Query 027707
Match_columns 220
No_of_seqs 83 out of 85
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 23:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 99.4 2.1E-13 7.1E-18 109.3 5.6 74 6-83 10-173 (186)
2 2xri_A ERI1 exoribonuclease 3; 99.3 3.1E-12 1.1E-16 105.6 6.2 33 8-40 31-63 (224)
3 2gui_A DNA polymerase III epsi 99.3 4.9E-12 1.7E-16 100.9 6.2 36 8-43 9-47 (194)
4 2gbz_A Oligoribonuclease; ORN, 99.2 1.3E-11 4.3E-16 100.0 6.6 33 6-40 7-39 (194)
5 1w0h_A 3'-5' exonuclease ERI1; 99.2 8.9E-12 3E-16 99.6 5.5 32 52-83 159-192 (204)
6 2f96_A Ribonuclease T; RNAse, 99.2 1.8E-11 6.3E-16 100.3 6.7 33 52-84 176-211 (224)
7 3tr8_A Oligoribonuclease; tran 99.2 2.4E-11 8.2E-16 100.3 6.5 35 3-39 4-38 (186)
8 3mxm_B Three prime repair exon 99.2 9.1E-12 3.1E-16 105.0 4.0 32 7-40 11-42 (242)
9 1y97_A Three prime repair exon 99.2 1.7E-11 5.7E-16 100.6 4.9 35 4-40 6-40 (238)
10 2igi_A Oligoribonuclease; RNAs 99.2 3.9E-11 1.3E-15 94.6 6.3 33 6-40 3-35 (180)
11 3v9w_A Ribonuclease T; DEDD nu 99.1 6.3E-11 2.1E-15 97.5 6.6 33 52-84 184-219 (235)
12 3cg7_A CRN-4, cell death-relat 99.1 7.5E-11 2.6E-15 103.1 6.5 44 8-51 19-65 (308)
13 1zbh_A 3'-5' exonuclease ERI1; 99.1 1E-10 3.5E-15 101.1 5.7 32 52-83 227-260 (299)
14 3u3y_B Three prime repair exon 99.0 9.2E-11 3.1E-15 104.8 4.3 33 7-41 11-43 (314)
15 1wlj_A Interferon stimulated g 99.0 4.3E-10 1.5E-14 90.4 6.4 33 52-84 130-167 (189)
16 1zbu_A ERI-1 homolog, 3'-5' ex 99.0 3.4E-10 1.1E-14 101.4 4.6 32 52-83 277-310 (349)
17 2qxf_A Exodeoxyribonuclease I; 98.9 1.1E-09 3.9E-14 102.2 6.5 36 5-42 6-42 (482)
18 1yd6_A UVRC; DNA binding prote 98.8 3.7E-10 1.3E-14 86.5 -1.8 51 107-158 9-62 (99)
19 1yd0_A Uvrabc system protein C 98.7 7.8E-10 2.7E-14 84.4 -2.5 62 107-171 9-82 (96)
20 2wsh_A Endonuclease II; GIY-YI 97.4 9.5E-06 3.3E-10 66.6 -2.4 49 107-156 31-91 (143)
21 4hec_A Putative uncharacterize 96.1 0.0078 2.7E-07 50.6 5.8 30 10-42 24-53 (190)
22 2kfn_A Klenow fragment of DNA 89.4 0.77 2.6E-05 43.3 7.2 26 8-35 26-51 (605)
23 1x9m_A DNA polymerase; DNA plo 80.6 2 6.8E-05 41.4 5.4 66 10-82 1-72 (698)
24 2fqm_A Phosphoprotein, P prote 50.7 6.2 0.00021 29.4 1.5 30 178-207 1-30 (75)
25 1qht_A Protein (DNA polymerase 42.2 22 0.00075 34.7 4.3 27 7-35 134-163 (775)
26 4gmj_B CCR4-NOT transcription 36.0 24 0.00083 31.0 3.2 36 52-87 209-246 (285)
27 2d5r_A CCR4-NOT transcription 30.4 32 0.0011 29.7 3.0 36 52-87 199-236 (252)
28 2p51_A SPCC18.06C protein; DED 29.2 36 0.0012 31.0 3.2 36 52-87 220-257 (333)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.40 E-value=2.1e-13 Score=109.26 Aligned_cols=74 Identities=31% Similarity=0.446 Sum_probs=60.8
Q ss_pred CCceEEEEEeecCCCCCCCCceeEEEEeeEEEecCceeecccHHHH----------------------------------
Q 027707 6 DRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPKTLEELQPYSTL---------------------------------- 51 (220)
Q Consensus 6 ~~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~~l~e~~sf~TL---------------------------------- 51 (220)
.+..+|+||+||||.++.. .+|+|||||++..|+++ ++|++|
T Consensus 10 ~~~~~v~iD~ETTGl~~~~--~~IieIg~v~~~~g~i~--~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~ 85 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQV--DEIIEIGAVKIQGGQIV--DEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPE 85 (186)
T ss_dssp ---CEEEEEEEESCSCTTT--CCEEEEEEEEEETTEEE--EEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCC--CeEEEEEEEEEECCEEE--EEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHH
Confidence 4568999999999998765 68999999999988764 233322
Q ss_pred -------------------------------------------------------HHHHHHhhCCC-CCccccchhhhcc
Q 027707 52 -------------------------------------------------------LASLATYFGLG-QQTHRSLDDVRMN 75 (220)
Q Consensus 52 -------------------------------------------------------LatLA~~Fg~~-~~~HRALdDar~t 75 (220)
|.+|+++||+. .+.||||+||++|
T Consensus 86 ~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~~H~Al~Da~~t 165 (186)
T 2p1j_A 86 FLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARVT 165 (186)
T ss_dssp HHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTTCCHHHHHHHHH
T ss_pred HHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCCCcCHHHHHHHH
Confidence 67799999998 7899999999999
Q ss_pred HHHHHHhh
Q 027707 76 LEVLKYCA 83 (220)
Q Consensus 76 vdVl~~~~ 83 (220)
++++..++
T Consensus 166 ~~l~~~l~ 173 (186)
T 2p1j_A 166 AQVFLRFV 173 (186)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999886
No 2
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=105.59 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred ceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 027707 8 FEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (220)
Q Consensus 8 ~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~ 40 (220)
..+|+||+||||+++...+.+|||||||++.++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~ 63 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGR 63 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETT
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecC
Confidence 579999999999998764469999999999987
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.27 E-value=4.9e-12 Score=100.88 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=29.5
Q ss_pred ceEEEEEeecCCCCCC---CCceeEEEEeeEEEecCcee
Q 027707 8 FEIAFFDVETAFPNPP---GQRIAILEFGAILVCPKTLE 43 (220)
Q Consensus 8 ~e~vffDvETT~~~~~---~~~~~ilEfgAI~V~p~~l~ 43 (220)
..+|+||+||||.++. +++.+|||+|||++..|.++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~ 47 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT 47 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEEC
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEe
Confidence 4689999999999872 12389999999999887663
No 4
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.3e-11 Score=99.95 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 027707 6 DRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (220)
Q Consensus 6 ~~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~ 40 (220)
.+..+|+||+||||+++.. .+|||+|||+.-++
T Consensus 7 ~~~~~vviD~ETTGl~p~~--d~IieIgav~~~~~ 39 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDR--DSIIEIATIVTDAQ 39 (194)
T ss_dssp -CCEEEEEEEEESCSCTTT--CCEEEEEEEEEETT
T ss_pred CCCCEEEEEeECCCCCCCC--CccEEEEEEEEcCC
Confidence 4568999999999999865 89999999985544
No 5
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.22 E-value=8.9e-12 Score=99.55 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=28.5
Q ss_pred HHHHHHhhCCC-C-CccccchhhhccHHHHHHhh
Q 027707 52 LASLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCA 83 (220)
Q Consensus 52 LatLA~~Fg~~-~-~~HRALdDar~tvdVl~~~~ 83 (220)
|++|+++||+. . +.||||+||++|++|+..++
T Consensus 159 L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~ 192 (204)
T 1w0h_A 159 LTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRML 192 (204)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHH
Confidence 77789999998 4 47999999999999999886
No 6
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.20 E-value=1.8e-11 Score=100.26 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHHHHhhCCC---CCccccchhhhccHHHHHHhhh
Q 027707 52 LASLATYFGLG---QQTHRSLDDVRMNLEVLKYCAT 84 (220)
Q Consensus 52 LatLA~~Fg~~---~~~HRALdDar~tvdVl~~~~g 84 (220)
|.+|+++||+. .+.||||+||++|++|+..++.
T Consensus 176 L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~ 211 (224)
T 2f96_A 176 LAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVN 211 (224)
T ss_dssp HHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 67888999997 3799999999999999998873
No 7
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.18 E-value=2.4e-11 Score=100.34 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCCCCceEEEEEeecCCCCCCCCceeEEEEeeEEEec
Q 027707 3 PRQDRFEIAFFDVETAFPNPPGQRIAILEFGAILVCP 39 (220)
Q Consensus 3 ~~~~~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p 39 (220)
|...+..+|+||+||||++|.+ .+|||||||++.+
T Consensus 4 ~~~~~~~~v~~D~ETTGL~p~~--d~IiEIgaV~~d~ 38 (186)
T 3tr8_A 4 MDFSDDNLIWLDLEMTGLDPER--DRIIEIATIVTNS 38 (186)
T ss_dssp CCCCTTCEEEEEEEESSSCTTT--CCEEEEEEEEECT
T ss_pred CcCCCCcEEEEEEECCCCCCCC--CceEEEEEEEEcC
Confidence 4557789999999999999975 9999999995544
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.18 E-value=9.1e-12 Score=104.99 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=28.6
Q ss_pred CceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 027707 7 RFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (220)
Q Consensus 7 ~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~ 40 (220)
-.+||+||+||||.++.. .+|||||||+|..+
T Consensus 11 ~~~~vv~D~ETTGl~~~~--d~IiEIgav~v~~~ 42 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSR--PEVTELCLLAVHRR 42 (242)
T ss_dssp CSEEEEEEEEESSCGGGC--CCEEEEEEEEEEHH
T ss_pred cceEEEEEeecCCCCCCC--CeeEEEEEEEecCC
Confidence 367999999999998865 89999999999876
No 9
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.17 E-value=1.7e-11 Score=100.61 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCCCceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 027707 4 RQDRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (220)
Q Consensus 4 ~~~~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~ 40 (220)
......+|+||+||||+++.. .+|||||||++.++
T Consensus 6 ~~~~~~~v~iD~ETTGl~~~~--~~IieIg~v~~~~~ 40 (238)
T 1y97_A 6 APRAETFVFLDLEATGLPSVE--PEIAELSLFAVHRS 40 (238)
T ss_dssp SCCCSEEEEEEEEESSCGGGC--CCEEEEEEEEEEHH
T ss_pred CCccCeEEEEEeeCCCcCCCC--CcEEEEEEEEeccc
Confidence 334468999999999998654 79999999999865
No 10
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.16 E-value=3.9e-11 Score=94.65 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 027707 6 DRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (220)
Q Consensus 6 ~~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~ 40 (220)
.+..+|+||+||||+++.. .+|||+|||++.++
T Consensus 3 ~~~~~v~iD~ETTGl~~~~--~~IieIg~v~~~~~ 35 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDPER--DRIIEIATLVTDAN 35 (180)
T ss_dssp GGGCEEEEEEEESSSCTTT--CCEEEEEEEEECTT
T ss_pred CCCcEEEEEeeCCCCCCCC--CceEEEEEEEEcCC
Confidence 3567999999999999865 78999999988754
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.13 E-value=6.3e-11 Score=97.50 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=29.6
Q ss_pred HHHHHHhhCCC-C--CccccchhhhccHHHHHHhhh
Q 027707 52 LASLATYFGLG-Q--QTHRSLDDVRMNLEVLKYCAT 84 (220)
Q Consensus 52 LatLA~~Fg~~-~--~~HRALdDar~tvdVl~~~~g 84 (220)
|.+|+.+||+. . +.||||+||++|++++..++-
T Consensus 184 L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~ 219 (235)
T 3v9w_A 184 LSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVN 219 (235)
T ss_dssp HHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 77899999998 2 699999999999999999873
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.11 E-value=7.5e-11 Score=103.12 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=32.1
Q ss_pred ceEEEEEeecCCCCCCCC-ceeEEEEeeEEE--ecCceeecccHHHH
Q 027707 8 FEIAFFDVETAFPNPPGQ-RIAILEFGAILV--CPKTLEELQPYSTL 51 (220)
Q Consensus 8 ~e~vffDvETT~~~~~~~-~~~ilEfgAI~V--~p~~l~e~~sf~TL 51 (220)
..+|+||+||||.++... ..+|||||||+| ..|++++.++|++|
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~l 65 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKY 65 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeE
Confidence 579999999999987641 248999999999 45666442244444
No 13
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=101.08 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.4
Q ss_pred HHHHHHhhCCC-C-CccccchhhhccHHHHHHhh
Q 027707 52 LASLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCA 83 (220)
Q Consensus 52 LatLA~~Fg~~-~-~~HRALdDar~tvdVl~~~~ 83 (220)
|.+|+.+||+. . ..||||+||++|++||..++
T Consensus 227 L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~ 260 (299)
T 1zbh_A 227 LTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRML 260 (299)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 67788899998 4 47999999999999999988
No 14
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.04 E-value=9.2e-11 Score=104.83 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=29.0
Q ss_pred CceEEEEEeecCCCCCCCCceeEEEEeeEEEecCc
Q 027707 7 RFEIAFFDVETAFPNPPGQRIAILEFGAILVCPKT 41 (220)
Q Consensus 7 ~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~p~~ 41 (220)
-.+|||||+||||.++.. .+|||||||+|..+.
T Consensus 11 ~~tfVv~DlETTGL~~~~--d~IIEIgaV~v~~~~ 43 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSR--PEVTELCLLAVHRRA 43 (314)
T ss_dssp CSEEEEEEEEESSCGGGC--CCEEEEEEEEEEHHH
T ss_pred cCCEEEEEEECCCCCCCC--CeEEEEEEEEEECCc
Confidence 467999999999999865 899999999998763
No 15
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.00 E-value=4.3e-10 Score=90.36 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.6
Q ss_pred HHHHHHh-hCCC-CC---ccccchhhhccHHHHHHhhh
Q 027707 52 LASLATY-FGLG-QQ---THRSLDDVRMNLEVLKYCAT 84 (220)
Q Consensus 52 LatLA~~-Fg~~-~~---~HRALdDar~tvdVl~~~~g 84 (220)
|.+|+++ ||+. .. .||||+||++|+++++.+.-
T Consensus 130 L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~ 167 (189)
T 1wlj_A 130 LRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167 (189)
T ss_dssp HHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 6778887 7998 44 89999999999999998873
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.96 E-value=3.4e-10 Score=101.38 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHHhhCCC-C-CccccchhhhccHHHHHHhh
Q 027707 52 LASLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCA 83 (220)
Q Consensus 52 LatLA~~Fg~~-~-~~HRALdDar~tvdVl~~~~ 83 (220)
|.+|+.+||+. . ..||||+||++|++||..++
T Consensus 277 L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll 310 (349)
T 1zbu_A 277 LTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRML 310 (349)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 66788899998 4 47999999999999999988
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.92 E-value=1.1e-09 Score=102.22 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCCceEEEEEeecCCCCCCCCceeEEEEeeEEEe-cCce
Q 027707 5 QDRFEIAFFDVETAFPNPPGQRIAILEFGAILVC-PKTL 42 (220)
Q Consensus 5 ~~~~e~vffDvETT~~~~~~~~~~ilEfgAI~V~-p~~l 42 (220)
..+..||+||+||||.++.. .+|||||||++. .|.+
T Consensus 6 ~~~~~~vv~DlETTGl~p~~--d~IIEIgaV~vd~~g~i 42 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPAL--DRPAQFAAIRTDSEFNV 42 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTT--SCEEEEEEEEECTTSCB
T ss_pred CCCCCEEEEEEECCCCCCCC--CeEEEEEEEEEECCCeE
Confidence 45678999999999999876 899999999998 4444
No 18
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=98.77 E-value=3.7e-10 Score=86.45 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=44.5
Q ss_pred cccCCCCCCeeeeccCCc--ce-ecCcceeeeccccccCCCCCccceeeeccccc
Q 027707 107 ASVSEGSSGYARFMEPDE--LY-CSRLKIRYGISTRFVDQAGRPRLSFVVDASQS 158 (220)
Q Consensus 107 a~~lp~~pGvy~F~~p~d--Ly-gtsl~vR~rVrsyFt~se~RpRm~emVdla~~ 158 (220)
.+.+|..||||.|.+.++ || |.+.|||.||++||+++ .++|+..||.-..+
T Consensus 9 l~~lP~~pGVY~~~d~~g~vlYVGKAknLr~Rv~syf~~~-~~~k~~~m~~~~~~ 62 (99)
T 1yd6_A 9 LAVLPEQPGCYLMKDKHGTVIYVGKAKSLKERVRSYFTGT-HDGKTQRLVEEIAD 62 (99)
T ss_dssp HHTCCSSCEEEEEECSSCCEEEEEEESCHHHHHHGGGSSC-CCHHHHHHHHHCSE
T ss_pred HHhCCCCCeEEEEEcCCCCEEEEecCcCHHHHHHHHcccC-CChHHHHHHHheeE
Confidence 467999999999999888 99 99999999999999998 77888877754444
No 19
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=98.67 E-value=7.8e-10 Score=84.39 Aligned_cols=62 Identities=8% Similarity=0.138 Sum_probs=48.4
Q ss_pred cccCCCCCCeeeeccCCc--ce-ecCcceeeeccccccCCCCCccceeeeccccc---------hHHHHHHHHHHHH
Q 027707 107 ASVSEGSSGYARFMEPDE--LY-CSRLKIRYGISTRFVDQAGRPRLSFVVDASQS---------LCTVLDACEVVAK 171 (220)
Q Consensus 107 a~~lp~~pGvy~F~~p~d--Ly-gtsl~vR~rVrsyFt~se~RpRm~emVdla~~---------v~~Vl~~Cd~~a~ 171 (220)
.+.+|..||||.|.+ ++ || |.+.|||.||++||+++ .+|...|+.-..+ +++.|-.+.-|-+
T Consensus 9 l~~lP~~pGVY~~~d-~g~vlYVGKAknLr~Rv~syf~~~--~~k~~~~~~~~~~i~~~~t~sE~eAlllE~~lIk~ 82 (96)
T 1yd0_A 9 ILLAPEEPGVYIFKN-KGVPIYIGKAKRLSNRLRSYLNPQ--TEKVFRIGEEADELETIVVMNEREAFILEANLIKK 82 (96)
T ss_dssp HHHCCSSCEEEEEEE-TTEEEEEEEESSHHHHHHGGGSCS--SHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCeEEEEEC-CCeEEEEecCcCHHHHHHHHccCC--CHHHHHHHHhccEEEEEEECCHHHHHHHHHHHHHH
Confidence 567899999999999 77 99 99999999999999987 7788777654433 4555555554443
No 20
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=97.39 E-value=9.5e-06 Score=66.59 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=37.2
Q ss_pred cccCCCCCC---eeeeccCCc--ce-ecCcceeeeccccccCCC------CCccceeeeccc
Q 027707 107 ASVSEGSSG---YARFMEPDE--LY-CSRLKIRYGISTRFVDQA------GRPRLSFVVDAS 156 (220)
Q Consensus 107 a~~lp~~pG---vy~F~~p~d--Ly-gtsl~vR~rVrsyFt~se------~RpRm~emVdla 156 (220)
.+.+|..|| ||.|.+ ++ || |.+.|||.||++||+.+. ..||...||...
T Consensus 31 l~~lp~~pG~~GVY~~~~-~g~ViYVGKAknLkkRv~sYf~~~~~~~~~~~~~Kt~~mv~~i 91 (143)
T 2wsh_A 31 IKQLSIPNKYNVIYAIAI-NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSAL 91 (143)
T ss_dssp BCCCCCCCCCSEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred cccCcCCCCCceEEEEEc-CCeEEEEEecccHhHHHHHhcCCCCcccccCCCHHHHHHHHHH
Confidence 344666666 999997 55 99 999999999999998752 466666666433
No 21
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=96.14 E-value=0.0078 Score=50.58 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=22.1
Q ss_pred EEEEEeecCCCCCCCCceeEEEEeeEEEecCce
Q 027707 10 IAFFDVETAFPNPPGQRIAILEFGAILVCPKTL 42 (220)
Q Consensus 10 ~vffDvETT~~~~~~~~~~ilEfgAI~V~p~~l 42 (220)
-+|+|.|+|+ +.. ...||.+|+|--.++-.
T Consensus 24 r~FlDTEFt~-d~~--~~eLISIGlV~EdGrEF 53 (190)
T 4hec_A 24 RYFYDTEFIE-DGH--TIELISIGVVAEDGREY 53 (190)
T ss_dssp EEEEEEEEEE-CSS--CEEEEEEEEEETTSCEE
T ss_pred EEEEeeeecC-CCC--CCCEEEEEEEcCCCCEE
Confidence 5899999997 222 37899999986554433
No 22
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=89.42 E-value=0.77 Score=43.32 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.4
Q ss_pred ceEEEEEeecCCCCCCCCceeEEEEeeE
Q 027707 8 FEIAFFDVETAFPNPPGQRIAILEFGAI 35 (220)
Q Consensus 8 ~e~vffDvETT~~~~~~~~~~ilEfgAI 35 (220)
.++++||+|||+.++.. ..|+++|+.
T Consensus 26 ~~~va~DtEttgl~~~~--~~iv~I~~~ 51 (605)
T 2kfn_A 26 APVFAFDTETDSLDNIS--ANLVGLSFA 51 (605)
T ss_dssp SSSEEEEEEESCSCTTT--CCEEEEEEE
T ss_pred CCeEEEEEecCCCCccc--CceEEEEEE
Confidence 46799999999998754 579998866
No 23
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=80.61 E-value=2 Score=41.41 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=35.8
Q ss_pred EEEEEeecCCCCCCCCceeEEEEeeEEEec---Cceeecc--cHHHHHHHHHHhhCCCCCccccchhh-hccHHHHHHh
Q 027707 10 IAFFDVETAFPNPPGQRIAILEFGAILVCP---KTLEELQ--PYSTLLASLATYFGLGQQTHRSLDDV-RMNLEVLKYC 82 (220)
Q Consensus 10 ~vffDvETT~~~~~~~~~~ilEfgAI~V~p---~~l~e~~--sf~TLLatLA~~Fg~~~~~HRALdDa-r~tvdVl~~~ 82 (220)
||+||+||||.++... .| +.|.+.. +...-++ .....+..|..+|. + ...-..-++ ..-+.+|++.
T Consensus 1 ~vv~D~ETtGl~~~~d--~i---~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~-~~~kV~HNa~kfD~~~L~~~ 72 (698)
T 1x9m_A 1 MIVSDIEANALLESVT--KF---HCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-R-GGLIVFHNGHKYDVPALTKL 72 (698)
T ss_dssp CEEEEEEESSCGGGCC--CE---EEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-T-TCCEEESSTTTTHHHHHHHH
T ss_pred CEEEEcCCCCcCCCCC--EE---EEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-c-CCeEEEcCChHHHHHHHHHh
Confidence 6899999999998764 33 3333332 2222222 22234777888885 2 112223344 5555666554
No 24
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=50.74 E-value=6.2 Score=29.36 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCCCCCccceeeccCCCceeEEeecceeee
Q 027707 178 RSNSEWNPVVTRQSGNDPAARLRRNLGYRG 207 (220)
Q Consensus 178 gs~S~W~p~v~~~~gn~ptvRl~i~~~~~~ 207 (220)
||-|+|++-+.+..|.--+.+|-+|.|.-+
T Consensus 1 ~~~s~W~qP~lk~~g~~KsL~Lf~P~gLt~ 30 (75)
T 2fqm_A 1 GSHMDWKQPELESDEHGKTLRLTLPEGLSG 30 (75)
T ss_dssp ----CCCCCEEEEETTEEEEEEECCSSCCH
T ss_pred CCcccccCceeecCCCCceEEEeCCCCccH
Confidence 688999988889999999999999988643
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=42.21 E-value=22 Score=34.71 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=21.3
Q ss_pred CceEEEEEeecCC---CCCCCCceeEEEEeeE
Q 027707 7 RFEIAFFDVETAF---PNPPGQRIAILEFGAI 35 (220)
Q Consensus 7 ~~e~vffDvETT~---~~~~~~~~~ilEfgAI 35 (220)
...+++||+||++ |++.. ..|+-++..
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~--d~Ii~Is~~ 163 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGT--GPILMISYA 163 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTC--SCEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCCCCCC--CcEEEEEEE
Confidence 5679999999998 66544 789988853
No 26
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=35.96 E-value=24 Score=30.98 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred HHHHHHhhCCC--CCccccchhhhccHHHHHHhhhhhh
Q 027707 52 LASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLF 87 (220)
Q Consensus 52 LatLA~~Fg~~--~~~HRALdDar~tvdVl~~~~gVl~ 87 (220)
|..||+.+|+. .+.|.|-.|+-.|..+|..+.-..+
T Consensus 209 L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 209 LQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp HHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 99999999999 7889999999999999999986554
No 27
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=30.36 E-value=32 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred HHHHHHhhCCC--CCccccchhhhccHHHHHHhhhhhh
Q 027707 52 LASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLF 87 (220)
Q Consensus 52 LatLA~~Fg~~--~~~HRALdDar~tvdVl~~~~gVl~ 87 (220)
|..||+.+|+. .+.|.|=.|+-.|..+|.++.-+.+
T Consensus 199 L~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 199 LQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp HHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 99999999998 8899999999999999999986654
No 28
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=29.16 E-value=36 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=33.2
Q ss_pred HHHHHHhhCCC--CCccccchhhhccHHHHHHhhhhhh
Q 027707 52 LASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLF 87 (220)
Q Consensus 52 LatLA~~Fg~~--~~~HRALdDar~tvdVl~~~~gVl~ 87 (220)
|..||+.+|+. .+.|.|=.|+-.|.++|.++.-+.+
T Consensus 220 L~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f 257 (333)
T 2p51_A 220 LQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 257 (333)
T ss_dssp HHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 89999999998 8889999999999999999997665
Done!