Query 027706
Match_columns 220
No_of_seqs 263 out of 2397
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 23:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.3E-29 7.8E-34 193.2 12.2 143 1-167 45-188 (196)
2 2qfj_A FBP-interacting repress 100.0 5.2E-29 1.8E-33 194.0 12.7 148 1-166 60-209 (216)
3 2cjk_A Nuclear polyadenylated 100.0 4.5E-28 1.5E-32 181.3 11.1 132 1-163 35-167 (167)
4 4f02_A Polyadenylate-binding p 99.9 2.6E-28 8.9E-33 190.3 9.0 136 1-165 47-184 (213)
5 2yh0_A Splicing factor U2AF 65 99.9 8.7E-28 3E-32 184.6 10.3 151 4-164 44-196 (198)
6 1b7f_A Protein (SXL-lethal pro 99.9 1.3E-27 4.6E-32 178.8 10.3 130 1-159 35-168 (168)
7 3md3_A Nuclear and cytoplasmic 99.9 2.1E-27 7.3E-32 177.2 10.8 132 2-161 33-166 (166)
8 1fxl_A Paraneoplastic encephal 99.9 2.3E-27 8E-32 177.1 10.3 130 1-159 34-167 (167)
9 2kn4_A Immunoglobulin G-bindin 99.9 2.1E-27 7.2E-32 176.8 8.5 144 8-167 10-155 (158)
10 1fje_B Nucleolin RBD12, protei 99.9 4.4E-27 1.5E-31 177.4 8.7 130 1-163 44-175 (175)
11 2g4b_A Splicing factor U2AF 65 99.9 7.4E-27 2.5E-31 175.5 9.1 126 5-160 45-172 (172)
12 3nmr_A Cugbp ELAV-like family 99.9 6.7E-26 2.3E-30 170.5 10.4 131 1-160 35-175 (175)
13 3smz_A Protein raver-1, ribonu 99.9 4.1E-26 1.4E-30 185.0 9.3 138 1-165 127-267 (284)
14 2ghp_A U4/U6 snRNA-associated 99.9 8.5E-26 2.9E-30 183.8 10.9 139 1-163 150-292 (292)
15 2adc_A Polypyrimidine tract-bi 99.9 5.8E-24 2E-28 167.4 12.8 145 11-162 72-228 (229)
16 3pgw_A U1-A; protein-RNA compl 99.9 7.1E-24 2.4E-28 171.6 13.5 149 7-160 48-281 (282)
17 3tyt_A Heterogeneous nuclear r 99.9 1.2E-24 4.2E-29 168.4 7.4 148 10-159 41-204 (205)
18 1qm9_A Polypyrimidine tract-bi 99.9 5.9E-24 2E-28 163.4 10.0 145 11-162 41-197 (198)
19 3smz_A Protein raver-1, ribonu 99.9 7.7E-24 2.6E-28 171.6 10.6 122 8-164 54-177 (284)
20 2i2y_A Fusion protein consists 99.9 4.7E-24 1.6E-28 157.3 8.0 138 7-163 9-149 (150)
21 3sde_A Paraspeckle component 1 99.9 2.2E-23 7.4E-28 167.2 8.2 122 8-165 55-182 (261)
22 2ghp_A U4/U6 snRNA-associated 99.9 5.4E-23 1.8E-27 167.2 9.6 124 2-165 74-200 (292)
23 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-22 7.6E-27 138.0 10.4 81 81-161 16-98 (99)
24 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.6E-22 2.3E-26 146.7 12.5 86 80-165 35-122 (156)
25 2lea_A Serine/arginine-rich sp 99.9 2.2E-22 7.4E-27 145.8 9.4 124 13-166 6-131 (135)
26 2lxi_A RNA-binding protein 10; 99.9 3.9E-22 1.3E-26 134.7 8.3 82 84-165 1-86 (91)
27 3pgw_S U1-70K; protein-RNA com 99.9 7.4E-22 2.5E-26 168.7 11.1 84 81-164 99-184 (437)
28 2cqg_A TDP-43, TAR DNA-binding 99.9 5.6E-21 1.9E-25 131.9 13.3 88 80-167 11-98 (103)
29 2cqd_A RNA-binding region cont 99.9 2.2E-20 7.6E-25 131.6 15.9 86 80-165 13-99 (116)
30 2dgs_A DAZ-associated protein 99.9 9.6E-21 3.3E-25 129.8 13.1 88 80-167 6-94 (99)
31 1whw_A Hypothetical protein ri 99.9 1.6E-20 5.4E-25 128.6 13.2 86 81-166 5-92 (99)
32 2dgo_A Cytotoxic granule-assoc 99.9 3.7E-20 1.3E-24 130.3 15.2 88 80-167 11-100 (115)
33 2cq0_A Eukaryotic translation 99.8 1.1E-20 3.6E-25 130.5 11.8 88 80-167 11-100 (103)
34 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-20 5E-25 132.4 12.7 88 80-167 21-110 (115)
35 2dnm_A SRP46 splicing factor; 99.8 1E-20 3.4E-25 130.6 11.6 88 80-167 9-98 (103)
36 3s8s_A Histone-lysine N-methyl 99.8 7.3E-21 2.5E-25 132.9 10.9 83 82-164 4-88 (110)
37 1x5u_A Splicing factor 3B subu 99.8 2.2E-20 7.5E-25 129.3 13.2 87 80-166 11-99 (105)
38 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.7E-21 1.6E-25 143.4 10.4 143 16-167 11-157 (165)
39 2lkz_A RNA-binding protein 5; 99.8 2E-21 6.7E-26 132.1 7.4 82 80-161 5-94 (95)
40 2dnz_A Probable RNA-binding pr 99.8 2.2E-20 7.7E-25 126.9 12.3 83 83-165 4-88 (95)
41 3q2s_C Cleavage and polyadenyl 99.8 1.3E-21 4.6E-26 153.8 6.7 80 83-162 67-150 (229)
42 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5.2E-25 129.4 10.8 88 80-167 8-97 (102)
43 1x5t_A Splicing factor 3B subu 99.8 1.5E-20 5.3E-25 127.9 10.5 84 83-166 4-90 (96)
44 2fy1_A RNA-binding motif prote 99.8 3.5E-20 1.2E-24 130.7 12.7 84 81-165 4-89 (116)
45 2cph_A RNA binding motif prote 99.8 3.8E-20 1.3E-24 128.5 12.6 88 80-167 11-102 (107)
46 1wi8_A EIF-4B, eukaryotic tran 99.8 4.3E-20 1.5E-24 127.7 12.7 85 80-166 11-98 (104)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 4.1E-20 1.4E-24 127.9 12.6 86 81-167 12-102 (105)
48 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 6.9E-25 128.8 10.9 88 80-167 8-97 (102)
49 1u6f_A Tcubp1, RNA-binding pro 99.8 6.6E-20 2.3E-24 133.2 14.2 86 80-165 38-125 (139)
50 2dng_A Eukaryotic translation 99.8 5.5E-20 1.9E-24 126.9 13.0 85 80-166 11-97 (103)
51 2do4_A Squamous cell carcinoma 99.8 5.7E-20 2E-24 126.1 13.0 85 80-165 13-99 (100)
52 2dgp_A Bruno-like 4, RNA bindi 99.8 2.5E-20 8.5E-25 129.2 11.0 87 80-166 9-100 (106)
53 1x4h_A RNA-binding protein 28; 99.8 6.6E-20 2.3E-24 128.1 13.2 88 80-167 11-106 (111)
54 3md1_A Nuclear and cytoplasmic 99.8 3E-20 1E-24 123.0 10.6 79 85-163 2-82 (83)
55 2d9p_A Polyadenylate-binding p 99.8 4.5E-20 1.5E-24 127.3 11.7 86 80-167 11-98 (103)
56 2dh8_A DAZ-associated protein 99.8 2.5E-20 8.7E-25 129.0 10.5 88 80-167 12-100 (105)
57 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.8E-20 9.4E-25 124.3 9.9 81 82-162 4-86 (87)
58 2rs2_A Musashi-1, RNA-binding 99.8 5.5E-20 1.9E-24 128.3 11.8 86 80-165 21-107 (109)
59 2dhg_A TRNA selenocysteine ass 99.8 5.2E-20 1.8E-24 127.1 10.9 86 81-167 6-95 (104)
60 2cpe_A RNA-binding protein EWS 99.8 6.2E-20 2.1E-24 128.7 11.4 87 80-166 11-107 (113)
61 1x4b_A Heterogeneous nuclear r 99.8 6.8E-20 2.3E-24 129.1 11.7 86 81-166 24-110 (116)
62 3ex7_B RNA-binding protein 8A; 99.8 3.9E-20 1.3E-24 132.2 10.3 86 80-165 18-105 (126)
63 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-19 4.1E-24 123.0 12.1 81 80-160 12-94 (94)
64 3s7r_A Heterogeneous nuclear r 99.8 9.5E-20 3.3E-24 121.8 11.4 80 80-159 7-87 (87)
65 2cpf_A RNA binding motif prote 99.8 4.5E-20 1.5E-24 126.1 10.1 85 83-167 4-93 (98)
66 3p5t_L Cleavage and polyadenyl 99.8 7.2E-21 2.4E-25 128.2 5.5 81 85-165 2-86 (90)
67 1p27_B RNA-binding protein 8A; 99.8 5.9E-20 2E-24 127.3 10.4 85 80-164 19-105 (106)
68 2cqc_A Arginine/serine-rich sp 99.8 1.1E-19 3.8E-24 123.4 11.5 82 80-161 11-94 (95)
69 2x1f_A MRNA 3'-END-processing 99.8 8.4E-20 2.9E-24 124.3 10.8 81 84-164 2-84 (96)
70 1oo0_B CG8781-PA, drosophila Y 99.8 7.2E-20 2.5E-24 127.8 10.6 86 80-165 22-109 (110)
71 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.4E-19 1.2E-23 122.9 13.7 86 80-167 11-98 (103)
72 2jrs_A RNA-binding protein 39; 99.8 1.1E-19 3.7E-24 126.6 11.0 84 80-163 22-107 (108)
73 2cq3_A RNA-binding protein 9; 99.8 3.8E-19 1.3E-23 122.6 13.7 86 80-167 11-98 (103)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.1E-20 2.8E-24 121.5 9.7 80 81-160 4-85 (85)
75 4f25_A Polyadenylate-binding p 99.8 7.2E-20 2.5E-24 128.9 9.8 81 84-166 5-87 (115)
76 2div_A TRNA selenocysteine ass 99.8 1E-19 3.6E-24 124.5 10.0 84 80-163 5-95 (99)
77 2do0_A HnRNP M, heterogeneous 99.8 7.3E-19 2.5E-23 123.4 14.5 85 80-165 11-97 (114)
78 2kxn_B Transformer-2 protein h 99.8 8.4E-20 2.9E-24 131.1 9.7 85 80-164 42-128 (129)
79 2dgx_A KIAA0430 protein; RRM d 99.8 2.4E-19 8.3E-24 122.1 11.4 82 81-165 6-93 (96)
80 1x4c_A Splicing factor, argini 99.8 8.6E-19 2.9E-23 122.0 14.3 79 80-165 11-96 (108)
81 2hgn_A Heterogeneous nuclear r 99.8 1.4E-20 4.6E-25 136.6 5.3 123 11-163 1-124 (139)
82 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-19 4.1E-24 124.8 9.2 80 81-166 13-96 (105)
83 1wg5_A Heterogeneous nuclear r 99.8 5.1E-19 1.8E-23 122.3 12.5 83 80-163 11-95 (104)
84 3ucg_A Polyadenylate-binding p 99.8 3.1E-19 1.1E-23 119.7 11.1 79 83-162 5-85 (89)
85 2dis_A Unnamed protein product 99.8 5.4E-19 1.8E-23 123.1 12.6 85 82-166 6-96 (109)
86 3ns6_A Eukaryotic translation 99.8 2E-20 6.9E-25 128.5 5.2 81 83-163 5-94 (100)
87 4a8x_A RNA-binding protein wit 99.8 1.3E-19 4.5E-24 121.2 8.9 82 83-164 3-87 (88)
88 2cq4_A RNA binding motif prote 99.8 4.5E-20 1.5E-24 129.7 7.0 83 81-164 22-106 (114)
89 2khc_A Testis-specific RNP-typ 99.8 3.2E-19 1.1E-23 126.0 11.3 81 80-160 36-118 (118)
90 2la6_A RNA-binding protein FUS 99.8 2.3E-19 8E-24 122.8 10.2 81 80-160 9-99 (99)
91 2dgw_A Probable RNA-binding pr 99.8 5.2E-19 1.8E-23 119.2 11.7 82 80-164 6-89 (91)
92 2m2b_A RNA-binding protein 10; 99.8 1.9E-19 6.6E-24 129.6 10.1 85 80-165 19-111 (131)
93 2dgv_A HnRNP M, heterogeneous 99.8 4.1E-19 1.4E-23 119.9 10.7 84 80-165 4-89 (92)
94 1x4a_A Splicing factor, argini 99.8 1E-18 3.4E-23 121.8 12.9 83 80-165 18-102 (109)
95 1s79_A Lupus LA protein; RRM, 99.8 2.5E-19 8.6E-24 123.6 9.6 80 81-161 8-88 (103)
96 2jwn_A Embryonic polyadenylate 99.8 1.3E-18 4.5E-23 123.9 13.6 81 83-164 35-117 (124)
97 3n9u_C Cleavage and polyadenyl 99.8 2.2E-19 7.4E-24 133.0 9.7 80 83-162 54-137 (156)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 4.1E-19 1.4E-23 122.3 10.3 81 81-163 12-93 (102)
99 2ywk_A Putative RNA-binding pr 99.8 3.6E-19 1.2E-23 120.9 9.9 81 80-161 12-94 (95)
100 2cq1_A PTB-like protein L; RRM 99.8 1.5E-18 5E-23 119.1 12.9 81 80-166 11-95 (101)
101 2fc9_A NCL protein; structure 99.8 1.4E-18 4.9E-23 119.3 12.5 82 80-165 11-94 (101)
102 3ulh_A THO complex subunit 4; 99.8 5.3E-19 1.8E-23 122.7 10.3 80 80-160 25-106 (107)
103 2cpi_A CCR4-NOT transcription 99.8 5.1E-19 1.7E-23 123.7 10.2 84 80-163 11-102 (111)
104 2cqp_A RNA-binding protein 12; 99.8 2.2E-19 7.4E-24 122.7 8.1 82 81-162 12-95 (98)
105 2hgl_A HNRPF protein, heteroge 99.8 1.9E-19 6.4E-24 130.2 8.0 81 80-162 40-125 (136)
106 2dgu_A Heterogeneous nuclear r 99.8 2.4E-18 8.1E-23 118.6 13.2 80 80-167 7-88 (103)
107 1p1t_A Cleavage stimulation fa 99.8 1.2E-19 4.3E-24 125.2 6.7 85 81-165 5-91 (104)
108 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-19 6.2E-24 123.7 7.3 82 80-163 15-99 (100)
109 2mss_A Protein (musashi1); RNA 99.8 2.3E-19 7.9E-24 116.5 7.4 74 86-159 1-75 (75)
110 1wex_A Hypothetical protein (r 99.8 2.1E-18 7.3E-23 119.0 12.4 81 80-166 11-95 (104)
111 2cpy_A RNA-binding protein 12; 99.8 3.6E-19 1.2E-23 125.1 8.7 82 81-163 12-95 (114)
112 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.9E-18 1E-22 124.5 13.7 80 80-159 59-140 (140)
113 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.7E-23 118.9 10.6 78 80-163 17-98 (100)
114 2fc8_A NCL protein; structure 99.8 9.9E-19 3.4E-23 120.2 10.5 83 80-165 11-95 (102)
115 1x4d_A Matrin 3; structural ge 99.8 7.5E-19 2.6E-23 120.6 9.8 79 81-165 12-95 (102)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-19 6E-24 117.6 6.4 75 85-159 1-76 (77)
117 2ad9_A Polypyrimidine tract-bi 99.8 1E-18 3.5E-23 123.0 10.1 81 80-166 27-111 (119)
118 2dnq_A RNA-binding protein 4B; 99.8 2.4E-18 8.2E-23 115.7 11.3 78 81-166 5-84 (90)
119 2kt5_A RNA and export factor-b 99.8 1.9E-18 6.5E-23 123.1 11.3 87 80-167 31-119 (124)
120 1x4e_A RNA binding motif, sing 99.8 2E-19 6.9E-24 119.6 5.8 78 83-160 4-83 (85)
121 1x5o_A RNA binding motif, sing 99.8 3E-18 1E-22 120.2 12.0 82 80-162 21-112 (114)
122 1iqt_A AUF1, heterogeneous nuc 99.8 2.9E-19 1E-23 116.0 6.2 74 86-159 1-75 (75)
123 2cpx_A Hypothetical protein FL 99.8 6.2E-19 2.1E-23 123.9 8.2 87 81-167 22-110 (115)
124 2xs2_A Deleted in azoospermia- 99.8 4.4E-19 1.5E-23 122.1 7.1 85 80-165 5-89 (102)
125 3d2w_A TAR DNA-binding protein 99.8 1.5E-18 5E-23 116.5 9.3 81 80-165 7-87 (89)
126 2ek1_A RNA-binding protein 12; 99.8 2.7E-19 9.4E-24 121.4 5.7 80 82-161 13-94 (95)
127 1why_A Hypothetical protein ri 99.8 5E-18 1.7E-22 115.7 11.7 78 81-164 14-95 (97)
128 2nlw_A Eukaryotic translation 99.8 3.7E-18 1.2E-22 118.2 11.0 81 81-163 12-101 (105)
129 2dgt_A RNA-binding protein 30; 99.8 5.7E-18 1.9E-22 114.3 11.6 80 80-167 6-87 (92)
130 2ki2_A SS-DNA binding protein 99.8 2.3E-19 7.8E-24 120.7 4.4 80 85-165 2-83 (90)
131 2hvz_A Splicing factor, argini 99.8 3.3E-18 1.1E-22 117.5 10.3 76 85-165 1-78 (101)
132 2dnn_A RNA-binding protein 12; 99.8 1.3E-18 4.3E-23 121.1 8.2 80 81-162 13-93 (109)
133 1wel_A RNA-binding protein 12; 99.8 6.5E-19 2.2E-23 125.6 6.8 83 80-163 21-105 (124)
134 1x4f_A Matrin 3; structural ge 99.8 2.5E-18 8.4E-23 119.8 9.4 80 81-166 22-106 (112)
135 2db1_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 122.7 8.4 82 81-163 14-99 (118)
136 2err_A Ataxin-2-binding protei 99.8 1.8E-18 6.2E-23 120.5 8.7 81 80-162 25-107 (109)
137 1wf0_A TDP-43, TAR DNA-binding 99.8 1.6E-18 5.5E-23 116.1 8.1 79 83-166 4-82 (88)
138 1x4g_A Nucleolysin TIAR; struc 99.8 6.4E-18 2.2E-22 117.6 11.3 81 81-167 22-104 (109)
139 1fj7_A Nucleolin RBD1, protein 99.8 4.1E-19 1.4E-23 122.0 5.0 84 81-165 14-98 (101)
140 2cpd_A Apobec-1 stimulating pr 99.8 2E-17 6.9E-22 113.1 13.2 78 80-165 11-92 (99)
141 2wbr_A GW182, gawky, LD47780P; 99.8 4.2E-18 1.4E-22 112.3 9.2 73 82-160 5-79 (89)
142 2lcw_A RNA-binding protein FUS 99.6 5.4E-20 1.9E-24 129.7 0.0 85 81-165 4-98 (116)
143 2a3j_A U1 small nuclear ribonu 99.8 7.2E-18 2.5E-22 120.4 10.8 81 81-164 26-112 (127)
144 2hgm_A HNRPF protein, heteroge 99.8 1.6E-18 5.4E-23 123.5 7.0 80 81-162 39-121 (126)
145 2cpj_A Non-POU domain-containi 99.8 9.2E-18 3.1E-22 114.8 10.6 80 80-165 11-92 (99)
146 2dnl_A Cytoplasmic polyadenyla 99.7 3.3E-18 1.1E-22 120.2 8.5 81 81-162 5-88 (114)
147 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-18 1.6E-22 118.5 8.8 78 82-163 26-106 (111)
148 1fjc_A Nucleolin RBD2, protein 99.7 6E-18 2.1E-22 115.0 8.8 81 80-165 12-94 (96)
149 2lmi_A GRSF-1, G-rich sequence 99.7 1.3E-18 4.4E-23 120.9 5.5 83 80-163 7-93 (107)
150 2e5g_A U6 snRNA-specific termi 99.7 2.3E-17 7.9E-22 111.7 11.3 80 81-166 5-86 (94)
151 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-17 3.9E-22 113.9 9.7 79 81-164 16-96 (97)
152 2dnp_A RNA-binding protein 14; 99.7 2.1E-17 7.3E-22 111.0 10.9 77 81-165 6-84 (90)
153 1wf1_A RNA-binding protein RAL 99.7 2.4E-17 8.3E-22 114.9 11.2 77 81-165 24-103 (110)
154 2krb_A Eukaryotic translation 99.7 3.9E-18 1.3E-22 112.4 6.7 70 85-156 2-80 (81)
155 2ytc_A PRE-mRNA-splicing facto 99.7 2.9E-17 9.9E-22 109.0 10.9 75 80-160 8-85 (85)
156 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5.1E-22 129.3 10.8 83 81-163 12-96 (213)
157 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-17 3.7E-22 116.3 9.0 78 80-165 27-106 (108)
158 2dha_A FLJ20171 protein; RRM d 99.7 2.1E-18 7.3E-23 122.5 5.3 80 82-162 21-105 (123)
159 3beg_B Splicing factor, argini 99.7 8.9E-18 3E-22 118.1 8.5 75 81-162 13-94 (115)
160 1nu4_A U1A RNA binding domain; 99.7 7.6E-18 2.6E-22 114.7 7.8 81 81-164 5-91 (97)
161 1x5p_A Negative elongation fac 99.7 1.5E-16 5E-21 108.4 13.5 80 80-167 11-92 (97)
162 2la4_A Nuclear and cytoplasmic 99.7 1.1E-17 3.7E-22 114.8 7.6 76 81-162 24-101 (101)
163 2e44_A Insulin-like growth fac 99.7 2.7E-17 9.1E-22 111.8 9.3 80 81-164 12-94 (96)
164 2f3j_A RNA and export factor b 99.7 2.4E-17 8.1E-22 124.5 9.9 83 80-163 84-168 (177)
165 2cqh_A IGF-II mRNA-binding pro 99.7 1.9E-17 6.5E-22 111.9 8.4 79 81-166 5-87 (93)
166 2kvi_A Nuclear polyadenylated 99.7 1.2E-17 4E-22 113.7 7.2 77 81-165 7-86 (96)
167 2xnq_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 110.6 10.6 75 80-162 18-95 (97)
168 3lqv_A PRE-mRNA branch site pr 99.7 3.4E-17 1.2E-21 115.0 9.8 81 81-164 5-87 (115)
169 2cjk_A Nuclear polyadenylated 99.7 1.9E-17 6.4E-22 123.3 8.9 81 83-163 2-82 (167)
170 1l3k_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 123.6 11.0 85 80-164 9-94 (196)
171 1fxl_A Paraneoplastic encephal 99.7 8.2E-17 2.8E-21 119.6 10.9 81 84-164 2-84 (167)
172 2cq2_A Hypothetical protein LO 99.7 7.9E-17 2.7E-21 112.3 9.9 81 81-167 22-111 (114)
173 1b7f_A Protein (SXL-lethal pro 99.7 6.5E-17 2.2E-21 120.4 10.1 83 83-165 2-86 (168)
174 1whx_A Hypothetical protein ri 99.7 5E-17 1.7E-21 113.5 8.7 76 82-163 8-85 (111)
175 2j8a_A Histone-lysine N-methyl 99.7 3.8E-17 1.3E-21 114.8 7.1 76 85-160 3-94 (136)
176 3egn_A RNA-binding protein 40; 99.7 1.1E-17 3.7E-22 122.1 3.9 85 81-165 42-133 (143)
177 1sjr_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 116.9 10.3 78 82-163 44-125 (164)
178 1wg1_A KIAA1579 protein, homol 99.7 1.6E-16 5.4E-21 106.3 7.5 73 83-162 4-78 (88)
179 2diu_A KIAA0430 protein; struc 99.7 4.2E-16 1.4E-20 103.7 9.2 73 83-165 7-87 (96)
180 3zzy_A Polypyrimidine tract-bi 99.7 4E-16 1.4E-20 111.1 9.5 77 82-163 26-107 (130)
181 2voo_A Lupus LA protein; RNA-b 99.7 6.4E-16 2.2E-20 118.2 10.8 79 83-162 108-187 (193)
182 2qfj_A FBP-interacting repress 99.6 5.7E-16 2E-20 119.9 9.9 82 82-163 26-109 (216)
183 2e5i_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 105.8 12.5 74 84-163 25-103 (124)
184 3md3_A Nuclear and cytoplasmic 99.6 9.9E-16 3.4E-20 113.6 10.2 79 85-164 1-81 (166)
185 2hzc_A Splicing factor U2AF 65 99.6 1E-15 3.6E-20 101.8 9.0 70 82-158 4-86 (87)
186 3tyt_A Heterogeneous nuclear r 99.6 1.1E-15 3.9E-20 118.0 10.2 76 83-163 3-81 (205)
187 2bz2_A Negative elongation fac 99.6 1.2E-15 4E-20 108.1 8.4 77 81-165 36-114 (121)
188 2pe8_A Splicing factor 45; RRM 99.6 3.3E-15 1.1E-19 103.1 9.8 81 81-161 5-93 (105)
189 3nmr_A Cugbp ELAV-like family 99.6 1.8E-15 6.3E-20 113.1 8.7 81 84-164 3-90 (175)
190 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.9E-14 6.3E-19 98.3 12.8 79 84-167 10-95 (100)
191 3pgw_A U1-A; protein-RNA compl 99.6 6.4E-15 2.2E-19 118.8 11.0 81 80-163 5-91 (282)
192 3u1l_A PRE-mRNA-splicing facto 99.6 3.8E-15 1.3E-19 116.9 8.1 78 81-164 131-231 (240)
193 2adc_A Polypyrimidine tract-bi 99.6 1.1E-14 3.6E-19 114.3 10.3 79 80-163 30-111 (229)
194 2dit_A HIV TAT specific factor 99.6 4.8E-14 1.6E-18 98.4 11.6 82 81-166 12-106 (112)
195 1fje_B Nucleolin RBD12, protei 99.5 2.5E-15 8.5E-20 112.7 4.2 85 80-165 9-94 (175)
196 1qm9_A Polypyrimidine tract-bi 99.5 2.1E-14 7E-19 109.9 7.9 76 84-164 3-81 (198)
197 3sde_A Paraspeckle component 1 99.5 9E-14 3.1E-18 111.1 10.0 76 80-161 18-95 (261)
198 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.4E-18 95.1 8.5 79 83-161 4-96 (105)
199 2g4b_A Splicing factor U2AF 65 99.5 2.5E-13 8.4E-18 101.3 10.2 76 83-164 3-90 (172)
200 2yh0_A Splicing factor U2AF 65 99.5 3.7E-13 1.2E-17 102.6 10.5 75 83-164 3-90 (198)
201 1jmt_A Splicing factor U2AF 35 99.4 3.2E-14 1.1E-18 98.0 3.5 70 89-159 20-103 (104)
202 3ue2_A Poly(U)-binding-splicin 99.4 4E-13 1.4E-17 94.4 7.5 79 83-161 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 1.7E-12 5.8E-17 107.0 9.7 75 80-160 14-97 (345)
204 4f25_A Polyadenylate-binding p 99.4 2.5E-14 8.4E-19 100.4 -1.2 76 2-100 38-113 (115)
205 3s6e_A RNA-binding protein 39; 99.2 3.7E-11 1.2E-15 83.8 8.6 75 82-160 5-91 (114)
206 1owx_A Lupus LA protein, SS-B, 99.2 8.6E-11 2.9E-15 82.3 10.0 75 80-160 14-94 (121)
207 2lxi_A RNA-binding protein 10; 99.2 3E-12 1E-16 85.9 1.5 49 1-49 34-83 (91)
208 3s8s_A Histone-lysine N-methyl 99.2 4.7E-12 1.6E-16 87.9 1.6 53 1-53 38-90 (110)
209 2lkz_A RNA-binding protein 5; 99.2 2.7E-12 9.2E-17 86.7 0.0 47 1-47 43-93 (95)
210 4fxv_A ELAV-like protein 1; RN 99.2 2.9E-12 9.9E-17 87.3 -0.0 47 1-47 51-97 (99)
211 3p5t_L Cleavage and polyadenyl 99.1 5.8E-12 2E-16 84.2 0.3 48 1-48 35-82 (90)
212 2dnr_A Synaptojanin-1; RRM dom 99.1 3.7E-10 1.3E-14 74.4 8.3 73 82-162 5-86 (91)
213 3ns6_A Eukaryotic translation 99.1 7.9E-12 2.7E-16 85.2 0.2 48 1-48 44-92 (100)
214 2mss_A Protein (musashi1); RNA 99.0 1.5E-10 5.1E-15 74.3 4.2 45 1-46 31-75 (75)
215 1x5t_A Splicing factor 3B subu 99.0 6.8E-11 2.3E-15 79.7 2.3 48 1-48 38-85 (96)
216 2lmi_A GRSF-1, G-rich sequence 99.0 2.8E-10 9.7E-15 78.4 5.3 51 1-53 46-96 (107)
217 1x5u_A Splicing factor 3B subu 99.0 1.4E-10 4.7E-15 79.6 2.7 48 1-48 47-94 (105)
218 2x1f_A MRNA 3'-END-processing 99.0 1.2E-10 4E-15 78.6 2.2 54 1-54 34-87 (96)
219 3md1_A Nuclear and cytoplasmic 99.0 4.3E-11 1.5E-15 78.4 -0.0 49 1-49 33-81 (83)
220 2dnz_A Probable RNA-binding pr 99.0 9.1E-11 3.1E-15 78.9 1.6 47 1-47 37-83 (95)
221 3bs9_A Nucleolysin TIA-1 isofo 99.0 3.8E-11 1.3E-15 79.4 -0.5 48 1-48 38-85 (87)
222 2dgs_A DAZ-associated protein 99.0 1.6E-10 5.6E-15 78.3 2.7 47 1-48 42-88 (99)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.0 2.9E-10 9.9E-15 77.3 3.9 47 1-48 50-97 (100)
224 2dis_A Unnamed protein product 99.0 4.5E-10 1.5E-14 77.5 4.9 47 3-49 44-92 (109)
225 1whw_A Hypothetical protein ri 99.0 1.2E-10 4.2E-15 78.9 1.9 49 1-49 40-88 (99)
226 2la6_A RNA-binding protein FUS 99.0 8.1E-11 2.8E-15 79.9 0.8 46 1-46 53-98 (99)
227 2cpe_A RNA-binding protein EWS 99.0 1.3E-10 4.3E-15 80.9 1.8 48 1-48 55-102 (113)
228 2ki2_A SS-DNA binding protein 99.0 2.4E-10 8.3E-15 76.0 3.2 47 1-48 33-79 (90)
229 2m2b_A RNA-binding protein 10; 99.0 1.2E-10 4.2E-15 83.2 1.8 47 1-48 57-107 (131)
230 2div_A TRNA selenocysteine ass 99.0 1.4E-10 4.9E-15 78.6 2.0 47 1-47 42-92 (99)
231 2fc8_A NCL protein; structure 99.0 5.4E-11 1.9E-15 81.1 -0.2 48 1-48 44-91 (102)
232 2dng_A Eukaryotic translation 99.0 1.3E-10 4.5E-15 79.4 1.7 47 1-48 46-92 (103)
233 2dnm_A SRP46 splicing factor; 99.0 1.1E-10 3.9E-15 79.7 1.3 47 1-47 45-91 (103)
234 2dgp_A Bruno-like 4, RNA bindi 99.0 2.4E-10 8.2E-15 78.4 2.6 48 1-48 45-95 (106)
235 1x5s_A Cold-inducible RNA-bind 99.0 1.3E-10 4.4E-15 79.3 1.2 47 1-47 44-90 (102)
236 3n9u_C Cleavage and polyadenyl 99.0 8.2E-11 2.8E-15 86.7 0.2 51 1-51 89-139 (156)
237 1fj7_A Nucleolin RBD1, protein 98.9 1.1E-10 3.9E-15 79.4 0.9 47 1-48 48-94 (101)
238 2hvz_A Splicing factor, argini 98.9 4.4E-11 1.5E-15 81.5 -1.3 40 10-49 36-75 (101)
239 2dhg_A TRNA selenocysteine ass 98.9 2.9E-10 1E-14 77.7 2.9 47 1-48 42-89 (104)
240 1p1t_A Cleavage stimulation fa 98.9 1.5E-10 5.2E-15 79.1 1.4 55 1-55 40-94 (104)
241 2cq0_A Eukaryotic translation 98.9 1.2E-10 3.9E-15 79.7 0.7 48 1-48 47-94 (103)
242 1p27_B RNA-binding protein 8A; 98.9 1.2E-10 4.1E-15 80.0 0.6 48 1-48 55-102 (106)
243 2kxn_B Transformer-2 protein h 98.9 2.4E-10 8.2E-15 81.5 2.1 48 1-48 78-125 (129)
244 2cqb_A Peptidyl-prolyl CIS-tra 98.9 1E-10 3.6E-15 79.7 -0.0 48 1-48 44-91 (102)
245 1wi8_A EIF-4B, eukaryotic tran 98.9 2.8E-10 9.7E-15 77.9 2.2 47 1-48 46-93 (104)
246 3mdf_A Peptidyl-prolyl CIS-tra 98.9 1.1E-10 3.8E-15 76.8 0.0 46 1-46 39-84 (85)
247 2krb_A Eukaryotic translation 98.9 1E-09 3.6E-14 71.5 4.7 39 5-43 41-80 (81)
248 2jrs_A RNA-binding protein 39; 98.9 1.5E-10 5E-15 80.0 0.5 49 1-49 58-106 (108)
249 2dgo_A Cytotoxic granule-assoc 98.9 2E-10 6.9E-15 80.0 1.1 49 1-49 47-95 (115)
250 2lea_A Serine/arginine-rich sp 98.9 4.5E-10 1.5E-14 80.7 2.9 48 1-48 79-126 (135)
251 2e5h_A Zinc finger CCHC-type a 98.9 1.5E-10 5E-15 77.7 0.3 46 1-46 48-93 (94)
252 1x4h_A RNA-binding protein 28; 98.9 2.6E-10 8.9E-15 78.9 1.6 48 1-48 47-100 (111)
253 3q2s_C Cleavage and polyadenyl 98.9 3.4E-10 1.2E-14 88.6 2.4 51 1-51 102-152 (229)
254 2cpz_A CUG triplet repeat RNA- 98.9 1.4E-10 4.9E-15 80.8 0.1 48 1-48 57-104 (115)
255 1oo0_B CG8781-PA, drosophila Y 98.9 2.2E-10 7.6E-15 79.2 1.1 48 1-48 58-105 (110)
256 1wez_A HnRNP H', FTP-3, hetero 98.9 3E-10 1E-14 77.7 1.7 44 1-46 46-89 (102)
257 2cph_A RNA binding motif prote 98.9 4.5E-10 1.6E-14 77.1 2.6 48 1-48 47-96 (107)
258 1wel_A RNA-binding protein 12; 98.9 2.5E-10 8.6E-15 80.8 1.3 52 2-54 58-109 (124)
259 1iqt_A AUF1, heterogeneous nuc 98.9 7.6E-10 2.6E-14 70.9 3.4 44 1-45 31-74 (75)
260 2cqp_A RNA-binding protein 12; 98.9 1.5E-10 5.2E-15 78.3 0.0 46 2-47 48-93 (98)
261 1uaw_A Mouse-musashi-1; RNP-ty 98.9 2.6E-10 9E-15 73.5 1.1 45 1-46 32-76 (77)
262 3ex7_B RNA-binding protein 8A; 98.9 3.4E-10 1.2E-14 80.2 1.7 49 1-49 54-102 (126)
263 2lcw_A RNA-binding protein FUS 98.4 1.7E-10 5.7E-15 80.6 0.0 49 1-49 47-95 (116)
264 1wg5_A Heterogeneous nuclear r 98.9 9.7E-10 3.3E-14 75.3 3.7 45 1-47 48-92 (104)
265 2cqd_A RNA-binding region cont 98.9 6E-10 2.1E-14 77.8 2.8 46 1-47 49-94 (116)
266 3ucg_A Polyadenylate-binding p 98.9 3.8E-10 1.3E-14 74.8 1.3 46 1-47 38-83 (89)
267 1x4e_A RNA binding motif, sing 98.9 2.7E-10 9.2E-15 75.0 0.4 46 1-46 37-82 (85)
268 2fy1_A RNA-binding motif prote 98.9 4.7E-10 1.6E-14 78.5 1.6 48 1-49 39-86 (116)
269 2cqc_A Arginine/serine-rich sp 98.9 1.8E-10 6E-15 77.4 -0.5 47 1-47 47-93 (95)
270 2khc_A Testis-specific RNP-typ 98.9 3.7E-10 1.3E-14 79.1 1.1 46 1-46 72-117 (118)
271 2ek1_A RNA-binding protein 12; 98.9 1.9E-10 6.6E-15 77.3 -0.4 45 2-46 48-92 (95)
272 2db1_A Heterogeneous nuclear r 98.9 4.3E-10 1.5E-14 78.9 1.4 50 1-52 52-101 (118)
273 1ufw_A Synaptojanin 2; RNP dom 98.9 2.9E-09 9.8E-14 70.5 5.1 73 81-161 12-94 (95)
274 2dha_A FLJ20171 protein; RRM d 98.9 5.3E-10 1.8E-14 79.0 1.6 55 1-57 59-113 (123)
275 2cpy_A RNA-binding protein 12; 98.9 5.8E-10 2E-14 77.7 1.6 51 1-53 48-98 (114)
276 2pe8_A Splicing factor 45; RRM 98.9 2.4E-10 8.2E-15 78.5 -0.4 48 1-48 45-93 (105)
277 2hgm_A HNRPF protein, heteroge 98.8 1.3E-09 4.4E-14 77.3 3.4 45 1-47 75-119 (126)
278 2kn4_A Immunoglobulin G-bindin 98.8 5.6E-10 1.9E-14 82.2 1.4 47 1-47 102-148 (158)
279 2dgw_A Probable RNA-binding pr 98.8 2.8E-10 9.6E-15 75.9 -0.3 46 1-48 41-86 (91)
280 2hgl_A HNRPF protein, heteroge 98.8 4E-10 1.4E-14 81.0 0.5 48 1-50 79-126 (136)
281 2hgn_A Heterogeneous nuclear r 98.8 1.7E-09 5.7E-14 78.0 3.6 46 1-48 77-122 (139)
282 2do4_A Squamous cell carcinoma 98.8 3E-10 1E-14 77.1 -0.4 47 1-48 49-95 (100)
283 1s79_A Lupus LA protein; RRM, 98.8 1.1E-09 3.6E-14 75.0 2.3 44 1-46 43-86 (103)
284 2dnh_A Bruno-like 5, RNA bindi 98.8 5.7E-10 2E-14 76.4 0.9 47 1-48 47-96 (105)
285 3lqv_A PRE-mRNA branch site pr 98.8 4.8E-10 1.6E-14 78.1 0.4 67 7-110 43-109 (115)
286 1jmt_A Splicing factor U2AF 35 98.8 6.2E-10 2.1E-14 76.3 0.9 45 1-46 59-103 (104)
287 2dh8_A DAZ-associated protein 98.8 5.3E-10 1.8E-14 76.6 0.5 48 1-49 48-95 (105)
288 1u6f_A Tcubp1, RNA-binding pro 98.8 3.5E-10 1.2E-14 81.5 -0.5 48 1-48 74-121 (139)
289 2dnn_A RNA-binding protein 12; 98.8 6E-10 2E-14 77.0 0.6 47 1-49 47-93 (109)
290 2fc9_A NCL protein; structure 98.8 6.8E-10 2.3E-14 75.5 0.9 47 1-48 44-90 (101)
291 2rs2_A Musashi-1, RNA-binding 98.8 7.7E-10 2.6E-14 76.5 0.9 47 1-48 57-103 (109)
292 2cpf_A RNA binding motif prote 98.8 3.7E-10 1.3E-14 76.3 -0.7 47 2-48 38-87 (98)
293 1x4b_A Heterogeneous nuclear r 98.8 1.1E-09 3.9E-14 76.3 1.6 47 1-48 59-105 (116)
294 3dxb_A Thioredoxin N-terminall 98.8 1.4E-08 4.6E-13 78.9 7.7 65 96-160 141-211 (222)
295 1h2v_Z 20 kDa nuclear CAP bind 98.8 7.9E-10 2.7E-14 81.3 0.4 48 1-48 71-118 (156)
296 2cq4_A RNA binding motif prote 98.8 3.6E-10 1.2E-14 78.7 -1.5 46 1-47 57-102 (114)
297 2cpi_A CCR4-NOT transcription 98.8 7.3E-10 2.5E-14 76.8 0.1 50 1-50 50-102 (111)
298 2a3j_A U1 small nuclear ribonu 98.8 2E-09 7E-14 76.4 2.4 46 6-51 67-112 (127)
299 3v4m_A Splicing factor U2AF 65 98.8 9.4E-10 3.2E-14 75.5 0.6 49 1-49 47-97 (105)
300 2d9p_A Polyadenylate-binding p 98.8 1.1E-09 3.8E-14 74.7 0.8 45 2-48 48-92 (103)
301 2wbr_A GW182, gawky, LD47780P; 98.8 7.2E-10 2.5E-14 72.9 -0.4 40 8-47 40-79 (89)
302 2jwn_A Embryonic polyadenylate 98.8 1.6E-09 5.5E-14 76.4 1.4 46 1-47 68-113 (124)
303 3ulh_A THO complex subunit 4; 98.8 6.5E-10 2.2E-14 76.4 -0.7 45 1-46 61-105 (107)
304 2ywk_A Putative RNA-binding pr 98.7 1.1E-09 3.9E-14 73.4 -0.1 46 1-47 48-93 (95)
305 2cpx_A Hypothetical protein FL 98.7 1.7E-09 5.9E-14 75.2 0.7 45 4-48 60-104 (115)
306 3s7r_A Heterogeneous nuclear r 98.7 1.3E-09 4.3E-14 72.0 -0.0 44 1-45 43-86 (87)
307 1x5o_A RNA binding motif, sing 98.7 1.7E-09 5.9E-14 75.1 0.6 39 1-40 57-95 (114)
308 1rk8_A CG8781-PA, CG8781-PA pr 98.7 1.2E-09 4E-14 81.2 -0.4 50 1-50 104-153 (165)
309 4a8x_A RNA-binding protein wit 98.7 8.1E-10 2.8E-14 73.0 -1.2 47 1-47 36-83 (88)
310 2nlw_A Eukaryotic translation 98.7 2E-09 6.7E-14 73.8 0.7 43 5-47 55-98 (105)
311 2kt5_A RNA and export factor-b 98.7 1.4E-09 4.8E-14 76.8 -0.3 46 1-47 67-112 (124)
312 2dgx_A KIAA0430 protein; RRM d 98.7 1.5E-09 5.2E-14 73.1 -0.4 44 1-47 45-88 (96)
313 2do0_A HnRNP M, heterogeneous 98.7 2.3E-09 7.8E-14 74.5 -0.0 46 1-47 47-92 (114)
314 2cqg_A TDP-43, TAR DNA-binding 98.7 2.5E-09 8.6E-14 72.9 -0.0 46 1-48 47-92 (103)
315 2dgv_A HnRNP M, heterogeneous 98.7 7.8E-09 2.7E-13 68.8 2.3 42 6-47 43-84 (92)
316 2j8a_A Histone-lysine N-methyl 98.6 3.2E-09 1.1E-13 74.6 -1.2 46 1-46 38-93 (136)
317 2cqi_A Nucleolysin TIAR; RNA r 98.6 4.7E-09 1.6E-13 71.5 -0.5 45 2-48 48-92 (103)
318 2cq3_A RNA-binding protein 9; 98.6 7E-09 2.4E-13 70.6 0.2 45 2-48 48-92 (103)
319 1fjc_A Nucleolin RBD2, protein 98.6 5.6E-09 1.9E-13 70.2 -0.4 44 5-48 47-90 (96)
320 3ue2_A Poly(U)-binding-splicin 98.6 2.2E-09 7.4E-14 75.2 -2.6 42 7-48 67-108 (118)
321 3pgw_S U1-70K; protein-RNA com 98.6 1.4E-08 4.9E-13 86.6 1.6 51 1-51 134-184 (437)
322 2diu_A KIAA0430 protein; struc 98.5 1.8E-08 6.3E-13 66.9 1.6 40 12-51 47-86 (96)
323 2e5j_A Methenyltetrahydrofolat 98.5 1.2E-08 3.9E-13 68.8 0.6 42 7-48 52-93 (97)
324 3egn_A RNA-binding protein 40; 98.5 4.1E-09 1.4E-13 76.3 -1.7 45 5-49 86-130 (143)
325 2xs2_A Deleted in azoospermia- 98.5 8.9E-09 3.1E-13 70.0 -0.1 44 1-47 41-84 (102)
326 1x4a_A Splicing factor, argini 98.5 1.4E-08 4.9E-13 69.8 0.9 43 6-48 56-98 (109)
327 2err_A Ataxin-2-binding protei 98.5 9.6E-09 3.3E-13 70.9 -0.3 45 2-48 62-106 (109)
328 1nu4_A U1A RNA binding domain; 98.5 6.9E-09 2.3E-13 69.8 -1.5 44 7-50 47-90 (97)
329 2jvr_A Nucleolar protein 3; RN 98.5 1.5E-08 5.2E-13 70.1 0.2 40 8-47 64-103 (111)
330 3s6e_A RNA-binding protein 39; 98.5 2.3E-08 8E-13 69.5 0.6 49 10-58 54-102 (114)
331 2dit_A HIV TAT specific factor 98.5 2E-08 6.9E-13 69.6 0.1 40 9-48 62-101 (112)
332 1sjq_A Polypyrimidine tract-bi 98.5 3.5E-08 1.2E-12 67.4 1.1 39 11-49 52-92 (105)
333 2la4_A Nuclear and cytoplasmic 98.4 4.7E-08 1.6E-12 66.2 1.5 40 9-48 61-100 (101)
334 2l9w_A U4/U6 snRNA-associated- 98.4 1.4E-06 4.6E-11 58.9 8.3 72 81-158 18-96 (117)
335 1x5p_A Negative elongation fac 98.4 4E-08 1.4E-12 66.1 0.6 41 8-48 46-86 (97)
336 2dnl_A Cytoplasmic polyadenyla 98.4 5.8E-08 2E-12 67.4 1.3 31 1-31 39-72 (114)
337 2e5g_A U6 snRNA-specific termi 98.4 1.4E-07 4.8E-12 63.0 3.0 42 2-47 39-80 (94)
338 2bz2_A Negative elongation fac 98.4 6.9E-08 2.4E-12 67.8 1.2 42 8-49 70-111 (121)
339 2cpj_A Non-POU domain-containi 98.4 6.5E-08 2.2E-12 65.3 0.9 40 9-48 49-88 (99)
340 3r27_A HnRNP L, heterogeneous 98.4 2.8E-08 9.6E-13 67.3 -0.9 41 9-49 55-97 (100)
341 2dhx_A Poly (ADP-ribose) polym 98.4 1.1E-05 3.8E-10 54.0 11.6 76 82-165 6-87 (104)
342 2f3j_A RNA and export factor b 98.4 1E-07 3.6E-12 71.4 1.8 43 6-48 124-166 (177)
343 1wg1_A KIAA1579 protein, homol 98.4 2.9E-08 9.9E-13 65.6 -1.1 39 9-47 38-76 (88)
344 2d9o_A DNAJ (HSP40) homolog, s 98.4 1.4E-07 4.7E-12 64.0 2.2 39 8-48 51-89 (100)
345 1x4f_A Matrin 3; structural ge 98.3 4.4E-08 1.5E-12 67.8 -0.6 40 9-48 60-101 (112)
346 2cqh_A IGF-II mRNA-binding pro 98.3 4.6E-08 1.6E-12 65.2 -0.5 40 9-48 42-82 (93)
347 2dnq_A RNA-binding protein 4B; 98.3 1.3E-07 4.4E-12 62.6 1.6 38 11-48 42-79 (90)
348 2ytc_A PRE-mRNA-splicing facto 98.3 1.8E-07 6.1E-12 61.1 2.0 37 10-46 47-84 (85)
349 2kvi_A Nuclear polyadenylated 98.3 1.2E-07 4E-12 63.7 1.0 39 10-48 44-82 (96)
350 2cq2_A Hypothetical protein LO 98.3 9.3E-08 3.2E-12 66.3 0.3 38 10-47 62-104 (114)
351 1whx_A Hypothetical protein ri 98.3 1.1E-07 3.6E-12 65.8 0.5 41 9-49 44-84 (111)
352 1why_A Hypothetical protein ri 98.3 1.4E-07 4.7E-12 63.4 0.9 38 11-48 53-92 (97)
353 1sjr_A Polypyrimidine tract-bi 98.3 1.8E-07 6.1E-12 68.9 1.4 42 8-49 81-124 (164)
354 2xnq_A Nuclear polyadenylated 98.3 1.2E-07 4E-12 63.9 0.4 39 10-48 56-94 (97)
355 1x4g_A Nucleolysin TIAR; struc 98.3 1.1E-07 3.8E-12 65.3 0.1 38 11-48 61-98 (109)
356 1wex_A Hypothetical protein (r 98.3 1.2E-07 4E-12 64.8 0.2 39 10-48 50-90 (104)
357 1x4d_A Matrin 3; structural ge 98.3 6.1E-08 2.1E-12 66.0 -1.4 39 10-48 51-91 (102)
358 2cq1_A PTB-like protein L; RRM 98.2 1.1E-07 3.9E-12 64.5 -0.2 39 11-49 51-91 (101)
359 2cpd_A Apobec-1 stimulating pr 98.2 1.2E-07 3.9E-12 64.0 -0.2 40 9-48 49-88 (99)
360 1x4c_A Splicing factor, argini 98.2 1.2E-07 4E-12 65.2 -0.6 37 12-48 51-92 (108)
361 2e44_A Insulin-like growth fac 98.2 2.2E-07 7.5E-12 62.2 0.7 45 1-49 48-92 (96)
362 1wf1_A RNA-binding protein RAL 98.2 1.7E-07 5.8E-12 64.5 0.1 38 10-47 61-98 (110)
363 3beg_B Splicing factor, argini 98.2 4.5E-07 1.5E-11 63.0 2.3 35 12-46 52-86 (115)
364 2hzc_A Splicing factor U2AF 65 98.2 4E-07 1.4E-11 59.7 1.9 35 8-43 50-84 (87)
365 2jvo_A Nucleolar protein 3; nu 98.2 2.1E-07 7.3E-12 63.9 0.4 38 11-48 65-102 (108)
366 2i2y_A Fusion protein consists 98.2 3.4E-07 1.2E-11 66.6 1.4 39 10-48 109-147 (150)
367 2ad9_A Polypyrimidine tract-bi 98.2 3.2E-07 1.1E-11 64.1 0.5 40 10-49 66-107 (119)
368 2dgu_A Heterogeneous nuclear r 98.2 1.9E-07 6.4E-12 63.5 -0.7 41 10-50 44-84 (103)
369 2dnp_A RNA-binding protein 14; 98.1 4.1E-07 1.4E-11 60.1 -0.1 37 11-47 43-79 (90)
370 2dgt_A RNA-binding protein 30; 98.1 3.6E-07 1.2E-11 60.7 -0.4 37 11-47 44-80 (92)
371 3u1l_A PRE-mRNA-splicing facto 98.1 8.9E-07 3.1E-11 69.3 1.3 41 9-49 177-229 (240)
372 3zzy_A Polypyrimidine tract-bi 98.1 4.2E-07 1.4E-11 64.4 -0.5 40 10-49 64-106 (130)
373 2e5i_A Heterogeneous nuclear r 98.0 1.2E-06 3.9E-11 61.7 1.0 38 12-49 62-102 (124)
374 3d2w_A TAR DNA-binding protein 97.9 3.7E-06 1.3E-10 55.5 1.6 36 10-47 47-82 (89)
375 1wf0_A TDP-43, TAR DNA-binding 97.8 4.9E-06 1.7E-10 54.6 0.8 36 10-47 41-76 (88)
376 2dnr_A Synaptojanin-1; RRM dom 97.7 1.1E-05 3.6E-10 53.1 1.5 33 14-47 52-84 (91)
377 1whv_A Poly(A)-specific ribonu 97.6 0.00028 9.4E-09 46.7 7.6 54 83-145 15-68 (100)
378 1wey_A Calcipressin 1; structu 97.5 0.00045 1.5E-08 46.3 7.8 74 84-163 5-85 (104)
379 3tht_A Alkylated DNA repair pr 97.5 1.7E-05 5.8E-10 65.3 0.9 38 10-47 55-97 (345)
380 3ctr_A Poly(A)-specific ribonu 97.3 0.00028 9.7E-09 46.8 4.6 52 85-145 7-58 (101)
381 1ufw_A Synaptojanin 2; RNP dom 97.1 3.8E-05 1.3E-09 50.7 -1.4 31 14-45 61-91 (95)
382 1wwh_A Nucleoporin 35, nucleop 97.0 0.0069 2.4E-07 41.7 9.1 73 81-160 21-95 (119)
383 1uw4_A UPF3X; nonsense mediate 96.9 0.0076 2.6E-07 39.5 8.5 60 85-144 2-63 (91)
384 3pq1_A Poly(A) RNA polymerase; 96.0 0.0032 1.1E-07 53.7 3.0 56 84-145 53-108 (464)
385 3p3d_A Nucleoporin 53; structu 96.0 0.01 3.4E-07 41.5 4.9 77 83-160 6-97 (132)
386 2l08_A Regulator of nonsense t 95.8 0.035 1.2E-06 36.7 6.5 64 82-145 7-72 (97)
387 1owx_A Lupus LA protein, SS-B, 92.7 0.044 1.5E-06 37.9 1.7 31 13-43 57-90 (121)
388 3d45_A Poly(A)-specific ribonu 91.8 0.51 1.8E-05 40.7 7.6 55 83-146 439-493 (507)
389 2dhx_A Poly (ADP-ribose) polym 90.8 0.19 6.6E-06 33.5 3.0 31 12-43 48-78 (104)
390 2l9w_A U4/U6 snRNA-associated- 85.0 0.11 3.6E-06 35.2 -1.1 32 13-44 64-95 (117)
391 1wey_A Calcipressin 1; structu 73.4 0.74 2.5E-05 30.7 0.1 34 14-47 49-82 (104)
392 1wwh_A Nucleoporin 35, nucleop 53.4 7.4 0.00025 26.5 2.1 27 11-38 59-85 (119)
393 4e8u_A Putative uncharacterize 52.6 28 0.00096 25.2 5.2 49 85-136 13-72 (172)
394 3p3d_A Nucleoporin 53; structu 51.8 9.1 0.00031 26.5 2.4 33 11-44 62-94 (132)
395 3lpe_A Putative transcription 48.0 37 0.0013 21.6 4.8 23 10-32 49-71 (92)
396 2g0c_A ATP-dependent RNA helic 46.7 45 0.0015 20.0 5.4 66 86-160 2-75 (76)
397 2pk2_A Cyclin-T1, protein TAT; 44.0 5 0.00017 32.9 0.1 9 96-104 229-237 (358)
398 4fdd_B RNA-binding protein FUS 36.8 32 0.0011 16.8 2.3 9 212-220 21-29 (29)
399 3ts2_A Protein LIN-28 homolog 34.0 8.4 0.00029 27.2 -0.0 28 99-134 2-29 (148)
400 3fut_A Dimethyladenosine trans 29.5 52 0.0018 25.5 3.9 32 84-116 110-141 (271)
401 4eyt_A Telomerase associated p 28.5 1.2E+02 0.004 19.4 8.7 72 82-161 10-90 (129)
402 2k5n_A Putative cold-shock pro 27.6 24 0.00081 21.6 1.2 12 9-20 12-23 (74)
403 3cam_A Cold-shock domain famil 26.6 26 0.00088 20.9 1.2 12 9-20 11-22 (67)
404 2kcm_A Cold shock domain famil 26.0 26 0.0009 21.4 1.2 12 9-20 10-21 (74)
405 3h7h_B Transcription elongatio 25.9 47 0.0016 21.9 2.6 27 9-35 49-75 (106)
406 1c9o_A CSPB, cold-shock protei 25.9 27 0.00091 20.7 1.2 11 10-20 12-22 (66)
407 2v94_A RPS24, 30S ribosomal pr 25.3 1.5E+02 0.005 19.6 4.9 48 94-142 37-89 (107)
408 3uzu_A Ribosomal RNA small sub 25.1 28 0.00096 27.2 1.6 34 85-118 115-148 (279)
409 1xn9_A 30S ribosomal protein S 25.0 1.2E+02 0.0041 19.8 4.4 48 94-142 28-80 (101)
410 3a0j_A Cold shock protein; OB- 24.8 29 0.00098 21.1 1.2 12 9-20 11-22 (73)
411 1g6p_A Cold shock protein TMCS 24.2 30 0.001 20.5 1.2 12 9-20 10-21 (66)
412 1h95_A CSD, Y-box binding prot 24.2 30 0.001 21.4 1.2 11 10-20 19-29 (79)
413 1ywx_A 30S ribosomal protein S 24.0 1.5E+02 0.005 19.4 4.7 48 94-142 28-80 (102)
414 3ulj_A LIN28B, DNA-binding pro 24.0 32 0.0011 22.0 1.4 11 9-19 18-28 (90)
415 2i9x_A Putative septation prot 24.0 1E+02 0.0036 19.5 3.8 26 110-135 5-30 (87)
416 3i2z_B RNA chaperone, negative 22.3 34 0.0012 20.6 1.2 12 9-20 15-26 (71)
417 2e5p_A Protein PHF1, PHD finge 21.8 60 0.0021 19.4 2.2 11 126-136 37-47 (68)
418 1qyr_A KSGA, high level kasuga 21.0 79 0.0027 24.1 3.4 31 85-115 91-121 (252)
419 2ia9_A Putative septation prot 20.1 1.3E+02 0.0046 19.5 3.8 26 110-135 5-30 (100)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.3e-29 Score=193.16 Aligned_cols=143 Identities=27% Similarity=0.464 Sum_probs=114.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+++|||||+|.+.++|++||+. ++..+.++.|.+.++........ + ..
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~---------------~--------~~ 100 (196)
T 1l3k_A 45 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQR---------------P--------GA 100 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC--------------------------------
T ss_pred EEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccc---------------c--------cc
Confidence 467889999999999999999999999965 77778999998766543211100 0 02
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~a 159 (220)
.....+|||+|||+++++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||.. .+.|.|+.|.|.++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999964 45899999999999
Q ss_pred cCCCCCCC
Q 027706 160 TPLDDAGP 167 (220)
Q Consensus 160 ~~~~~~~~ 167 (220)
.++.+..+
T Consensus 181 ~~k~~~~~ 188 (196)
T 1l3k_A 181 LSKQEMAS 188 (196)
T ss_dssp C-------
T ss_pred CChhHhcc
Confidence 99877654
No 2
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=5.2e-29 Score=193.96 Aligned_cols=148 Identities=19% Similarity=0.334 Sum_probs=121.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++.............. ..
T Consensus 60 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~------------------~~ 121 (216)
T 2qfj_A 60 MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLA------------------EE 121 (216)
T ss_dssp ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHH------------------HH
T ss_pred EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhh------------------cc
Confidence 468899999999999999999999999998999999999999877654433222111000 01
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||.++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..++ .|.|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997544 89999999999
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
+.++....
T Consensus 202 a~~~~~~~ 209 (216)
T 2qfj_A 202 AVTPPMPL 209 (216)
T ss_dssp CSSCSSTT
T ss_pred ecCCCCCC
Confidence 98875443
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=4.5e-28 Score=181.34 Aligned_cols=132 Identities=27% Similarity=0.456 Sum_probs=114.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+++|||||+|.+.++|++||+. ...+.++.|.+.++.....
T Consensus 35 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~----------------------------- 83 (167)
T 2cjk_A 35 IMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE----------------------------- 83 (167)
T ss_dssp CCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHH-----------------------------
T ss_pred EEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhh-----------------------------
Confidence 578999999999999999999999999975 3468888888765532211
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~a 159 (220)
.....+|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++. ...+.|++|.|.+|
T Consensus 84 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEEC
T ss_pred ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeec
Confidence 12346899999999999999999999999999999999988999999999999999999999972 23899999999999
Q ss_pred cCCC
Q 027706 160 TPLD 163 (220)
Q Consensus 160 ~~~~ 163 (220)
.|++
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9863
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=2.6e-28 Score=190.29 Aligned_cols=136 Identities=20% Similarity=0.299 Sum_probs=115.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.|++++|||||+|.+.++|++||+.+++..+.++.|.+.++.......
T Consensus 47 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------------------------- 99 (213)
T 4f02_A 47 VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------------------------- 99 (213)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---------------------------
T ss_pred EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc---------------------------
Confidence 46899999999999999999999999999999999999988765543221111
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||+++++++|+++|++||.|..|.|+.|. +.++|||||+|.+.++|++||+.++ .|.|++|.|.+
T Consensus 100 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 1234689999999999999999999999999999999874 4479999999999999999997554 89999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
|.++.++
T Consensus 178 a~~~~~~ 184 (213)
T 4f02_A 178 FKSRKER 184 (213)
T ss_dssp CCCHHHH
T ss_pred cCCCccc
Confidence 9886543
No 5
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=8.7e-28 Score=184.58 Aligned_cols=151 Identities=15% Similarity=0.214 Sum_probs=119.4
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRI 83 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (220)
+..+++++|||||+|.++++|++|| .|++..+.++.|.|.++........... ......|.. ........
T Consensus 44 ~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~ 113 (198)
T 2yh0_A 44 AVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSE------NPSVYVPGV---VSTVVPDS 113 (198)
T ss_dssp EEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSS------CSSCCCTTS---SCCCSSCC
T ss_pred EeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcC------CCcCCCCCC---ccCCCCCC
Confidence 3456889999999999999999999 8999999999999877644322111000 000000110 11113456
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a~~ 161 (220)
..+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..+ ..|.|+.|.|.++.+
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 799999999999999999999999999999999999889999999999999999999999754 489999999999988
Q ss_pred CCC
Q 027706 162 LDD 164 (220)
Q Consensus 162 ~~~ 164 (220)
+..
T Consensus 194 ~~~ 196 (198)
T 2yh0_A 194 GAK 196 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=1.3e-27 Score=178.84 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=115.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+++|||||+|.++++|++|++.|++..+.++.|.+.++.... .
T Consensus 35 i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~-----------------------------~ 85 (168)
T 1b7f_A 35 IMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG-----------------------------E 85 (168)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS-----------------------------S
T ss_pred EEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc-----------------------------c
Confidence 56788899999999999999999999999999999999999876553211 2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC--eEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~i~v 156 (220)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..++ .+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3346899999999999999999999999999999999998899999999999999999999997554 7877 99999
Q ss_pred Eec
Q 027706 157 DSA 159 (220)
Q Consensus 157 ~~a 159 (220)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-27 Score=177.17 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=114.3
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 81 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
++|+. ++++|||||+|.+.++|++|++.+++..+.++.|.+.++..... ...
T Consensus 33 ~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~---------------------------~~~ 84 (166)
T 3md3_A 33 MIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ---------------------------SSS 84 (166)
T ss_dssp ECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC---------------------------CCC
T ss_pred EECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC---------------------------CCC
Confidence 45664 78999999999999999999999999999999998765532110 123
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a 159 (220)
....+|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..+ ..+.|++|.|.+|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999754 4899999999998
Q ss_pred cC
Q 027706 160 TP 161 (220)
Q Consensus 160 ~~ 161 (220)
++
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=2.3e-27 Score=177.11 Aligned_cols=130 Identities=20% Similarity=0.395 Sum_probs=113.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+++|||||+|.++++|++|++.+++..+.++.|.+.++.... .
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~-----------------------------~ 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS-----------------------------A 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC-----------------------------G
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc-----------------------------c
Confidence 35788899999999999999999999999999999999999876553211 1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeE--EEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ--VAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~--i~v 156 (220)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.++ .+.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 2345789999999999999999999999999999999998899999999999999999999997544 888864 888
Q ss_pred Eec
Q 027706 157 DSA 159 (220)
Q Consensus 157 ~~a 159 (220)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 9
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.94 E-value=2.1e-27 Score=176.75 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=105.4
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKI 87 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (220)
.+++|||||+|.+.++|++|++.+++.......+.+... ........... ............+|
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--------~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA--------TKTFTVTEGSH--------HHHHHMDVEGMTSL 73 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETT--------TTEEEEECCCC--------CSSCCCCCCBCCEE
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCc--------ccccccccccc--------ccccccCCCCCCEE
Confidence 379999999999999999999665542211111100000 00000000000 00011134567899
Q ss_pred EEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCCCC
Q 027706 88 FVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDA 165 (220)
Q Consensus 88 ~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~~~ 165 (220)
||+|||+++++++|+++|+.||.|..|.|+.|+.++.++|||||+|.+.++|++||..++ .|.|++|.|.++.++...
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999998655 899999999999877554
Q ss_pred CC
Q 027706 166 GP 167 (220)
Q Consensus 166 ~~ 167 (220)
.+
T Consensus 154 ~~ 155 (158)
T 2kn4_A 154 DS 155 (158)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=4.4e-27 Score=177.40 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=111.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
+++|..+++++|||||+|.++++|++|| .|++..+.++.|.|.++..+.. ..
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~---------------------------~~ 95 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS---------------------------KK 95 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC---------------------------ST
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc---------------------------cc
Confidence 4678889999999999999999999999 5999999999998876643211 02
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..++ .|.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988766 4678899999999999999999998655 89999999999
Q ss_pred ccCCC
Q 027706 159 ATPLD 163 (220)
Q Consensus 159 a~~~~ 163 (220)
+.++.
T Consensus 171 a~~k~ 175 (175)
T 1fje_B 171 TGEKG 175 (175)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98763
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=7.4e-27 Score=175.52 Aligned_cols=126 Identities=16% Similarity=0.255 Sum_probs=109.9
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIG 84 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
..+++++|||||+|.++++|++|| .+++..+.++.|.+.++.... .....
T Consensus 45 ~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~-----------------------------~~~~~ 94 (172)
T 2g4b_A 45 VQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ-----------------------------PLPGA 94 (172)
T ss_dssp EEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCC-----------------------------CCTTT
T ss_pred eEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccC-----------------------------CCCCC
Confidence 345788999999999999999999 899999999999875432100 12336
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEecc
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 160 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a~ 160 (220)
.+|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..+ ..+.|++|.|.+|.
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 89999999999999999999999999999999999889999999999999999999999754 48999999999973
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=6.7e-26 Score=170.52 Aligned_cols=131 Identities=21% Similarity=0.362 Sum_probs=105.4
Q ss_pred CCCCCCCC--CcccEEEEEecCHHHHHhhCCCCCCCCcc---cccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSK--AHRGIGFITFASAVVVDRATPKEDDFRPV---GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 75 (220)
Q Consensus 1 ~~rD~~tg--~srG~aFV~F~~~~~A~~Ai~~~~~~~~~---~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 75 (220)
|++|+.++ +++|||||+|.+.++|++||+.|++..+. .+.+.+.++...
T Consensus 35 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~-------------------------- 88 (175)
T 3nmr_A 35 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE-------------------------- 88 (175)
T ss_dssp EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGG--------------------------
T ss_pred EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccc--------------------------
Confidence 35677776 99999999999999999999989887754 333332211100
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC---
Q 027706 76 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC--- 150 (220)
Q Consensus 76 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~--- 150 (220)
........+|||+|||+.+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|+..++ .+.
T Consensus 89 --~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 165 (175)
T 3nmr_A 89 --KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC 165 (175)
T ss_dssp --CCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC
T ss_pred --ccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 0023356899999999999999999999999999999999985 58899999999999999999997555 444
Q ss_pred CeEEEEEecc
Q 027706 151 GQQVAIDSAT 160 (220)
Q Consensus 151 g~~i~v~~a~ 160 (220)
+++|.|.||.
T Consensus 166 ~~~l~V~~ad 175 (175)
T 3nmr_A 166 SSPMVVKFAD 175 (175)
T ss_dssp SSCCEEEECC
T ss_pred CCCeEEEecC
Confidence 4999999974
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=4.1e-26 Score=184.99 Aligned_cols=138 Identities=13% Similarity=0.153 Sum_probs=120.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+.||+++|||||+|.+.++|++|++.|++..+.++.|.|.++..+... ..
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~--------------------------~~ 180 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT--------------------------PA 180 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC--------------------------TT
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC--------------------------cc
Confidence 3578899999999999999999999999999999999999998776432110 02
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~-~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....+|||+|||+.+ ++++|+++|+.||.|..+.|+.+. +|.++|+|||+|.+.++|.+|+..++ .|.|++|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3456899999999995 999999999999999999999985 78999999999999999999997544 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++..+
T Consensus 260 ~a~~~~~~ 267 (284)
T 3smz_A 260 FCAPGPPG 267 (284)
T ss_dssp ECCSSSCH
T ss_pred EecCCCcc
Confidence 99987664
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=8.5e-26 Score=183.77 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=110.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESS 80 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
|++|+. +.++|||||+|.+.++|++||..|++..+.++.|.|.++......... ...
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----------------------~~~ 206 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----------------------DSA 206 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----------------------ccc
Confidence 456665 889999999999999999999999999999999998776533221110 013
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhccCcEEEEEeecCCC-CCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPK-RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~-~~~~~l~~~F~~~G~i~~~~i~~d~~-tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
.....+|||+|||+. +++++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.++|.+|+ .++ .|.|++|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999876 6999999999999999999999 766 899999999
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
.++.+++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999863
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=5.8e-24 Score=167.39 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=107.2
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhh------hcccCCCC--CCCCCCCCCCCCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATR------YAALGAPT--LYDHPGSFYGRGESSQR 82 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r------~~~~~~~~--~~~~~~~~~~~~~~~~~ 82 (220)
+|||||+|.+.++|++||+.|++..+.++.|.|.++........... ........ ....+... .......
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 149 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSK--NFQNIFP 149 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSG--GGTTCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCcccc--ccccCCC
Confidence 89999999999999999999999999999999988764422110000 00000000 00000000 0011234
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC-CeEEEEEe
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDS 158 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~-g~~i~v~~ 158 (220)
+..+|||+|||+.+++++|+++|++|| .|..|.|+.+ .+|||||+|.+.++|.+|+..++ .+. |++|.|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 579999999999999999999999999 9999998653 47899999999999999997544 888 99999999
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9874
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=7.1e-24 Score=171.59 Aligned_cols=149 Identities=23% Similarity=0.283 Sum_probs=110.2
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhh------hhc-----------------ccC-
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAAT------RYA-----------------ALG- 62 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~------r~~-----------------~~~- 62 (220)
++++||||||+|.+.++|++||+.|++..+.++.|.|.++.......... +.. ...
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccC
Confidence 89999999999999999999999999999999999998885544211000 000 000
Q ss_pred ---CC-----------------------------------CCCCCCCCCCC--------------------CCCCCCCCC
Q 027706 63 ---AP-----------------------------------TLYDHPGSFYG--------------------RGESSQRIG 84 (220)
Q Consensus 63 ---~~-----------------------------------~~~~~~~~~~~--------------------~~~~~~~~~ 84 (220)
.+ .....+..... .........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (282)
T 3pgw_A 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN 207 (282)
T ss_pred cCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCC
Confidence 00 00000000000 001123456
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC-CeEEEEEecc
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDSAT 160 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~-g~~i~v~~a~ 160 (220)
++|||+|||..+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|+..++ .|. |+.|+|.|++
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 889999999999999999999999999999998653 5899999999999999998665 788 9999999986
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.91 E-value=1.2e-24 Score=168.45 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=104.8
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCC-CC--CCCCCCCC-----CCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT-LY--DHPGSFYG-----RGESSQ 81 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~-~~--~~~~~~~~-----~~~~~~ 81 (220)
+||||||+|.+.++|++||+.|++..+.++.|.|.++..+..............+. .. ..+..... ......
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 58999999999999999999999999999999998875443211000000000000 00 00000000 000012
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcE--EEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCe----E
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ----Q 153 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i--~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~----~ 153 (220)
.+..+|||+|||+++++++|+++|++||.| ..++++.+. +.++|+|||+|.+.++|.+||..++ +|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456899999999999999999999999999 899998874 5567999999999999999997655 66655 6
Q ss_pred EEEEec
Q 027706 154 VAIDSA 159 (220)
Q Consensus 154 i~v~~a 159 (220)
+.|++|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=5.9e-24 Score=163.43 Aligned_cols=145 Identities=12% Similarity=0.166 Sum_probs=107.3
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhh------cccCC-CC-CCCCCCCCCCCCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY------AALGA-PT-LYDHPGSFYGRGESSQR 82 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~------~~~~~-~~-~~~~~~~~~~~~~~~~~ 82 (220)
+|||||+|.+.++|++||+.|++..+.++.|.|.++............ ..... +. ....+.. ........
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~ 118 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGS--KNFQNIFP 118 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCC--CCCSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccc--cccccCCC
Confidence 899999999999999999999999999999999877544321110000 00000 00 0000000 00011234
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC-CeEEEEEe
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDS 158 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~-g~~i~v~~ 158 (220)
+..+|||+|||..+++++|+++|+.|| .|..|.|+.+ .+|+|||+|.+.++|.+|+..++ .+. |++|.|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 579999999999999999999999999 9999999764 37899999999999999997544 888 99999999
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.90 E-value=7.7e-24 Score=171.56 Aligned_cols=122 Identities=14% Similarity=0.215 Sum_probs=110.0
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKI 87 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (220)
++++|||||+|.+.++|++||+.+++..+.++.|.+.++ ....+|
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~-----------------------------------~~~~~l 98 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ-----------------------------------PTDALL 98 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-----------------------------------CCSCEE
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-----------------------------------CCCCEE
Confidence 678999999999999999999999999999999876432 134799
Q ss_pred EEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccCCCC
Q 027706 88 FVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPLDD 164 (220)
Q Consensus 88 ~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~~~~ 164 (220)
||+|||+++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.++..
T Consensus 99 ~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 99 CVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred EEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999964 4489999999999987643
No 20
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=4.7e-24 Score=157.34 Aligned_cols=138 Identities=19% Similarity=0.294 Sum_probs=108.2
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCC-CCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKE-DDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGK 85 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~-~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (220)
....+|+++|+|.+.++|++|++.+ ++..+.+ .+.+.++........... ..............+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 74 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH-------------HHHHHMHRDSCPLDC 74 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-------------SCCCCSCSSSSTTSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-------------cccccccccCCCCCC
Confidence 3567999999999999999999999 8888888 877765533221110000 000001112455679
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccCCC
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPLD 163 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~~~ 163 (220)
+|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+|+.. ...|.|++|.|.++.++.
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999999999999999886 689999999999999999974 448999999999998764
No 21
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=2.2e-23 Score=167.22 Aligned_cols=122 Identities=26% Similarity=0.348 Sum_probs=107.4
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKI 87 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (220)
.+++|||||+|.+.++|++||..+++..+.++.|.|.++. ...+|
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~-----------------------------------~~~~l 99 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT-----------------------------------HGAAL 99 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-----------------------------------CSSEE
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-----------------------------------cCCcc
Confidence 4578999999999999999999999999999999875442 24689
Q ss_pred EEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC---c---cCCeEEEEEeccC
Q 027706 88 FVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---E---ICGQQVAIDSATP 161 (220)
Q Consensus 88 ~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~---~---i~g~~i~v~~a~~ 161 (220)
||+|||+.+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..++ . ..+++|.|.++.+
T Consensus 100 ~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 100 TVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 99999999999999999999999999999999 689999999999999999999987542 2 3499999999987
Q ss_pred CCCC
Q 027706 162 LDDA 165 (220)
Q Consensus 162 ~~~~ 165 (220)
....
T Consensus 179 ~~~~ 182 (261)
T 3sde_A 179 FDDE 182 (261)
T ss_dssp EESS
T ss_pred cCcc
Confidence 6544
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=5.4e-23 Score=167.21 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 81 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
++|+.+ ++|||||+|.+.++|++|| .+++..+.++.|.+.++
T Consensus 74 ~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~----------------------------------- 115 (292)
T 2ghp_A 74 ADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL----------------------------------- 115 (292)
T ss_dssp EECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC-----------------------------------
T ss_pred EECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC-----------------------------------
Confidence 345543 6899999999999999999 48888899999876422
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
...+|||+|||+.+++++|+++|+.|| .|..|.|+.+.. +.++|||||+|.+.++|.+|+..+ ..|.|+.|.|.+
T Consensus 116 -~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 -TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp -CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 358999999999999999999999999 999999999865 778999999999999999999744 489999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 194 a~~~~~~ 200 (292)
T 2ghp_A 194 SNPLEKS 200 (292)
T ss_dssp CCCC---
T ss_pred CCCCccc
Confidence 9876543
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=138.05 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
....++|||+|||+++|+++|+++|++||.|..|.|++|+.++.++|||||+|.+.++|++|++.+ ..|.|++|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999754 489999999999
Q ss_pred ccC
Q 027706 159 ATP 161 (220)
Q Consensus 159 a~~ 161 (220)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 24
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=6.6e-22 Score=146.69 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998555 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99876543
No 25
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=2.2e-22 Score=145.79 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=80.1
Q ss_pred EEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCC
Q 027706 13 IGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRL 92 (220)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 92 (220)
++|++|++...|..||+.|++....++... .....++.....++|||+||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~------------------------------~~~~~~~~~~~~~~l~V~nL 55 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM------------------------------SYGRPPPDVEGMTSLKVDNL 55 (135)
T ss_dssp -----------------------------C------------------------------CSCCSCSSGGGCCCEEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC------------------------------CcCCCCCCCCCCCEEEEeCC
Confidence 567788888888888888876654433210 00111114556789999999
Q ss_pred CCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCCCCC
Q 027706 93 PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAG 166 (220)
Q Consensus 93 p~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~~~~ 166 (220)
|+++++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .|.|++|.|.++.++....
T Consensus 56 p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 56 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 9999999999999999999999999999899999999999999999999997555 8999999999998765543
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=134.71 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC-C--ccCCeEEEEEec
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-H--EICGQQVAIDSA 159 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~-~--~i~g~~i~v~~a 159 (220)
+++|||+|||+++|+++|+++|++|| .|.+|+|++|+.|+.++|||||+|.+.++|++||+.+ + .+.|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999754 3 689999999999
Q ss_pred cCCCCC
Q 027706 160 TPLDDA 165 (220)
Q Consensus 160 ~~~~~~ 165 (220)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887544
No 27
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=7.4e-22 Score=168.70 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||..++ .|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997655 89999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987654
No 28
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=131.89 Aligned_cols=88 Identities=32% Similarity=0.466 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEec
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSA 159 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a 159 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.+++.|.|+.|.|.++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEec
Confidence 45567899999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred cCCCCCCC
Q 027706 160 TPLDDAGP 167 (220)
Q Consensus 160 ~~~~~~~~ 167 (220)
.++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqg_A 91 NSKQSQDS 98 (103)
T ss_dssp CTTCCCCC
T ss_pred CCCCcCCC
Confidence 98766543
No 29
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-20 Score=131.64 Aligned_cols=86 Identities=34% Similarity=0.541 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 56678999999999999999999999999999999999999999999999999999999999998655 89999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9865433
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9.6e-21 Score=129.75 Aligned_cols=88 Identities=35% Similarity=0.682 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||. +.+.|.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999997 44489999999999
Q ss_pred ccCCCCCCC
Q 027706 159 ATPLDDAGP 167 (220)
Q Consensus 159 a~~~~~~~~ 167 (220)
+.++....+
T Consensus 86 a~~~~~~~~ 94 (99)
T 2dgs_A 86 AEPRDSKSS 94 (99)
T ss_dssp CCCCCCCCC
T ss_pred CCCCcccCC
Confidence 998766544
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=128.62 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999997655 89999999999
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99876653
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=3.7e-20 Score=130.29 Aligned_cols=88 Identities=32% Similarity=0.439 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||+.++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999997554 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++.....
T Consensus 91 ~a~~~~~~~~ 100 (115)
T 2dgo_A 91 WATRKPPAPK 100 (115)
T ss_dssp ESSCCCCCSC
T ss_pred EccCCCCCCc
Confidence 9998766544
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=130.49 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45667999999999999999999999999999999999999999999999999999999999998555 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++....+
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9998766544
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.5e-20 Score=132.36 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++....+
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpz_A 101 LKRSKNDSKS 110 (115)
T ss_dssp CCCCSCCCCC
T ss_pred EcCCCCcCCC
Confidence 9998876554
No 35
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=130.60 Aligned_cols=88 Identities=26% Similarity=0.453 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.. .+.|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 456679999999999999999999999999999999999999999999999999999999999974 448999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2dnm_A 89 VARYGRRDLS 98 (103)
T ss_dssp ECSSCCSCCC
T ss_pred ECCcCCCCCC
Confidence 9987655433
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=132.89 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.++ .|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346899999999999999999999999999999999999999999999999999999999997555 899999999999
Q ss_pred cCCCC
Q 027706 160 TPLDD 164 (220)
Q Consensus 160 ~~~~~ 164 (220)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 75543
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=129.29 Aligned_cols=87 Identities=23% Similarity=0.436 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567999999999999999999999999999999999999899999999999999999999998555 8999999999
Q ss_pred eccCCCCCC
Q 027706 158 SATPLDDAG 166 (220)
Q Consensus 158 ~a~~~~~~~ 166 (220)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998876543
No 38
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=4.7e-21 Score=143.41 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=77.4
Q ss_pred EEecCHHHHHhhCCCCCCCCcc--cccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCC
Q 027706 16 ITFASAVVVDRATPKEDDFRPV--GRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLP 93 (220)
Q Consensus 16 V~F~~~~~A~~Ai~~~~~~~~~--~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 93 (220)
.+|++.++|+.|+..+...... ++-+......... ........ ...+.. ....+......++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~----~~~~~~~~----~s~~~~-~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA----IHSYERVR----NEDDDE-LEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc----ccCccccc----cCCCCC-CCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999887765422 3333221110000 00000000 000000 00111134567899999999
Q ss_pred CCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCCCCCCC
Q 027706 94 QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAGP 167 (220)
Q Consensus 94 ~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~~~~~~ 167 (220)
+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.++.++.....
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 999999999999999999999999999999999999999999999999997544 89999999999988765543
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=132.11 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCc--EEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC------ccCC
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICG 151 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~--i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~------~i~g 151 (220)
......+|||+|||+++|+++|+++|++||. |.+|+|++|+.|++++|||||+|.+.++|++||+.++ .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4566789999999999999999999999995 5689999999999999999999999999999987433 4899
Q ss_pred eEEEEEeccC
Q 027706 152 QQVAIDSATP 161 (220)
Q Consensus 152 ~~i~v~~a~~ 161 (220)
++|.|++|++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=126.86 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~ 160 (220)
..++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+.. ...|.|++|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 468999999999999999999999999999999999999999999999999999999999974 448999999999998
Q ss_pred CCCCC
Q 027706 161 PLDDA 165 (220)
Q Consensus 161 ~~~~~ 165 (220)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 77554
No 41
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=1.3e-21 Score=153.77 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC--cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
..++|||+|||+++++++|+++|++|| .|.+|.|+.|+.|++++|||||+|.+.++|++||..++ .|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999998655 89999999999
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=129.40 Aligned_cols=88 Identities=27% Similarity=0.462 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++....+
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9998766544
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=127.93 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEE-EeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
..++|||+|||+++++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++|+..++ .|.|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 999998999999999999999999999998555 899999999999
Q ss_pred cCCCCCC
Q 027706 160 TPLDDAG 166 (220)
Q Consensus 160 ~~~~~~~ 166 (220)
.++....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8876553
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=130.68 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.++ .|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 89999999999999999999997555 89999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-20 Score=128.49 Aligned_cols=88 Identities=27% Similarity=0.496 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecC-CCCCCccceEEEEECCHHHHHHHHhcC---CccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD-PKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d-~~tg~~~g~afV~f~~~~~a~~al~~~---~~i~g~~i~ 155 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|++||..+ ..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4567799999999999999999999999999999999999 789999999999999999999999754 489999999
Q ss_pred EEeccCCCCCCC
Q 027706 156 IDSATPLDDAGP 167 (220)
Q Consensus 156 v~~a~~~~~~~~ 167 (220)
|.++.++.....
T Consensus 91 v~~a~~~~~~~~ 102 (107)
T 2cph_A 91 LEWADSEVTVQS 102 (107)
T ss_dssp EEECCCCCCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999998765543
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.3e-20 Score=127.65 Aligned_cols=85 Identities=21% Similarity=0.450 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCC-CCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~t-g~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
...+.++|||+|||+++++++|+++|+.|| |..|.|+.++.+ ++++|||||+|.+.++|++|| .++ .|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999888 999999999999999999999 544 899999999
Q ss_pred EeccCCCCCC
Q 027706 157 DSATPLDDAG 166 (220)
Q Consensus 157 ~~a~~~~~~~ 166 (220)
.++.++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999876553
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=4.1e-20 Score=127.92 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC---eEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG---QQVA 155 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g---~~i~ 155 (220)
....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||..++ .+.+ ++|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567999999999999999999999999999999999997 79999999999999999999997544 7777 9999
Q ss_pred EEeccCCCCCCC
Q 027706 156 IDSATPLDDAGP 167 (220)
Q Consensus 156 v~~a~~~~~~~~ 167 (220)
|.++.++.++.+
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998876654
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=128.80 Aligned_cols=88 Identities=32% Similarity=0.485 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++ .|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 1x5s_A 88 QAGKSSDNRS 97 (102)
T ss_dssp EEECCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9988765533
No 49
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=6.6e-20 Score=133.24 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999998665 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99877554
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.5e-20 Score=126.90 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.|| |..|.|+.++.+++++|||||+|.+.++|++|| .++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 455678999999999999999999999997 999999999999999999999999999999999 555 8999999999
Q ss_pred eccCCCCCC
Q 027706 158 SATPLDDAG 166 (220)
Q Consensus 158 ~a~~~~~~~ 166 (220)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998876543
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=126.09 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+..++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999997 89999999999999999999997554 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++..+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99887553
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=2.5e-20 Score=129.24 Aligned_cols=87 Identities=25% Similarity=0.489 Sum_probs=78.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc---CCeEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQV 154 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i---~g~~i 154 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+..++ .+ .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45567899999999999999999999999999999999999999999999999999999999997555 55 88999
Q ss_pred EEEeccCCCCCC
Q 027706 155 AIDSATPLDDAG 166 (220)
Q Consensus 155 ~v~~a~~~~~~~ 166 (220)
.|.++.++....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998876543
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.6e-20 Score=128.07 Aligned_cols=88 Identities=24% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--------CCccCC
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--------SHEICG 151 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--------~~~i~g 151 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.. ...|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 445678999999999999999999999999999999999999999999999999999999999974 448999
Q ss_pred eEEEEEeccCCCCCCC
Q 027706 152 QQVAIDSATPLDDAGP 167 (220)
Q Consensus 152 ~~i~v~~a~~~~~~~~ 167 (220)
+.|.|.++.++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999998766543
No 54
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3e-20 Score=123.02 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=74.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~~ 162 (220)
.+|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+.. ...+.|++|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999999999999999999999999999999999999974 44899999999999876
Q ss_pred C
Q 027706 163 D 163 (220)
Q Consensus 163 ~ 163 (220)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=127.29 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4557899999999999999999999999999999999998 88999999999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998776544
No 56
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=129.00 Aligned_cols=88 Identities=32% Similarity=0.524 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.. .+.|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 456779999999999999999999999999999999999999999999999999999999999975 3389999999999
Q ss_pred ccCCCCCCC
Q 027706 159 ATPLDDAGP 167 (220)
Q Consensus 159 a~~~~~~~~ 167 (220)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (105)
T 2dh8_A 92 CTPRGMQPS 100 (105)
T ss_dssp SCCSSCCTT
T ss_pred ccCCCCCCC
Confidence 998766543
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=124.32 Aligned_cols=81 Identities=31% Similarity=0.443 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a 159 (220)
....+|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..+ ..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999989999999999999999999999754 4899999999999
Q ss_pred cCC
Q 027706 160 TPL 162 (220)
Q Consensus 160 ~~~ 162 (220)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=5.5e-20 Score=128.25 Aligned_cols=86 Identities=35% Similarity=0.599 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998655 89999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=127.15 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhc-cCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--c-cCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E-ICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~-i~g~~i~v 156 (220)
..+.++|||+|||+++++++|+++|++ ||.|..|.|+.++ ++.++|||||+|.+.++|++||..++ . |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999998655 6 99999999
Q ss_pred EeccCCCCCCC
Q 027706 157 DSATPLDDAGP 167 (220)
Q Consensus 157 ~~a~~~~~~~~ 167 (220)
.++.++.....
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99987765543
No 60
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=128.70 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEE--------EEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCcc
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEI 149 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--------~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i 149 (220)
.....++|||+|||+++++++|+++|+.||.|. .|.|+.++.+++++|||||+|.+.++|++||.. ...|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455679999999999999999999999999999 699999999999999999999999999999974 4489
Q ss_pred CCeEEEEEeccCCCCCC
Q 027706 150 CGQQVAIDSATPLDDAG 166 (220)
Q Consensus 150 ~g~~i~v~~a~~~~~~~ 166 (220)
.|+.|.|.++.++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998876553
No 61
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=129.12 Aligned_cols=86 Identities=35% Similarity=0.622 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~a 159 (220)
....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.. .+.|.|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 44568999999999999999999999999999999999999999999999999999999999975 33899999999999
Q ss_pred cCCCCCC
Q 027706 160 TPLDDAG 166 (220)
Q Consensus 160 ~~~~~~~ 166 (220)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 9876653
No 62
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=3.9e-20 Score=132.25 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||.. ...|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999974 448999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876554
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=123.01 Aligned_cols=81 Identities=25% Similarity=0.471 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.++ .|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997655 8999999999
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=9.5e-20 Score=121.75 Aligned_cols=80 Identities=29% Similarity=0.632 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|+.... .|.|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999997433 89999999988
Q ss_pred c
Q 027706 159 A 159 (220)
Q Consensus 159 a 159 (220)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=126.11 Aligned_cols=85 Identities=20% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCC---CCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~---tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
..++|||+|||+++++++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999998876 66899999999999999999998554 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++....+
T Consensus 84 ~a~~~~~~~~ 93 (98)
T 2cpf_A 84 ISERATKPAS 93 (98)
T ss_dssp CSSCSSCCCC
T ss_pred EccCCCCCCC
Confidence 9987765443
No 66
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=7.2e-21 Score=128.19 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=68.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccC--cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEecc
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 160 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a~ 160 (220)
.+|||+|||+++++++|+++|++|| .|.++.|+.|+.+++++|||||+|.+.++|++|++.+ ..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999654 48999999999998
Q ss_pred CCCCC
Q 027706 161 PLDDA 165 (220)
Q Consensus 161 ~~~~~ 165 (220)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87554
No 67
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=127.32 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+.. ...|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999974 448999999999
Q ss_pred eccCCCC
Q 027706 158 SATPLDD 164 (220)
Q Consensus 158 ~a~~~~~ 164 (220)
++.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=123.36 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..++ .|.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999998555 8999999999
Q ss_pred eccC
Q 027706 158 SATP 161 (220)
Q Consensus 158 ~a~~ 161 (220)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=8.4e-20 Score=124.34 Aligned_cols=81 Identities=16% Similarity=0.375 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~ 161 (220)
+++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999974 4489999999999987
Q ss_pred CCC
Q 027706 162 LDD 164 (220)
Q Consensus 162 ~~~ 164 (220)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=7.2e-20 Score=127.75 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+.. ...|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999974 448999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++..+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99876543
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-19 Score=122.86 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4556799999999999999999999999999999999998544 68999999999999999997555 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cqi_A 89 WATTPSSQKS 98 (103)
T ss_dssp ECCCTTCCCC
T ss_pred ECCCCccccc
Confidence 9998765543
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=126.57 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+.. ...|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455678999999999999999999999999999999999999999999999999999999999974 448999999999
Q ss_pred eccCCC
Q 027706 158 SATPLD 163 (220)
Q Consensus 158 ~a~~~~ 163 (220)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-19 Score=122.58 Aligned_cols=86 Identities=34% Similarity=0.604 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456679999999999999999999999999999999999854 389999999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++.....
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2cq3_A 89 NATARVMTNS 98 (103)
T ss_dssp ECCSSCCCCC
T ss_pred EcccCCCCCC
Confidence 9998765543
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=8.1e-20 Score=121.48 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~ 158 (220)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+.. ...+.|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999989999999999999999999999964 4489999999999
Q ss_pred cc
Q 027706 159 AT 160 (220)
Q Consensus 159 a~ 160 (220)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 75
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=7.2e-20 Score=128.87 Aligned_cols=81 Identities=26% Similarity=0.440 Sum_probs=71.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a~~ 161 (220)
..+|||+|||+++++++|+++|++||.|.+|+|+.|+ +.++|||||+|.+.++|++||+.+ ..|.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 447999999999999999999754 489999999999987
Q ss_pred CCCCC
Q 027706 162 LDDAG 166 (220)
Q Consensus 162 ~~~~~ 166 (220)
+..+.
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=124.52 Aligned_cols=84 Identities=19% Similarity=0.320 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEE-EEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeE---
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ--- 153 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~-~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~--- 153 (220)
.....++|||+|||+++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++|+..++ .+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 99999999999999999999999999999998655 788998
Q ss_pred -EEEEeccCCC
Q 027706 154 -VAIDSATPLD 163 (220)
Q Consensus 154 -i~v~~a~~~~ 163 (220)
|+|.+|.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999998653
No 77
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-19 Score=123.36 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||..+ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999996 5889999999999999999999744 48999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.+....
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99765444
No 78
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=8.4e-20 Score=131.08 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .|.|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997544 8999999999
Q ss_pred eccCCCC
Q 027706 158 SATPLDD 164 (220)
Q Consensus 158 ~a~~~~~ 164 (220)
++.++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987654
No 79
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=122.11 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 154 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~----~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i 154 (220)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.++.+ +|||||+|.+.++|++|+..++ .|.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999998765 8899999999999999998655 8999999
Q ss_pred EEEeccCCCCC
Q 027706 155 AIDSATPLDDA 165 (220)
Q Consensus 155 ~v~~a~~~~~~ 165 (220)
.|.+|.++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876544
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.6e-19 Score=121.96 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC-----e
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG-----Q 152 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g-----~ 152 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.++ .|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456799999999999999999999999999999999876 799999999999999998666 7888 9
Q ss_pred EEEEEeccCCCCC
Q 027706 153 QVAIDSATPLDDA 165 (220)
Q Consensus 153 ~i~v~~a~~~~~~ 165 (220)
.|.|.++.++...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999986544
No 81
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=1.4e-20 Score=136.58 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=71.3
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCEEEEc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVG 90 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 90 (220)
+|+||.+|..++.+-.++.++....-.+..-. ... ............+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~--------------~~g--------------~~~~~~~~~~~~~lfV~ 52 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGR--------------GSG--------------DSEFTVQSTTGHCVHMR 52 (139)
T ss_dssp ------------------------------------------------------------------------CCCCEECC
T ss_pred CCcccccccCccccchhcccchhccCCCCCCC--------------CCC--------------CcccCCCCCCCCEEEEe
Confidence 47899999999888888766554321111000 000 00001134456899999
Q ss_pred CCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEeccCCC
Q 027706 91 RLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 163 (220)
Q Consensus 91 nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a~~~~ 163 (220)
|||+++++++|+++|++|| |..|.|+.|+. ++++|||||+|.+.++|++||. +...|.++.|.|..+.+++
T Consensus 53 nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 53 GLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred CCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999 67999999976 9999999999999999999994 3348999999999987654
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=124.83 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC----CccCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~i~v 156 (220)
..+.++|||+|||+++++++|+++|++||.|.+|.|+.+ ||||||+|++.++|++|+..+ ..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999875 689999999999999999733 3799999999
Q ss_pred EeccCCCCCC
Q 027706 157 DSATPLDDAG 166 (220)
Q Consensus 157 ~~a~~~~~~~ 166 (220)
.++.++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998775543
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.1e-19 Score=122.26 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEE-EEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~-~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~ 157 (220)
......+|||+|||+++++++|+++|+.||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. ...|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 889998 7899999999999999999999975 448999999999
Q ss_pred eccCCC
Q 027706 158 SATPLD 163 (220)
Q Consensus 158 ~a~~~~ 163 (220)
++.+++
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 84
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=3.1e-19 Score=119.68 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
..++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+ .++ .+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999989999999999999999999999 544 8999999999997
Q ss_pred CC
Q 027706 161 PL 162 (220)
Q Consensus 161 ~~ 162 (220)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 85
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-19 Score=123.07 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCc-EEEEEee-cCCCCCCccceEEEEECCHHHHHHHHhcC----CccCCeEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 155 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~~~i~-~d~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~i~ 155 (220)
...++|||+|||+++++++|+++|+.||. |..|.|+ .++.++.++|||||+|.+.++|++|+..+ ..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 88889999999999999999999999754 378999999
Q ss_pred EEeccCCCCCC
Q 027706 156 IDSATPLDDAG 166 (220)
Q Consensus 156 v~~a~~~~~~~ 166 (220)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999876543
No 86
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=2e-20 Score=128.49 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCC-eE
Q 027706 83 IGKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICG-QQ 153 (220)
Q Consensus 83 ~~~~l~v~nlp~------~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g-~~ 153 (220)
..++|||+|||+ ++++++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||..+ ..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999999999999999999999999999999754 48998 99
Q ss_pred EEEEeccCCC
Q 027706 154 VAIDSATPLD 163 (220)
Q Consensus 154 i~v~~a~~~~ 163 (220)
|.|.++.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998653
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=121.21 Aligned_cols=82 Identities=21% Similarity=0.414 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCC-ccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEec
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG-HRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 159 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~-~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a 159 (220)
..++|||+|||+++++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|++|+.. ...+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357999999999999999999999999999999999887766 899999999999999999974 44899999999999
Q ss_pred cCCCC
Q 027706 160 TPLDD 164 (220)
Q Consensus 160 ~~~~~ 164 (220)
.+..+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 88
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-20 Score=129.66 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|| .++ .|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 554 89999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
+.++..
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 987644
No 89
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3.2e-19 Score=126.01 Aligned_cols=81 Identities=25% Similarity=0.388 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.++ .|.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998655 8999999999
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 90
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=122.81 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEE--------EEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCcc
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEI 149 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i 149 (220)
.....++|||+|||+++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++. ...+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4566799999999999999999999999999999 99999999999999999999999999999974 4489
Q ss_pred CCeEEEEEecc
Q 027706 150 CGQQVAIDSAT 160 (220)
Q Consensus 150 ~g~~i~v~~a~ 160 (220)
.|+.|.|.+|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=119.16 Aligned_cols=82 Identities=11% Similarity=0.247 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
......+|||+|||+++++++|+++|+.| .|..|.|+.+ .+++++|||||+|.+.++|.+||. ++ .|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 789999999999999999999998 66 8999999999
Q ss_pred eccCCCC
Q 027706 158 SATPLDD 164 (220)
Q Consensus 158 ~a~~~~~ 164 (220)
++.++.+
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987743
No 92
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=129.58 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEE--EEeecCCCCCCccceEEEEECCHHHHHHHHh--cCC----ccCC
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSH----EICG 151 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~~----~i~g 151 (220)
.....++|||+|||+++++++|+++|++||.|.. |+|+.|+.|++++|||||+|.+. +|.+|+. +.. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4566789999999999999999999999999976 99999999999999999999999 9999986 444 7899
Q ss_pred eEEEEEeccCCCCC
Q 027706 152 QQVAIDSATPLDDA 165 (220)
Q Consensus 152 ~~i~v~~a~~~~~~ 165 (220)
+.|.|.++.++...
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999886544
No 93
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=4.1e-19 Score=119.88 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++|+..++ .+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 78899999999999999999997544 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.+....
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99876544
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-18 Score=121.75 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++||+.++ .|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 5589999999999999999997544 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99876544
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=123.56 Aligned_cols=80 Identities=15% Similarity=0.319 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a 159 (220)
.....+|||+|||+++|+++|+++|++||.|.+|.|+.++. +.++|||||+|.+.++|.+||. +.+.+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 44568999999999999999999999999999999999987 9999999999999999999997 344899999999987
Q ss_pred cC
Q 027706 160 TP 161 (220)
Q Consensus 160 ~~ 161 (220)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 96
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.3e-18 Score=123.88 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
..++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .++ .|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999899999999999999999999999 444 8999999999998
Q ss_pred CCCC
Q 027706 161 PLDD 164 (220)
Q Consensus 161 ~~~~ 164 (220)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 97
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=133.00 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC--cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
...+|||+|||+++++++|+++|+.|| .|.+|.|+.|+.+|+++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999999999998654 89999999999
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=122.32 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a 159 (220)
.....+|||+|||+++++++|+++|++||.+ .|.|+.|+ +++++|||||+|.+.++|++||+ +.+.|.++.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4566899999999999999999999999954 99999997 89999999999999999999995 344899999999998
Q ss_pred cCCC
Q 027706 160 TPLD 163 (220)
Q Consensus 160 ~~~~ 163 (220)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=120.87 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|++|+.. ...|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 455678999999999999999999999999999999999975 88999999999999999999974 448999999999
Q ss_pred eccC
Q 027706 158 SATP 161 (220)
Q Consensus 158 ~a~~ 161 (220)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-18 Score=119.13 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC----CccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~i~ 155 (220)
...+.++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|+..+ ..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998864 789999999999999998743 369999999
Q ss_pred EEeccCCCCCC
Q 027706 156 IDSATPLDDAG 166 (220)
Q Consensus 156 v~~a~~~~~~~ 166 (220)
|.++.++....
T Consensus 85 V~~a~~~~~~~ 95 (101)
T 2cq1_A 85 IQYSNHKELKT 95 (101)
T ss_dssp EEECSCSSCCC
T ss_pred EEEcCcccCcC
Confidence 99998776553
No 101
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=119.26 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45567999999999999999999999999977 56666 678999999999999999999998655 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887543
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5.3e-19 Score=122.67 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+. +++++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45567999999999999999999999999999999999997 89999999999999999999998544 8999999999
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 103
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=123.72 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH---HHHhccCcEEEEEeecCCCCC---CccceEEEEECCHHHHHHHHhcCC--ccCC
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRRSH--EICG 151 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~---~~F~~~G~i~~~~i~~d~~tg---~~~g~afV~f~~~~~a~~al~~~~--~i~g 151 (220)
.....++|||+|||+++++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.++ .|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999987754 456999999999999999998554 8999
Q ss_pred eEEEEEeccCCC
Q 027706 152 QQVAIDSATPLD 163 (220)
Q Consensus 152 ~~i~v~~a~~~~ 163 (220)
++|.|.+|.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=122.69 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456899999999999999999999999999988888888899999999999999999999997655 89999999999
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 105
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.9e-19 Score=130.15 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCc---EEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 154 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~---i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i 154 (220)
......+|||+|||+++|+++|+++|+.||. |..|.|+.|+. ++++|||||+|.+.++|++||+ ++ .|.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999977 9999999999999999999998 55 8999999
Q ss_pred EEEeccCC
Q 027706 155 AIDSATPL 162 (220)
Q Consensus 155 ~v~~a~~~ 162 (220)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998754
No 106
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=2.4e-18 Score=118.63 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999986 4599999999999999998544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++.....
T Consensus 79 ~a~~~~~~~~ 88 (103)
T 2dgu_A 79 FAKPPDQKRK 88 (103)
T ss_dssp ECCCCCCCCC
T ss_pred EcCCCcccch
Confidence 9998766544
No 107
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=125.21 Aligned_cols=85 Identities=27% Similarity=0.511 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+..++ .+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 4456899999999999999999999999999999999998899999999999999999999997555 89999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9877554
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=123.67 Aligned_cols=82 Identities=21% Similarity=0.446 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCC-CCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP-KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~-~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
.....++|||+|||+++++++|+++|+.|| |.+|.|+.++ .+++++|||||+|.+.++|.+|| .++ .|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456779999999999999999999999999 9999999998 68999999999999999999999 555 899999999
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 109
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2.3e-19 Score=116.49 Aligned_cols=74 Identities=42% Similarity=0.719 Sum_probs=69.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEec
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 159 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a 159 (220)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++ +.+.+.|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999997 344899999999876
No 110
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-18 Score=118.98 Aligned_cols=81 Identities=20% Similarity=0.173 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--C--ccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H--EICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~--~i~g~~i~ 155 (220)
...+.++|||+|||+++++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..+ + .|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998763 689999999999999999743 3 58999999
Q ss_pred EEeccCCCCCC
Q 027706 156 IDSATPLDDAG 166 (220)
Q Consensus 156 v~~a~~~~~~~ 166 (220)
|.++.++....
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99998876554
No 111
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=125.06 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcE-EEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i-~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~ 158 (220)
.....+|||+|||+++++++|+++|+.||.| ..|.|+.|+ +++++|||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567899999999999999999999999999 889999998 899999999999999999999975 3389999999999
Q ss_pred ccCCC
Q 027706 159 ATPLD 163 (220)
Q Consensus 159 a~~~~ 163 (220)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 112
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=124.47 Aligned_cols=80 Identities=30% Similarity=0.500 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
......+|||+|||+.+++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|+..++ .|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45577999999999999999999999999999999999999999999999999999999999998666 8999999999
Q ss_pred ec
Q 027706 158 SA 159 (220)
Q Consensus 158 ~a 159 (220)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=118.90 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC----ccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~i~ 155 (220)
...++++|||+|||+.+++++|+++|++||.|.++.+++ .||||||+|++.++|.+|+..++ .|.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345678999999999999999999999999999999975 46899999999999999997543 47899999
Q ss_pred EEeccCCC
Q 027706 156 IDSATPLD 163 (220)
Q Consensus 156 v~~a~~~~ 163 (220)
|.++++++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 114
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.9e-19 Score=120.25 Aligned_cols=83 Identities=29% Similarity=0.448 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|++||.. ...|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 455679999999999999999999999874 677888888999999999999999999999974 448999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++.+.
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99886554
No 115
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-19 Score=120.63 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC----ccCCeEEE
Q 027706 81 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVA 155 (220)
Q Consensus 81 ~~~~~~l~v~nlp~-~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~i~ 155 (220)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|+.+ +|||||+|++.++|++|+..++ .|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999875 4799999999999999997433 58999999
Q ss_pred EEeccCCCCC
Q 027706 156 IDSATPLDDA 165 (220)
Q Consensus 156 v~~a~~~~~~ 165 (220)
|.+|.++..-
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999865543
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-19 Score=117.58 Aligned_cols=75 Identities=37% Similarity=0.666 Sum_probs=70.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC-ccCCeEEEEEec
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 159 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~i~v~~a 159 (220)
++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|+..++ .+.|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999997555 889999999987
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=123.02 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC----CccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~i~ 155 (220)
...+.++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|++.++|.+|+..+ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 689999999999999998743 379999999
Q ss_pred EEeccCCCCCC
Q 027706 156 IDSATPLDDAG 166 (220)
Q Consensus 156 v~~a~~~~~~~ 166 (220)
|.++.++....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998876554
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=115.68 Aligned_cols=78 Identities=26% Similarity=0.596 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|++|+..++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 5799999999999999997554 89999999999
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
+.++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 119
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=123.10 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++ +++++|||||+|.+.++|++|+..++ .|.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999997 89999999999999999999997554 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
+|.+.....+
T Consensus 110 ~a~~~~~~~~ 119 (124)
T 2kt5_A 110 LVASQIDLEH 119 (124)
T ss_dssp EECCTTCCCC
T ss_pred EeCCCCCCCC
Confidence 9987655443
No 120
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=119.62 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|+..++ .|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 46899999999999999999999999999999999999999999999999999999999998555 8888888766543
No 121
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=120.22 Aligned_cols=82 Identities=16% Similarity=0.332 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc--------
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-------- 149 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i-------- 149 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||..++ .|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999997 89999999999999999999997544 56
Q ss_pred CCeEEEEEeccCC
Q 027706 150 CGQQVAIDSATPL 162 (220)
Q Consensus 150 ~g~~i~v~~a~~~ 162 (220)
.+++|.|.++.|+
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 6888999999865
No 122
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=2.9e-19 Score=115.96 Aligned_cols=74 Identities=35% Similarity=0.646 Sum_probs=69.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEec
Q 027706 86 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 159 (220)
Q Consensus 86 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~a 159 (220)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+.. .+.+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999974 45899999999875
No 123
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-19 Score=123.90 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
..+.++|||+|||+++++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467899999999999999999999999998433222222378899999999999999999997555 89999999999
Q ss_pred ccCCCCCCC
Q 027706 159 ATPLDDAGP 167 (220)
Q Consensus 159 a~~~~~~~~ 167 (220)
+.++....+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998766544
No 124
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=4.4e-19 Score=122.08 Aligned_cols=85 Identities=20% Similarity=0.495 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEec
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSA 159 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a 159 (220)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++ +++++|||||+|.+.++|++|+.+.+.+.|+.|.|.++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPA 83 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEEC
Confidence 34566899999999999999999999999999999999998 89999999999999999999999666899999999999
Q ss_pred cCCCCC
Q 027706 160 TPLDDA 165 (220)
Q Consensus 160 ~~~~~~ 165 (220)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877654
No 125
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=116.55 Aligned_cols=81 Identities=38% Similarity=0.733 Sum_probs=65.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEec
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSA 159 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a 159 (220)
...+..+|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|+++......+.|+.|.|.+|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 3556799999999999999999999999999999999875 78999999999999996544434678999999999
Q ss_pred cCCCCC
Q 027706 160 TPLDDA 165 (220)
Q Consensus 160 ~~~~~~ 165 (220)
.++...
T Consensus 82 ~~k~~~ 87 (89)
T 3d2w_A 82 EPKHNK 87 (89)
T ss_dssp C-----
T ss_pred CCCCcC
Confidence 987653
No 126
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=2.7e-19 Score=121.44 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a 159 (220)
...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+. ...|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3458999999999999999999999999999888888888999999999999999999999974 44899999999987
Q ss_pred cC
Q 027706 160 TP 161 (220)
Q Consensus 160 ~~ 161 (220)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=115.71 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC--CeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC--GQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~--g~~i~v 156 (220)
..+.++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+..++ .|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445689999999999999999999999999999998753 6899999999999999997544 888 999999
Q ss_pred EeccCCCC
Q 027706 157 DSATPLDD 164 (220)
Q Consensus 157 ~~a~~~~~ 164 (220)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988654
No 128
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=118.15 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCe
Q 027706 81 QRIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ 152 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~------~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~ 152 (220)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+||..++ .|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4456899999999999 789999999999999999988 4688999999999999999999998655 89998
Q ss_pred -EEEEEeccCCC
Q 027706 153 -QVAIDSATPLD 163 (220)
Q Consensus 153 -~i~v~~a~~~~ 163 (220)
+|.|.++...+
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999997654
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.7e-18 Score=114.29 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++|+..++ .|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 355678999999999999999999999999999999964 399999999999999997544 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++....+
T Consensus 78 ~a~~~~~~~~ 87 (92)
T 2dgt_A 78 LSTSRLRTAS 87 (92)
T ss_dssp ESSCCCSCCC
T ss_pred EccCCCCCCC
Confidence 9988755433
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2.3e-19 Score=120.67 Aligned_cols=80 Identities=29% Similarity=0.583 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~~~ 162 (220)
++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.+ |.+|+..++ .+.|+.|.|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999998655 899999999999876
Q ss_pred CCC
Q 027706 163 DDA 165 (220)
Q Consensus 163 ~~~ 165 (220)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=117.46 Aligned_cols=76 Identities=30% Similarity=0.584 Sum_probs=69.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~~ 162 (220)
++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 789999999999999999974 44899999999999887
Q ss_pred CCC
Q 027706 163 DDA 165 (220)
Q Consensus 163 ~~~ 165 (220)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=121.12 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a 159 (220)
.....+|||+|||+++++++|+++|+.| .|..|.|+.|+. |+++|||||+|.+.++|++||. +.+.|.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3445799999999999999999999999 899999999975 9999999999999999999995 334899999999988
Q ss_pred cCC
Q 027706 160 TPL 162 (220)
Q Consensus 160 ~~~ 162 (220)
.++
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 133
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-19 Score=125.59 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
......+|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|++||. ++ .|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999886666666799999999999999999999998 55 8999999999
Q ss_pred eccCCC
Q 027706 158 SATPLD 163 (220)
Q Consensus 158 ~a~~~~ 163 (220)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997653
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=119.78 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--C--ccCCeEEE
Q 027706 81 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H--EICGQQVA 155 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~-~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~--~i~g~~i~ 155 (220)
..++++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|++.++|++|+..+ + .|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999975 4789999999999999999743 2 58999999
Q ss_pred EEeccCCCCCC
Q 027706 156 IDSATPLDDAG 166 (220)
Q Consensus 156 v~~a~~~~~~~ 166 (220)
|.++.++....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998766543
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.4e-18 Score=122.73 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCc---EEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~---i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v 156 (220)
....++|||+|||+++++++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|++||+ +.+.|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999998 89999999976 9999999999999999999997 233899999999
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987553
No 136
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=120.51 Aligned_cols=81 Identities=33% Similarity=0.621 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||.++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|+.. ...|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999874 34899999999999999999975 448999999999
Q ss_pred eccCC
Q 027706 158 SATPL 162 (220)
Q Consensus 158 ~a~~~ 162 (220)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=116.05 Aligned_cols=79 Identities=35% Similarity=0.692 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 162 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~~ 162 (220)
..++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.....+.+++|.|.++.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCC
Confidence 4689999999999999999999999999999999875 78999999999999988766545779999999999887
Q ss_pred CCCC
Q 027706 163 DDAG 166 (220)
Q Consensus 163 ~~~~ 166 (220)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 138
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=117.65 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
....++|||+|||+.+++++|+++|+.||.|..|.|+.+ +|||||+|.+.++|++|+..+ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445789999999999999999999999999999999875 689999999999999999744 489999999999
Q ss_pred ccCCCCCCC
Q 027706 159 ATPLDDAGP 167 (220)
Q Consensus 159 a~~~~~~~~ 167 (220)
+.++....+
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4g_A 96 GKESPDMTS 104 (109)
T ss_dssp CCCCCSSCC
T ss_pred cCCCCCCCC
Confidence 988765443
No 139
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-19 Score=121.99 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEec
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 159 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~a 159 (220)
.....+|||+|||+++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|++||+ +...|.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345689999999999999999999999999887 677777889999999999999999999997 333899999999999
Q ss_pred cCCCCC
Q 027706 160 TPLDDA 165 (220)
Q Consensus 160 ~~~~~~ 165 (220)
.++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 887654
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-17 Score=113.09 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=69.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcc--CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~ 155 (220)
.....++|||+|||+++++++|+++|++| |.|..|.++ +|||||+|.+.++|++||..++ .|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45567899999999999999999999999 999999874 5699999999999999997555 89999999
Q ss_pred EEeccCCCCC
Q 027706 156 IDSATPLDDA 165 (220)
Q Consensus 156 v~~a~~~~~~ 165 (220)
|.++.++...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpd_A 83 VTLAKPVDKD 92 (99)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 141
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=4.2e-18 Score=112.29 Aligned_cols=73 Identities=10% Similarity=0.180 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
..+..|||+||++.++|++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.+| .+.|++|.|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999865 68999999999999999998766 899999999998
Q ss_pred c
Q 027706 160 T 160 (220)
Q Consensus 160 ~ 160 (220)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-20 Score=129.65 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEE--------EEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccC
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 150 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 150 (220)
..+.++|||+|||+++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||..++ .|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999998 9999998999999999999999999999997554 899
Q ss_pred CeEEEEEeccCCCCC
Q 027706 151 GQQVAIDSATPLDDA 165 (220)
Q Consensus 151 g~~i~v~~a~~~~~~ 165 (220)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876544
No 143
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=120.41 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 154 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~----~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i 154 (220)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+..++ .|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999988753 57899999999999999999997655 8999999
Q ss_pred EEEeccCCCC
Q 027706 155 AIDSATPLDD 164 (220)
Q Consensus 155 ~v~~a~~~~~ 164 (220)
.|.+|.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987643
No 144
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.6e-18 Score=123.49 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEE--EEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~ 157 (220)
.....+|||+|||+++++++|+++|+.| .|. .|.|+.|+. |+++|||||+|.+.++|++||.. ...|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 4567899999999999999999999999 676 899999977 99999999999999999999974 348999999999
Q ss_pred eccCC
Q 027706 158 SATPL 162 (220)
Q Consensus 158 ~a~~~ 162 (220)
.+.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 145
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.2e-18 Score=114.81 Aligned_cols=80 Identities=26% Similarity=0.574 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.++ .|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999864 6899999999999999997544 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99876544
No 146
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=120.16 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCC---CCccceEEEEECCHHHHHHHHhcCCccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~t---g~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~ 157 (220)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.++.++|+.|.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 34568999999999999999999999999999 888888777 79999999999999999999998888899988887
Q ss_pred eccCC
Q 027706 158 SATPL 162 (220)
Q Consensus 158 ~a~~~ 162 (220)
.+.+.
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 66543
No 147
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=4.8e-18 Score=118.46 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccC-cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G-~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....+|||+|||+++++++|+++|++|| .|..+.|+.+ .++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3468999999999999999999999999 8999988643 378999999999999999997665 89999999999
Q ss_pred ccCCC
Q 027706 159 ATPLD 163 (220)
Q Consensus 159 a~~~~ 163 (220)
+..+.
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97543
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=115.00 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..++ .|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999987666 3568899999999999999999998666 8999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99876543
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=120.88 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCc---EEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVA 155 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~---i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~ 155 (220)
......+|||+|||+++++++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|++||. +.+.|.|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3456789999999999999999999999998 89999999977 9999999999999999999997 33388999999
Q ss_pred EEeccCCC
Q 027706 156 IDSATPLD 163 (220)
Q Consensus 156 v~~a~~~~ 163 (220)
|.++.+++
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987653
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=111.74 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
.....+|||+|||+++++++|+++|+.||.|..| +.++.++. ||||+|.+.++|++||. ++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 55666665 99999999999999998 55 89999999999
Q ss_pred ccCCCCCC
Q 027706 159 ATPLDDAG 166 (220)
Q Consensus 159 a~~~~~~~ 166 (220)
+.++....
T Consensus 79 a~~~~~~~ 86 (94)
T 2e5g_A 79 REQKEFQS 86 (94)
T ss_dssp SCCSCCCC
T ss_pred CCcCCCCC
Confidence 87665543
No 151
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=113.92 Aligned_cols=79 Identities=19% Similarity=0.404 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|+..++ .|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999996 666543 578999999999999999997544 89999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
+.++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988654
No 152
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=110.97 Aligned_cols=77 Identities=27% Similarity=0.455 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++|+..+ ..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999964 39999999999999999754 489999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9877544
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=2.4e-17 Score=114.88 Aligned_cols=77 Identities=26% Similarity=0.523 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~-~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 157 (220)
....++|||+|||++ +++++|+++|++||.|..|.| ++|||||+|.+.++|++|+..+ ..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999988 5789999999999999999754 48999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 96 ~a~~~~~~ 103 (110)
T 1wf1_A 96 MAGEPKPD 103 (110)
T ss_dssp ESCCCCSC
T ss_pred ECCCCCCC
Confidence 99865443
No 154
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=112.39 Aligned_cols=70 Identities=21% Similarity=0.430 Sum_probs=63.5
Q ss_pred CEEEEcCCCCCC------CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCe-EEE
Q 027706 85 KKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QVA 155 (220)
Q Consensus 85 ~~l~v~nlp~~~------~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~-~i~ 155 (220)
++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|++|+..++ .+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 4688999999999999999999998655 88898 776
Q ss_pred E
Q 027706 156 I 156 (220)
Q Consensus 156 v 156 (220)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 5
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=109.04 Aligned_cols=75 Identities=24% Similarity=0.428 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC---CccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~---~~i~g~~i~v 156 (220)
.....++|||+|||+++++++|+++|++||.|..|.++. ++|||||+|.+.++|++|+..+ ..+.|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 455678999999999999999999999999999999986 4789999999999999999855 3899999999
Q ss_pred Eecc
Q 027706 157 DSAT 160 (220)
Q Consensus 157 ~~a~ 160 (220)
.+|+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.5e-17 Score=129.27 Aligned_cols=83 Identities=25% Similarity=0.293 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~ 158 (220)
..+.++|||+|||+++++++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|.+||..++ .+.|+.|.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4466899999999999999999999999999999999999999999999999999999999997544 88999999999
Q ss_pred ccCCC
Q 027706 159 ATPLD 163 (220)
Q Consensus 159 a~~~~ 163 (220)
+.+..
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87543
No 157
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.1e-17 Score=116.34 Aligned_cols=78 Identities=21% Similarity=0.398 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|++|+.. ...+.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45677999999999999999999999999999999987 68999999999999999974 448999999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99876543
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=122.47 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcE----EEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAI 156 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i----~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v 156 (220)
....+|||+|||+++++++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|++||+. .+.|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999975 68999998 5899999999999999999999975 33899999999
Q ss_pred EeccCC
Q 027706 157 DSATPL 162 (220)
Q Consensus 157 ~~a~~~ 162 (220)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=8.9e-18 Score=118.12 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=62.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeE-----
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ----- 153 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~----- 153 (220)
....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.++ .|.|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 345689999999999999999999999999999999875 799999999999999998555 889988
Q ss_pred EEEEeccCC
Q 027706 154 VAIDSATPL 162 (220)
Q Consensus 154 i~v~~a~~~ 162 (220)
|+|..+.++
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 777776654
No 160
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=7.6e-18 Score=114.69 Aligned_cols=81 Identities=30% Similarity=0.491 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQV 154 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~----~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i 154 (220)
..+.++|||+|||+++++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|+.. ...+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 567889999999999999999974 448999999
Q ss_pred EEEeccCCCC
Q 027706 155 AIDSATPLDD 164 (220)
Q Consensus 155 ~v~~a~~~~~ 164 (220)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 161
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-16 Score=108.38 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||..++ .|.|++|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999984 368899999999999999997655 8999999999
Q ss_pred eccCCCCCCC
Q 027706 158 SATPLDDAGP 167 (220)
Q Consensus 158 ~a~~~~~~~~ 167 (220)
++.++....+
T Consensus 83 ~a~~~~~~~~ 92 (97)
T 1x5p_A 83 IARKQPMLDS 92 (97)
T ss_dssp CCSSCCCCCS
T ss_pred ECCCCCCCCC
Confidence 9988765443
No 162
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-17 Score=114.83 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|+.||.|.+|.+.. ++|||||+|.+.++|++|+..+ ..+.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999873 6789999999999999999754 489999999999
Q ss_pred ccCC
Q 027706 159 ATPL 162 (220)
Q Consensus 159 a~~~ 162 (220)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9864
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=111.77 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEE-EeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~ 157 (220)
....++|||+|||+++++++|+++|+.||.|..| .|+.++.++ .|||+|.+.++|.+|+..+ ..|.|++|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 588876554 3999999999999999744 48999999999
Q ss_pred eccCCCC
Q 027706 158 SATPLDD 164 (220)
Q Consensus 158 ~a~~~~~ 164 (220)
++.+++.
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9998743
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=124.52 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999998555 8999999999
Q ss_pred eccCCC
Q 027706 158 SATPLD 163 (220)
Q Consensus 158 ~a~~~~ 163 (220)
+|.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997643
No 165
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=111.89 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCc-EEEEEeecCCCCCCccceEEEEECCHHHHHHHHh--cC-CccCCeEEEE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RS-HEICGQQVAI 156 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~-i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~--~~-~~i~g~~i~v 156 (220)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++ +. ..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 445689999999999999999999999999 5555552 57899999999999999996 44 5799999999
Q ss_pred EeccCCCCCC
Q 027706 157 DSATPLDDAG 166 (220)
Q Consensus 157 ~~a~~~~~~~ 166 (220)
.++.++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9998875543
No 166
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.2e-17 Score=113.68 Aligned_cols=77 Identities=22% Similarity=0.469 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 81 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 81 ~~~~~~l~v~nlp~-~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
..+.++|||+|||+ .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..++ .+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999984 6799999999999999997544 8899999999
Q ss_pred eccCCCCC
Q 027706 158 SATPLDDA 165 (220)
Q Consensus 158 ~a~~~~~~ 165 (220)
++.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 167
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=5.5e-17 Score=110.58 Aligned_cols=75 Identities=23% Similarity=0.537 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~-~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
.....++|||+|||+ ++++++|+++|+.||.|..|.| ++|||||+|.+.++|.+|+..++ .+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345679999999998 9999999999999999999998 36899999999999999997554 889999999
Q ss_pred EeccCC
Q 027706 157 DSATPL 162 (220)
Q Consensus 157 ~~a~~~ 162 (220)
.++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999765
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=3.4e-17 Score=114.98 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
....++|||+|||+++++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|+..+ ..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999876 446899999999999999999754 489999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
+.++..
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986543
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1.9e-17 Score=123.31 Aligned_cols=81 Identities=33% Similarity=0.653 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEEEeccCC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 162 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v~~a~~~ 162 (220)
++++|||+|||+++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|+.+++.+.|+.|.|.++.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 35899999999999999999999999999999999999999999999999999999999999888999999999998764
Q ss_pred C
Q 027706 163 D 163 (220)
Q Consensus 163 ~ 163 (220)
.
T Consensus 82 ~ 82 (167)
T 2cjk_A 82 D 82 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=6.2e-17 Score=123.56 Aligned_cols=85 Identities=34% Similarity=0.556 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+||.. .+.+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 345678999999999999999999999999999999999999999999999999999999999974 4489999999999
Q ss_pred ccCCCC
Q 027706 159 ATPLDD 164 (220)
Q Consensus 159 a~~~~~ 164 (220)
+.++..
T Consensus 89 ~~~~~~ 94 (196)
T 1l3k_A 89 AVSRED 94 (196)
T ss_dssp CCC---
T ss_pred ccCccc
Confidence 987644
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=8.2e-17 Score=119.58 Aligned_cols=81 Identities=22% Similarity=0.410 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccC
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATP 161 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~ 161 (220)
.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ...+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999974 4489999999999987
Q ss_pred CCC
Q 027706 162 LDD 164 (220)
Q Consensus 162 ~~~ 164 (220)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=112.28 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCCCCEEEE--cCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc-----CC
Q 027706 81 QRIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-----CG 151 (220)
Q Consensus 81 ~~~~~~l~v--~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i-----~g 151 (220)
..++.+||| +||++++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|+..++ +| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445689999 77999999999999999999999998864 36899999999999999998665 66 68
Q ss_pred eEEEEEeccCCCCCCC
Q 027706 152 QQVAIDSATPLDDAGP 167 (220)
Q Consensus 152 ~~i~v~~a~~~~~~~~ 167 (220)
++|.|.++...+...+
T Consensus 96 ~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EECEEEEESCCCCSSC
T ss_pred cEEEEEecccCcccCC
Confidence 8999999986655544
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=6.5e-17 Score=120.41 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~ 160 (220)
+.++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+.. ...+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 358999999999999999999999999999999999988999999999999999999999974 448999999999998
Q ss_pred CCCCC
Q 027706 161 PLDDA 165 (220)
Q Consensus 161 ~~~~~ 165 (220)
++...
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 174
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5e-17 Score=113.52 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a 159 (220)
...++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|++|+..++ .|.|++|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999999864 57899999999999999997554 899999999999
Q ss_pred cCCC
Q 027706 160 TPLD 163 (220)
Q Consensus 160 ~~~~ 163 (220)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.8e-17 Score=114.84 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=67.0
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECC----HHH----HHHHHh--c--CCc
Q 027706 85 KKIFVGRL----PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE----EVV----ADRVSR--R--SHE 148 (220)
Q Consensus 85 ~~l~v~nl----p~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~----~~~----a~~al~--~--~~~ 148 (220)
.+|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||.++|||||+|.+ .++ |.+|+. . +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 322 777876 3 348
Q ss_pred cCCeEEEEEecc
Q 027706 149 ICGQQVAIDSAT 160 (220)
Q Consensus 149 i~g~~i~v~~a~ 160 (220)
|.|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 176
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=122.12 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEE--eecC---CCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY--VPKD---PKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ 153 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~--i~~d---~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~ 153 (220)
..+.++|||+|||+++++++|+++|+.||.|..+. ++.+ ..++.++|||||+|.+.++|.+||..++ .|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44668999999999999999999999999887641 1111 2468899999999999999999997555 899999
Q ss_pred EEEEeccCCCCC
Q 027706 154 VAIDSATPLDDA 165 (220)
Q Consensus 154 i~v~~a~~~~~~ 165 (220)
|.|.+|.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876544
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=2e-16 Score=116.87 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCC--eEEEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAID 157 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~i~v~ 157 (220)
....+|||+||++.+++++|+++|++||.|.+|.|..+. ++|||||+|.+.++|++|++.++ .|.+ +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345789999999999999999999999999999987542 57899999999999999998766 7865 999999
Q ss_pred eccCCC
Q 027706 158 SATPLD 163 (220)
Q Consensus 158 ~a~~~~ 163 (220)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999874
No 178
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.6e-16 Score=106.26 Aligned_cols=73 Identities=18% Similarity=0.305 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
..++|||+|||+++++++|+++|++| .|..+.|. +++|||||+|.+.++|++|+..++ .+.|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 478999999999999999998655 8999999999986
Q ss_pred CC
Q 027706 161 PL 162 (220)
Q Consensus 161 ~~ 162 (220)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=103.73 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=63.0
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHHhcc-CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEE
Q 027706 83 IGKK-IFVGRLPQEATAED----LRRYFSRF-GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 154 (220)
Q Consensus 83 ~~~~-l~v~nlp~~~~~~~----l~~~F~~~-G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i 154 (220)
++.+ |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|.+|+++++ .+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4556 99999999999987 66899999 499888 23 899999999999999997655 9999999
Q ss_pred EEEeccCCCCC
Q 027706 155 AIDSATPLDDA 165 (220)
Q Consensus 155 ~v~~a~~~~~~ 165 (220)
+|.+|+.+.+.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999877553
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=4e-16 Score=111.15 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccce-EEEEECCHHHHHHHHhcCC--ccCC--eEEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRSH--EICG--QQVAI 156 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~-afV~f~~~~~a~~al~~~~--~i~g--~~i~v 156 (220)
.....|||+||++.+++++|+++|++||.|.+|.|+.+ .+|| |||+|.+.++|++|++.++ .|.| ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34567889999999999999999999999999988764 3678 9999999999999997555 8877 89999
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
.+++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=6.4e-16 Score=118.24 Aligned_cols=79 Identities=15% Similarity=0.331 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC-CccCCeEEEEEeccC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATP 161 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~-~~i~g~~i~v~~a~~ 161 (220)
..++|||+|||+++++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|.+|+... +.+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999985 5889999999999999999999754 489999999999765
Q ss_pred C
Q 027706 162 L 162 (220)
Q Consensus 162 ~ 162 (220)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=5.7e-16 Score=119.94 Aligned_cols=82 Identities=21% Similarity=0.411 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEec
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 159 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a 159 (220)
...++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..+ ..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35689999999999999999999999999999999999889999999999999999999999744 4899999999987
Q ss_pred cCCC
Q 027706 160 TPLD 163 (220)
Q Consensus 160 ~~~~ 163 (220)
.+..
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 6553
No 183
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=3.3e-15 Score=105.84 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccce-EEEEECCHHHHHHHHhcCC--ccCC--eEEEEEe
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRSH--EICG--QQVAIDS 158 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~-afV~f~~~~~a~~al~~~~--~i~g--~~i~v~~ 158 (220)
...|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|..|++.++ .|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 276 9999999999999998555 8877 6999999
Q ss_pred ccCCC
Q 027706 159 ATPLD 163 (220)
Q Consensus 159 a~~~~ 163 (220)
|+++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98775
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.9e-16 Score=113.56 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=71.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEeccCC
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSATPL 162 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~~~ 162 (220)
++|||+|||+++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|.+|+.. ...+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999986 477999999999999999999964 44899999999999776
Q ss_pred CC
Q 027706 163 DD 164 (220)
Q Consensus 163 ~~ 164 (220)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 185
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=1e-15 Score=101.81 Aligned_cols=70 Identities=23% Similarity=0.448 Sum_probs=63.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcc----C-------cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--c
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 148 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~----G-------~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~ 148 (220)
...++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+ .++ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999998754 789999999999999999 555 8
Q ss_pred cCCeEEEEEe
Q 027706 149 ICGQQVAIDS 158 (220)
Q Consensus 149 i~g~~i~v~~ 158 (220)
+.|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=1.1e-15 Score=117.98 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=68.4
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEec
Q 027706 83 IGKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 159 (220)
Q Consensus 83 ~~~~l~v~nlp-~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~a 159 (220)
++++|||+||| +.+++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++||+.+ ..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45899999999 89999999999999999999999876 4799999999999999999754 4899999999998
Q ss_pred cCCC
Q 027706 160 TPLD 163 (220)
Q Consensus 160 ~~~~ 163 (220)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.2e-15 Score=108.14 Aligned_cols=77 Identities=26% Similarity=0.343 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC--CccCCeEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~i~v~~ 158 (220)
....++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999886 36889999999999999999754 489999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9877544
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=3.3e-15 Score=103.10 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHHhccCcEEEEEeecCCCC-CCccceEEEEECCHHHHHHHHhcCC--ccCCe
Q 027706 81 QRIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRRSH--EICGQ 152 (220)
Q Consensus 81 ~~~~~~l~v~nlp~-----~~~~~~l~~~F~~~G~i~~~~i~~d~~t-g~~~g~afV~f~~~~~a~~al~~~~--~i~g~ 152 (220)
..++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ +.++||+||+|.+.++|.+|+..++ .+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 2378999999999999999999998654 6789999999999999999997555 89999
Q ss_pred EEEEEeccC
Q 027706 153 QVAIDSATP 161 (220)
Q Consensus 153 ~i~v~~a~~ 161 (220)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.8e-15 Score=113.13 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCC--CccceEEEEECCHHHHHHHHhcCC--ccC---CeEEEE
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT--GHRGFGFVTFAEEVVADRVSRRSH--EIC---GQQVAI 156 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg--~~~g~afV~f~~~~~a~~al~~~~--~i~---g~~i~v 156 (220)
.++|||+|||+++++++|+++|++||.|.+|.|+.++.++ +++|||||+|.+.++|.+|+..++ .+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5799999999999999999999999999999999998876 899999999999999999997544 333 678888
Q ss_pred EeccCCCC
Q 027706 157 DSATPLDD 164 (220)
Q Consensus 157 ~~a~~~~~ 164 (220)
.++.+...
T Consensus 83 ~~~~~~~~ 90 (175)
T 3nmr_A 83 KPADSEKN 90 (175)
T ss_dssp EECGGGCC
T ss_pred cccccccc
Confidence 88776543
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-14 Score=98.27 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=66.5
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCCccCCeEEEE
Q 027706 84 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAI 156 (220)
Q Consensus 84 ~~~l~v~nlp-------~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~i~v 156 (220)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|+.|+..++.+.+++|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 4566665433 458999999999999999999997 3589999999999999999999888889999999
Q ss_pred EeccCCCCCCC
Q 027706 157 DSATPLDDAGP 167 (220)
Q Consensus 157 ~~a~~~~~~~~ 167 (220)
.|+.++.....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T 2d9o_A 85 SWLEGQPQDAS 95 (100)
T ss_dssp ECSSCCCCCCS
T ss_pred EEccCCCCCCC
Confidence 99987755433
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=6.4e-15 Score=118.84 Aligned_cols=81 Identities=27% Similarity=0.458 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ 153 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~----~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~ 153 (220)
...+.++|||+|||+++++++|+ ++|+.||.|.+|.|+. +++++|||||+|.+.++|.+||..++ .|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567999999999999999966 8999999999999876 67899999999999999999997555 889999
Q ss_pred EEEEeccCCC
Q 027706 154 VAIDSATPLD 163 (220)
Q Consensus 154 i~v~~a~~~~ 163 (220)
|.|.++.++.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=3.8e-15 Score=116.88 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc
Q 027706 81 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 149 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~---------~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 149 (220)
.....+|||+||+..+ ++++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|+..++ .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 47899999999999999997554 66
Q ss_pred ------------CCeEEEEEeccCCCC
Q 027706 150 ------------CGQQVAIDSATPLDD 164 (220)
Q Consensus 150 ------------~g~~i~v~~a~~~~~ 164 (220)
.|+.|.|.||.+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 799999999986543
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=1.1e-14 Score=114.32 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEE
Q 027706 80 SQRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAI 156 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~-~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v 156 (220)
.....++|||+|||+ ++++++|+++|+.||.|.+|.|+.++ +|||||+|.+.++|++|+.. ...+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998874 78999999999999999964 44899999999
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
.++.++.
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998664
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.8e-14 Score=98.42 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--
Q 027706 81 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 147 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~-----------~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~-- 147 (220)
..++++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|+..++
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999944332 5799999999999999966 443 279999999999999999997665
Q ss_pred ccCCeEEEEEeccCCCCCC
Q 027706 148 EICGQQVAIDSATPLDDAG 166 (220)
Q Consensus 148 ~i~g~~i~v~~a~~~~~~~ 166 (220)
.+.|++|.|.++.++....
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 8999999999998876543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2.5e-15 Score=112.70 Aligned_cols=85 Identities=16% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCeEEEEEe
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 158 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~i~v~~ 158 (220)
.....++|||+|||+++++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+||+ +...+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4556799999999999999999999999998765 344555678899999999999999999995 33389999999999
Q ss_pred ccCCCCC
Q 027706 159 ATPLDDA 165 (220)
Q Consensus 159 a~~~~~~ 165 (220)
+.++...
T Consensus 88 ~~~~~~~ 94 (175)
T 1fje_B 88 PKGRDSK 94 (175)
T ss_dssp CCCSSCS
T ss_pred CCCcccc
Confidence 9876543
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=109.90 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=68.7
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEEecc
Q 027706 84 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 160 (220)
Q Consensus 84 ~~~l~v~nlp~-~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~~a~ 160 (220)
.++|||+|||+ .+++++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998873 78999999999999999974 448999999999998
Q ss_pred CCCC
Q 027706 161 PLDD 164 (220)
Q Consensus 161 ~~~~ 164 (220)
++..
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 6643
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=9e-14 Score=111.11 Aligned_cols=76 Identities=29% Similarity=0.584 Sum_probs=68.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeEEEEE
Q 027706 80 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAID 157 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~i~v~ 157 (220)
.....++|||+|||+++|+++|+++|+.||.|..|.|.+ ++|||||+|.+.++|.+|+.. ...|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 445678999999999999999999999999999999965 468999999999999999974 448999999999
Q ss_pred eccC
Q 027706 158 SATP 161 (220)
Q Consensus 158 ~a~~ 161 (220)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.3e-13 Score=95.07 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHhccCcEEEEEeecCCCC--CCccceEEEEECCHHHHHHHHhcCC--c
Q 027706 83 IGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH--E 148 (220)
Q Consensus 83 ~~~~l~v~nl--p~~~~--------~~~l~~~F~~~G~i~~~~i~~d~~t--g~~~g~afV~f~~~~~a~~al~~~~--~ 148 (220)
+++.|.|.|+ |.++. +++|++.|++||.|.+|.|++++.+ +.++|++||+|.+.++|.+|+..+| .
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 33433 3689999999999999999998765 3679999999999999999997655 8
Q ss_pred cCCeEEEEEeccC
Q 027706 149 ICGQQVAIDSATP 161 (220)
Q Consensus 149 i~g~~i~v~~a~~ 161 (220)
+.|+.|.|.++.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=2.5e-13 Score=101.30 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcc----C-------cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 150 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~----G-------~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~ 150 (220)
+.++|||+|||+++++++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+|+. +...+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 45899999999999999999999999 6 777777754 47899999999999999993 333899
Q ss_pred CeEEEEEeccCCCC
Q 027706 151 GQQVAIDSATPLDD 164 (220)
Q Consensus 151 g~~i~v~~a~~~~~ 164 (220)
|++|.|.++.+...
T Consensus 77 g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP 90 (172)
T ss_dssp TEECEEECCSSCCC
T ss_pred CceeeecCCcccCC
Confidence 99999998775543
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=3.7e-13 Score=102.63 Aligned_cols=75 Identities=20% Similarity=0.409 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcc----C-------cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 149 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~----G-------~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 149 (220)
..++|||+|||+++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|| .++ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35899999999999999999999999 5 56666653 46899999999999999999 544 89
Q ss_pred CCeEEEEEeccCCCC
Q 027706 150 CGQQVAIDSATPLDD 164 (220)
Q Consensus 150 ~g~~i~v~~a~~~~~ 164 (220)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999876643
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=3.2e-14 Score=97.99 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEE
Q 027706 89 VGRLPQEATAEDLRRYF------------SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 154 (220)
Q Consensus 89 v~nlp~~~~~~~l~~~F------------~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i 154 (220)
+.+|++.+++++|+++| ++||.|.+|.|+.+.. ++++|||||+|.+.++|.+|+..++ .+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999998854 7899999999999999999997554 8999999
Q ss_pred EEEec
Q 027706 155 AIDSA 159 (220)
Q Consensus 155 ~v~~a 159 (220)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=4e-13 Score=94.41 Aligned_cols=79 Identities=10% Similarity=0.147 Sum_probs=67.0
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHHhccCcEEEEEeecCCC----CCCccceEEEEECCHHHHHHHHhcCC--ccCC
Q 027706 83 IGKKIFVGRLP--QEA---TAEDLRRYFSRFGRILDVYVPKDPK----RTGHRGFGFVTFAEEVVADRVSRRSH--EICG 151 (220)
Q Consensus 83 ~~~~l~v~nlp--~~~---~~~~l~~~F~~~G~i~~~~i~~d~~----tg~~~g~afV~f~~~~~a~~al~~~~--~i~g 151 (220)
++++|+|.|+- .++ .+++|++.|++||.|.+|.|+.++. ++.++|++||+|.+.++|.+|+..++ .+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56899999983 222 3689999999999999999998864 45678999999999999999998655 8999
Q ss_pred eEEEEEeccC
Q 027706 152 QQVAIDSATP 161 (220)
Q Consensus 152 ~~i~v~~a~~ 161 (220)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1.7e-12 Score=107.03 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=62.6
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc---CCe
Q 027706 80 SQRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQ 152 (220)
Q Consensus 80 ~~~~~~~l~v~n--lp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i---~g~ 152 (220)
...++.+|||+| |++.+++++|+++|++||.|.+|.++. .||||||+|.+.++|++|++.++ ++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456778999999 578999999999999999999988754 47899999999999999998766 33 355
Q ss_pred --EEEEEecc
Q 027706 153 --QVAIDSAT 160 (220)
Q Consensus 153 --~i~v~~a~ 160 (220)
+|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777774
No 204
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.37 E-value=2.5e-14 Score=100.36 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 81 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
++|+ +.+||||||+|.+.++|++||+.|++..+.++.|.|.++..+....... ....
T Consensus 38 ~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~---------------------~~~~ 94 (115)
T 4f25_A 38 VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL---------------------GARA 94 (115)
T ss_dssp EEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC------------------------------
T ss_pred eecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccccc---------------------cccc
Confidence 4554 4589999999999999999999999999999999987764332211100 0022
Q ss_pred CCCCEEEEcCCCCCCCHHH
Q 027706 82 RIGKKIFVGRLPQEATAED 100 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~ 100 (220)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3446799999999999863
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=3.7e-11 Score=83.80 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=62.1
Q ss_pred CCCCEEEEcCCCCCC----------CHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--cc
Q 027706 82 RIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 149 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~----------~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 149 (220)
.+++.|.+.|+=... .+++|++.|++||.|.+|.|.++. .+|++||+|.+.++|.+|+..++ .+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456788888873221 235889999999999999997763 58999999999999999997555 89
Q ss_pred CCeEEEEEecc
Q 027706 150 CGQQVAIDSAT 160 (220)
Q Consensus 150 ~g~~i~v~~a~ 160 (220)
.|+.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999985
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=8.6e-11 Score=82.26 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECC-HHHHHHHHhcCC----ccCCeE
Q 027706 80 SQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSRRSH----EICGQQ 153 (220)
Q Consensus 80 ~~~~~~~l~v~nlp~~-~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~-~~~a~~al~~~~----~i~g~~ 153 (220)
....++.|+|+||++. +++++|+++|+.||.|..|.+..+.. .|||.|.+ .++|..|+..++ .|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 5667899999999999 99999999999999999999988855 59999999 889999987653 788988
Q ss_pred EEEEecc
Q 027706 154 VAIDSAT 160 (220)
Q Consensus 154 i~v~~a~ 160 (220)
++++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887654
No 207
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.20 E-value=3e-12 Score=85.86 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=43.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCC-CCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDD-FRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~-~~~~~r~i~v~~~~~~ 49 (220)
|++|+.||++||||||+|.+.++|++||+.+++ ..+.++.|.|.++.++
T Consensus 34 i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 34 LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence 689999999999999999999999999987754 4589999999887543
No 208
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.17 E-value=4.7e-12 Score=87.94 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=47.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 53 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~ 53 (220)
|++|+.|++|||||||+|.+.++|++||+.||+..+.++.|.|.++.......
T Consensus 38 i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~ 90 (110)
T 3s8s_A 38 ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRM 90 (110)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHH
T ss_pred EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHH
Confidence 46899999999999999999999999999999999999999999886554433
No 209
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.17 E-value=2.7e-12 Score=86.75 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCC----cccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFR----PVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~----~~~r~i~v~~~~ 47 (220)
|++|+.||+|||||||+|.+.++|++||+.|++.. +.+|.|.|.||.
T Consensus 43 i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 43 LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 68999999999999999999999999999988863 789999887763
No 210
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.16 E-value=2.9e-12 Score=87.30 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 51 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46899999999999999999999999999999999999999988774
No 211
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.13 E-value=5.8e-12 Score=84.15 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.||++||||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 35 i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 35 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 467899999999999999999999999999999999999999877643
No 212
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.7e-10 Score=74.37 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=60.2
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCCe
Q 027706 82 RIGKKIFVGRLPQ----EATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQ 152 (220)
Q Consensus 82 ~~~~~l~v~nlp~----~~~~----~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~ 152 (220)
.+..||+|..++. ++-. .+|.+.|++||.|..++|+.| .+||+|.+.++|.+|+. ++..++|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHhcCCeEeCCe
Confidence 4567888887762 3333 578999999999999999887 38999999999999997 33499999
Q ss_pred EEEEEeccCC
Q 027706 153 QVAIDSATPL 162 (220)
Q Consensus 153 ~i~v~~a~~~ 162 (220)
.|+|+++.|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999864
No 213
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.11 E-value=7.9e-12 Score=85.24 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCccc-ccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVG-RMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~-r~i~v~~~~~ 48 (220)
|++|+.||++||||||+|.+.++|++||+.|++..+.+ +.|.|.++..
T Consensus 44 i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 44 FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 68899999999999999999999999999999999998 9999887744
No 214
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.04 E-value=1.5e-10 Score=74.34 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=40.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.|++++|||||+|.+.++|++||+ +++..+.++.|.|.+|
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 31 LMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 57889999999999999999999999997 8999999999987543
No 215
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=6.8e-11 Score=79.70 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 38 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 38 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 478889999999999999999999999999999999999999877743
No 216
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.03 E-value=2.8e-10 Score=78.38 Aligned_cols=51 Identities=14% Similarity=0.002 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 53 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~ 53 (220)
|++|+. |+++|||||+|.+.++|++||+ +++..+.++.|.|.++..+....
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~~ 96 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVDA 96 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHHH
Confidence 578888 9999999999999999999998 99989999999998886655433
No 217
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.4e-10 Score=79.56 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 47 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp CCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred EEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 578899999999999999999999999999999999999999877643
No 218
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.99 E-value=1.2e-10 Score=78.62 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=48.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISA 54 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~ 54 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++..+.....
T Consensus 34 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 87 (96)
T 2x1f_A 34 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISGV 87 (96)
T ss_dssp CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGGGH
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCCCc
Confidence 578899999999999999999999999999999999999999998876655443
No 219
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.99 E-value=4.3e-11 Score=78.42 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 4578899999999999999999999999999999999999998877543
No 220
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.1e-11 Score=78.90 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 37 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46788999999999999999999999999999999999999987764
No 221
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.98 E-value=3.8e-11 Score=79.43 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 457888999999999999999999999999999999999999877654
No 222
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.6e-10 Score=78.33 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=42.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+ |++..+.++.|.|.++..
T Consensus 42 i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 42 MIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp ECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred EEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 57899999999999999999999999998 999999999999877643
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.98 E-value=2.9e-10 Score=77.33 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=42.8
Q ss_pred CCCCC-CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQ-GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~-~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+ .||+++|||||+|.+.++|++|| .|++..+.++.|.|.++..
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 57788 69999999999999999999999 8999999999999887754
No 224
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=4.5e-10 Score=77.46 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=42.4
Q ss_pred CCCCCCCcccEEEEEecCHHHHHhhCCCCC--CCCcccccCCCCCCCcc
Q 027706 3 KDQGSKAHRGIGFITFASAVVVDRATPKED--DFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 3 rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~--~~~~~~r~i~v~~~~~~ 49 (220)
+|+.||+++|||||+|.+.++|++||+.|+ +..+.++.|.|.++..+
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence 789999999999999999999999999996 57899999999887544
No 225
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=1.2e-10 Score=78.93 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 40 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 40 YPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp CCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5789999999999999999999999999999999999999998877543
No 226
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.97 E-value=8.1e-11 Score=79.89 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 4578899999999999999999999999999999999999988665
No 227
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.3e-10 Score=80.86 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=44.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 55 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 55 IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 578899999999999999999999999999999999999999887744
No 228
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.97 E-value=2.4e-10 Score=76.02 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.||+++|||||+|.+.+ |++|+..|++..+.++.|.|.++..
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 33 LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4789999999999999999999 9999999999999999999887743
No 229
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-10 Score=83.20 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCC----CcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDF----RPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~----~~~~r~i~v~~~~~ 48 (220)
|++|+.||++||||||+|.+. +|++||..|++. .+.++.|.|.++..
T Consensus 57 i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 57 VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 689999999999999999999 999999999999 89999999987754
No 230
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-10 Score=78.59 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCccccc----CCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM----SHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~----i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++. |.|.++.
T Consensus 42 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 42 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 4678999999999999999999999999999999999999 8877663
No 231
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=5.4e-11 Score=81.14 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 44 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 467889999999999999999999999999999999999999887754
No 232
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=1.3e-10 Score=79.41 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++|| .|++..+.++.|.|.++..
T Consensus 46 i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 46 LVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 4678999999999999999999999999 8999999999999877643
No 233
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.1e-10 Score=79.68 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=43.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 45 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 45 IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 57899999999999999999999999999999999999999987764
No 234
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.95 E-value=2.4e-10 Score=78.45 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=43.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCc---ccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRP---VGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~---~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+ .++.|.|.++..
T Consensus 45 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 45 VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 678999999999999999999999999999999886 889998877643
No 235
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.3e-10 Score=79.27 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=43.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 44 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 47889999999999999999999999999999999999999987764
No 236
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.95 E-value=8.2e-11 Score=86.70 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=46.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
|++|+.||++||||||+|.+.++|++||+.|++..+.++.|.|.++..+..
T Consensus 89 i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 139 (156)
T 3n9u_C 89 FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNL 139 (156)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCcc
Confidence 468999999999999999999999999999999999999999998866544
No 237
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.95 E-value=1.1e-10 Score=79.40 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=42.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+++|+.||+++|||||+|.+.++|++||+ |++..+.++.|.|.++..
T Consensus 48 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 48 AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 57788899999999999999999999998 999999999999887743
No 238
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=4.4e-11 Score=81.51 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=36.5
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 7999999999999999999999999999999998877543
No 239
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.9e-10 Score=77.71 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCC-cccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFR-PVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~-~~~r~i~v~~~~~ 48 (220)
|++|+ ||+++|||||+|.+.++|++||+.|++.. +.++.|.|.++..
T Consensus 42 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 42 VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 46788 99999999999999999999999999999 9999999987744
No 240
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.5e-10 Score=79.14 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=48.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA 55 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~ 55 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++.........
T Consensus 40 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 94 (104)
T 1p1t_A 40 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEEL 94 (104)
T ss_dssp EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHHH
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchhhh
Confidence 3567889999999999999999999999999999999999999988766555443
No 241
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.2e-10 Score=79.68 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 467889999999999999999999999999999999999999877743
No 242
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.2e-10 Score=79.99 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=43.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 457889999999999999999999999999999999999999887744
No 243
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.94 E-value=2.4e-10 Score=81.52 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 78 i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 78 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 467899999999999999999999999999999999999999988754
No 244
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1e-10 Score=79.72 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 44 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 44 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 578999999999999999999999999999999999999999877643
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.8e-10 Score=77.86 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCCCCCC-CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGS-KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~t-g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.| ++++|||||+|.+.++|++|| .|++..+.++.|.|.++..
T Consensus 46 i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 46 LPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred EecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 5788988 999999999999999999999 9999999999999887743
No 246
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.92 E-value=1.1e-10 Score=76.76 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=42.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5788899999999999999999999999999999999999987655
No 247
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.92 E-value=1e-09 Score=71.51 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccc-cCCC
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGR-MSHG 43 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r-~i~v 43 (220)
+.||+++|||||+|.+.++|++||+.|++..+.++ .|.|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 47899999999999999999999999999999999 8875
No 248
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.92 E-value=1.5e-10 Score=80.01 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=44.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 58 i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 58 LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 4578889999999999999999999999999999999999998877543
No 249
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.91 E-value=2e-10 Score=80.04 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=44.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 47 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 4678889999999999999999999999999999999999999887544
No 250
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.91 E-value=4.5e-10 Score=80.73 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 578899999999999999999999999999999999999999877643
No 251
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.5e-10 Score=77.71 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=42.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4788999999999999999999999999999999999999987665
No 252
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=2.6e-10 Score=78.89 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCC------CCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKED------DFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~------~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|+ +..+.++.|.|.++..
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 47 VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 67899999999999999999999999999998 8889999999887744
No 253
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.91 E-value=3.4e-10 Score=88.57 Aligned_cols=51 Identities=6% Similarity=-0.022 Sum_probs=46.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
|++|+.||++||||||+|.+.++|++||+.|++..+.++.|.|.++.....
T Consensus 102 i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 152 (229)
T 3q2s_C 102 FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFL 152 (229)
T ss_dssp EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHHH
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCcc
Confidence 568999999999999999999999999999999999999999988865443
No 254
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.91 E-value=1.4e-10 Score=80.83 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 57 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 467888999999999999999999999999999999999999887743
No 255
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.91 E-value=2.2e-10 Score=79.17 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.||+++|||||+|.+.++|++||..|++..+.++.|.|.++..
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 578999999999999999999999999999999999999999887743
No 256
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=3e-10 Score=77.65 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=38.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+ ||++||||||+|.++++|++|| .+++..+.++.|.|..+
T Consensus 46 i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 46 IEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp EEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 46787 8999999999999999999999 57888899999987544
No 257
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=4.5e-10 Score=77.13 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=43.5
Q ss_pred CCCC-CCCCCcccEEEEEecCHHHHHhhCCCC-CCCCcccccCCCCCCCc
Q 027706 1 MPKD-QGSKAHRGIGFITFASAVVVDRATPKE-DDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD-~~tg~srG~aFV~F~~~~~A~~Ai~~~-~~~~~~~r~i~v~~~~~ 48 (220)
|++| +.+++++|||||+|.+.++|++||+.| ++..+.++.|.|.++..
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 5677 789999999999999999999999999 89999999999887744
No 258
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.5e-10 Score=80.75 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=45.8
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhh
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISA 54 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~ 54 (220)
+.|..||+++|||||+|.+.++|++||+ |++..+.++.|.|.++..+.....
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~~ 109 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGMLEK 109 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHHHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHHHHH
Confidence 4567799999999999999999999998 999999999999998877665443
No 259
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.90 E-value=7.6e-10 Score=70.95 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGY 45 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~ 45 (220)
|++|+.|++++|||||+|.++++|++||+. ++..+.++.|.|.+
T Consensus 31 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 31 LPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred EEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 578999999999999999999999999975 77789999887653
No 260
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=1.5e-10 Score=78.29 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=42.1
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5678899999999999999999999999999999999999987663
No 261
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=2.6e-10 Score=73.50 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=40.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.||+++|||||+|.+.++|++||+.++ ..+.++.|.|.++
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 46788999999999999999999999999998 8899999887543
No 262
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.90 E-value=3.4e-10 Score=80.21 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=45.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 5789999999999999999999999999999999999999999887543
No 263
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=1.7e-10 Score=80.65 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=44.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 47 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 4678899999999999999999999999999999999999999887543
No 264
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=9.7e-10 Score=75.27 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=39.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++| .||+++|||||+|.++++|++||+. ++..+.++.|.|.++.
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 5677 7899999999999999999999987 8888999999876553
No 265
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=6e-10 Score=77.75 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=42.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++||+.+++ .+.++.|.|.++.
T Consensus 49 i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 49 VITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 578999999999999999999999999999998 7999999987764
No 266
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.87 E-value=3.8e-10 Score=74.80 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=41.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++|| .|++..+.++.|.|.++.
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4578889999999999999999999999 999999999999887653
No 267
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.7e-10 Score=74.97 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.+++.+.
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4678899999999999999999999999999999999999886543
No 268
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.87 E-value=4.7e-10 Score=78.47 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=42.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+ ||+++|||||+|.+.++|++||+.|++..+.++.|.|.++...
T Consensus 39 i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 39 LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 35677 8999999999999999999999999999999999999877543
No 269
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.8e-10 Score=77.43 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 45788999999999999999999999999999999999999887663
No 270
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.87 E-value=3.7e-10 Score=79.07 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++
T Consensus 72 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 72 VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4788999999999999999999999999999999999999988654
No 271
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.87 E-value=1.9e-10 Score=77.27 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=41.4
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
++|+.+++++|||||+|.++++|++||+.|++..+.++.|.|.++
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 48 LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 567889999999999999999999999999999999999988765
No 272
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.87 E-value=4.3e-10 Score=78.93 Aligned_cols=50 Identities=14% Similarity=-0.043 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 52 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~ 52 (220)
|++|+. |+++|||||+|.+.++|++||+ +++..+.++.|.|.++..+...
T Consensus 52 i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~ 101 (118)
T 2db1_A 52 FIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMD 101 (118)
T ss_dssp EEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHH
Confidence 356777 9999999999999999999998 9998899999999887655443
No 273
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.9e-09 Score=70.49 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=60.0
Q ss_pred CCCCCEEEEcCCCCC-----CCH----HHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccC
Q 027706 81 QRIGKKIFVGRLPQE-----ATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 150 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~-----~~~----~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~ 150 (220)
-.+..||+|..++.. +-. .+|.+.|+.||.|..++|+.|+ +||+|.+.++|.+||. ++.+++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 456789999888643 222 4688999999999999999883 9999999999999997 444999
Q ss_pred CeEEEEEeccC
Q 027706 151 GQQVAIDSATP 161 (220)
Q Consensus 151 g~~i~v~~a~~ 161 (220)
|+.|+|++..|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998653
No 274
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=5.3e-10 Score=78.98 Aligned_cols=55 Identities=15% Similarity=-0.026 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATR 57 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r 57 (220)
|++| .||+++|||||+|.+.++|++||+. ++..+.+|.|.|..+..+.......+
T Consensus 59 i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~~~~ 113 (123)
T 2dha_A 59 FVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQVLNR 113 (123)
T ss_dssp EEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHHHHH
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHHHHh
Confidence 3567 4899999999999999999999976 88889999999987766555444433
No 275
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=5.8e-10 Score=77.71 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=44.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhh
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 53 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~ 53 (220)
|++|+ ||+++|||||+|.+.++|++||+. ++..+.++.|.|.++..+....
T Consensus 48 i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~ 98 (114)
T 2cpy_A 48 VLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMRE 98 (114)
T ss_dssp ECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHH
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHH
Confidence 57888 999999999999999999999976 8888999999998886655433
No 276
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.85 E-value=2.4e-10 Score=78.54 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=42.5
Q ss_pred CCCCCCC-CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGS-KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~t-g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.+ ++++|||||+|.+.++|++|++.||+..+.+|.|.+.++..
T Consensus 45 i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 45 IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 3567654 79999999999999999999999999999999999988754
No 277
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.85 E-value=1.3e-09 Score=77.25 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+. |++||||||+|.++++|++||+. ++..+.+|.|.|..+.
T Consensus 75 i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 75 LPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 678888 99999999999999999999975 6677999999987654
No 278
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.84 E-value=5.6e-10 Score=82.15 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=43.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.||+++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 102 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 102 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 67899999999999999999999999999999999999999987764
No 279
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=2.8e-10 Score=75.92 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=40.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++| .+|+++|||||+|.+.++|++||+ |++..+.++.|.|.++..
T Consensus 41 i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 41 IVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp EEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred EEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 3567 789999999999999999999999 999999999998876643
No 280
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.84 E-value=4e-10 Score=81.02 Aligned_cols=48 Identities=15% Similarity=-0.011 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNA 50 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~ 50 (220)
|++|+. |++||||||+|.+.++|++||+ +++..+.++.|.|.++..+.
T Consensus 79 i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 79 FIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp EEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 467887 9999999999999999999998 99999999999998775444
No 281
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.84 E-value=1.7e-09 Score=78.04 Aligned_cols=46 Identities=13% Similarity=-0.033 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+. |++||||||+|+++++|++|| .+++..+.++.|.|..+..
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 678887 999999999999999999999 7899899999998866543
No 282
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=3e-10 Score=77.12 Aligned_cols=47 Identities=9% Similarity=0.202 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+ ||+++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 49 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 49 LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 35677 899999999999999999999999999999999999877643
No 283
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.1e-09 Score=75.02 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=39.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+. |++||||||+|.++++|++||. +++..+.++.|.|.++
T Consensus 43 i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 43 MRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp EECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred EEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 467887 9999999999999999999998 8888999999988644
No 284
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.83 E-value=5.7e-10 Score=76.39 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=41.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCccc---ccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVG---RMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~---r~i~v~~~~~ 48 (220)
|++|+ +++++|||||+|.+.++|++||+.|++..+.+ +.|.|.++..
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 47 VLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp EEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred EEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 35677 79999999999999999999999999998887 9999877743
No 285
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.82 E-value=4.8e-10 Score=78.12 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCE
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKK 86 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (220)
++.++|||||+|.+.++|++||+.|++..+.++.|.|.++......
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~---------------------------------- 88 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF---------------------------------- 88 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------------------------
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------------------------
Confidence 3567999999999999999999999999999999998776321100
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCc
Q 027706 87 IFVGRLPQEATAEDLRRYFSRFGR 110 (220)
Q Consensus 87 l~v~nlp~~~~~~~l~~~F~~~G~ 110 (220)
.+++...++++|+++|++||.
T Consensus 89 ---~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 ---QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ---TTSCHHHHHHHHHHHHHHHCC
T ss_pred ---hhhhHhHhHHHHHHHHHHhCC
Confidence 356777889999999999983
No 286
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.82 E-value=6.2e-10 Score=76.33 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=39.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+. ++++|||||+|.++++|++|+..|++..+.+|.|.|.++
T Consensus 59 i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 59 VCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp ECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 456654 799999999999999999999999999999999987654
No 287
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=5.3e-10 Score=76.60 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=42.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.|++++|||||+|.+.++|++||+. ++..+.++.|.|.++..+
T Consensus 48 i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 48 IMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp EEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred EeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 467889999999999999999999999987 888899999999877543
No 288
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.82 E-value=3.5e-10 Score=81.48 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=43.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 74 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 74 IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457888999999999999999999999999999999999999887754
No 289
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=6e-10 Score=77.04 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=41.2
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+. |+++|||||+|.++++|++|| .+++..+.+|.|.|..+..+
T Consensus 47 i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 47 LLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp ECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 577876 999999999999999999999 68888899999988766544
No 290
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=6.8e-10 Score=75.50 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=41.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++| .+++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4566 7899999999999999999999999999999999999877643
No 291
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.80 E-value=7.7e-10 Score=76.48 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.||+++|||||+|.+.++|++||+.++ ..+.++.|.|.++..
T Consensus 57 i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 57 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFP 103 (109)
T ss_dssp ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCC
T ss_pred EEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccC
Confidence 57899999999999999999999999998764 779999998876643
No 292
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=3.7e-10 Score=76.34 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=41.0
Q ss_pred CCCCC---CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 2 PKDQG---SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 2 ~rD~~---tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|+. |++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 38 ~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 38 SKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp EEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred EecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 34555 779999999999999999999999999999999999877743
No 293
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.1e-09 Score=76.32 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+. ++..+.++.|.|.++..
T Consensus 59 i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 59 VMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp EECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred EEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 467899999999999999999999999987 88889999999877743
No 294
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=1.4e-08 Score=78.92 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=56.6
Q ss_pred CCHHHHHHHHhccCcEEEEEeecC----CCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEEecc
Q 027706 96 ATAEDLRRYFSRFGRILDVYVPKD----PKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 160 (220)
Q Consensus 96 ~~~~~l~~~F~~~G~i~~~~i~~d----~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~~a~ 160 (220)
-.+++|.+.|++||.|.++.|+.+ ..++.++|++||+|.+.++|.+|+..++ .+.|+.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356789999999999999999854 4456899999999999999999998655 8999999999875
No 295
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.78 E-value=7.9e-10 Score=81.26 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 71 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 71 MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 467899999999999999999999999999999999999999887743
No 296
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=3.6e-10 Score=78.66 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++|| .|++..+.++.|.|.++.
T Consensus 57 i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 57 IISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp ECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred EEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 5789999999999999999999999999 999999999999987764
No 297
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.78 E-value=7.3e-10 Score=76.82 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=42.1
Q ss_pred CCCCCCCC---CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccc
Q 027706 1 MPKDQGSK---AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNA 50 (220)
Q Consensus 1 ~~rD~~tg---~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~ 50 (220)
|++|+.|+ +++|||||+|.+.++|++||+.|++..+.++.|.|.++..+.
T Consensus 50 i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 50 INNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred EecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 35666654 566999999999999999999999999999999998875543
No 298
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=2e-09 Score=76.39 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=41.9
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
.|+++||||||+|.+.++|++||+.|++..+.++.|.|.++..+..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 4789999999999999999999999999999999999998865544
No 299
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.77 E-value=9.4e-10 Score=75.54 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=42.9
Q ss_pred CCCCCCC--CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGS--KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~t--g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.+ ++++|||||+|++.++|++|++.||+..+.+|.|.+.+....
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 5777765 578999999999999999999999999999999998776443
No 300
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-09 Score=74.68 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++| +++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 48 ~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 48 MME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp EEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred EcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 455 899999999999999999999999999999999999887743
No 301
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.76 E-value=7.2e-10 Score=72.91 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=37.1
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
..|||||||+|.++++|++||+.||+.++.+++|.|+++.
T Consensus 40 ~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 40 YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3489999999999999999999999999999999998873
No 302
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.76 E-value=1.6e-09 Score=76.45 Aligned_cols=46 Identities=26% Similarity=0.172 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|++++|||||+|.+.++|++|| .|++..+.++.|.|.++.
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3567889999999999999999999999 899999999999887663
No 303
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.76 E-value=6.5e-10 Score=76.37 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=40.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|++|+ ||+++|||||+|.+.++|++||+.|++..+.++.|.|.++
T Consensus 61 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 61 VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35677 8999999999999999999999999999999999988665
No 304
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.73 E-value=1.1e-09 Score=73.45 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=40.7
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+. ++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 48 i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 48 ICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356665 9999999999999999999999999999999999887663
No 305
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.7e-09 Score=75.22 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=40.6
Q ss_pred CCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 4 DQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 4 D~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+..|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 60 ~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 60 RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 345899999999999999999999999999999999999887754
No 306
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.72 E-value=1.3e-09 Score=72.01 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=37.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGY 45 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~ 45 (220)
|++|+.||+++|||||+|.+.++|++||+. ++..+.++.|.|.+
T Consensus 43 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 43 IKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred EeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 467889999999999999999999999955 66668888887643
No 307
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.7e-09 Score=75.12 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=33.8
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCccccc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRM 40 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~ 40 (220)
|++|+ |++++|||||+|.+.++|++||+.|++..+.++.
T Consensus 57 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 57 ILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp EEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 45677 8999999999999999999999999998874433
No 308
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.72 E-value=1.2e-09 Score=81.18 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNA 50 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~ 50 (220)
|++|+.||.++|||||+|.+.++|++||..|++..+.++.|.|.++..+.
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 46788999999999999999999999999999999999999998875543
No 309
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.72 E-value=8.1e-10 Score=73.01 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=41.4
Q ss_pred CCCCCCCCC-cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKA-HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~-srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.|+. ++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 466777766 99999999999999999999999999999999887653
No 310
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.71 E-value=2e-09 Score=73.85 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccc-cCCCCCCC
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGR-MSHGGYGA 47 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r-~i~v~~~~ 47 (220)
+.||+++|||||+|.+.++|++||..|++..+.++ .|.|.++.
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence 47899999999999999999999999999999998 89887663
No 311
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.71 E-value=1.4e-09 Score=76.81 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+ ||+++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 67 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 67 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 35777 89999999999999999999999999999999999887663
No 312
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-09 Score=73.13 Aligned_cols=44 Identities=2% Similarity=-0.080 Sum_probs=39.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+.| ||||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4677776 8999999999999999999999999999999987764
No 313
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.3e-09 Score=74.47 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+ +++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 47 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp EEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred EEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35666 59999999999999999999999999999999999987764
No 314
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.5e-09 Score=72.89 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=39.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++|+.|++++|||||+|.+.++|++||.. +..+.++.|.|.++..
T Consensus 47 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 47 VKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNS 92 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECCCT
T ss_pred EEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEecCC
Confidence 467889999999999999999999999974 4568889998877643
No 315
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.66 E-value=7.8e-09 Score=68.84 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
.+++++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999999999999987764
No 316
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.2e-09 Score=74.63 Aligned_cols=46 Identities=15% Similarity=-0.054 Sum_probs=38.6
Q ss_pred CCCCCCCCCcccEEEEEecC----HHH----HHhhCC--CCCCCCcccccCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFAS----AVV----VDRATP--KEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~----~~~----A~~Ai~--~~~~~~~~~r~i~v~~~ 46 (220)
++.|+.||+|+|||||+|.+ +++ |.+||. .+++..+.++.|.|++-
T Consensus 38 li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 38 AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 46899999999999999996 434 788987 88999999999998754
No 317
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=4.7e-09 Score=71.53 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=38.8
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|+. .++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 48 ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45644 4799999999999999999999999999999999877743
No 318
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=7e-09 Score=70.65 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|+. .++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 48 ~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 48 IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 45554 4999999999999999999999999999999999877643
No 319
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.57 E-value=5.6e-09 Score=70.16 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
..+++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 35789999999999999999999999999999999998877643
No 320
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.57 E-value=2.2e-09 Score=75.25 Aligned_cols=42 Identities=14% Similarity=-0.027 Sum_probs=38.5
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
|++++||+||+|.+.++|++|++.||+..+.+|.|.+.|...
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 578999999999999999999999999999999999877643
No 321
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.56 E-value=1.4e-08 Score=86.57 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
|+.|+.|++++|||||+|.+.++|++||..|++..+.++.|.|.++.....
T Consensus 134 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 134 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 578899999999999999999999999999999999999999998865443
No 322
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=1.8e-08 Score=66.89 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred cEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccch
Q 027706 12 GIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAY 51 (220)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~ 51 (220)
|||||+|.+.++|++|++.|++..+.+|+|.|+|+..+..
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 9999999999999999999999999999999998865443
No 323
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.2e-08 Score=68.83 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=38.3
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 568899999999999999999999999999999999877644
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.54 E-value=4.1e-09 Score=76.27 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 5 QGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 5 ~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
..||+++|||||+|.+.++|++||..|++..+.++.|.|.++...
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 468999999999999999999999999999999999999887543
No 325
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.54 E-value=8.9e-09 Score=69.99 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=37.4
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|++|+ ||+++|||||+|.+.++|++||+ ++..+.++.|.|.++.
T Consensus 41 i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 41 IITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred EEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45777 99999999999999999999997 6777888888776554
No 326
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.4e-08 Score=69.82 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=38.4
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
.+++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3567999999999999999999999999999999999887743
No 327
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=9.6e-09 Score=70.87 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=39.3
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|+ +.++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 62 ~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 62 IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4554 45999999999999999999999999999999999887754
No 328
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.50 E-value=6.9e-09 Score=69.82 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccc
Q 027706 7 SKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNA 50 (220)
Q Consensus 7 tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~ 50 (220)
|+.++|||||+|.+.++|++|++.|++..+.++.|.|.++..+.
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 67899999999999999999999999999999999998876544
No 329
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.49 E-value=1.5e-08 Score=70.13 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
.+++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4689999999999999999999999999999999886653
No 330
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.47 E-value=2.3e-08 Score=69.48 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccchhhhhhhh
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY 58 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~~~~~~~r~ 58 (220)
++|||||+|.+.++|++|++.||+..+.+|.|.+.|+....+.......
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a 102 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDS 102 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGG
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCccc
Confidence 5999999999999999999999999999999999988766665554443
No 331
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=2e-08 Score=69.57 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=36.7
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
.++|||||+|.+.++|++||..|++..+.++.|.|.++..
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 3899999999999999999999999999999999887643
No 332
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=3.5e-08 Score=67.44 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=33.7
Q ss_pred ccEEEEEecCHHHHHhhCCCCCC--CCcccccCCCCCCCcc
Q 027706 11 RGIGFITFASAVVVDRATPKEDD--FRPVGRMSHGGYGAYN 49 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~--~~~~~r~i~v~~~~~~ 49 (220)
||||||+|+++++|++||+.+++ ..+.+++|.|.++..+
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 89999999999999999987654 5689999999888543
No 333
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=4.7e-08 Score=66.22 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.7
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+++|||||+|.+.++|++||..|++..+.++.|.|.++..
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5799999999999999999999999999999999987743
No 334
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.4e-06 Score=58.93 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=62.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcc-----CcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc--CCccCCeE
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQ 153 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~-----G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~ 153 (220)
....++|-+-|||..+++..|+.+++++ |.|..|.+..|.. -|+|+|.+...|.+|... +.+|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3446788889999999999999999999 9999999988743 699999999999999754 44999999
Q ss_pred EEEEe
Q 027706 154 VAIDS 158 (220)
Q Consensus 154 i~v~~ 158 (220)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=4e-08 Score=66.10 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 36899999999999999999999999999999999887744
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=5.8e-08 Score=67.41 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=27.9
Q ss_pred CCCCCCC---CCcccEEEEEecCHHHHHhhCCCC
Q 027706 1 MPKDQGS---KAHRGIGFITFASAVVVDRATPKE 31 (220)
Q Consensus 1 ~~rD~~t---g~srG~aFV~F~~~~~A~~Ai~~~ 31 (220)
+++|+.| |++||||||+|.++++|++||+.|
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4677777 899999999999999999999877
No 337
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.4e-07 Score=63.00 Aligned_cols=42 Identities=5% Similarity=-0.003 Sum_probs=37.2
Q ss_pred CCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 2 PKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 2 ~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
+.|+.|++ ||||+|.+.++|++||+ |++..+.++.|.|.++.
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45777776 99999999999999999 99999999999987664
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.38 E-value=6.9e-08 Score=67.84 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=37.9
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
.+++|||||+|.+.++|++||+.|++..+.++.|.|.++...
T Consensus 70 ~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 70 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 368999999999999999999999999999999998877543
No 339
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=6.5e-08 Score=65.28 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=36.1
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++||||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 4589999999999999999999999999999999877743
No 340
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.37 E-value=2.8e-08 Score=67.27 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=35.7
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCC--cccccCCCCCCCcc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFR--PVGRMSHGGYGAYN 49 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~--~~~r~i~v~~~~~~ 49 (220)
++||||||+|++.++|.+||+.|++.. +.+++|.|+|+..+
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 368999999999999999999888775 77999999888643
No 341
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.1e-05 Score=53.98 Aligned_cols=76 Identities=32% Similarity=0.374 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc-----cCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc-CCccCCeEEE
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSR-----FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVA 155 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~-----~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~i~ 155 (220)
....+|.|.|||..+.++.|+-+|+. -|.|..+.... +-|+|+|.+.+.|+.+|++ .|.|.+.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 34589999999999999999999986 25788887643 3699999999999999987 8899999999
Q ss_pred EEeccCCCCC
Q 027706 156 IDSATPLDDA 165 (220)
Q Consensus 156 v~~a~~~~~~ 165 (220)
|.-..++...
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9877666543
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.36 E-value=1e-07 Score=71.42 Aligned_cols=43 Identities=16% Similarity=-0.011 Sum_probs=39.1
Q ss_pred CCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 6 GSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 6 ~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
.|++++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 124 ~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 124 RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4689999999999999999999999999999999999887643
No 343
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.36 E-value=2.9e-08 Score=65.61 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=36.0
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
+++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 689999999999999999999999999999999887663
No 344
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.4e-07 Score=63.97 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+++||||||+|.+.++|++||+.+++ +.+++|.|.++..
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 47899999999999999999987554 5688888877643
No 345
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=4.4e-08 Score=67.79 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=34.2
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCC--CCcccccCCCCCCCc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDD--FRPVGRMSHGGYGAY 48 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~--~~~~~r~i~v~~~~~ 48 (220)
++||||||+|++.++|++||+.|++ ..+.++.|.|.++..
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 5689999999999999999987754 458999999987754
No 346
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=4.6e-08 Score=65.23 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=36.2
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCC-CCcccccCCCCCCCc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDD-FRPVGRMSHGGYGAY 48 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~-~~~~~r~i~v~~~~~ 48 (220)
.++|||||+|.+.++|++||+.|++ ..+.++.|.|.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 4799999999999999999999999 889999999887743
No 347
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.3e-07 Score=62.63 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=35.0
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
||||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 79999999999999999999999999999999887743
No 348
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.8e-07 Score=61.15 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=33.5
Q ss_pred cccEEEEEecCHHHHHhhCCCC-CCCCcccccCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKE-DDFRPVGRMSHGGYG 46 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~-~~~~~~~r~i~v~~~ 46 (220)
++|||||+|.+.++|++||+.| ++..+.++.|.|.++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 6899999999999999999988 888899999988765
No 349
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.2e-07 Score=63.69 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=35.6
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 589999999999999999999999999999999887643
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=9.3e-08 Score=66.26 Aligned_cols=38 Identities=8% Similarity=-0.028 Sum_probs=32.9
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCc-----ccccCCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRP-----VGRMSHGGYGA 47 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~-----~~r~i~v~~~~ 47 (220)
+||||||+|++.++|++|++.||+..+ .+++|.|.|+.
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 489999999999999999999999876 57788877663
No 351
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=1.1e-07 Score=65.80 Aligned_cols=41 Identities=5% Similarity=-0.134 Sum_probs=37.1
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
.++|||||+|.+.++|++||+.|++..+.++.|.|.++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999999999999999999887543
No 352
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=1.4e-07 Score=63.42 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.8
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcc--cccCCCCCCCc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPV--GRMSHGGYGAY 48 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~--~r~i~v~~~~~ 48 (220)
+|||||+|.+.++|++||+.|++..+. ++.|.|.++..
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 899999999999999999999999988 89999887754
No 353
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.28 E-value=1.8e-07 Score=68.88 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=37.1
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCccc--ccCCCCCCCcc
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVG--RMSHGGYGAYN 49 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~--r~i~v~~~~~~ 49 (220)
..++|||||+|.+.++|++|++.|++..+.+ +.|+|.|+..+
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 3478999999999999999999999999866 99999888654
No 354
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.28 E-value=1.2e-07 Score=63.91 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=35.3
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 489999999999999999999999999999999877643
No 355
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.1e-07 Score=65.31 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=35.2
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+|||||+|.+.++|++||..|++..+.++.|.|.++..
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 89999999999999999999999999999999887744
No 356
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.26 E-value=1.2e-07 Score=64.82 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=33.5
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCC--CcccccCCCCCCCc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDF--RPVGRMSHGGYGAY 48 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~--~~~~r~i~v~~~~~ 48 (220)
.||||||+|++.++|++||+.|++. .+.++.|.|.|+..
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 4899999999999999999877654 48999999988754
No 357
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.26 E-value=6.1e-08 Score=65.98 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=33.7
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCC--cccccCCCCCCCc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFR--PVGRMSHGGYGAY 48 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~--~~~r~i~v~~~~~ 48 (220)
.||||||+|++.++|++||+.|++.. +.+++|.|+++..
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 46899999999999999999887654 8999999988753
No 358
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.1e-07 Score=64.53 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=33.3
Q ss_pred ccEEEEEecCHHHHHhhCCCCC--CCCcccccCCCCCCCcc
Q 027706 11 RGIGFITFASAVVVDRATPKED--DFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~--~~~~~~r~i~v~~~~~~ 49 (220)
||||||+|++.++|++||+.|+ +..+.++.|.|.++..+
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 8999999999999999998764 45589999999887543
No 359
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.2e-07 Score=64.04 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=36.0
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
.++|||||+|.+.++|++||..|++..+.++.|.|.++..
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4589999999999999999999999999999999887743
No 360
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=1.2e-07 Score=65.17 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=33.6
Q ss_pred cEEEEEecCHHHHHhhCCCCCCCCccc-----ccCCCCCCCc
Q 027706 12 GIGFITFASAVVVDRATPKEDDFRPVG-----RMSHGGYGAY 48 (220)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~~~~~~~~~-----r~i~v~~~~~ 48 (220)
|||||+|.+.++|++||+.|++..+.+ +.|.|.++..
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 899999999999999999999999888 8888877754
No 361
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=2.2e-07 Score=62.18 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCCCCCCCCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCcc
Q 027706 1 MPKDQGSKAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYN 49 (220)
Q Consensus 1 ~~rD~~tg~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~ 49 (220)
|++|+.++. |||+|.+.++|++||+.|++..+.++.|.|.++..+
T Consensus 48 i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 48 VNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred eecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 356666654 999999999999999999999999999998877543
No 362
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.22 E-value=1.7e-07 Score=64.51 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=35.4
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
++|||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 68999999999999999999999999999999987764
No 363
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.22 E-value=4.5e-07 Score=62.96 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=32.2
Q ss_pred cEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCC
Q 027706 12 GIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYG 46 (220)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~ 46 (220)
|||||+|.+.++|++||+.|++..+.++.|.+.+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 99999999999999999999999999999776555
No 364
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.21 E-value=4e-07 Score=59.66 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCcccEEEEEecCHHHHHhhCCCCCCCCcccccCCC
Q 027706 8 KAHRGIGFITFASAVVVDRATPKEDDFRPVGRMSHG 43 (220)
Q Consensus 8 g~srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v 43 (220)
.+++|||||+|.+.++|++|| .|++..+.++.|.|
T Consensus 50 ~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 50 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 84 (87)
T ss_dssp CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence 355899999999999999999 99999999998875
No 365
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.20 E-value=2.1e-07 Score=63.91 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=35.3
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
+|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 79999999999999999999999999999999887754
No 366
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.20 E-value=3.4e-07 Score=66.56 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=36.0
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAY 48 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~ 48 (220)
++|||||+|.+.++|++||+.|++..+.++.|.|.++..
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 699999999999999999999999999999999887744
No 367
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=3.2e-07 Score=64.13 Aligned_cols=40 Identities=8% Similarity=-0.012 Sum_probs=34.1
Q ss_pred cccEEEEEecCHHHHHhhCCCCCC--CCcccccCCCCCCCcc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDD--FRPVGRMSHGGYGAYN 49 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~--~~~~~r~i~v~~~~~~ 49 (220)
.||||||+|++.++|++||+.+++ ..+.++.|.|.++..+
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 389999999999999999987764 4689999999887543
No 368
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.16 E-value=1.9e-07 Score=63.48 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=36.3
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCCccc
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGAYNA 50 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~~~~ 50 (220)
.+|||||+|.+.++|++||+.|++..+.++.|.|.++..+.
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 36899999999999999999999999999999998875443
No 369
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=4.1e-07 Score=60.12 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=33.9
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
++||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 5699999999999999999999999999999987764
No 370
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=3.6e-07 Score=60.66 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=34.1
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
++||||+|.+.++|++||+.|++..+.++.|.|.++.
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5699999999999999999999999999999987774
No 371
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.06 E-value=8.9e-07 Score=69.30 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=35.9
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCCc------------ccccCCCCCCCcc
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFRP------------VGRMSHGGYGAYN 49 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~~------------~~r~i~v~~~~~~ 49 (220)
.+||||||+|.+.++|+.|++.|++..+ .++.|.|.++...
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 3699999999999999999999999998 7899999888544
No 372
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.06 E-value=4.2e-07 Score=64.44 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=35.4
Q ss_pred cccE-EEEEecCHHHHHhhCCCCCCCCccc--ccCCCCCCCcc
Q 027706 10 HRGI-GFITFASAVVVDRATPKEDDFRPVG--RMSHGGYGAYN 49 (220)
Q Consensus 10 srG~-aFV~F~~~~~A~~Ai~~~~~~~~~~--r~i~v~~~~~~ 49 (220)
++|| |||+|.+.++|++|++.|++..+.+ +.|+|+|+...
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4788 9999999999999999999999887 88888887543
No 373
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.01 E-value=1.2e-06 Score=61.73 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=33.6
Q ss_pred cE-EEEEecCHHHHHhhCCCCCCCCccc--ccCCCCCCCcc
Q 027706 12 GI-GFITFASAVVVDRATPKEDDFRPVG--RMSHGGYGAYN 49 (220)
Q Consensus 12 G~-aFV~F~~~~~A~~Ai~~~~~~~~~~--r~i~v~~~~~~ 49 (220)
|| |||+|.+.++|++|++.|++..+.+ +.|.|.++...
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 86 9999999999999999999999877 58888887544
No 374
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.88 E-value=3.7e-06 Score=55.51 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=26.6
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
|||||||+|.++++|+++... ...+.++.|.|.++.
T Consensus 47 srGfaFV~F~~~~~A~~~~~~--~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSLCGE--DLIIKGISVHISNAE 82 (89)
T ss_dssp CCSEEEEEESCHHHHHHHTTC--EEEETTEEEEEEECC
T ss_pred CCCEEEEEECCHHHHHHHcCC--CcccCCEEEEEEEcC
Confidence 899999999999999965432 222557777776554
No 375
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=4.9e-06 Score=54.59 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.8
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
+||||||+|.+.++|++|+.. ...+.++.|.|.++.
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 899999999999999987643 334577777776553
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=1.1e-05 Score=53.08 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=30.6
Q ss_pred EEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
+||+|.+.++|.+||+ |++..+.+|.|+|+++.
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 8999999999999998 99999999999987664
No 377
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.64 E-value=0.00028 Score=46.67 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=45.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~ 145 (220)
..+.++| .+|.++...||.++|+.||.| .|.++.|. -|||.|.+.+.|..|+..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 4456666 999999999999999999954 47777763 699999999999988863
No 378
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=0.00045 Score=46.35 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEE
Q 027706 84 GKKIFVGRLPQEA-T----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 156 (220)
Q Consensus 84 ~~~l~v~nlp~~~-~----~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v 156 (220)
.++|+|.||+.++ . .+.++++|..|+++......+.-. =..|.|.+.++|.+|-..+| .+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998765 2 257899999999888877766422 47899999999999987777 799999999
Q ss_pred EeccCCC
Q 027706 157 DSATPLD 163 (220)
Q Consensus 157 ~~a~~~~ 163 (220)
-++++..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 379
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.54 E-value=1.7e-05 Score=65.32 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=31.6
Q ss_pred cccEEEEEecCHHHHHhhCCCCCCCCcc---cc--cCCCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKEDDFRPV---GR--MSHGGYGA 47 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~~~~~~---~r--~i~v~~~~ 47 (220)
+||||||+|++.++|++||+.||+..+. ++ ++.++|+.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 6899999999999999999999998753 34 56666664
No 380
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.33 E-value=0.00028 Score=46.76 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=43.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~ 145 (220)
+.++| ++|.++...||.++|+.||. ..|.++.|. -|||.|.+.+.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 44556 99999999999999999994 458888773 699999999999988763
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.10 E-value=3.8e-05 Score=50.71 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=28.9
Q ss_pred EEEEecCHHHHHhhCCCCCCCCcccccCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDDFRPVGRMSHGGY 45 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~ 45 (220)
+||+|.+.++|.+||+ |++..+.+|.|+|++
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 9999999999999997 999999999998753
No 382
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.01 E-value=0.0069 Score=41.68 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=56.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHh-cCCccCC-eEEEEEe
Q 027706 81 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG-QQVAIDS 158 (220)
Q Consensus 81 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g-~~i~v~~ 158 (220)
......|.|-++|... ...|...|++||.|.+..... ...+-.|.|.+..+|++||. ++..|.+ -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 4456788899999885 566888999999999887622 23489999999999999997 5556664 5666776
Q ss_pred cc
Q 027706 159 AT 160 (220)
Q Consensus 159 a~ 160 (220)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 383
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.93 E-value=0.0076 Score=39.53 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCC--ccceEEEEECCHHHHHHHHh
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSR 144 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~--~~g~afV~f~~~~~a~~al~ 144 (220)
.+|.|++||+.+||+++.+.++....+........+.+.+ .-.-|+|.|.+.+++..-..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 5799999999999999999999988776665554443322 23679999999888777665
No 384
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.05 E-value=0.0032 Score=53.66 Aligned_cols=56 Identities=14% Similarity=0.365 Sum_probs=42.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhc
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~ 145 (220)
.+.|+|. .|..+++.+|.+.|++||.|.++.+..+. .-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4789997 79999999999999999999999887652 25999999999998877643
No 385
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.03 E-value=0.01 Score=41.51 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=52.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEE-EeecCCC--------CC-----CccceEEEEECCHHHHHHHHh-cCC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPK--------RT-----GHRGFGFVTFAEEVVADRVSR-RSH 147 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~-~i~~d~~--------tg-----~~~g~afV~f~~~~~a~~al~-~~~ 147 (220)
....|.|-+.|.+.. ..+.+.|++||.|.+- .+..+.. +. ....+-.|+|.+..+|.+||. ++.
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 345677778987755 4577789999998762 2211000 00 024588999999999999996 677
Q ss_pred ccCCeEEEEEecc
Q 027706 148 EICGQQVAIDSAT 160 (220)
Q Consensus 148 ~i~g~~i~v~~a~ 160 (220)
.|.|.-|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 8999888787765
No 386
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.79 E-value=0.035 Score=36.70 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=43.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCC--ccceEEEEECCHHHHHHHHhc
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSRR 145 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~--~~g~afV~f~~~~~a~~al~~ 145 (220)
..+-+|.|+.||+.+||+++.+.++.+-.+..........+.+ .-.-|||.|.+.++...-.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 3457899999999999999888887765543322222222211 125699999999888777653
No 387
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.71 E-value=0.044 Score=37.89 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=23.1
Q ss_pred EEEEEecC-HHHHHhhCCCCCCC--CcccccCCC
Q 027706 13 IGFITFAS-AVVVDRATPKEDDF--RPVGRMSHG 43 (220)
Q Consensus 13 ~aFV~F~~-~~~A~~Ai~~~~~~--~~~~r~i~v 43 (220)
.|||+|.+ +++|.+|+..++.. .+.+..+.+
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 49999999 89999999887543 355555443
No 388
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.80 E-value=0.51 Score=40.73 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=43.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC
Q 027706 83 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 146 (220)
Q Consensus 83 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~ 146 (220)
....++|+ +|..+...+|.+.|+.||.+ .|.++.+. .|||.|.+.+.|..++...
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 34567776 88899999999999999954 46655542 7999999999999988643
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.78 E-value=0.19 Score=33.46 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=22.2
Q ss_pred cEEEEEecCHHHHHhhCCCCCCCCcccccCCC
Q 027706 12 GIGFITFASAVVVDRATPKEDDFRPVGRMSHG 43 (220)
Q Consensus 12 G~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v 43 (220)
+-|.|+|.+.+.|++.|++- .+.+.+..|.|
T Consensus 48 ~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV 78 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQA-DHELHGAQLSL 78 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEE
T ss_pred CcEEEEEcChHHHHHHhcCC-cceecCeEEEE
Confidence 56899999999999999551 23455555543
No 390
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=84.96 E-value=0.11 Score=35.16 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=28.6
Q ss_pred EEEEEecCHHHHHhhCCCCCCCCcccccCCCC
Q 027706 13 IGFITFASAVVVDRATPKEDDFRPVGRMSHGG 44 (220)
Q Consensus 13 ~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~ 44 (220)
=|+|+|.+...|-+|.-.+++..+.++.|++.
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 49999999999999998899999999998753
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.37 E-value=0.74 Score=30.69 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=30.8
Q ss_pred EEEEecCHHHHHhhCCCCCCCCcccccCCCCCCC
Q 027706 14 GFITFASAVVVDRATPKEDDFRPVGRMSHGGYGA 47 (220)
Q Consensus 14 aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~~~~ 47 (220)
.-|.|.++++|.+|-..||+..+.++.+++.++.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4689999999999999999999999999988775
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=53.41 E-value=7.4 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=21.5
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCccc
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVG 38 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~ 38 (220)
..+-.|.|.++.+|++|| ..|+..+.+
T Consensus 59 ~NWihI~Y~s~~~A~rAL-~kNG~ii~g 85 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKAL-SKDGRIFGE 85 (119)
T ss_dssp SSEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCeEEEEeCCHHHHHHHH-HhCCeEecC
Confidence 457899999999999999 456666553
No 393
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.56 E-value=28 Score=25.23 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=33.6
Q ss_pred CEEEEcCCCCC---------CCHHHHHHHH--hccCcEEEEEeecCCCCCCccceEEEEECCH
Q 027706 85 KKIFVGRLPQE---------ATAEDLRRYF--SRFGRILDVYVPKDPKRTGHRGFGFVTFAEE 136 (220)
Q Consensus 85 ~~l~v~nlp~~---------~~~~~l~~~F--~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~ 136 (220)
..+.|-|+|.. ....+|.+.| +.|.++....+... ..+.|++.|.|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCC
Confidence 35667787762 2346889877 99988764444433 23789999999864
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=51.85 E-value=9.1 Score=26.52 Aligned_cols=33 Identities=15% Similarity=-0.061 Sum_probs=26.2
Q ss_pred ccEEEEEecCHHHHHhhCCCCCCCCcccccCCCC
Q 027706 11 RGIGFITFASAVVVDRATPKEDDFRPVGRMSHGG 44 (220)
Q Consensus 11 rG~aFV~F~~~~~A~~Ai~~~~~~~~~~r~i~v~ 44 (220)
..+-.|+|.++.+|++|| ..|+..+.+..|-|.
T Consensus 62 ~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~ 94 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDAL-LENGAVFNGVLLGVI 94 (132)
T ss_dssp TTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEE
Confidence 457799999999999999 567777777665543
No 395
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=47.96 E-value=37 Score=21.64 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=18.3
Q ss_pred cccEEEEEecCHHHHHhhCCCCC
Q 027706 10 HRGIGFITFASAVVVDRATPKED 32 (220)
Q Consensus 10 srG~aFV~F~~~~~A~~Ai~~~~ 32 (220)
..||-||++...++...+|....
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCT
T ss_pred cCCEEEEEEecchhHHHHHHCCC
Confidence 68999999998888888885443
No 396
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=46.68 E-value=45 Score=19.99 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=35.4
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhccC-----cEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcCC--ccCCeEEEEE
Q 027706 86 KIFVG-RLPQEATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 157 (220)
Q Consensus 86 ~l~v~-nlp~~~~~~~l~~~F~~~G-----~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~i~v~ 157 (220)
+|||. +--..+...+|..++..-+ .|-.|.|..+ |.||+..... +..++..+. .+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 45553 1123456667777665443 3556777443 8999987643 455554433 6789988887
Q ss_pred ecc
Q 027706 158 SAT 160 (220)
Q Consensus 158 ~a~ 160 (220)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 664
No 397
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=44.00 E-value=5 Score=32.88 Aligned_cols=9 Identities=33% Similarity=0.191 Sum_probs=3.9
Q ss_pred CCHHHHHHH
Q 027706 96 ATAEDLRRY 104 (220)
Q Consensus 96 ~~~~~l~~~ 104 (220)
+++++|+++
T Consensus 229 vt~~~l~~i 237 (358)
T 2pk2_A 229 VTLELLDEL 237 (358)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444443
No 398
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=36.79 E-value=32 Score=16.78 Aligned_cols=9 Identities=67% Similarity=1.069 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 027706 212 RGDWRYRPY 220 (220)
Q Consensus 212 ~~~~~~~~~ 220 (220)
+.+.|-+||
T Consensus 21 R~drr~rpy 29 (29)
T 4fdd_B 21 RQDRRERPY 29 (29)
T ss_pred hhhcccCCC
Confidence 334466665
No 399
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=34.04 E-value=8.4 Score=27.25 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHHHHHhccCcEEEEEeecCCCCCCccceEEEEEC
Q 027706 99 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 134 (220)
Q Consensus 99 ~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~ 134 (220)
+++.++|...|.|+.. .+ .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 3455666666655433 22 5789999976
No 400
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.50 E-value=52 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEe
Q 027706 84 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV 116 (220)
Q Consensus 84 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i 116 (220)
..-+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999977 55554444
No 401
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=28.47 E-value=1.2e+02 Score=19.37 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeecCCCCCCccceEEEEECCHHHHHHHHhcC---C------ccCCe
Q 027706 82 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS---H------EICGQ 152 (220)
Q Consensus 82 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~d~~tg~~~g~afV~f~~~~~a~~al~~~---~------~i~g~ 152 (220)
...+-|-|-|+|..+-..++.-.....|.--.|..+. |-|.+.|.+.++..-|++.+ + +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 3456777889999999988887777777655666542 47999999998887776422 1 56677
Q ss_pred EEEEEeccC
Q 027706 153 QVAIDSATP 161 (220)
Q Consensus 153 ~i~v~~a~~ 161 (220)
.+.|--..|
T Consensus 82 icdvistip 90 (129)
T 4eyt_A 82 ICDVISTIP 90 (129)
T ss_dssp EEEEECCCC
T ss_pred eeeeeecCC
Confidence 666654444
No 402
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=27.60 E-value=24 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.4
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 368999999654
No 403
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=26.57 E-value=26 Score=20.94 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=9.0
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (67)
T 3cam_A 11 DAKGFGFITPDE 22 (67)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 368999998543
No 404
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=25.95 E-value=26 Score=21.43 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=9.3
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 368999998654
No 405
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.93 E-value=47 Score=21.87 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=22.7
Q ss_pred CcccEEEEEecCHHHHHhhCCCCCCCC
Q 027706 9 AHRGIGFITFASAVVVDRATPKEDDFR 35 (220)
Q Consensus 9 ~srG~aFV~F~~~~~A~~Ai~~~~~~~ 35 (220)
..+||=|||=.++.++..||+.+.+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 469999999999999999997765443
No 406
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=25.93 E-value=27 Score=20.72 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.8
Q ss_pred cccEEEEEecC
Q 027706 10 HRGIGFITFAS 20 (220)
Q Consensus 10 srG~aFV~F~~ 20 (220)
.|||+||+=.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 68999998654
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.26 E-value=1.5e+02 Score=19.59 Aligned_cols=48 Identities=6% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHhc-cC---cEEEE-EeecCCCCCCccceEEEEECCHHHHHHH
Q 027706 94 QEATAEDLRRYFSR-FG---RILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRV 142 (220)
Q Consensus 94 ~~~~~~~l~~~F~~-~G---~i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~a 142 (220)
.+++..+|++.+.+ |+ .+..| .+-..-..+++.|||.| |++.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46778888776653 33 22233 34443345677899977 7888877765
No 408
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.10 E-value=28 Score=27.20 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=25.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEEeec
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 118 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~i~~ 118 (220)
..+.|+|||+.++...|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999997655565554443
No 409
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=25.00 E-value=1.2e+02 Score=19.76 Aligned_cols=48 Identities=10% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhcc-C---cEEEE-EeecCCCCCCccceEEEEECCHHHHHHH
Q 027706 94 QEATAEDLRRYFSRF-G---RILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRV 142 (220)
Q Consensus 94 ~~~~~~~l~~~F~~~-G---~i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~a 142 (220)
.+++..+|++.+.+. + .+..| .+-.....+++.|||.| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 567888888777543 3 22233 34444345667888876 7777776665
No 410
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=24.76 E-value=29 Score=21.10 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.0
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T 3a0j_A 11 AEKGYGFIEREG 22 (73)
T ss_dssp TTTTEEEEECTT
T ss_pred CCCCEEEEecCC
Confidence 368999998543
No 411
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=24.24 E-value=30 Score=20.51 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=9.1
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 10 ~~kGfGFI~~~~ 21 (66)
T 1g6p_A 10 SKKGYGFITKDE 21 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 358999998553
No 412
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.21 E-value=30 Score=21.43 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.7
Q ss_pred cccEEEEEecC
Q 027706 10 HRGIGFITFAS 20 (220)
Q Consensus 10 srG~aFV~F~~ 20 (220)
.|||+||+=.+
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 68999998543
No 413
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.02 E-value=1.5e+02 Score=19.38 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHhcc-C---cEEEE-EeecCCCCCCccceEEEEECCHHHHHHH
Q 027706 94 QEATAEDLRRYFSRF-G---RILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRV 142 (220)
Q Consensus 94 ~~~~~~~l~~~F~~~-G---~i~~~-~i~~d~~tg~~~g~afV~f~~~~~a~~a 142 (220)
.+++..+|++.+.+. + .+..| .+-.....+++.|||.| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 567888888777542 3 22223 34444445677888876 7777776654
No 414
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=23.97 E-value=32 Score=21.97 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.5
Q ss_pred CcccEEEEEec
Q 027706 9 AHRGIGFITFA 19 (220)
Q Consensus 9 ~srG~aFV~F~ 19 (220)
..|||+||+-.
T Consensus 18 ~~KGfGFI~~~ 28 (90)
T 3ulj_A 18 VRMGFGFISMT 28 (90)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCeEEeEec
Confidence 46899999754
No 415
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.96 E-value=1e+02 Score=19.45 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=20.3
Q ss_pred cEEEEEeecCCCCCCccceEEEEECC
Q 027706 110 RILDVYVPKDPKRTGHRGFGFVTFAE 135 (220)
Q Consensus 110 ~i~~~~i~~d~~tg~~~g~afV~f~~ 135 (220)
+|++++|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776655567889999999986
No 416
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=22.33 E-value=34 Score=20.61 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.2
Q ss_pred CcccEEEEEecC
Q 027706 9 AHRGIGFITFAS 20 (220)
Q Consensus 9 ~srG~aFV~F~~ 20 (220)
..|||+||+=.+
T Consensus 15 ~~kGfGFI~~~~ 26 (71)
T 3i2z_B 15 ESKGFGFITPED 26 (71)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCcEEEecCC
Confidence 468999998654
No 417
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.82 E-value=60 Score=19.43 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=8.8
Q ss_pred cceEEEEECCH
Q 027706 126 RGFGFVTFAEE 136 (220)
Q Consensus 126 ~g~afV~f~~~ 136 (220)
+..|+|.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 45899999973
No 418
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.97 E-value=79 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=22.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCcEEEEE
Q 027706 85 KKIFVGRLPQEATAEDLRRYFSRFGRILDVY 115 (220)
Q Consensus 85 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~~~ 115 (220)
..+.|+|||+.++...|..++.....+..+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 3578999999999998888887543444443
No 419
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.06 E-value=1.3e+02 Score=19.51 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.0
Q ss_pred cEEEEEeecCCCCCCccceEEEEECC
Q 027706 110 RILDVYVPKDPKRTGHRGFGFVTFAE 135 (220)
Q Consensus 110 ~i~~~~i~~d~~tg~~~g~afV~f~~ 135 (220)
.|++++|..-...++-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776655557889999999986
Done!