 478999999999999999999999999999999999999988876643333222211100 001111111101112
Q ss_pred CCCCCEEEEcCCC--CCC-CH-------HHHHHHHhccCcEEEEEeecCCCC---CCccceEEEEECCHHHHHHHHhcCC
Q 027706 81 QRIGKKIFVGRLP--QEA-TA-------EDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSRRSH 147 (220)
Q Consensus 81 ~~~~~~l~v~nlp--~~~-~~-------~~l~~~F~~~G~i~~~~i~~d~~t---g~~~g~afV~f~~~~~a~~al~~~~ 147 (220)
..+...|.+.|+= .+. .+ ++++..+++||.|..|.|+++... .-..|..||+|.+.++++.|...++
T Consensus 396 g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~ 475 (500)
T KOG0120|consen 396 GIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELT 475 (500)
T ss_pred CCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHcc
Confidence 3344444444431 111 11 345666789999999999887322 2245889999999999999998777
Q ss_pred --ccCCeEEEEEecc
Q 027706 148 --EICGQQVAIDSAT 160 (220)
Q Consensus 148 --~i~g~~i~v~~a~ 160 (220)
.+.++.|.+.+-.
T Consensus 476 GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 476 GRKFANRTVVASYYD 490 (500)
T ss_pred CceeCCcEEEEEecC
Confidence 9999999988764
No 75
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=93.06 Aligned_cols=77 Identities=26% Similarity=0.487 Sum_probs=68.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC-C--ccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-H--EICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~-~--~i~g~~i~v 156 (220)
......+|||++|...++|.+|+++|-+||+|.+|.+... +++|||+|.+.++|+.|...+ + .|+|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 4667789999999999999999999999999999998764 459999999999999997643 2 789999999
Q ss_pred EeccCC
Q 027706 157 DSATPL 162 (220)
Q Consensus 157 ~~a~~~ 162 (220)
.|..++
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999983
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=5e-11 Score=91.71 Aligned_cols=132 Identities=22% Similarity=0.282 Sum_probs=94.6
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEEc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVG 90 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 90 (220)
.||+||+|.+..+|+.||..+++..+.+..+.+.++..+.... +.+.....+. ....-.......+.|+|.
T Consensus 35 ~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~--------g~~~~g~r~~-~~~~~~~p~~s~~r~~~~ 105 (216)
T KOG0106|consen 35 NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR--------GRPRGGDRRS-DSRRYRPPSRTHFRLIVR 105 (216)
T ss_pred cccceeccCchhhhhcccchhcCceecceeeeeeccccccccc--------CCCCCCCccc-hhhccCCcccccceeeec
Confidence 5899999999999999999999888777666655543211111 1111100000 011111235667899999
Q ss_pred CCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 91 RLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 91 nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
+++..+.+.+|.++|.++|.+....+ ..+++||+|+..++|..|+..++ ++.++.|.+...
T Consensus 106 ~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 106 NLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999855544 34599999999999999998666 889999998443
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.12 E-value=1.6e-10 Score=88.06 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=86.5
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCC---cccccCCCCCCCccchhhhhhhhcccCC-----------------------
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFR---PVGRMSHGGYGAYNAYISAATRYAALGA----------------------- 63 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~---~~~r~i~v~~~~~~~~~~~~~r~~~~~~----------------------- 63 (220)
.+=+|||+|.+..+|.+|+..||+.+ ..+..|++.+++.+...+..+-....+.
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~ 155 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDE 155 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccc
Confidence 45799999999999999999999988 6677788887765554332211110000
Q ss_pred ----CCCCCCCCCC--------C------------C----------CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccC
Q 027706 64 ----PTLYDHPGSF--------Y------------G----------RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG 109 (220)
Q Consensus 64 ----~~~~~~~~~~--------~------------~----------~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G 109 (220)
+-....+... . . ..........+|||.||..+++|++|+.+|+.|-
T Consensus 156 ~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~ 235 (284)
T KOG1457|consen 156 GLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYP 235 (284)
T ss_pred cccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCC
Confidence 0000000000 0 0 0001133457899999999999999999999997
Q ss_pred cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc
Q 027706 110 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 110 ~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~ 145 (220)
....++|-.. . ....|||+|++.+.|..|+..
T Consensus 236 gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 236 GFHILKIRAR--G--GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CceEEEEecC--C--CcceEeecHHHHHHHHHHHHH
Confidence 6665555321 2 345899999999999998753
No 78
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.10 E-value=1.5e-10 Score=89.72 Aligned_cols=137 Identities=19% Similarity=0.277 Sum_probs=104.3
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 82 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (220)
+|+. +.-++++|+.|.....-.++-..-++.++..+.|+.. .......|.-. ....
T Consensus 133 ~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a------------------~gtswedPsl~-----ew~~ 188 (290)
T KOG0226|consen 133 RDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA------------------AGTSWEDPSLA-----EWDE 188 (290)
T ss_pred hcCC-CccCcccccCcchhhhhhhhccccccccccCcceeec------------------cccccCCcccc-----cCcc
Confidence 4443 6678899999998888887776666666665554321 11111112111 1355
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
.+.+||++.|.-+++.+.|-..|.+|-.....++++|+.|++++||+||.|.+..++..|+..++ .++.++|++....
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 67899999999999999999999999888889999999999999999999999999999997544 8888998887766
Q ss_pred CCC
Q 027706 161 PLD 163 (220)
Q Consensus 161 ~~~ 163 (220)
.++
T Consensus 269 wke 271 (290)
T KOG0226|consen 269 WKE 271 (290)
T ss_pred HHh
Confidence 554
No 79
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.09 E-value=2.5e-10 Score=92.63 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=104.9
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 82 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (220)
+...+..++|++.|.|+..+.+..||.......+..+.+............. .+. ......
T Consensus 122 ~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~--------------n~~-----~~~~~~ 182 (285)
T KOG4210|consen 122 SLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPK--------------NKL-----SRLSSG 182 (285)
T ss_pred hhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccccccccc--------------chh-----cccccC
Confidence 3456678999999999999999999954443344444433211111100000 000 000233
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEecc
Q 027706 83 IGKKIF-VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~-v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~a~ 160 (220)
...++| |++|++.+++++|+.+|..+|.|..++++.++.++.++||++|+|.+...+..++.. .+.+.++++.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 445566 999999999999999999999999999999999999999999999999999999874 448889999998887
Q ss_pred CCCCC
Q 027706 161 PLDDA 165 (220)
Q Consensus 161 ~~~~~ 165 (220)
+....
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 66443
No 80
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=4.7e-10 Score=98.72 Aligned_cols=78 Identities=21% Similarity=0.437 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
-++||||+.|+..++|.||..+|+.||.|.+|.++. +++||||.+....+|++||.++. .+.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 468999999999999999999999999999998876 57899999999999999998665 7889999999998
Q ss_pred CCCCCC
Q 027706 161 PLDDAG 166 (220)
Q Consensus 161 ~~~~~~ 166 (220)
.+..+.
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 765544
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=1.5e-09 Score=90.06 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=101.9
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc--cchhhhhhhhccc-----------------------
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY--NAYISAATRYAAL----------------------- 61 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~--~~~~~~~~r~~~~----------------------- 61 (220)
+|++||||.|+|+++|.+++|++.|+.+.+.+|+|.|.-..- ..+.....|....
T Consensus 82 ~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG 161 (608)
T KOG4212|consen 82 SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGG 161 (608)
T ss_pred CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCc
Confidence 599999999999999999999999999999999987642211 0000000000000
Q ss_pred ----CCCCCC-CCCCCCC---------------------------CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccC
Q 027706 62 ----GAPTLY-DHPGSFY---------------------------GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG 109 (220)
Q Consensus 62 ----~~~~~~-~~~~~~~---------------------------~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G 109 (220)
..+..+ +.++... .+. -......++||.||.+.+..+.|++.|.--|
T Consensus 162 ~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG 240 (608)
T KOG4212|consen 162 DRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-FSPPLHNKVFVANLDYKVGNKKLKQVFGMAG 240 (608)
T ss_pred cccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccC-CCCCccceeeeeccccccchHHHHHHhccce
Confidence 000000 0011000 000 1233457899999999999999999999999
Q ss_pred cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 110 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 110 ~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.|+.|.+-.|++ |.++|||.++|...-.|..||..+. -+..++..+..
T Consensus 241 kv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 241 KVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred eeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 999998888866 6899999999999888888876444 44455555555
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.01 E-value=3.2e-10 Score=92.57 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=99.8
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCC--CCCCCCCCCCC
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF--YGRGESSQRIG 84 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 84 (220)
.|+..|=|||.|..+++|+.||. .|...+..|.|.+-.+...+......|..+...-.....|... ...--+.....
T Consensus 202 dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~k 280 (508)
T KOG1365|consen 202 DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSK 280 (508)
T ss_pred CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCC
Confidence 58888999999999999999993 3444466666654434333333344444322111111111111 00111123346
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCc-EEE--EEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-c-cCCeEEEEEec
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGR-ILD--VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-E-ICGQQVAIDSA 159 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~--~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~-i~g~~i~v~~a 159 (220)
.+|-+++||++++.++|.++|..|.. |.. +.++.+ ..|++.|-|||+|.+.++|.+|....| . ...+.|.|--+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 78999999999999999999999874 333 566665 458899999999999999999876544 3 34778887655
Q ss_pred c
Q 027706 160 T 160 (220)
Q Consensus 160 ~ 160 (220)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 83
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=2.2e-09 Score=91.82 Aligned_cols=80 Identities=26% Similarity=0.597 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
....+|||.+|...+...+|+.+|++||.|.-.+|+.+..+.-.++|+||++.+.++|.+||.++| +|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 456899999999999999999999999999999999988787789999999999999999999999 899999999988
Q ss_pred cC
Q 027706 160 TP 161 (220)
Q Consensus 160 ~~ 161 (220)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 74
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=2.7e-09 Score=80.47 Aligned_cols=83 Identities=19% Similarity=0.421 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcc-CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~-G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
......-++|..+|..+.+.+|..+|.+| |.+..+++.+++.||.++|||||+|++.+.|+-|-+.+| -+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556779999999999999999999998 678888888999999999999999999999999987666 567888888
Q ss_pred EeccCC
Q 027706 157 DSATPL 162 (220)
Q Consensus 157 ~~a~~~ 162 (220)
.+-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 876543
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.6e-09 Score=92.92 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=105.2
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCC-CCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCE
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGY-GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKK 86 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (220)
...+.||||+|.+.++|..|+ .+++....++++.+.- ...........-... . ................++
T Consensus 220 n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~---~----~~~~~~~~~t~~~~~~~k 291 (500)
T KOG0120|consen 220 NLEKNFAFIEFRSISEATEAM-ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ---L----GKVGLLPASTDVPDSPNK 291 (500)
T ss_pred cccccceeEEecCCCchhhhh-cccchhhCCCCceecccccccCCccchhhhcc---c----cccCCcccccCcccccch
Confidence 567889999999999999999 5566556666654310 000000000000000 0 000000111113455688
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCC
Q 027706 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLD 163 (220)
Q Consensus 87 l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~ 163 (220)
+||++||..+++.++.+++..||.+....++.|..+|.++||||.+|-+......|+..++ .+.+..|.|..|....
T Consensus 292 i~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 292 IFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 9999999999999999999999999999999999999999999999999999999998666 7888999999887543
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.97 E-value=2.3e-08 Score=84.31 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=56.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEe
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 158 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~ 158 (220)
..+..++||+..++.+|..+|+..-.+ .+.|-.. .+|+..|-|+|+|.++++|..|+.... .+..+-|.+-.
T Consensus 282 ~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 282 HFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFL 354 (510)
T ss_pred ceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhccCCcccCcceeeecc
Confidence 678889999999999999999987655 3444333 468899999999999999999996444 66666665544
No 87
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.93 E-value=2.8e-10 Score=83.58 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=43.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|+++||||||+|++.++|++||+.|++..+.++.|.|.++.
T Consensus 66 i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999987664
No 88
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.93 E-value=4.7e-09 Score=80.32 Aligned_cols=79 Identities=28% Similarity=0.470 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH----HHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRR----YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~----~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
.+..+|||.||+.-+..++|+. +|++||.|.+|.... |.+.+|-|||.|.+.+.|..|+.+++ .+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999988777 999999999987754 57789999999999999999998766 78899999
Q ss_pred EEeccCCC
Q 027706 156 IDSATPLD 163 (220)
Q Consensus 156 v~~a~~~~ 163 (220)
|.+|..+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998654
No 89
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.89 E-value=6.7e-10 Score=83.71 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
||+|+.|+.++|||||.|.+..+|+.||+.|++..+.++.|.|++|.+...
T Consensus 45 IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 45 IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred cccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCCC
Confidence 799999999999999999999999999999999999999999988755433
No 90
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.83 E-value=8.9e-09 Score=82.59 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=85.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc--cchhhhhhhhcccCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY--NAYISAATRYAALGAPTLYDHPGSFYGRGE 78 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~--~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 78 (220)
|+.|+.|++++|||||+|.++++|..|++.+++..+.++.|.|.++.. ......... ..............
T Consensus 147 ~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 219 (306)
T COG0724 147 LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN-------LDASFAKKLSRGKA 219 (306)
T ss_pred eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc-------cchhhhcccccccc
Confidence 467889999999999999999999999999999999999999887542 100000000 00000000011112
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEE
Q 027706 79 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 132 (220)
Q Consensus 79 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~ 132 (220)
........+++.+++..++..++...|..++.+....+.............++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccc
Confidence 245667889999999999999999999999999777666554333333334433
No 91
>smart00361 RRM_1 RNA recognition motif.
Probab=98.82 E-value=1.4e-09 Score=70.01 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=36.9
Q ss_pred CCCCCC--CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCC
Q 027706 2 PKDQGS--KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSH 42 (220)
Q Consensus 2 ~rD~~t--g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~ 42 (220)
+.|+.| +.++|||||+|.+.++|++||..|++..+.++.|.
T Consensus 26 ~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~ 68 (70)
T smart00361 26 YIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVK 68 (70)
T ss_pred EeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 456666 99999999999999999999999999999988875
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-09 Score=82.78 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=46.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
||.|-+++++||||||+|.-.|+|..||+.|++..+.+|.|+|+++.+.
T Consensus 42 iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 42 IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred cccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 6889999999999999999999999999999999999999999998543
No 93
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=4.3e-08 Score=77.21 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~ 158 (220)
.......+||+|+.+.++.++++.+|+.||.|..+.|+.|+.++.++||+||+|.+.+.++.++. +...|.++.+.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 45677899999999999999999999999999999999999999999999999999999999998 55589999999988
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7644
No 94
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=2.1e-07 Score=73.33 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
....+|+|.|||+.++++||+++|..|+.++.+.+..+ .+|.+.|.|-|.|...++|++|++.++ .++|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34478999999999999999999999999988888888 578999999999999999999998666 788999998887
Q ss_pred cCCCC
Q 027706 160 TPLDD 164 (220)
Q Consensus 160 ~~~~~ 164 (220)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65433
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.76 E-value=4.7e-08 Score=80.67 Aligned_cols=143 Identities=11% Similarity=0.115 Sum_probs=98.4
Q ss_pred EEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccC--------CCCCCCCCCCCCCCCCCCCCCC
Q 027706 13 IGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG--------APTLYDHPGSFYGRGESSQRIG 84 (220)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
-|.|+|.+...|+-|+++|.+.++.++.|+|.+++.........-....+ .-.....|++..... --.++
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n--i~Pps 414 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN--IFPPS 414 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc--cCCch
Confidence 58999999999999999999999999999998876554432221111100 001111122211111 13467
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC-CeEEEEEeccC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDSATP 161 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~-g~~i~v~~a~~ 161 (220)
.+|.+.|+|.+++|++|+.+|..-|-........ ++.+-+|.+.+++.|.|..|+..+| .+. +..++|+++++
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 8999999999999999999999887654432221 2244599999999999999987664 554 45789998764
No 96
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.73 E-value=6.7e-08 Score=78.69 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEE--------EEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 150 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--------~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 150 (220)
.....+|||-+||..+++++|.++|.+++.|. .|.|.+|++|+++||-|.|.|++...|+.|+.... .++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 55668999999999999999999999999875 37889999999999999999999999999987544 899
Q ss_pred CeEEEEEeccCCCC
Q 027706 151 GQQVAIDSATPLDD 164 (220)
Q Consensus 151 g~~i~v~~a~~~~~ 164 (220)
+.+|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999987764
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2e-08 Score=77.52 Aligned_cols=70 Identities=33% Similarity=0.728 Sum_probs=61.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~ 162 (220)
.+|||++||+.+.+.+|+.+|..||.|.++.+. .||+||+|.+..+|..|+..++ +|++..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999998773 3599999999999999997555 888888888888754
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=5.9e-09 Score=77.16 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGG 44 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~ 44 (220)
||||+.||+|+||||+.|++..+..-|++.|++.++.+|+|+|.
T Consensus 67 LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 67 LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 68999999999999999999999999999999999999999985
No 99
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=1.2e-08 Score=77.04 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=43.5
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
-|++.||.|||||||+|++++.|+.|-+.||+..+.++.|.+.+..+.
T Consensus 83 sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 83 SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 478999999999999999999999999999999999999987766544
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.58 E-value=2.9e-07 Score=74.58 Aligned_cols=79 Identities=16% Similarity=0.375 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEE--------EEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 150 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 150 (220)
......|||.|||.++|-+++.++|++||.|.. |+|.++. .|+.+|=|.+.|...++++-|++-+. .+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345567999999999999999999999998763 7888885 49999999999999999999987555 889
Q ss_pred CeEEEEEecc
Q 027706 151 GQQVAIDSAT 160 (220)
Q Consensus 151 g~~i~v~~a~ 160 (220)
|+.|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999886
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=3.9e-08 Score=75.69 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
||.|+.||+|||||||+|.+.|+|.+|++..+ -.|.||...++++.
T Consensus 44 vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 44 VITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred EEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 58899999999999999999999999995543 35888888776653
No 102
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.55 E-value=1.1e-06 Score=67.30 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeec-CCCCCCccceEEEEECCHHHHHHHHhcCC--cc---CCeEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK-DPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQV 154 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~-d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i---~g~~i 154 (220)
....++|||.+||.++..-+|+.+|..|---+.+.|-. ++....++-+|||+|.++.+|.+|+..++ .+ .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34578999999999999999999999987665554432 22223346899999999999999987665 22 47889
Q ss_pred EEEeccCCCCCCC
Q 027706 155 AIDSATPLDDAGP 167 (220)
Q Consensus 155 ~v~~a~~~~~~~~ 167 (220)
+|++|++...+..
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 9999986654433
No 103
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.55 E-value=4.5e-07 Score=73.51 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=99.8
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhh------------hhhhhcccCCCCCCCCCCCCCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS------------AATRYAALGAPTLYDHPGSFYG 75 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~------------~~~r~~~~~~~~~~~~~~~~~~ 75 (220)
|+.||=|.+.|...|+++-||..|++..+.++.|+|..|....... ...+..........-.|..
T Consensus 180 G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~--- 256 (382)
T KOG1548|consen 180 GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR--- 256 (382)
T ss_pred CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc---
Confidence 7889999999999999999999999999999999987663211100 0001000000000001111
Q ss_pred CCCCCCCCCCEEEEcCCC----CCCC-------HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 76 RGESSQRIGKKIFVGRLP----QEAT-------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 76 ~~~~~~~~~~~l~v~nlp----~~~~-------~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
..+......++|.+.||= ...+ +++|.+-.++||.|..|.|.-. .+.|.+-|.|.+.++|..||+
T Consensus 257 ~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq 332 (382)
T KOG1548|consen 257 DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQ 332 (382)
T ss_pred cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHH
Confidence 111234566889999873 2233 3567777899999999977543 378899999999999999998
Q ss_pred cCC--ccCCeEEEEEeccC
Q 027706 145 RSH--EICGQQVAIDSATP 161 (220)
Q Consensus 145 ~~~--~i~g~~i~v~~a~~ 161 (220)
.++ .+.|+.|....-.-
T Consensus 333 ~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 333 TMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HhcCeeecceEEEEEEeCC
Confidence 666 88999998776543
No 104
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.3e-07 Score=81.00 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=62.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
......+|+|-|||..+++++|..+|+.||+|..|+. |-..+|..||+|-|..+|+.|++.++ +|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4677889999999999999999999999999999754 44478899999999999999998766 88888877
No 105
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=5.1e-07 Score=79.34 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCC---CCCccceEEEEECCHHHHHHHHhcCC--ccCCe
Q 027706 78 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ 152 (220)
Q Consensus 78 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~---tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~ 152 (220)
+......++|||+||++.++++.|...|..||+|..++|+..+. ....+-|+||.|-+..+|+.|++.++ .+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 33456778999999999999999999999999999998887542 34456799999999999999998666 77888
Q ss_pred EEEEEecc
Q 027706 153 QVAIDSAT 160 (220)
Q Consensus 153 ~i~v~~a~ 160 (220)
.+++.|++
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99988884
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=1.5e-07 Score=84.04 Aligned_cols=110 Identities=17% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG 84 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
.++++.||+|||+|..++++.+||.. ....+.+ .
T Consensus 703 ~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g---------------------------------------------K 736 (881)
T KOG0128|consen 703 KNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG---------------------------------------------K 736 (881)
T ss_pred hhccccccceeeEeecCCchhhhhhh-hhhhhhh---------------------------------------------h
Confidence 46789999999999999999999943 2221111 3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 161 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~ 161 (220)
..|+|.|+|+..|.+.|+.+++++|.+++++++.. ..|+++|.|||.|.+..++.+++.... .+.-..+.|..+.|
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56899999999999999999999999999987776 468999999999999999998875443 34444555556555
No 107
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=5.7e-08 Score=77.19 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=45.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
||+|+.||+|+|||||+|+++.+...|.+..++.+|.++.|.|.+-....+
T Consensus 133 lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 133 LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTV 183 (335)
T ss_pred EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccccc
Confidence 689999999999999999999999999999999999999998865543333
No 108
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.39 E-value=3e-06 Score=57.51 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=61.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcc--CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-----cc-CCeEEEE
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EI-CGQQVAI 156 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-----~i-~g~~i~v 156 (220)
+||.|.|||...+.++|.+++... |....+.++.|..+.-+.|||||.|.+++.|..-.+..+ .. ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888643 566778899998899999999999999999888765322 22 3566778
Q ss_pred Eecc
Q 027706 157 DSAT 160 (220)
Q Consensus 157 ~~a~ 160 (220)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8775
No 109
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.39 E-value=2.2e-06 Score=69.68 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=62.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccC--cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
......+||+||-|++|++||.+.+...| .+.++++..++.+|.+||||+|...+..+.++.++-+. +|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33456899999999999999999998877 57788899999999999999999998877777765433 677764444
Q ss_pred E
Q 027706 157 D 157 (220)
Q Consensus 157 ~ 157 (220)
.
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 3
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=1.8e-07 Score=71.36 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=63.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~i~v~ 157 (220)
+.....+|||+||...++|+.|.++|-.-|.|..+.|+.++. ++.+ ||||.|.++.+..-|++ ++..+.+..+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 345668999999999999999999999999999999988854 5566 99999999999888864 4446666666665
Q ss_pred e
Q 027706 158 S 158 (220)
Q Consensus 158 ~ 158 (220)
+
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 4
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.33 E-value=6e-05 Score=62.09 Aligned_cols=126 Identities=18% Similarity=0.229 Sum_probs=83.7
Q ss_pred ccEEEEEecCHHHHHhhCCCCCC--CCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q 027706 11 RGIGFITFASAVVVDRATPKEDD--FRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIF 88 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~--~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (220)
+--|.|+|++.+.|++|+.---. ..+.++.-.++|+.. .+.. .|+ +++..+.+.|.
T Consensus 67 ~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts-------q~i~---------R~g------~es~~pN~VLl 124 (494)
T KOG1456|consen 67 KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS-------QCIE---------RPG------DESATPNKVLL 124 (494)
T ss_pred cceeeeeeccccchhhheehhccCcccccCchhhcccchh-------hhhc---------cCC------CCCCCCCeEEE
Confidence 34689999999999999922111 114444444444311 0110 011 11333445555
Q ss_pred Ec--CCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC-C-eEEEEEeccCC
Q 027706 89 VG--RLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-G-QQVAIDSATPL 162 (220)
Q Consensus 89 v~--nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~-g-~~i~v~~a~~~ 162 (220)
+. |--+.+|-+-|..+....|+|..|.|++. ++. -|.|+|++.+.|++|-.+++ .|. | .+|+|++|+|.
T Consensus 125 ~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 125 FTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred EEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 54 44467899999999999999999998875 443 69999999999999987666 553 4 58999999975
Q ss_pred C
Q 027706 163 D 163 (220)
Q Consensus 163 ~ 163 (220)
.
T Consensus 200 r 200 (494)
T KOG1456|consen 200 R 200 (494)
T ss_pred e
Confidence 3
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.30 E-value=7.3e-06 Score=67.32 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=90.1
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCC--------CCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG--------RGESSQR 82 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~--------~~~~~~~ 82 (220)
.|-|.|++-|..+.++|+.+|++..+.+.+|.++.+.+........-.-..+.++-.+-..+... .......
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~ 404 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQP 404 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccC
Confidence 47899999999999999999999999999998877755544333211111111111111111110 0111356
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCc-EEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 147 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~ 147 (220)
+++.|..-|.|..+||+.|.++|..-.. ..+++|...+ +-+ ..-+.++|++.++|..||..++
T Consensus 405 Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-ser-SssGllEfe~~s~Aveal~~~N 468 (494)
T KOG1456|consen 405 PSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SER-SSSGLLEFENKSDAVEALMKLN 468 (494)
T ss_pred CcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccc-cccceeeeehHHHHHHHHHHhc
Confidence 7889999999999999999999976553 3456665443 222 3368899999999999986544
No 113
>smart00360 RRM RNA recognition motif.
Probab=98.25 E-value=5.8e-07 Score=56.57 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=35.5
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHG 43 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v 43 (220)
++++.+++++|||||+|.+.++|.+|++.+++..+.++.|.|
T Consensus 29 ~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 29 VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 455668999999999999999999999999877777776643
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.24 E-value=7.4e-06 Score=67.99 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=63.0
Q ss_pred CCEEEEcCCC-CCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh--cCCccCCeEEEEEecc
Q 027706 84 GKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSAT 160 (220)
Q Consensus 84 ~~~l~v~nlp-~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~i~v~~a~ 160 (220)
...|.|.||. ..+|.+-|-.+|.-||.|..|+|+.++ +--|.|++.+...|.-|+. +++.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5778888886 458999999999999999999999874 2479999999999999986 5569999999999986
Q ss_pred C
Q 027706 161 P 161 (220)
Q Consensus 161 ~ 161 (220)
=
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.20 E-value=9.4e-07 Score=75.48 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=46.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
++-|+.||++|||||++|.+.++|+.|++.|++..+.+|+|+|+|+.....
T Consensus 50 ~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 50 LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred ecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 467999999999999999999999999999999999999999998855444
No 116
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.20 E-value=6.3e-07 Score=69.88 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=43.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+|||+-||+|+||+||.|.+.+++..||.+|++.-+..++|....+..
T Consensus 222 viRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 222 VIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 689999999999999999999999999999999999999987654433
No 117
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.18 E-value=2e-07 Score=59.29 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccC
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMS 41 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i 41 (220)
.++.++|||||+|.+.++|++|++.+++..+.++.|
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 578999999999999999999999999988887765
No 118
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=6.2e-07 Score=63.44 Aligned_cols=44 Identities=9% Similarity=0.131 Sum_probs=41.9
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
-|+.||-.||||.|+|++.++|++||+.+|+..+.+..|.|.||
T Consensus 106 LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 48889999999999999999999999999999999999999877
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.15 E-value=7.7e-06 Score=67.39 Aligned_cols=136 Identities=18% Similarity=0.089 Sum_probs=87.1
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKI 87 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (220)
|+--|.|-|.|.++|.-+-|++ -|.+.+..+.|.|-.+...+..+...- .+.......+...--.|
T Consensus 99 grRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~~iagg-------------~s~e~~~flsk~~qviv 164 (508)
T KOG1365|consen 99 GRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFLKIAGG-------------TSNEAAPFLSKENQVIV 164 (508)
T ss_pred hccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccCchhheEecCC-------------ccccCCCCCCcccceEE
Confidence 5667999999999999999993 344456777776644433222222110 00001111123344567
Q ss_pred EEcCCCCCCCHHHHHHHHhccC----cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEe
Q 027706 88 FVGRLPQEATAEDLRRYFSRFG----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 158 (220)
Q Consensus 88 ~v~nlp~~~~~~~l~~~F~~~G----~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~ 158 (220)
-+++||+++++.++.++|.+-- ....|.++.. -.|+..|-|||.|..+++|..||.+.. .|.-+.|.+-.
T Consensus 165 RmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 165 RMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7789999999999999996321 2334444443 358899999999999999999997544 44444454433
No 120
>PLN03213 repressor of silencing 3; Provisional
Probab=98.12 E-value=7.7e-07 Score=75.43 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=38.4
Q ss_pred CCCCCcccEEEEEecCH--HHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 5 QGSKAHRGIGFITFASA--VVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~--~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
+.|| ||||||+|.+. +++.+||..|++..+.|+.|+|+.|...
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 5678 99999999988 7899999999999999999999988543
No 121
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.12 E-value=3.7e-07 Score=55.77 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=32.8
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
+++|||+|.+.++|++|++.|++..+.++.|.|.|+
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 699999999999999999999999999999887653
No 122
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2e-05 Score=67.28 Aligned_cols=65 Identities=32% Similarity=0.448 Sum_probs=60.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHh-ccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
...+.+|||||+||.-++-++|-.+|+ -||.|.-+-|-.|++-.-++|-+-|+|.+..+-.+||.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 456789999999999999999999998 89999999999998888899999999999999999986
No 123
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.06 E-value=1.2e-06 Score=67.01 Aligned_cols=99 Identities=24% Similarity=0.343 Sum_probs=79.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
||+++. ++.| ||||.|+++-++.-|++.|++.++.++.+.+
T Consensus 41 ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~------------------------------------- 81 (267)
T KOG4454|consen 41 IPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR------------------------------------- 81 (267)
T ss_pred CCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc-------------------------------------
Confidence 344444 6667 9999999999999999999999988888763
Q ss_pred CCCCCEEEEcC----CCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 81 QRIGKKIFVGR----LPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 81 ~~~~~~l~v~n----lp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
+++.|+ |...++++.+...|+.-+.+..+++..+.+ ++++-+.|+++......-.++.
T Consensus 82 -----~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 82 -----TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred -----ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 344444 666789999999999999999999999865 7788899998876655555553
No 124
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.03 E-value=8.2e-07 Score=56.71 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMS 41 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i 41 (220)
+++++ +.++|+|||+|.++++|.+|++.+++..+.++.|
T Consensus 31 ~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 31 IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 45566 8999999999999999999998877677777654
No 125
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=1.5e-06 Score=70.06 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=38.2
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
..-|||||||+|++.+||++|-++||+..+.||+|.|+.+..
T Consensus 132 ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 132 ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 346999999999999999999999999999999999987743
No 126
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.01 E-value=3.2e-05 Score=50.38 Aligned_cols=66 Identities=21% Similarity=0.514 Sum_probs=44.5
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 85 KKIFVGRLPQEATAED----LRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~----l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
..|+|.|||.+.+... |++++..|| .|..| ..+-|+|.|.+.+.|..|.+.+. .+.|..|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999888765 556666776 55544 23579999999999999998655 8899999999
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 127
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.95 E-value=4.7e-06 Score=58.55 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=40.4
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
.|+.|....|||||+|.+.++|+.||.-+++.++..++|.+.+-
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 48889999999999999999999999999999999999987643
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.93 E-value=3e-05 Score=68.45 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=94.5
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhc---------ccCCCCCCCCCCCC
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYA---------ALGAPTLYDHPGSF 73 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~---------~~~~~~~~~~~~~~ 73 (220)
.|+..+--.|-++|+|....++++|++. +......|.+.+.-...........+.. ..+.+.........
T Consensus 344 ~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~ 422 (944)
T KOG4307|consen 344 ENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVR 422 (944)
T ss_pred hhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccC
Confidence 3444444478999999999999999943 4444556666554332111111111100 00111111000001
Q ss_pred CCC-CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEE-EEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCcc
Q 027706 74 YGR-GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEI 149 (220)
Q Consensus 74 ~~~-~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~-~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i 149 (220)
.++ ..........|||..||..+++.++.++|+..-.|++ |.|.+. -+++.++.|||.|...+++..|+.. .+.+
T Consensus 423 ~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~ 501 (944)
T KOG4307|consen 423 PGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYP 501 (944)
T ss_pred CCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-Ccccccchhhheeccccccchhhhccccccc
Confidence 111 1124566789999999999999999999998877776 666554 3577889999999998888887653 3355
Q ss_pred CCeEEEEEe
Q 027706 150 CGQQVAIDS 158 (220)
Q Consensus 150 ~g~~i~v~~ 158 (220)
..+.|.|.-
T Consensus 502 G~r~irv~s 510 (944)
T KOG4307|consen 502 GHRIIRVDS 510 (944)
T ss_pred CceEEEeec
Confidence 666777763
No 129
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=1.7e-05 Score=54.95 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=41.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-------ccCCeEEEEE
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-------EICGQQVAID 157 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-------~i~g~~i~v~ 157 (220)
..|.|.+++..++.++|+++|+.||.|..|.+..... .|+|.|.+.+.|+.|+.... .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688989999999999999999999999998866422 79999999999999875322 4556555554
Q ss_pred e
Q 027706 158 S 158 (220)
Q Consensus 158 ~ 158 (220)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.8e-06 Score=67.91 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=46.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
||||+.||.|.-||||+|.+.+++++|.-+|.+..|..+.|+|.|+...+.
T Consensus 271 VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 271 VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 689999999999999999999999999999999999999999988754433
No 131
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=9.4e-05 Score=44.53 Aligned_cols=52 Identities=25% Similarity=0.530 Sum_probs=41.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHH
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 143 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al 143 (220)
+.|-|.+.+.+..+. +..+|..||+|..+.+.. ..-+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467788888776544 566899999999998862 2348999999999999986
No 132
>smart00362 RRM_2 RNA recognition motif.
Probab=97.78 E-value=1.2e-05 Score=50.65 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSH 42 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~ 42 (220)
+.++|+|||+|.+.++|++|++.+++..+.++.|.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 67899999999999999999998888777777664
No 133
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=9.2e-06 Score=60.10 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=34.2
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
...|||||+|+++.+|+.|+..|++..+.+..|.|.++
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 56799999999999999999999999999988887544
No 134
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.60 E-value=2.9e-05 Score=61.73 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=35.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+. ++|||||+|.++++|+.|| .|++..+.++.|.|..+
T Consensus 36 I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 36 MQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPA 77 (260)
T ss_pred EeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEec
Confidence 456653 5799999999999999999 59999999999987654
No 135
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.55 E-value=3.6e-05 Score=48.58 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCC
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHG 43 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v 43 (220)
+++.+ .++|+|||+|.+.++|..|++.+++..+.++.+.+
T Consensus 33 ~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 33 RDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred eCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33443 67999999999999999999998888777776654
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=0.00017 Score=65.53 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=87.7
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFV 89 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 89 (220)
---||||.|.+...+-.|...+.+..|..-.+.+.+.. ........+|+
T Consensus 412 esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~-------------------------------~kst~ttr~~s 460 (975)
T KOG0112|consen 412 ESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ-------------------------------PKSTPTTRLQS 460 (975)
T ss_pred ccchhhhhhhccccCcccchhhcCCccccCcccccccc-------------------------------cccccceeecc
Confidence 34588999999999888887776665544444332221 12445688999
Q ss_pred cCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC--CeEEEEEeccCCC
Q 027706 90 GRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC--GQQVAIDSATPLD 163 (220)
Q Consensus 90 ~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~--g~~i~v~~a~~~~ 163 (220)
++|+.++....|...|..||.|..|.+-.. .-||+|.|++...|.+|+..+. .|. .+++.|.++.+..
T Consensus 461 gglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 461 GGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred CCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 999999999999999999999999877432 3499999999999999986433 443 4678999887543
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.49 E-value=0.0001 Score=57.87 Aligned_cols=74 Identities=28% Similarity=0.413 Sum_probs=60.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC------ccCCeEEEEEe
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICGQQVAIDS 158 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~------~i~g~~i~v~~ 158 (220)
..|+|.||..-+..+.|.+.|+.||.|....++.| ..+++.+-++|.|...-.|.+|+.... +..++++-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78999999999999999999999999998777776 457888999999999988888875332 55666665554
Q ss_pred c
Q 027706 159 A 159 (220)
Q Consensus 159 a 159 (220)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.49 E-value=0.00039 Score=61.66 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=60.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEE-EEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~-~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
+.|-+.|+|++++-+||.+||..|-.+-. |.+-+ .+.|...|-|.|.|++.++|..|...+. .|..+.|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~-nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR-NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee-cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 37788999999999999999999976543 44444 3679999999999999999999987554 88888887754
No 139
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.39 E-value=0.00013 Score=61.17 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=55.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecC---CCCC--C--------ccceEEEEECCHHHHHHHHhcC
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD---PKRT--G--------HRGFGFVTFAEEVVADRVSRRS 146 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d---~~tg--~--------~~g~afV~f~~~~~a~~al~~~ 146 (220)
...++++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... +.+. . .+-+|+|+|+..+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4568899999999999888999999999999999998775 2221 1 2568999999999999996543
No 140
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=1.3e-05 Score=72.10 Aligned_cols=112 Identities=21% Similarity=0.117 Sum_probs=78.1
Q ss_pred EEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCC
Q 027706 13 IGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRL 92 (220)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 92 (220)
++++++....+++.|. ...+.-+..+...+..+.......... . .+.......++||.||
T Consensus 616 ~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~~~~k--------------v-----s~n~~R~~~~~fvsnl 675 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKEENFK--------------V-----SPNEIRDLIKIFVSNL 675 (881)
T ss_pred hhhhhhccccchhhcc-cccccccCCccccCCCCCchhhhhccC--------------c-----CchHHHHHHHHHHhhc
Confidence 7778888888888877 344444555555444332222100000 0 0001234578999999
Q ss_pred CCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 93 PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 93 p~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
+..+.+.+|...|..++.+..+++.-...+++.+|+|||+|...+++.+||.
T Consensus 676 ~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 676 SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 9999999999999999998888776555678899999999999999999874
No 141
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0018 Score=56.27 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=59.9
Q ss_pred CCCCCEEEEcCCCCCCC------HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc-CC
Q 027706 81 QRIGKKIFVGRLPQEAT------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-CG 151 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~------~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i-~g 151 (220)
......|+|.|+|---. ..-|..+|+++|+|....++.+.++| ++||.|++|.+..+|+.|++.++ .| ..
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 34567899999985322 23467899999999999999887655 99999999999999999998655 33 45
Q ss_pred eEEEEEe
Q 027706 152 QQVAIDS 158 (220)
Q Consensus 152 ~~i~v~~ 158 (220)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6666664
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.25 E-value=2.7e-05 Score=65.00 Aligned_cols=114 Identities=13% Similarity=0.191 Sum_probs=86.2
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCC-cccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFR-PVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFV 89 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~-~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 89 (220)
-||+||.+.+...|.+|++.+++.. +.++.+.+.+... ....++++-|
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~-------------------------------kkqrsrk~Qi 85 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP-------------------------------KKQRSRKIQI 85 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh-------------------------------HHHHhhhhhH
Confidence 4899999999999999999998876 6666665533311 1223456889
Q ss_pred cCCCCCCCHHHHHHHHhccCcEEEEE-eecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEec
Q 027706 90 GRLPQEATAEDLRRYFSRFGRILDVY-VPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 159 (220)
Q Consensus 90 ~nlp~~~~~~~l~~~F~~~G~i~~~~-i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a 159 (220)
.|+|+...|+.|..++..||.+..|. +..|.+| -..-|+|.+.+.+..||..+ +.+....++|.+-
T Consensus 86 rnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 86 RNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 99999999999999999999998884 4444332 24457788888888898644 4778888888775
No 143
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.23 E-value=0.0023 Score=43.71 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEE-eecCC------CCCCccceEEEEECCHHHHHHHHh-cCCccCCeE-
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY-VPKDP------KRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQ- 153 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~-i~~d~------~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~- 153 (220)
....|.|-+.|.. ....|.+.|++||.|.+.. +.++. .......+-.|+|.+..+|.+||. ++..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456888899988 5567888999999998774 11110 001123589999999999999997 566777754
Q ss_pred EEEEecc
Q 027706 154 VAIDSAT 160 (220)
Q Consensus 154 i~v~~a~ 160 (220)
+-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4577664
No 144
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.23 E-value=0.00017 Score=56.61 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=33.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGG 44 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~ 44 (220)
|++|. +++|||||+|+++++|+.|| .|++..+.++.|.|.
T Consensus 37 I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 37 IIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred EecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 45664 55689999999999999999 899999999998764
No 145
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0025 Score=54.83 Aligned_cols=64 Identities=28% Similarity=0.541 Sum_probs=48.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCC---CCccc---eEEEEECCHHHHHHHHh
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRG---FGFVTFAEEVVADRVSR 144 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~t---g~~~g---~afV~f~~~~~a~~al~ 144 (220)
...-+.+|||++||+.++|+.|...|..||.+. +.++...+. -.++| |+|+.|+++.+....|.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 345678999999999999999999999999864 455532111 12467 99999999887776554
No 146
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.20 E-value=0.00014 Score=49.38 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
.|...+|-|||.|++..+|.+|+++|++..+.++.+.|.|-.
T Consensus 52 ~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 52 NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 467789999999999999999999999999999999887643
No 147
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.18 E-value=0.0036 Score=40.87 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=39.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 146 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~ 146 (220)
....+|. +|.++...||.++|+.||.|. |.++.|. -|||...+.+.|..|+...
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 3445555 999999999999999999885 6666653 6999999999999887543
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.12 E-value=0.00018 Score=48.90 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPV 37 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~ 37 (220)
||.|..|+.+.|||||-|.+++.|.+-.+.+++.++.
T Consensus 35 LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 35 LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 6889999999999999999999999999888887743
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.05 E-value=0.00048 Score=54.45 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGG 44 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~ 44 (220)
|+.|+.++.+||||||+|.+.+.+++||. |++..+.++++.+.
T Consensus 133 i~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 133 VPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred eeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 57899999999999999999999999996 99999999998764
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.02 E-value=0.0021 Score=52.50 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=59.5
Q ss_pred CCCCCEEEEcCCCCCCCHHH----H--HHHHhccCcEEEEEeecCCCCCCc-cce--EEEEECCHHHHHHHHhcC--Ccc
Q 027706 81 QRIGKKIFVGRLPQEATAED----L--RRYFSRFGRILDVYVPKDPKRTGH-RGF--GFVTFAEEVVADRVSRRS--HEI 149 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~----l--~~~F~~~G~i~~~~i~~d~~tg~~-~g~--afV~f~~~~~a~~al~~~--~~i 149 (220)
..+..-+||-+||+.+..++ | .++|.+||.|..|.|-+...+-.+ .+. .||+|.+.++|..||... ..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 44557789999998776655 2 589999999998877554311111 122 499999999999999754 478
Q ss_pred CCeEEEEEeccC
Q 027706 150 CGQQVAIDSATP 161 (220)
Q Consensus 150 ~g~~i~v~~a~~ 161 (220)
+|+.|+..+...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999988763
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.66 E-value=0.0012 Score=55.42 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=59.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC---ccCCeEEEEEeccC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICGQQVAIDSATP 161 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~---~i~g~~i~v~~a~~ 161 (220)
.+||++||.+.++..+|+.+|...-.-.+-.++. ..||+||.+.+...|.+|++.++ ++.|.++.|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999997541111111111 34799999999999999998555 88999999999988
Q ss_pred CCCCCC
Q 027706 162 LDDAGP 167 (220)
Q Consensus 162 ~~~~~~ 167 (220)
+..+..
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 766543
No 152
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.59 E-value=0.012 Score=42.77 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=50.6
Q ss_pred CCCCEEEEcCCCC------CCCH---HHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCC
Q 027706 82 RIGKKIFVGRLPQ------EATA---EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG 151 (220)
Q Consensus 82 ~~~~~l~v~nlp~------~~~~---~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g 151 (220)
.+..+|.|.-+.+ ...+ .+|.+.|..||.+.-+++..+ .-.|+|.+-++|.+|+. ++.+|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 4456777765541 1222 267788899999888888664 58999999999999996 6779999
Q ss_pred eEEEEEeccCC
Q 027706 152 QQVAIDSATPL 162 (220)
Q Consensus 152 ~~i~v~~a~~~ 162 (220)
+.|+|+...|.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999987653
No 153
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.57 E-value=0.02 Score=35.42 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcc---CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRF---GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 146 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~---G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~ 146 (220)
..+|+|.++. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.++
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999985 67888999999988 134578888874 4889999999999998753
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.53 E-value=0.0036 Score=52.17 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=55.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCC---CCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEe
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 158 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~---tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~ 158 (220)
..|.|.||.+.++.++++.+|...|.|.++.|+.... .....-.|||.|.+...+..|-. ....+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3789999999999999999999999999998876332 12234689999999988887743 33344555555543
No 155
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.06 E-value=0.003 Score=55.13 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=40.2
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|.+-.|.--|.|+||++.+.++|.+||++||...+.++.|.|..+..
T Consensus 438 VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 438 VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 34445666789999999999999999999999999999999987643
No 156
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.92 E-value=0.0071 Score=47.72 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=54.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCC--------CCcc----ceEEEEECCHHHHHHHHh--cCCc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR--------TGHR----GFGFVTFAEEVVADRVSR--RSHE 148 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~t--------g~~~----g~afV~f~~~~~a~~al~--~~~~ 148 (220)
..-.||+++||+.+....|+++|+.||.|-.|.+.....+ +..+ --+.|+|.+...|..+.. +.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999988887665443 2222 236789999998888754 4446
Q ss_pred cCCeE
Q 027706 149 ICGQQ 153 (220)
Q Consensus 149 i~g~~ 153 (220)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 66643
No 157
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.76 E-value=0.012 Score=51.57 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHh-ccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-----ccCCeE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EICGQQ 153 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-----~i~g~~ 153 (220)
....++.|+|.||-.-.|.-+|+.++. .+|.|.+. || |+ -|..|||.|.+.++|.+....+| .-+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456788999999999999999999998 56666665 22 21 45689999999999998776666 335778
Q ss_pred EEEEecc
Q 027706 154 VAIDSAT 160 (220)
Q Consensus 154 i~v~~a~ 160 (220)
|.+.|+.
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888875
No 158
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.75 E-value=0.073 Score=38.51 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCCCCCEEEEcCCCCCCC----HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEE
Q 027706 80 SQRIGKKIFVGRLPQEAT----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQV 154 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~----~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i 154 (220)
...+..+|.|.=|..++. -..+...++.||+|.++.+.- +--|.|.|.+..+|-+|+...+ ...|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 456778888876665543 234556678999999997743 2269999999999999998766 6778888
Q ss_pred EEEecc
Q 027706 155 AIDSAT 160 (220)
Q Consensus 155 ~v~~a~ 160 (220)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888865
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.69 E-value=0.005 Score=48.59 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHh-ccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 100 DLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 100 ~l~~~F~-~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
+|...|+ +||+|+++.|..+. .-.-.|-++|.|...++|++|+..++ -+.|++|.+.+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 89999988665542 22347889999999999999998666 7899999988764
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.51 E-value=0.0055 Score=40.13 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=28.8
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
+.+-|.|.|.+.+.|++|.+.|++....++.|.|.|..
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 45789999999999999999999999999999887663
No 161
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.46 E-value=0.057 Score=43.61 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHHHHHHhccCcEEEEEeecCCCCCCcc-ceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 99 EDLRRYFSRFGRILDVYVPKDPKRTGHR-GFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 99 ~~l~~~F~~~G~i~~~~i~~d~~tg~~~-g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
+++.+.+++||.|..|.|..++...... ---||+|+..++|.+|+-.++ .+.|+.+..-|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4677889999999998887765433222 248999999999999986555 888888876553
No 162
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.14 E-value=0.0086 Score=54.07 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=37.6
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
-+||||||++....+|++||.+|...++..+.|++.|+..+-.
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 4799999999999999999999999999999998877754433
No 163
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.99 E-value=0.012 Score=49.22 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=76.8
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCC-CCCccchhh-hhhhhcccCCCCC---------CCCCC-----
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGG-YGAYNAYIS-AATRYAALGAPTL---------YDHPG----- 71 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~-~~~~~~~~~-~~~r~~~~~~~~~---------~~~~~----- 71 (220)
....-.|||.|.+...+..|. +|-+..+.+++|.|. |........ ...........+. .+.|.
T Consensus 49 pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh 127 (479)
T KOG4676|consen 49 PVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINH 127 (479)
T ss_pred cceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccC
Confidence 445668999999999999887 666677777776553 322211111 1111110000000 00000
Q ss_pred ---CCCCCCC--------CCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHH
Q 027706 72 ---SFYGRGE--------SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD 140 (220)
Q Consensus 72 ---~~~~~~~--------~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~ 140 (220)
+....+. .......+|+|.+|+..+...++.+.|..+|.|....+.. +...-+|-|+|.......
T Consensus 128 ~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~ 203 (479)
T KOG4676|consen 128 SPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSK 203 (479)
T ss_pred CccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHH
Confidence 0000000 0122336799999999999999999999999987766533 223346668887766666
Q ss_pred HHHhc
Q 027706 141 RVSRR 145 (220)
Q Consensus 141 ~al~~ 145 (220)
.|+..
T Consensus 204 halr~ 208 (479)
T KOG4676|consen 204 HALRS 208 (479)
T ss_pred HHHHh
Confidence 66643
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.02 Score=50.00 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGR 39 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r 39 (220)
+|-|..+| ++||.|++|++..+|+.|++.+++..+...
T Consensus 96 ~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 96 YPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred eccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 45677766 999999999999999999999999885544
No 165
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.65 E-value=0.52 Score=43.07 Aligned_cols=67 Identities=6% Similarity=0.073 Sum_probs=44.5
Q ss_pred CEEEEcCCC--CCCCHHHHHHHHhccCcE-----EEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 85 KKIFVGRLP--QEATAEDLRRYFSRFGRI-----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 85 ~~l~v~nlp--~~~~~~~l~~~F~~~G~i-----~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
.++|| |+. ..++..+|..++..-+.| -.|.|..+ |.||+.... .|...+..+. .+.|+.|.
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceE
Confidence 34555 333 457888888877665544 34666543 899998754 3566665544 78999999
Q ss_pred EEeccC
Q 027706 156 IDSATP 161 (220)
Q Consensus 156 v~~a~~ 161 (220)
|+.+..
T Consensus 557 ~~~~~~ 562 (629)
T PRK11634 557 MQLLGD 562 (629)
T ss_pred EEECCC
Confidence 998753
No 166
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.56 E-value=0.024 Score=48.55 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=53.3
Q ss_pred EEEcCCCCCC-CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHH-hcCCccCCeEEEEEeccCC
Q 027706 87 IFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPL 162 (220)
Q Consensus 87 l~v~nlp~~~-~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al-~~~~~i~g~~i~v~~a~~~ 162 (220)
|-+.-.|+.. +.++|..+|.+||.|..|.+-.... -|.|+|.+..+|-.|- .....|+++.|+|.|-++.
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 3333344443 5678999999999999998865422 6999999999985554 3555899999999998873
No 167
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.28 E-value=0.16 Score=44.53 Aligned_cols=69 Identities=10% Similarity=0.248 Sum_probs=54.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc--cCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh----cCCccCCeEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR----RSHEICGQQVA 155 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~--~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~----~~~~i~g~~i~ 155 (220)
...+.|.++-||.++-.++++.+|.. |-.+.+|.+..+. -=||+|++..||..|.+ ..++|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 44577888999999999999999974 7788888876642 36899999999999954 34478888776
Q ss_pred EE
Q 027706 156 ID 157 (220)
Q Consensus 156 v~ 157 (220)
.+
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 44
No 168
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.94 E-value=0.019 Score=47.20 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.8
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCC-cccccCCCCCCCc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFR-PVGRMSHGGYGAY 48 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~-~~~r~i~v~~~~~ 48 (220)
.+++|||+|.+.++|+.|.++..+.. +.++.|.+.|+..
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 46799999999999999997766644 8888888876644
No 169
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.84 E-value=0.04 Score=48.09 Aligned_cols=141 Identities=19% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhh--hhhhcccCCCCCCCCCCCCCCCCCCCC
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISA--ATRYAALGAPTLYDHPGSFYGRGESSQ 81 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
++.|-..+|..||+|-|..+|+.|++.++...+.++.|............. ..-......+.....|+ .
T Consensus 105 ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pg---------g 175 (549)
T KOG4660|consen 105 IRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPG---------G 175 (549)
T ss_pred hhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccccchhcccchhhhhccchhhcCCCC---------C
Confidence 356788999999999999999999999998888887776222211111100 00111111111111111 1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEecc
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSAT 160 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~a~ 160 (220)
..-..+|. .|++......++..++-+|.+.. + +++...---|++|.+..++..++.. +..+.+....+.++.
T Consensus 176 ~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~-----~~~~~~hq~~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S~ 248 (549)
T KOG4660|consen 176 WPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-R-----ETPLLNHQRFVEFADNRSYAFSEPRGGFLISNSSGVITFSG 248 (549)
T ss_pred CcCCccee-eeccchhhhhhhcchhccCcccc-c-----cccchhhhhhhhhccccchhhcccCCceecCCCCceEEecC
Confidence 11223333 38888888777777777776654 2 2222222567777777777555432 224444444455544
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=93.76 E-value=0.048 Score=45.15 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=43.8
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
=+|++|+++||=|-|+|.+...|+.||.-+++..+.+.+|.|.+|...+.
T Consensus 107 y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 107 YTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhccC
Confidence 47899999999999999999999999999999889998888876655443
No 171
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.67 E-value=0.016 Score=53.20 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=51.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
...+.+||++||+..+++.+|+..|..+|.|.+|.|-+.+- +.---|+||.|.+...+..|+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccch
Confidence 44568999999999999999999999999999998865422 2223489999999888888764
No 172
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.82 E-value=0.052 Score=44.63 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCCCHHH-HH--HHHhccCcEEEEEeecCCC--CCC-ccceEEEEECCHHHHHHHHhcCC--ccCCeE
Q 027706 82 RIGKKIFVGRLPQEATAED-LR--RYFSRFGRILDVYVPKDPK--RTG-HRGFGFVTFAEEVVADRVSRRSH--EICGQQ 153 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~-l~--~~F~~~G~i~~~~i~~d~~--tg~-~~g~afV~f~~~~~a~~al~~~~--~i~g~~ 153 (220)
....-+||-+|+..+..+. |+ +.|.+||.|..|.+..+.. .+. ...-++|+|...++|..||...+ .+.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3446678888887765544 43 6888999999998887652 111 12348999999999999998665 556666
Q ss_pred EEEEeccC
Q 027706 154 VAIDSATP 161 (220)
Q Consensus 154 i~v~~a~~ 161 (220)
|+..+...
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 66555543
No 173
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.74 E-value=0.29 Score=37.16 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc-cCcE---EEEEe-ecCCCCCC-ccceEEEEECCHHHHHHHHhcC--Ccc-----
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSR-FGRI---LDVYV-PKDPKRTG-HRGFGFVTFAEEVVADRVSRRS--HEI----- 149 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i---~~~~i-~~d~~tg~-~~g~afV~f~~~~~a~~al~~~--~~i----- 149 (220)
...+|.|++||+++||+++.+.++. ++.. ..+.- ..+..... .-.-|||.|.+.+++..-.... +.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999998887766 5544 23321 11111111 2356999999999877666533 211
Q ss_pred CCeEEEEEecc
Q 027706 150 CGQQVAIDSAT 160 (220)
Q Consensus 150 ~g~~i~v~~a~ 160 (220)
.-.+..|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 11355677764
No 174
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.22 E-value=0.25 Score=44.19 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=56.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...+..++||+|+...+..+-+..++..+|.|..+.... |+|..|..+..+..|+..++ .+.+..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345678999999999999999999999999987775543 99999999998888865433 6667666554
Q ss_pred e
Q 027706 158 S 158 (220)
Q Consensus 158 ~ 158 (220)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.16 E-value=0.084 Score=35.13 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=20.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHH
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYF 105 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F 105 (220)
....++|.|.|||....+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4556899999999999999998643
No 176
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.70 E-value=2.7 Score=26.80 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHhccC-----cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 94 QEATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 94 ~~~~~~~l~~~F~~~G-----~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
..++..+|..++..-+ .|-.|.|..+ |+||+.... .|..++..++ .+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888888887664 4557777654 899998764 5666666544 889999999875
No 177
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.66 E-value=1.5 Score=33.54 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=41.3
Q ss_pred CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC----ccCCeEEEEEeccCC
Q 027706 97 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATPL 162 (220)
Q Consensus 97 ~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~i~v~~a~~~ 162 (220)
..+.|+++|..++.+..+.++.. -+=..|.|.+.++|..|...++ .+.|..++|-++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888777654 2358899999999999976544 789999999988544
No 178
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=89.54 E-value=0.9 Score=28.61 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=45.5
Q ss_pred HHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEeccC
Q 027706 99 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 161 (220)
Q Consensus 99 ~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~ 161 (220)
++|.+.|...| .+.++.-+..+.+..+.-.-||+.....+-.. +.+...|++++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcc
Confidence 46788888888 78888888877777777788888776533333 5566689999999887543
No 179
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.23 E-value=0.31 Score=44.91 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=57.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC----ccCCeEEEEEeccCC
Q 027706 87 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATPL 162 (220)
Q Consensus 87 l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~i~v~~a~~~ 162 (220)
.++.|.+-..+...|-.+|+.||.|.+++.+++-. .|.|+|.+.+.|..|+..++ .+.|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 33444455677788999999999999998887744 79999999999999987555 456888999999865
Q ss_pred CCCC
Q 027706 163 DDAG 166 (220)
Q Consensus 163 ~~~~ 166 (220)
+-..
T Consensus 375 ~~~e 378 (1007)
T KOG4574|consen 375 PMYE 378 (1007)
T ss_pred cccc
Confidence 4433
No 180
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=89.10 E-value=1.3 Score=27.98 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=45.0
Q ss_pred HHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 027706 99 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 162 (220)
Q Consensus 99 ~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~~ 162 (220)
++|.+.|...| .|.++.-+..+.+..+.-.-||+++...+ .+-+.+...|++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~-~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN-NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc-ccceeehHhhCCeEEEEecCCCC
Confidence 46777777777 67788777777667777788888876654 23344555889999998876544
No 181
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=88.75 E-value=0.85 Score=42.84 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=10.2
Q ss_pred CCCCcccEEEEEecCH
Q 027706 6 GSKAHRGIGFITFASA 21 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~ 21 (220)
.+|+-++|+--.|++.
T Consensus 897 l~g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 897 LSGTQRKFAGNKFSDH 912 (1282)
T ss_pred cccchhhccccccccc
Confidence 3566666766666665
No 182
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.41 E-value=3.2 Score=33.99 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=50.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeE-EEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQ-VAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~-i~v~~a~~ 161 (220)
..-|-|-++|+... ..|..+|++||.|.+..... +| -+-+|.|.+.-+|.+||. ++..|+|.. |-|+.+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45566668877644 45678899999998775542 22 389999999999999996 555666543 34666554
Q ss_pred CC
Q 027706 162 LD 163 (220)
Q Consensus 162 ~~ 163 (220)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 183
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=88.32 E-value=0.26 Score=39.23 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=36.1
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
+|+|.|.|=|.|...++|++||+.+++..+.++.+.+...
T Consensus 120 ~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 120 AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 5999999999999999999999999998899998876544
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=88.02 E-value=0.15 Score=40.46 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=33.0
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
.-+|=.+|.|..+|+|++|++.|++-++.+++|...++
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34688999999999999999999999999999975433
No 185
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.18 E-value=0.67 Score=37.99 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
...++|++++.+.+.+.++..++...|.+....+........+++++.|.|...+.+..||.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH
Confidence 46889999999999999899999999988777776666778889999999999999999986
No 186
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=84.80 E-value=0.45 Score=43.09 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=35.1
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
-+-+-|+||.|-+..+|++|++.|++..+....+++.|+.
T Consensus 216 ~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 216 RRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 4456799999999999999999999999988888877763
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.67 E-value=12 Score=25.96 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~ 145 (220)
...+.+...|+.++.++|..+.+.+- .|..++|++|.. .++-.+.+.|.+.++|..-...
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHH
Confidence 34444555666667777776666654 466788988732 3566899999999998887653
No 188
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=81.23 E-value=1.7 Score=25.89 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=16.9
Q ss_pred cccEEEEEecCHHHHHhhC
Q 027706 10 HRGIGFITFASAVVVDRAT 28 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai 28 (220)
..-+.||+|+++.+|++||
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 4568999999999999997
No 189
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=78.84 E-value=1.2 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=29.1
Q ss_pred EEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
-||+|+..++|.+|+-.|++..+.+|.+..+|-
T Consensus 332 iFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 332 IFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred eeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 499999999999999999999999999876544
No 190
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.25 E-value=7 Score=33.37 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=47.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCc-EEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 147 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~ 147 (220)
.-.+.|=|-++|...-.+||...|..|+. --+|.++-|. .+|..|.+...|..||-..|
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 34577888999999988999999999874 3567777663 79999999999999986544
No 191
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=75.99 E-value=2.7 Score=34.93 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.1
Q ss_pred EEEEecCHHHHHhhCCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDD 33 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~ 33 (220)
|||+|+++++|..|++.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999975443
No 192
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=72.78 E-value=2.1 Score=36.99 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=27.0
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHG 43 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v 43 (220)
+++..||||+|.+.++++.||++- -..+.++.+.|
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~V 361 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNV 361 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEE
Confidence 344489999999999999999654 44577777654
No 193
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.23 E-value=5.1 Score=28.17 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=25.2
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCH
Q 027706 86 KIFVGRLPQE---------ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE 136 (220)
Q Consensus 86 ~l~v~nlp~~---------~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~ 136 (220)
++.|-|++.+ .+.+.|.+.|+.|..++ ++.+.+.. .+.|++.|.|.+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 4556666543 34578999999998775 44444422 4789999999864
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.49 E-value=31 Score=30.09 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=49.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~ 145 (220)
+..|+|=.+|..++..||..|...+- .|..|+|++|..- .+=...|.|.+.++|..-.+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHH
Confidence 78899999999999999999988765 6788999996331 344689999999999888653
No 195
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=69.41 E-value=5.5 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.9
Q ss_pred EEEEECCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 027706 129 GFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 162 (220)
Q Consensus 129 afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~~ 162 (220)
|||+|++..+|..|++..+......+.+..|-++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCc
Confidence 7999999999999998655555566677776544
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=68.33 E-value=16 Score=30.72 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=31.7
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCC
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHG 43 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v 43 (220)
++..|.|||||.|..-+..+..+-|+.|-...+.+..-.|
T Consensus 117 NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 117 NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4678999999999999999999888777666666655443
No 197
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=66.71 E-value=2.9 Score=34.75 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.2
Q ss_pred EEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 15 FITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 15 FV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
||+|.+.|||..||....+..+.||.|+..|..
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 999999999999999999999999999877663
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.29 E-value=7.8 Score=28.09 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=51.2
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFV 89 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 89 (220)
..++..+.|.+++++++++.. ....+.+..+.+. +......+ .. ........-|-|
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~------------~W~~~~~~------~~-----~~~~~~~vWVri 109 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQ------------RWSPDFNP------SE-----VKFEHIPVWVRI 109 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhh------------hhcccccc------cc-----cceeccchhhhh
Confidence 468899999999999999942 2222444444321 11100000 00 001122334556
Q ss_pred cCCCCC-CCHHHHHHHHhccCcEEEEEeec
Q 027706 90 GRLPQE-ATAEDLRRYFSRFGRILDVYVPK 118 (220)
Q Consensus 90 ~nlp~~-~~~~~l~~~F~~~G~i~~~~i~~ 118 (220)
.|||.. .+++-|..+-+.+|.+..+....
T Consensus 110 ~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 110 YGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 799977 67788999999999998876543
No 199
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.61 E-value=14 Score=30.14 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcE-EEEEeecCCCCCCccceEEEEECCH
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEE 136 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i-~~~~i~~d~~tg~~~g~afV~f~~~ 136 (220)
..-|+++||+.++.-.||+..+.+.+.+ .++.+. .+.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 3559999999999999999999888743 334331 2677899999774
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.75 E-value=35 Score=21.32 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEE
Q 027706 95 EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQV 154 (220)
Q Consensus 95 ~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i 154 (220)
.++-++++..+..|.- ..| ..| .| -=||.|.+..+|+++.... ..+....+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d-~t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDD-RT-----GFYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--Eec-CC-----EEEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 4678899999999963 333 333 22 3689999999999997643 34444443
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=62.65 E-value=21 Score=29.22 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=58.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCC-------CCCccceEEEEECCHHHHHHH----HhcCC--
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK-------RTGHRGFGFVTFAEEVVADRV----SRRSH-- 147 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~-------tg~~~g~afV~f~~~~~a~~a----l~~~~-- 147 (220)
.-.++.|.+.|+..+++-..+...|.+||+|++|.++.+.. ..+......+.|-+.+.+..- |+++.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34457788899998888888888999999999999988751 122345688889888877653 44443
Q ss_pred --ccCCeEEEEEecc
Q 027706 148 --EICGQQVAIDSAT 160 (220)
Q Consensus 148 --~i~g~~i~v~~a~ 160 (220)
.+....|.+.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 5666777777654
No 202
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.14 E-value=35 Score=21.03 Aligned_cols=18 Identities=39% Similarity=0.914 Sum_probs=15.1
Q ss_pred HHHHHHHhccCcEEEEEe
Q 027706 99 EDLRRYFSRFGRILDVYV 116 (220)
Q Consensus 99 ~~l~~~F~~~G~i~~~~i 116 (220)
.+|+++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976654
No 203
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=54.96 E-value=9.3 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=29.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 114 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~ 114 (220)
......+||+-|+|...+++.|..+.+.+|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34556889999999999999999999999865543
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.09 E-value=25 Score=23.37 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEECCHHHHHHHHhcCC---ccCCeEEEEE
Q 027706 129 GFVTFAEEVVADRVSRRSH---EICGQQVAID 157 (220)
Q Consensus 129 afV~f~~~~~a~~al~~~~---~i~g~~i~v~ 157 (220)
|.|+|.+..-|.+.++... .+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 6899999999999987433 5566555554
No 205
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=52.68 E-value=9.2 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.0
Q ss_pred EEEEEecCHHHHHhhCCCCC
Q 027706 13 IGFITFASAVVVDRATPKED 32 (220)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~~~~ 32 (220)
-|||.|.++++|++|++.+.
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEESS---HHHHHHHHH
T ss_pred EEEEEECCcchHHHHHHHHH
Confidence 58999999999999995543
No 206
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.55 E-value=14 Score=28.05 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCCCCH-----HHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCe-EEE
Q 027706 84 GKKIFVGRLPQEATA-----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QVA 155 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~-----~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~-~i~ 155 (220)
...+++.+++..+-. .....+|.++-+....++++ +.+..-|.|.+.+.|..|...+| .+.+. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 345667777765432 23455666665554445544 34467788999999999977666 77777 778
Q ss_pred EEeccCCCC
Q 027706 156 IDSATPLDD 164 (220)
Q Consensus 156 v~~a~~~~~ 164 (220)
.-++.+-..
T Consensus 84 ~yfaQ~~~~ 92 (193)
T KOG4019|consen 84 LYFAQPGHP 92 (193)
T ss_pred EEEccCCCc
Confidence 778876543
No 207
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=50.36 E-value=4.3 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=28.2
Q ss_pred cEEEEEecCHHHHHhhCCCCCCCCcccccCCCCC
Q 027706 12 GIGFITFASAVVVDRATPKEDDFRPVGRMSHGGY 45 (220)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~ 45 (220)
+--+|+|.+-++|-+|+ .+++.++.++.|.+..
T Consensus 71 ~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRL 103 (146)
T ss_dssp TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE
T ss_pred CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEe
Confidence 34689999999999999 7889899999987643
No 208
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=48.96 E-value=13 Score=33.41 Aligned_cols=42 Identities=2% Similarity=0.043 Sum_probs=32.0
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCC---cccccCCCCCCCccchh
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFR---PVGRMSHGGYGAYNAYI 52 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~---~~~r~i~v~~~~~~~~~ 52 (220)
|-.|||.|.+.++|.+.+..||+.. -..+.|.+.|+.....+
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELD 525 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHH
Confidence 4579999999999999999999876 34455666676554444
No 209
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.03 E-value=30 Score=28.20 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCCC------------CCHHHHHHHHhccCcEEEEEeec
Q 027706 83 IGKKIFVGRLPQE------------ATAEDLRRYFSRFGRILDVYVPK 118 (220)
Q Consensus 83 ~~~~l~v~nlp~~------------~~~~~l~~~F~~~G~i~~~~i~~ 118 (220)
...+|++.+||-. .+++.|...|..||.|..+.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3457777777732 35678999999999999887643
No 210
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.99 E-value=96 Score=20.40 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=38.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh
Q 027706 86 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~-~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~ 144 (220)
+.|+--++..++..+|++.++. |+ .|..|..+.-+. ..--|||.+.....|..+..
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 3455567889999999998887 44 456665544332 22369999998888777643
No 211
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=40.88 E-value=65 Score=21.31 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=33.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEEC
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 134 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~ 134 (220)
+...-|||++++..+-|.-...+.+..+.-.-+-+..+.. ..||+|-..-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n---eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN---EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC---CCCEEEEEeC
Confidence 4456799999998888776666666554444444444322 6789998773
No 212
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.42 E-value=1e+02 Score=19.83 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=37.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcc-C-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHH
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRF-G-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 143 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~-G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al 143 (220)
+-|+-.++..++..+|+..++.. + .|..|..+.-+. ..--|||++..-+.|..+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 45666788999999999888864 4 455564443322 2235999998877776653
No 213
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.36 E-value=43 Score=21.81 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.3
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCC
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFR 35 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~ 35 (220)
..+||=|||=.++.++..|++.+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 478999999999999999997766543
No 214
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=36.32 E-value=1.5e+02 Score=20.87 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHhccC----cEEE-EEeecCCCCCCccceEEEEECCHHHHHHH
Q 027706 95 EATAEDLRRYFSRFG----RILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRV 142 (220)
Q Consensus 95 ~~~~~~l~~~F~~~G----~i~~-~~i~~d~~tg~~~g~afV~f~~~~~a~~a 142 (220)
+++.++|++-+...= .... ..+-..-..|++.|||.| |++.+.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 577888887665431 1111 233333356788999987 6777665543
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.95 E-value=9.2 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.2
Q ss_pred EEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
++|+|...|+|..||...++....++.+...+..
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 7999999999999999999998888887655553
No 216
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=33.32 E-value=2.5e+02 Score=24.57 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.7
Q ss_pred cceEEEEE
Q 027706 126 RGFGFVTF 133 (220)
Q Consensus 126 ~g~afV~f 133 (220)
.|.+++.+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 35554433
No 217
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=33.12 E-value=30 Score=20.75 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=8.9
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
.++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 478999999887
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.10 E-value=78 Score=28.67 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcc----CcEEEEEeec
Q 027706 81 QRIGKKIFVGRLPQE-ATAEDLRRYFSRF----GRILDVYVPK 118 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~-~~~~~l~~~F~~~----G~i~~~~i~~ 118 (220)
...+++|-|-||.|. +..++|.-+|+.| |.|.+|.|..
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp 213 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP 213 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech
Confidence 567899999999986 7788999998876 5788887754
No 219
>COG4907 Predicted membrane protein [Function unknown]
Probab=30.67 E-value=54 Score=28.86 Aligned_cols=10 Identities=10% Similarity=0.640 Sum_probs=4.4
Q ss_pred HHHHHHhccC
Q 027706 100 DLRRYFSRFG 109 (220)
Q Consensus 100 ~l~~~F~~~G 109 (220)
..+.+++.|.
T Consensus 490 aFKnfLsd~s 499 (595)
T COG4907 490 AFKNFLSDYS 499 (595)
T ss_pred HHHHHHHhHH
Confidence 3444444443
No 220
>PRK15464 cold shock-like protein CspH; Provisional
Probab=29.11 E-value=29 Score=21.96 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.6
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 458999997443
No 221
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.74 E-value=47 Score=18.06 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHhccC
Q 027706 95 EATAEDLRRYFSRFG 109 (220)
Q Consensus 95 ~~~~~~l~~~F~~~G 109 (220)
.+++++|++.|.+..
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578999999998754
No 222
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=28.37 E-value=95 Score=20.48 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHhccCc
Q 027706 95 EATAEDLRRYFSRFGR 110 (220)
Q Consensus 95 ~~~~~~l~~~F~~~G~ 110 (220)
+.+.+++.+++..|-.
T Consensus 61 ~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 61 EPTQEEVDDFLGGYDA 76 (85)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4577788888877743
No 223
>PRK14998 cold shock-like protein CspD; Provisional
Probab=28.12 E-value=35 Score=21.73 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=8.8
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 468999997443
No 224
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=27.94 E-value=36 Score=21.77 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=8.2
Q ss_pred CcccEEEEEec
Q 027706 9 AHRGIGFITFA 19 (220)
Q Consensus 9 ~srG~aFV~F~ 19 (220)
..|||+||+=.
T Consensus 11 ~~KGfGFI~~~ 21 (74)
T PRK09937 11 NAKGFGFICPE 21 (74)
T ss_pred CCCCeEEEeeC
Confidence 46899999643
No 225
>PRK15463 cold shock-like protein CspF; Provisional
Probab=27.44 E-value=33 Score=21.62 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=8.5
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 358999997443
No 226
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=2.1e+02 Score=19.67 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHH
Q 027706 98 AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 143 (220)
Q Consensus 98 ~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al 143 (220)
+.+|..+++..| |.+-.|..|..+ ..-|+++++.|.+...++|
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 346778888887 555555555433 3459999999666555555
No 227
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.20 E-value=98 Score=25.09 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=23.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEE
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVY 115 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~ 115 (220)
.....|+|||++++..-|..++...-.+....
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v 126 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMV 126 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEE
Confidence 34667999999999999998887654443333
No 228
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=26.75 E-value=14 Score=33.08 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=19.0
Q ss_pred EEEecCHHHHHhhCCCCCCCC--cccccC
Q 027706 15 FITFASAVVVDRATPKEDDFR--PVGRMS 41 (220)
Q Consensus 15 FV~F~~~~~A~~Ai~~~~~~~--~~~r~i 41 (220)
||+|++.+||+.|...|.... +.+++|
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 899999999999984443322 444444
No 229
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.34 E-value=75 Score=19.42 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=19.9
Q ss_pred EECCHHHHHHHHhcCCccCCeEEEEEecc
Q 027706 132 TFAEEVVADRVSRRSHEICGQQVAIDSAT 160 (220)
Q Consensus 132 ~f~~~~~a~~al~~~~~i~g~~i~v~~a~ 160 (220)
.|.+.++...||.......+..+.|....
T Consensus 9 ~F~~~~e~k~av~~yai~~~~~~~v~ksd 37 (67)
T PF03108_consen 9 TFPSKEEFKEAVREYAIKNGFEFKVKKSD 37 (67)
T ss_pred EECCHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 68899999999876554455555555443
No 230
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=26.26 E-value=34 Score=21.42 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=8.7
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 13 ~~kGyGFI~~~~ 24 (69)
T PRK09507 13 ESKGFGFITPED 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 458999998443
No 231
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.08 E-value=1.3e+02 Score=20.36 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCH
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE 136 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~ 136 (220)
+...-|||++++..+.+.-...+-+.++.-.-+-+..+ +. -.||+|-++.+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NT-ESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CC-CCCcEEEecCCC
Confidence 44567999999888776644444454443333333333 22 338999887653
No 232
>PRK10943 cold shock-like protein CspC; Provisional
Probab=25.72 E-value=35 Score=21.39 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=8.5
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 458999998443
No 233
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.87 E-value=1.5e+02 Score=19.53 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=19.7
Q ss_pred cEEEEEeecCCCCCCccceEEEEECC
Q 027706 110 RILDVYVPKDPKRTGHRGFGFVTFAE 135 (220)
Q Consensus 110 ~i~~~~i~~d~~tg~~~g~afV~f~~ 135 (220)
+|++++|-.-...++-+++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36777776655558889999999987
No 234
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=24.52 E-value=45 Score=20.77 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=8.9
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 468999998544
No 235
>PHA01632 hypothetical protein
Probab=24.13 E-value=87 Score=18.79 Aligned_cols=21 Identities=33% Similarity=0.755 Sum_probs=16.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhc
Q 027706 87 IFVGRLPQEATAEDLRRYFSR 107 (220)
Q Consensus 87 l~v~nlp~~~~~~~l~~~F~~ 107 (220)
|.|..+|...|+++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999987764
No 236
>PRK09890 cold shock protein CspG; Provisional
Probab=23.74 E-value=41 Score=21.14 Aligned_cols=11 Identities=55% Similarity=0.881 Sum_probs=8.2
Q ss_pred CcccEEEEEec
Q 027706 9 AHRGIGFITFA 19 (220)
Q Consensus 9 ~srG~aFV~F~ 19 (220)
..|||+||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK09890 14 ADKGFGFITPD 24 (70)
T ss_pred CCCCcEEEecC
Confidence 34899999844
No 237
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=23.71 E-value=41 Score=21.10 Aligned_cols=10 Identities=50% Similarity=0.889 Sum_probs=7.7
Q ss_pred cccEEEEEec
Q 027706 10 HRGIGFITFA 19 (220)
Q Consensus 10 srG~aFV~F~ 19 (220)
.|||+||+=.
T Consensus 15 ~kGfGFI~~~ 24 (70)
T PRK10354 15 DKGFGFITPD 24 (70)
T ss_pred CCCcEEEecC
Confidence 4899999833
No 238
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.65 E-value=1.3e+02 Score=24.58 Aligned_cols=8 Identities=25% Similarity=0.027 Sum_probs=3.0
Q ss_pred CCCCCCCH
Q 027706 91 RLPQEATA 98 (220)
Q Consensus 91 nlp~~~~~ 98 (220)
+|...+|+
T Consensus 119 GLEg~ltD 126 (271)
T COG1512 119 GLEGVLTD 126 (271)
T ss_pred CcccccCh
Confidence 33333333
No 239
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=22.25 E-value=1.5e+02 Score=24.25 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=3.5
Q ss_pred HHHHHhc
Q 027706 101 LRRYFSR 107 (220)
Q Consensus 101 l~~~F~~ 107 (220)
-.++|.+
T Consensus 83 a~rlfd~ 89 (271)
T COG1512 83 ATRLFDK 89 (271)
T ss_pred HHHHHHh
Confidence 3455555
No 240
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=21.45 E-value=43 Score=25.62 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=26.0
Q ss_pred cEEEEEecCHHHHHhhCCCCC--CCCcccccCCCCCC
Q 027706 12 GIGFITFASAVVVDRATPKED--DFRPVGRMSHGGYG 46 (220)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~~~--~~~~~~r~i~v~~~ 46 (220)
+=..|.|.+.++|.+|...++ +..+.+..+++.|+
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 346799999999999999988 67788888887776
No 241
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=21.06 E-value=1.8e+02 Score=26.39 Aligned_cols=37 Identities=24% Similarity=0.124 Sum_probs=31.2
Q ss_pred ccceEEEEECCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 027706 125 HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 162 (220)
Q Consensus 125 ~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~~ 162 (220)
.+|-|.| |+++++|.+|+.++..-.|..|.|++.-|+
T Consensus 382 ~~G~A~V-F~see~a~~ai~~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 382 FEGPAKV-FESEEEALEAILGGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEEeEEE-ECCHHHHHHHHhcCCCCCCeEEEEeCCCCC
Confidence 5677755 999999999999877677889999998777
No 242
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=21.01 E-value=1.7e+02 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=31.1
Q ss_pred ccceEEEEECCHHHHHHHHhcCCccCCeEEEEEeccCCC
Q 027706 125 HRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPLD 163 (220)
Q Consensus 125 ~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~~~ 163 (220)
.+|-|. .|+++++|.+|+.++..-.|..|.|++.-|+.
T Consensus 447 ~~GpA~-VFdsee~a~~ai~~g~I~~gdVvVIRyeGPkG 484 (615)
T PRK12448 447 FTGPAR-VFESQDDAVEAILGGKVKAGDVVVIRYEGPKG 484 (615)
T ss_pred EEEeEE-EECCHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Confidence 456665 59999999999998776678899999887764
No 243
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=20.78 E-value=43 Score=29.03 Aligned_cols=25 Identities=4% Similarity=0.113 Sum_probs=21.0
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFR 35 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~ 35 (220)
+=+|+|+|...+.|.+|.+.|+...
T Consensus 286 k~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 286 KECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred hhhhhhhhhhhHHHHHHHHhhchhh
Confidence 5689999999999999998775443
Done!