Query 027708
Match_columns 220
No_of_seqs 170 out of 1400
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 13:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01382 PfpI intracellular p 100.0 4.2E-36 9.1E-41 230.0 17.3 166 10-195 1-166 (166)
2 cd03134 GATase1_PfpI_like A ty 100.0 1.5E-35 3.3E-40 226.7 16.3 162 10-192 1-164 (165)
3 cd03135 GATase1_DJ-1 Type 1 gl 100.0 2.8E-35 6.1E-40 224.5 15.9 161 11-194 1-163 (163)
4 cd03169 GATase1_PfpI_1 Type 1 100.0 1.4E-34 3E-39 224.5 18.6 180 10-194 1-180 (180)
5 TIGR01383 not_thiJ DJ-1 family 100.0 3.9E-35 8.4E-40 227.2 14.8 169 10-199 1-172 (179)
6 cd03137 GATase1_AraC_1 AraC tr 100.0 5.4E-35 1.2E-39 227.9 14.7 168 11-199 1-176 (187)
7 cd03139 GATase1_PfpI_2 Type 1 100.0 2.7E-35 5.9E-40 228.8 11.8 173 11-205 1-180 (183)
8 cd03136 GATase1_AraC_ArgR_like 100.0 2.1E-34 4.7E-39 224.3 14.4 165 11-199 1-174 (185)
9 PRK09393 ftrA transcriptional 100.0 7.1E-34 1.5E-38 239.2 16.9 183 1-207 4-196 (322)
10 PF13278 DUF4066: Putative ami 100.0 1.1E-33 2.4E-38 216.6 14.3 158 14-192 1-166 (166)
11 cd03138 GATase1_AraC_2 AraC tr 100.0 1.9E-33 4.1E-38 220.7 15.1 169 11-201 1-187 (195)
12 cd03140 GATase1_PfpI_3 Type 1 100.0 4E-33 8.7E-38 214.3 14.4 163 11-195 1-167 (170)
13 COG4977 Transcriptional regula 100.0 6.9E-33 1.5E-37 229.1 16.0 185 8-207 10-197 (328)
14 PRK11574 oxidative-stress-resi 100.0 2.4E-32 5.3E-37 214.6 16.2 187 8-215 2-195 (196)
15 KOG2764 Putative transcription 100.0 8.6E-32 1.9E-36 207.7 15.3 173 8-200 5-179 (247)
16 cd03147 GATase1_Ydr533c_like T 100.0 6E-31 1.3E-35 210.5 16.0 178 17-194 20-231 (231)
17 cd03141 GATase1_Hsp31_like Typ 100.0 6.4E-31 1.4E-35 209.9 15.4 178 17-194 18-221 (221)
18 PRK04155 chaperone protein Hch 100.0 1.4E-30 3.1E-35 213.7 16.8 188 7-197 48-284 (287)
19 COG0693 ThiJ Putative intracel 100.0 2.7E-29 5.8E-34 196.1 18.3 176 8-198 2-186 (188)
20 cd03148 GATase1_EcHsp31_like T 100.0 2E-29 4.3E-34 201.9 14.8 177 15-194 19-231 (232)
21 PF01965 DJ-1_PfpI: DJ-1/PfpI 100.0 1.6E-28 3.4E-33 184.4 10.4 130 64-195 12-147 (147)
22 PRK11780 isoprenoid biosynthes 99.9 1.4E-26 3E-31 183.5 16.0 166 9-182 2-194 (217)
23 cd03133 GATase1_ES1 Type 1 glu 99.9 1.4E-25 3.1E-30 176.7 15.1 159 16-182 11-191 (213)
24 cd03132 GATase1_catalase Type 99.9 2.3E-23 5E-28 155.4 13.7 112 9-137 2-114 (142)
25 PRK11249 katE hydroperoxidase 99.7 7.4E-18 1.6E-22 152.6 11.5 114 8-138 597-711 (752)
26 cd01740 GATase1_FGAR_AT Type 1 99.4 2.1E-12 4.5E-17 104.3 11.2 129 11-178 1-136 (238)
27 PRK03619 phosphoribosylformylg 99.4 2.5E-12 5.5E-17 102.5 11.4 93 10-141 2-102 (219)
28 COG3155 ElbB Uncharacterized p 99.4 5.2E-12 1.1E-16 93.1 9.6 164 9-178 2-190 (217)
29 PRK01175 phosphoribosylformylg 99.3 9.7E-12 2.1E-16 101.3 11.0 98 9-139 4-110 (261)
30 TIGR01737 FGAM_synth_I phospho 99.2 1.2E-10 2.5E-15 93.5 12.1 92 10-140 2-100 (227)
31 COG0047 PurL Phosphoribosylfor 99.2 4.2E-11 9.2E-16 93.5 8.9 93 8-139 2-102 (231)
32 cd01653 GATase1 Type 1 glutami 99.0 3.8E-09 8.1E-14 73.5 10.1 91 11-131 1-92 (115)
33 PRK13526 glutamine amidotransf 99.0 1.6E-09 3.6E-14 82.9 7.1 89 9-139 3-97 (179)
34 TIGR03800 PLP_synth_Pdx2 pyrid 99.0 1.8E-09 3.9E-14 83.8 7.2 84 10-134 1-86 (184)
35 PRK13527 glutamine amidotransf 98.9 4.5E-09 9.8E-14 82.7 8.0 90 10-134 2-93 (200)
36 PF13507 GATase_5: CobB/CobQ-l 98.9 3.8E-09 8.3E-14 85.9 5.5 99 9-140 2-112 (259)
37 cd03128 GAT_1 Type 1 glutamine 98.8 3.5E-08 7.6E-13 65.5 8.3 91 11-131 1-92 (92)
38 PRK13525 glutamine amidotransf 98.8 4.8E-08 1E-12 76.2 8.5 85 9-134 2-88 (189)
39 PLN02832 glutamine amidotransf 98.6 1.6E-07 3.4E-12 75.8 7.3 85 9-134 2-88 (248)
40 cd03130 GATase1_CobB Type 1 gl 98.5 6E-07 1.3E-11 70.6 8.9 77 24-135 13-92 (198)
41 PRK08250 glutamine amidotransf 98.5 1.7E-06 3.6E-11 69.9 11.1 92 10-134 2-100 (235)
42 cd01750 GATase1_CobQ Type 1 gl 98.5 6.5E-07 1.4E-11 70.1 7.6 86 11-135 1-89 (194)
43 PRK13143 hisH imidazole glycer 98.5 6.7E-07 1.5E-11 70.4 7.6 85 10-134 2-87 (200)
44 PRK07053 glutamine amidotransf 98.4 3.5E-06 7.7E-11 67.9 11.6 94 8-134 2-99 (234)
45 cd01749 GATase1_PB Glutamine A 98.4 5.6E-07 1.2E-11 69.9 5.9 83 11-134 1-85 (183)
46 TIGR01857 FGAM-synthase phosph 98.4 2.1E-06 4.5E-11 82.8 10.6 106 8-140 977-1096(1239)
47 PLN03206 phosphoribosylformylg 98.3 3.7E-06 8E-11 81.7 10.9 101 8-141 1037-1149(1307)
48 COG0311 PDX2 Predicted glutami 98.3 1.6E-06 3.4E-11 66.0 5.8 84 9-133 1-87 (194)
49 CHL00188 hisH imidazole glycer 98.3 3E-06 6.5E-11 67.1 7.3 94 9-142 2-107 (210)
50 cd01741 GATase1_1 Subgroup of 98.3 9.1E-06 2E-10 63.2 9.7 91 10-134 1-97 (188)
51 TIGR01735 FGAM_synt phosphorib 98.3 5.3E-06 1.1E-10 81.0 10.0 99 8-140 1055-1167(1310)
52 PRK05297 phosphoribosylformylg 98.3 7.8E-06 1.7E-10 79.9 10.9 99 8-139 1035-1146(1290)
53 PRK01077 cobyrinic acid a,c-di 98.2 9.2E-06 2E-10 71.7 10.2 90 9-134 246-338 (451)
54 PRK06490 glutamine amidotransf 98.2 1.9E-05 4.1E-10 63.8 11.1 94 8-134 7-102 (239)
55 PHA03366 FGAM-synthase; Provis 98.1 1.8E-05 4E-10 77.4 10.8 97 8-138 1028-1137(1304)
56 cd01748 GATase1_IGP_Synthase T 98.1 6.6E-06 1.4E-10 64.6 6.3 75 23-134 10-87 (198)
57 PRK06895 putative anthranilate 98.1 1.6E-05 3.6E-10 62.0 8.4 87 9-134 2-88 (190)
58 PRK13141 hisH imidazole glycer 98.1 7.3E-06 1.6E-10 64.7 6.3 84 11-134 2-88 (205)
59 PRK13146 hisH imidazole glycer 98.1 1.6E-05 3.4E-10 63.1 7.5 87 9-135 2-94 (209)
60 TIGR01739 tegu_FGAM_synt herpe 98.1 2.8E-05 6E-10 75.7 10.3 98 8-139 929-1039(1202)
61 cd01744 GATase1_CPSase Small c 98.0 2.2E-05 4.8E-10 60.6 7.5 48 85-134 38-85 (178)
62 PRK09065 glutamine amidotransf 98.0 6.2E-05 1.3E-09 60.8 9.7 50 85-134 53-104 (237)
63 PRK05665 amidotransferase; Pro 98.0 0.00012 2.6E-09 59.2 11.0 50 85-134 56-107 (240)
64 PF07685 GATase_3: CobB/CobQ-l 97.9 1.3E-05 2.9E-10 60.6 3.9 52 84-135 5-59 (158)
65 TIGR00888 guaA_Nterm GMP synth 97.9 6.4E-05 1.4E-09 58.5 7.3 77 23-134 10-86 (188)
66 PF01174 SNO: SNO glutamine am 97.8 2.6E-05 5.7E-10 59.8 4.7 61 86-146 33-102 (188)
67 TIGR00379 cobB cobyrinic acid 97.8 0.00011 2.3E-09 64.9 9.1 90 9-134 245-337 (449)
68 PRK13170 hisH imidazole glycer 97.8 6.4E-05 1.4E-09 59.0 6.3 82 10-134 2-86 (196)
69 PRK00784 cobyric acid synthase 97.8 8.6E-05 1.9E-09 66.2 7.5 50 85-134 289-341 (488)
70 PRK07567 glutamine amidotransf 97.8 0.00016 3.5E-09 58.6 8.5 50 85-134 50-109 (242)
71 PRK08007 para-aminobenzoate sy 97.8 9.1E-05 2E-09 57.7 6.7 87 13-134 2-88 (187)
72 PRK13181 hisH imidazole glycer 97.7 7E-05 1.5E-09 58.9 6.0 49 86-134 37-88 (199)
73 PRK07765 para-aminobenzoate sy 97.7 0.00014 3.1E-09 57.8 7.8 48 85-134 45-92 (214)
74 TIGR01855 IMP_synth_hisH imida 97.7 0.00011 2.4E-09 57.6 7.1 74 23-134 10-87 (196)
75 PRK06774 para-aminobenzoate sy 97.7 9.6E-05 2.1E-09 57.7 6.6 86 13-134 2-88 (191)
76 COG0518 GuaA GMP synthase - Gl 97.7 0.00043 9.2E-09 54.3 10.2 50 85-134 44-95 (198)
77 COG0118 HisH Glutamine amidotr 97.7 0.00012 2.6E-09 56.8 6.2 86 9-134 2-90 (204)
78 TIGR00566 trpG_papA glutamine 97.7 0.0002 4.2E-09 55.8 7.4 46 86-134 43-88 (188)
79 PLN02617 imidazole glycerol ph 97.7 0.00028 6E-09 63.4 9.1 87 8-134 6-95 (538)
80 cd01742 GATase1_GMP_Synthase T 97.6 0.00037 7.9E-09 53.8 8.1 76 24-134 11-86 (181)
81 PRK05670 anthranilate synthase 97.5 0.00038 8.2E-09 54.2 7.4 87 13-134 2-88 (189)
82 PRK12564 carbamoyl phosphate s 97.5 0.00047 1E-08 59.0 8.4 87 9-134 178-264 (360)
83 PRK05637 anthranilate synthase 97.5 0.00057 1.2E-08 54.1 7.5 87 9-134 2-89 (208)
84 PRK08857 para-aminobenzoate sy 97.5 0.00049 1.1E-08 53.8 7.0 87 13-134 2-88 (193)
85 CHL00101 trpG anthranilate syn 97.4 0.00043 9.3E-09 54.0 6.6 46 86-134 43-88 (190)
86 PRK07649 para-aminobenzoate/an 97.4 0.0005 1.1E-08 53.9 6.7 87 13-134 2-88 (195)
87 CHL00197 carA carbamoyl-phosph 97.4 0.0011 2.3E-08 57.1 8.9 87 9-134 193-279 (382)
88 PRK13152 hisH imidazole glycer 97.4 0.00059 1.3E-08 53.7 6.9 48 86-134 37-89 (201)
89 PLN02335 anthranilate synthase 97.4 0.00083 1.8E-08 53.7 7.8 90 8-134 18-107 (222)
90 cd01743 GATase1_Anthranilate_S 97.4 0.0013 2.9E-08 50.9 8.3 47 85-134 41-87 (184)
91 PRK13566 anthranilate synthase 97.3 0.0013 2.9E-08 61.1 9.5 89 8-134 526-614 (720)
92 PRK00758 GMP synthase subunit 97.3 0.00088 1.9E-08 51.9 7.0 43 86-134 40-83 (184)
93 PRK13142 hisH imidazole glycer 97.3 0.00056 1.2E-08 53.4 5.7 82 11-134 2-86 (192)
94 PRK13896 cobyrinic acid a,c-di 97.3 0.00068 1.5E-08 59.4 6.9 49 85-134 273-324 (433)
95 TIGR01368 CPSaseIIsmall carbam 97.3 0.0012 2.6E-08 56.4 7.9 86 9-134 174-259 (358)
96 PRK14004 hisH imidazole glycer 97.3 0.00086 1.9E-08 53.2 6.5 48 86-134 37-88 (210)
97 cd01745 GATase1_2 Subgroup of 97.2 0.00046 1E-08 53.8 4.6 50 85-134 52-116 (189)
98 PF00117 GATase: Glutamine ami 97.2 0.00049 1.1E-08 53.5 4.7 79 24-134 10-88 (192)
99 COG1797 CobB Cobyrinic acid a, 97.2 0.00093 2E-08 57.7 6.4 91 9-134 246-339 (451)
100 cd03146 GAT1_Peptidase_E Type 97.2 0.00096 2.1E-08 53.0 5.9 50 85-134 79-130 (212)
101 TIGR01815 TrpE-clade3 anthrani 97.2 0.0031 6.8E-08 58.6 9.7 89 8-134 516-604 (717)
102 PRK06278 cobyrinic acid a,c-di 97.2 0.00078 1.7E-08 59.6 5.6 45 85-134 35-81 (476)
103 cd03144 GATase1_ScBLP_like Typ 97.1 0.00099 2.1E-08 47.4 5.1 45 85-131 43-90 (114)
104 TIGR00313 cobQ cobyric acid sy 97.1 0.0013 2.8E-08 58.6 6.5 49 85-133 283-334 (475)
105 PRK05282 (alpha)-aspartyl dipe 97.1 0.0019 4.1E-08 51.9 6.5 51 85-135 78-130 (233)
106 PRK12838 carbamoyl phosphate s 97.0 0.0016 3.6E-08 55.5 6.4 47 85-134 207-253 (354)
107 cd01746 GATase1_CTP_Synthase T 96.7 0.0036 7.8E-08 50.5 5.6 46 85-133 54-99 (235)
108 PF09825 BPL_N: Biotin-protein 96.7 0.0088 1.9E-07 51.2 8.0 92 10-133 2-97 (367)
109 KOG3210 Imidazoleglycerol-phos 96.6 0.0042 9.2E-08 46.7 5.0 49 85-133 55-106 (226)
110 PLN02347 GMP synthetase 96.6 0.012 2.7E-07 53.0 8.5 49 86-134 53-102 (536)
111 PLN02771 carbamoyl-phosphate s 96.5 0.0093 2E-07 51.8 7.0 46 86-134 281-326 (415)
112 COG0512 PabA Anthranilate/para 96.5 0.016 3.6E-07 44.7 7.4 98 14-146 5-111 (191)
113 PRK11366 puuD gamma-glutamyl-g 96.5 0.0039 8.5E-08 50.9 4.3 49 86-134 61-123 (254)
114 PRK09522 bifunctional glutamin 96.2 0.013 2.9E-07 52.8 6.7 78 25-134 15-93 (531)
115 PRK14607 bifunctional glutamin 96.2 0.013 2.8E-07 53.0 6.6 46 86-134 44-89 (534)
116 PRK00074 guaA GMP synthase; Re 96.2 0.029 6.3E-07 50.5 8.7 88 9-134 4-91 (511)
117 PRK05380 pyrG CTP synthetase; 95.9 0.014 3.1E-07 52.1 5.3 46 85-133 342-387 (533)
118 COG2071 Predicted glutamine am 95.9 0.018 3.8E-07 46.1 5.1 49 85-133 59-122 (243)
119 PRK06186 hypothetical protein; 95.8 0.018 3.9E-07 46.1 4.9 44 84-130 51-94 (229)
120 cd03129 GAT1_Peptidase_E_like 95.7 0.033 7.1E-07 44.0 6.2 50 85-134 79-130 (210)
121 cd01747 GATase1_Glutamyl_Hydro 95.2 0.028 6E-07 46.4 4.2 49 85-133 53-107 (273)
122 COG0505 CarA Carbamoylphosphat 95.2 0.059 1.3E-06 45.6 6.1 55 78-134 212-266 (368)
123 COG3442 Predicted glutamine am 95.0 0.023 5.1E-07 44.7 3.0 50 85-134 51-103 (250)
124 COG1492 CobQ Cobyric acid synt 95.0 0.077 1.7E-06 46.8 6.5 49 86-134 290-341 (486)
125 PLN02327 CTP synthase 94.8 0.058 1.3E-06 48.5 5.4 46 84-132 360-405 (557)
126 TIGR00337 PyrG CTP synthase. C 94.7 0.057 1.2E-06 48.3 5.1 45 85-132 342-386 (525)
127 PF13587 DJ-1_PfpI_N: N-termin 94.6 0.055 1.2E-06 30.5 3.2 27 9-35 1-38 (38)
128 KOG3179 Predicted glutamine sy 94.5 0.45 9.7E-06 37.3 8.9 50 84-134 57-109 (245)
129 PRK05368 homoserine O-succinyl 94.4 0.084 1.8E-06 44.1 5.2 54 78-134 91-151 (302)
130 TIGR02069 cyanophycinase cyano 94.0 0.18 4E-06 41.0 6.3 49 85-133 81-131 (250)
131 PF07722 Peptidase_C26: Peptid 93.4 0.054 1.2E-06 43.1 2.3 49 85-133 57-121 (217)
132 TIGR01823 PabB-fungal aminodeo 93.4 0.14 3E-06 48.2 5.1 47 85-134 52-102 (742)
133 PF03575 Peptidase_S51: Peptid 93.1 0.027 5.9E-07 42.3 0.1 49 86-134 35-85 (154)
134 PLN02889 oxo-acid-lyase/anthra 93.0 0.37 8E-06 46.2 7.4 47 86-134 131-178 (918)
135 KOG1907 Phosphoribosylformylgl 92.7 0.55 1.2E-05 44.4 7.8 105 9-147 1059-1175(1320)
136 KOG0370 Multifunctional pyrimi 92.6 0.27 5.9E-06 46.7 5.7 47 86-134 210-256 (1435)
137 cd03145 GAT1_cyanophycinase Ty 92.0 0.19 4.1E-06 40.0 3.6 50 85-134 82-133 (217)
138 COG0504 PyrG CTP synthase (UTP 91.9 0.38 8.3E-06 42.5 5.5 42 87-131 344-385 (533)
139 cd03131 GATase1_HTS Type 1 glu 91.0 0.21 4.5E-06 38.4 2.7 54 78-132 54-112 (175)
140 KOG2764 Putative transcription 90.9 0.16 3.5E-06 40.4 2.0 55 41-96 193-247 (247)
141 PF09822 ABC_transp_aux: ABC-t 89.6 7.4 0.00016 31.8 11.1 72 84-162 195-267 (271)
142 COG4285 Uncharacterized conser 89.3 2.9 6.3E-05 33.2 7.7 89 10-130 2-94 (253)
143 PRK02645 ppnK inorganic polyph 89.2 4.1 8.9E-05 34.2 9.3 87 8-128 3-92 (305)
144 COG4635 HemG Flavodoxin [Energ 89.0 2 4.3E-05 32.4 6.4 45 83-129 44-90 (175)
145 COG3340 PepE Peptidase E [Amin 88.7 0.51 1.1E-05 37.3 3.3 51 85-135 83-135 (224)
146 PRK01231 ppnK inorganic polyph 87.2 6.5 0.00014 32.9 9.2 95 1-129 1-97 (295)
147 KOG2387 CTP synthase (UTP-ammo 85.8 1.6 3.4E-05 38.3 4.9 43 86-131 363-405 (585)
148 PRK11104 hemG protoporphyrinog 84.6 9.5 0.00021 29.2 8.4 41 85-127 45-87 (177)
149 PRK02155 ppnK NAD(+)/NADH kina 84.4 10 0.00022 31.6 9.1 91 8-128 5-97 (291)
150 PF08532 Glyco_hydro_42M: Beta 82.7 5.7 0.00012 31.2 6.6 60 22-123 30-89 (207)
151 KOG0623 Glutamine amidotransfe 82.2 2.2 4.8E-05 36.1 4.2 48 86-133 39-89 (541)
152 cd03143 A4_beta-galactosidase_ 81.9 13 0.00027 27.5 8.0 62 22-125 26-87 (154)
153 PRK03378 ppnK inorganic polyph 80.4 25 0.00054 29.4 9.9 91 8-128 5-97 (292)
154 PF03698 UPF0180: Uncharacteri 80.2 7 0.00015 25.9 5.2 27 9-42 2-28 (80)
155 PRK04539 ppnK inorganic polyph 79.8 28 0.00061 29.1 10.0 94 8-128 5-102 (296)
156 PRK03708 ppnK inorganic polyph 79.0 21 0.00045 29.6 9.0 87 10-128 2-90 (277)
157 KOG0026 Anthranilate synthase, 78.5 14 0.00031 28.1 7.0 66 80-148 57-132 (223)
158 PRK03372 ppnK inorganic polyph 77.3 23 0.0005 29.8 8.8 36 86-129 72-107 (306)
159 PRK06455 riboflavin synthase; 76.0 7.6 0.00016 29.2 5.0 91 9-124 2-97 (155)
160 PRK03094 hypothetical protein; 75.3 12 0.00027 24.7 5.3 21 21-41 7-27 (80)
161 COG1058 CinA Predicted nucleot 73.3 9.7 0.00021 31.1 5.4 84 9-117 2-106 (255)
162 PRK00286 xseA exodeoxyribonucl 70.4 9.6 0.00021 33.6 5.2 56 87-147 193-253 (438)
163 COG4242 CphB Cyanophycinase an 70.2 5.4 0.00012 32.4 3.2 49 85-133 105-155 (293)
164 PRK02649 ppnK inorganic polyph 69.1 55 0.0012 27.5 9.2 36 86-129 68-103 (305)
165 PF12682 Flavodoxin_4: Flavodo 69.0 2 4.3E-05 32.3 0.6 42 83-126 70-111 (156)
166 PRK05568 flavodoxin; Provision 66.9 45 0.00097 24.0 9.1 42 85-126 47-90 (142)
167 PRK01911 ppnK inorganic polyph 66.9 60 0.0013 27.1 9.0 36 86-129 64-99 (292)
168 PRK03767 NAD(P)H:quinone oxido 66.9 42 0.00092 26.0 7.8 130 9-163 2-144 (200)
169 PRK09271 flavodoxin; Provision 65.2 55 0.0012 24.4 8.6 43 85-127 50-94 (160)
170 PRK06756 flavodoxin; Provision 65.1 51 0.0011 24.0 8.3 87 9-128 2-93 (148)
171 KOG1224 Para-aminobenzoate (PA 64.7 15 0.00032 33.3 5.1 45 85-132 63-109 (767)
172 PRK14077 pnk inorganic polypho 63.5 66 0.0014 26.8 8.6 88 8-128 10-98 (287)
173 PRK06249 2-dehydropantoate 2-r 61.9 36 0.00078 28.4 6.9 39 85-128 71-109 (313)
174 PF09897 DUF2124: Uncharacteri 60.2 25 0.00055 26.1 4.9 109 8-136 19-128 (147)
175 cd05014 SIS_Kpsf KpsF-like pro 59.1 28 0.00061 24.5 5.1 39 85-128 46-84 (128)
176 KOG1622 GMP synthase [Nucleoti 58.8 8 0.00017 34.1 2.4 48 80-134 53-104 (552)
177 PF12724 Flavodoxin_5: Flavodo 58.3 15 0.00033 26.8 3.6 44 83-128 40-85 (143)
178 PRK06934 flavodoxin; Provision 57.9 9.6 0.00021 30.5 2.6 42 84-127 127-168 (221)
179 PRK13054 lipid kinase; Reviewe 56.7 19 0.0004 30.0 4.3 36 8-43 3-39 (300)
180 TIGR01754 flav_RNR ribonucleot 56.1 21 0.00045 25.9 4.0 41 85-127 49-90 (140)
181 cd01481 vWA_collagen_alpha3-VI 55.9 33 0.00071 25.8 5.2 36 9-44 107-142 (165)
182 PRK11914 diacylglycerol kinase 54.9 31 0.00067 28.7 5.4 36 8-43 8-47 (306)
183 PLN02204 diacylglycerol kinase 54.8 20 0.00043 33.1 4.3 68 8-98 159-230 (601)
184 PF01058 Oxidored_q6: NADH ubi 54.7 13 0.00028 27.0 2.7 42 85-130 44-85 (131)
185 COG1570 XseA Exonuclease VII, 53.7 31 0.00067 30.5 5.2 58 85-147 192-254 (440)
186 cd02067 B12-binding B12 bindin 53.7 37 0.0008 23.7 4.9 28 16-43 8-35 (119)
187 PRK14817 NADH dehydrogenase su 52.7 30 0.00065 26.7 4.4 40 83-126 72-111 (181)
188 PRK03670 competence damage-ind 52.5 38 0.00082 27.6 5.3 84 10-117 2-106 (252)
189 PRK06411 NADH dehydrogenase su 52.1 31 0.00067 26.7 4.4 40 83-126 71-110 (183)
190 PRK06703 flavodoxin; Provision 52.0 49 0.0011 24.2 5.5 43 85-127 47-91 (151)
191 PRK04761 ppnK inorganic polyph 51.8 29 0.00062 28.3 4.5 38 83-128 22-59 (246)
192 PF09558 DUF2375: Protein of u 50.7 13 0.00027 23.6 1.7 17 113-129 41-57 (71)
193 PRK05569 flavodoxin; Provision 49.1 97 0.0021 22.2 8.4 43 85-127 47-92 (141)
194 PF00885 DMRL_synthase: 6,7-di 49.0 25 0.00055 26.0 3.5 90 8-122 3-103 (144)
195 cd02070 corrinoid_protein_B12- 48.8 27 0.00058 27.2 3.8 35 9-43 83-118 (201)
196 PRK02261 methylaspartate mutas 47.1 52 0.0011 24.0 4.9 37 8-44 3-40 (137)
197 TIGR02922 conserved hypothetic 46.9 15 0.00033 22.9 1.7 16 114-129 40-55 (67)
198 PF04204 HTS: Homoserine O-suc 46.8 20 0.00044 30.0 2.9 53 78-130 90-146 (298)
199 PRK01215 competence damage-ind 46.7 52 0.0011 27.0 5.3 85 8-117 3-108 (264)
200 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.5 60 0.0013 22.6 5.1 39 85-128 45-83 (126)
201 PF12641 Flavodoxin_3: Flavodo 46.2 31 0.00066 26.1 3.6 39 84-126 37-75 (160)
202 PF03853 YjeF_N: YjeF-related 45.7 23 0.00051 26.8 2.9 35 8-42 25-59 (169)
203 PLN02727 NAD kinase 45.5 1.2E+02 0.0027 29.7 8.0 37 85-129 742-778 (986)
204 TIGR02990 ectoine_eutA ectoine 44.9 90 0.0019 25.2 6.3 101 8-135 120-225 (239)
205 cd02071 MM_CoA_mut_B12_BD meth 44.8 32 0.0007 24.4 3.4 28 17-44 9-36 (122)
206 TIGR03294 FrhG coenzyme F420 h 44.4 49 0.0011 26.5 4.7 38 85-126 49-86 (228)
207 PRK14820 NADH dehydrogenase su 44.3 49 0.0011 25.6 4.4 40 83-126 70-109 (180)
208 PF13580 SIS_2: SIS domain; PD 44.3 46 0.00099 24.1 4.2 36 84-124 101-136 (138)
209 PF06283 ThuA: Trehalose utili 43.6 67 0.0015 25.1 5.4 41 85-128 51-91 (217)
210 cd02774 MopB_Res-Cmplx1_Nad11- 43.3 2E+02 0.0042 24.9 8.5 97 9-126 88-186 (366)
211 cd04795 SIS SIS domain. SIS (S 43.2 72 0.0016 20.3 4.8 35 86-125 47-81 (87)
212 PRK06975 bifunctional uroporph 42.7 1.1E+02 0.0024 28.7 7.4 98 8-137 3-101 (656)
213 TIGR02370 pyl_corrinoid methyl 42.7 60 0.0013 25.2 4.9 36 9-44 85-121 (197)
214 TIGR01957 nuoB_fam NADH-quinon 42.0 41 0.00088 25.0 3.6 40 83-126 54-93 (145)
215 cd06305 PBP1_methylthioribose_ 41.9 50 0.0011 26.2 4.6 34 10-43 1-37 (273)
216 PRK14075 pnk inorganic polypho 41.6 1.9E+02 0.0042 23.5 8.1 32 86-128 41-72 (256)
217 TIGR00441 gmhA phosphoheptose 41.4 81 0.0017 23.3 5.3 37 85-126 78-114 (154)
218 COG2242 CobL Precorrin-6B meth 41.3 66 0.0014 25.0 4.8 37 86-128 102-138 (187)
219 PRK14076 pnk inorganic polypho 41.3 2E+02 0.0044 26.4 8.8 36 86-129 348-383 (569)
220 PRK08040 putative semialdehyde 41.2 1.6E+02 0.0036 25.1 7.6 92 9-124 5-96 (336)
221 cd01475 vWA_Matrilin VWA_Matri 40.6 71 0.0015 25.1 5.1 35 9-43 109-143 (224)
222 COG4126 Hydantoin racemase [Am 40.4 59 0.0013 26.0 4.4 57 84-153 67-126 (230)
223 PRK06242 flavodoxin; Provision 40.3 54 0.0012 23.8 4.1 42 85-128 42-84 (150)
224 COG0452 Dfp Phosphopantothenoy 40.3 82 0.0018 27.5 5.8 38 8-45 4-41 (392)
225 PLN02935 Bifunctional NADH kin 40.2 2.6E+02 0.0057 25.4 8.9 36 86-129 262-297 (508)
226 cd05710 SIS_1 A subgroup of th 39.4 78 0.0017 22.2 4.7 38 86-128 47-84 (120)
227 TIGR01001 metA homoserine O-su 39.3 23 0.00051 29.6 2.2 53 78-130 91-147 (300)
228 cd00587 HCP_like The HCP famil 39.1 95 0.002 25.5 5.6 51 87-139 95-145 (258)
229 PRK13055 putative lipid kinase 39.1 45 0.00097 28.3 3.9 35 9-43 3-41 (334)
230 cd01473 vWA_CTRP CTRP for CS 39.0 71 0.0015 24.6 4.8 36 9-44 109-148 (192)
231 TIGR00147 lipid kinase, YegS/R 39.0 49 0.0011 27.2 4.1 36 9-44 2-41 (293)
232 PF01975 SurE: Survival protei 38.9 70 0.0015 25.0 4.7 37 10-46 2-38 (196)
233 COG4090 Uncharacterized protei 38.5 99 0.0021 22.6 4.9 49 85-136 84-133 (154)
234 cd03142 GATase1_ThuA Type 1 gl 38.4 1.9E+02 0.0041 23.0 7.1 43 84-128 56-98 (215)
235 PF02441 Flavoprotein: Flavopr 38.2 82 0.0018 22.4 4.7 35 9-43 1-35 (129)
236 cd05017 SIS_PGI_PMI_1 The memb 38.0 88 0.0019 21.8 4.8 37 85-126 42-78 (119)
237 TIGR03127 RuMP_HxlB 6-phospho 38.0 86 0.0019 23.6 5.1 38 85-127 71-108 (179)
238 PRK00561 ppnK inorganic polyph 37.4 54 0.0012 26.9 4.0 36 85-128 32-67 (259)
239 PRK14814 NADH dehydrogenase su 36.9 64 0.0014 25.1 4.1 40 83-126 70-109 (186)
240 COG1941 FrhG Coenzyme F420-red 36.7 79 0.0017 25.6 4.7 38 85-128 50-87 (247)
241 cd01482 vWA_collagen_alphaI-XI 36.5 1.1E+02 0.0024 22.5 5.4 37 8-44 103-139 (164)
242 PRK12419 riboflavin synthase s 36.5 56 0.0012 24.7 3.6 36 8-43 10-51 (158)
243 PRK01045 ispH 4-hydroxy-3-meth 36.4 56 0.0012 27.4 4.0 27 9-35 156-182 (298)
244 PRK14815 NADH dehydrogenase su 36.2 69 0.0015 24.8 4.1 40 83-126 70-109 (183)
245 PRK00414 gmhA phosphoheptose i 36.2 82 0.0018 24.4 4.7 38 85-127 110-147 (192)
246 PF02601 Exonuc_VII_L: Exonucl 36.0 73 0.0016 26.7 4.7 40 86-128 75-118 (319)
247 PF02310 B12-binding: B12 bind 35.9 30 0.00065 24.0 2.1 34 10-43 2-36 (121)
248 PRK10333 5-formyltetrahydrofol 35.8 2E+02 0.0043 22.0 8.0 84 8-95 34-118 (182)
249 PRK08811 uroporphyrinogen-III 35.5 1.3E+02 0.0028 24.6 6.0 98 7-137 17-115 (266)
250 PF10034 Dpy19: Q-cell neurobl 35.5 18 0.0004 33.7 1.1 45 103-150 504-548 (642)
251 PF11823 DUF3343: Protein of u 35.3 90 0.002 19.8 4.1 30 12-43 4-33 (73)
252 KOG4435 Predicted lipid kinase 34.9 20 0.00043 31.3 1.1 37 8-44 60-101 (535)
253 PRK13337 putative lipid kinase 34.7 58 0.0012 27.1 3.9 36 9-44 2-41 (304)
254 PRK14816 NADH dehydrogenase su 34.7 84 0.0018 24.3 4.4 40 83-126 78-117 (182)
255 TIGR02336 1,3-beta-galactosyl- 34.5 1.6E+02 0.0034 27.8 6.7 76 21-128 467-546 (719)
256 COG0061 nadF NAD kinase [Coenz 34.4 2.7E+02 0.0058 23.0 8.3 36 85-128 54-89 (281)
257 TIGR00685 T6PP trehalose-phosp 34.1 58 0.0013 26.0 3.7 43 86-128 9-51 (244)
258 PRK01372 ddl D-alanine--D-alan 34.0 1.7E+02 0.0037 24.0 6.7 37 8-44 4-45 (304)
259 PRK10355 xylF D-xylose transpo 33.8 1E+02 0.0023 25.8 5.4 37 8-44 25-64 (330)
260 cd06318 PBP1_ABC_sugar_binding 33.7 62 0.0013 25.8 3.9 34 10-43 1-37 (282)
261 cd05006 SIS_GmhA Phosphoheptos 33.7 99 0.0021 23.3 4.8 38 85-127 100-137 (177)
262 cd01472 vWA_collagen von Wille 33.7 1.2E+02 0.0026 22.3 5.2 37 8-44 103-139 (164)
263 COG3075 GlpB Anaerobic glycero 33.5 73 0.0016 27.4 4.2 101 8-115 138-241 (421)
264 COG0062 Uncharacterized conser 33.4 2.4E+02 0.0052 22.2 7.5 118 9-139 50-172 (203)
265 COG1105 FruK Fructose-1-phosph 33.1 1.4E+02 0.003 25.3 5.8 47 84-132 127-173 (310)
266 PRK00061 ribH 6,7-dimethyl-8-r 33.1 93 0.002 23.3 4.4 90 8-122 12-112 (154)
267 COG1832 Predicted CoA-binding 32.9 2E+02 0.0044 21.2 8.3 83 8-119 16-98 (140)
268 cd01538 PBP1_ABC_xylose_bindin 32.5 75 0.0016 25.7 4.2 35 10-44 1-38 (288)
269 PF12646 DUF3783: Domain of un 32.1 70 0.0015 19.5 3.0 25 13-37 3-27 (58)
270 PRK13932 stationary phase surv 32.1 1.9E+02 0.0042 23.7 6.4 37 9-46 6-42 (257)
271 PF01380 SIS: SIS domain SIS d 31.9 1E+02 0.0022 21.4 4.4 37 86-127 53-89 (131)
272 PRK13937 phosphoheptose isomer 31.9 1.1E+02 0.0024 23.5 4.8 36 86-126 106-141 (188)
273 PRK09130 NADH dehydrogenase su 31.1 2E+02 0.0043 27.2 7.1 97 9-127 306-403 (687)
274 PF11760 CbiG_N: Cobalamin syn 31.1 1.1E+02 0.0024 20.5 4.0 71 108-199 2-78 (84)
275 TIGR02727 MTHFS_bact 5,10-meth 30.9 2.4E+02 0.0051 21.4 7.9 32 8-40 40-71 (181)
276 PRK13934 stationary phase surv 30.7 2.3E+02 0.0051 23.3 6.6 36 10-46 2-37 (266)
277 PRK13938 phosphoheptose isomer 30.3 1.3E+02 0.0028 23.5 5.0 39 84-127 111-149 (196)
278 cd00885 cinA Competence-damage 30.3 89 0.0019 23.7 4.0 34 86-119 58-106 (170)
279 PF02202 Tachykinin: Tachykini 30.2 19 0.00041 14.5 0.1 9 211-219 3-11 (11)
280 cd05005 SIS_PHI Hexulose-6-pho 29.2 1.3E+02 0.0029 22.6 4.8 37 85-126 74-110 (179)
281 COG0337 AroB 3-dehydroquinate 28.6 1.9E+02 0.0041 25.0 6.0 42 88-129 64-106 (360)
282 cd00363 PFK Phosphofructokinas 28.3 1.4E+02 0.003 25.5 5.2 66 90-163 5-70 (338)
283 cd02069 methionine_synthase_B1 28.2 1.5E+02 0.0032 23.4 5.0 36 9-44 89-125 (213)
284 PRK03673 hypothetical protein; 28.1 85 0.0018 27.5 3.9 84 9-117 2-106 (396)
285 cd06312 PBP1_ABC_sugar_binding 28.1 1.2E+02 0.0026 24.0 4.7 85 10-126 1-90 (271)
286 PF09508 Lact_bio_phlase: Lact 28.0 1.9E+02 0.0041 27.2 6.1 89 8-128 435-543 (716)
287 TIGR00237 xseA exodeoxyribonuc 27.9 1.4E+02 0.003 26.5 5.3 57 86-147 187-248 (432)
288 PF12500 TRSP: TRSP domain C t 27.8 2.7E+02 0.0058 21.0 6.5 39 8-47 57-95 (155)
289 cd08195 DHQS Dehydroquinate sy 27.7 1.6E+02 0.0034 25.1 5.4 38 85-128 84-121 (345)
290 COG1587 HemD Uroporphyrinogen- 27.7 1.5E+02 0.0033 23.7 5.2 97 9-137 2-99 (248)
291 COG3233 Predicted deacetylase 27.6 1.3E+02 0.0029 24.1 4.5 35 89-123 38-72 (233)
292 PRK14652 UDP-N-acetylenolpyruv 27.6 2.7E+02 0.0058 23.3 6.7 73 103-192 44-116 (302)
293 PF06792 UPF0261: Uncharacteri 27.5 1.2E+02 0.0025 26.7 4.6 36 9-44 2-37 (403)
294 cd02065 B12-binding_like B12 b 27.4 1.3E+02 0.0029 20.7 4.3 33 12-44 4-36 (125)
295 PLN02958 diacylglycerol kinase 27.3 1.1E+02 0.0024 27.5 4.6 37 8-44 111-152 (481)
296 TIGR00216 ispH_lytB (E)-4-hydr 26.9 86 0.0019 26.1 3.6 28 8-35 153-180 (280)
297 PRK12360 4-hydroxy-3-methylbut 26.8 1.2E+02 0.0027 25.2 4.4 29 9-37 157-185 (281)
298 cd06310 PBP1_ABC_sugar_binding 26.6 1.1E+02 0.0023 24.3 4.1 34 10-43 1-37 (273)
299 PRK10886 DnaA initiator-associ 26.4 1.6E+02 0.0034 23.0 4.8 38 85-127 108-145 (196)
300 PRK13936 phosphoheptose isomer 25.8 1.6E+02 0.0035 22.8 4.8 36 86-126 111-146 (197)
301 PRK13059 putative lipid kinase 25.6 1.2E+02 0.0026 25.1 4.3 35 9-43 2-40 (295)
302 COG4007 Predicted dehydrogenas 25.1 69 0.0015 26.5 2.6 89 26-131 35-123 (340)
303 CHL00023 ndhK NADH dehydrogena 25.1 1.6E+02 0.0034 23.7 4.5 40 83-126 68-107 (225)
304 COG1184 GCD2 Translation initi 25.1 2.4E+02 0.0051 23.8 5.8 41 85-126 186-229 (301)
305 TIGR03521 GldG gliding-associa 24.9 5.4E+02 0.012 23.6 9.9 34 86-123 234-267 (552)
306 cd00860 ThrRS_anticodon ThrRS 24.6 1.6E+02 0.0034 18.9 4.0 33 9-41 2-34 (91)
307 PRK02231 ppnK inorganic polyph 24.6 1.1E+02 0.0025 25.2 3.9 35 86-128 42-76 (272)
308 COG5441 Uncharacterized conser 24.5 2E+02 0.0043 24.4 5.1 34 8-41 2-35 (401)
309 PRK14819 NADH dehydrogenase su 24.2 1.5E+02 0.0034 24.2 4.4 39 84-126 69-107 (264)
310 COG0394 Wzb Protein-tyrosine-p 24.1 1.5E+02 0.0033 21.7 4.1 77 8-94 2-84 (139)
311 PRK15482 transcriptional regul 23.6 1.7E+02 0.0037 23.9 4.8 38 86-128 182-219 (285)
312 PRK05671 aspartate-semialdehyd 23.6 4.1E+02 0.0089 22.6 7.2 93 1-125 1-97 (336)
313 PRK10653 D-ribose transporter 23.4 1.9E+02 0.0042 23.3 5.1 36 8-43 26-64 (295)
314 COG0205 PfkA 6-phosphofructoki 23.4 3.3E+02 0.0072 23.4 6.5 64 90-161 7-70 (347)
315 PF01513 NAD_kinase: ATP-NAD k 23.2 76 0.0016 26.2 2.6 37 84-128 74-110 (285)
316 PRK09444 pntB pyridine nucleot 23.1 1.7E+02 0.0036 26.2 4.7 66 22-97 324-392 (462)
317 PRK00549 competence damage-ind 23.0 1.3E+02 0.0029 26.4 4.2 83 10-117 2-105 (414)
318 cd00763 Bacterial_PFK Phosphof 22.9 2.2E+02 0.0048 24.1 5.4 66 90-163 5-70 (317)
319 PRK04885 ppnK inorganic polyph 22.8 1.5E+02 0.0032 24.4 4.2 36 86-129 35-72 (265)
320 PRK13905 murB UDP-N-acetylenol 22.8 2.5E+02 0.0055 23.3 5.7 74 103-193 39-112 (298)
321 TIGR00393 kpsF KpsF/GutQ famil 22.6 1.7E+02 0.0038 23.4 4.7 38 86-128 47-84 (268)
322 TIGR00087 surE 5'/3'-nucleotid 22.4 3.8E+02 0.0082 21.7 6.5 36 10-46 2-37 (244)
323 PF10686 DUF2493: Protein of u 22.2 55 0.0012 21.0 1.3 27 89-118 5-31 (71)
324 PRK07308 flavodoxin; Validated 22.2 3.1E+02 0.0067 19.7 6.1 41 85-127 47-91 (146)
325 KOG3855 Monooxygenase involved 22.1 53 0.0012 29.0 1.5 17 80-96 30-46 (481)
326 PF01812 5-FTHF_cyc-lig: 5-for 22.0 1.5E+02 0.0033 22.4 4.0 31 9-40 41-71 (186)
327 PRK06728 aspartate-semialdehyd 21.8 4.6E+02 0.01 22.5 7.1 31 1-37 1-32 (347)
328 cd06315 PBP1_ABC_sugar_binding 21.8 2.2E+02 0.0047 22.8 5.1 35 9-43 1-38 (280)
329 cd06322 PBP1_ABC_sugar_binding 21.7 1.7E+02 0.0036 23.1 4.4 32 11-42 2-36 (267)
330 cd06319 PBP1_ABC_sugar_binding 21.5 1.6E+02 0.0035 23.3 4.2 34 10-43 1-37 (277)
331 cd05007 SIS_Etherase N-acetylm 21.3 2.1E+02 0.0046 23.3 4.8 38 85-127 117-154 (257)
332 PRK11543 gutQ D-arabinose 5-ph 21.2 1.9E+02 0.004 24.1 4.7 39 85-128 88-126 (321)
333 TIGR01357 aroB 3-dehydroquinat 21.0 2.1E+02 0.0046 24.2 5.0 38 85-128 80-117 (344)
334 PF07505 Gp37_Gp68: Phage prot 21.0 4.8E+02 0.01 21.5 8.5 45 83-127 185-230 (261)
335 PF13380 CoA_binding_2: CoA bi 21.0 3E+02 0.0065 19.2 8.5 88 9-127 1-88 (116)
336 cd01476 VWA_integrin_invertebr 20.9 2.5E+02 0.0055 20.3 5.0 35 9-43 104-139 (163)
337 PRK02947 hypothetical protein; 20.9 2.1E+02 0.0044 23.1 4.7 38 85-127 105-142 (246)
338 COG0812 MurB UDP-N-acetylmuram 20.7 5E+02 0.011 21.8 6.9 76 103-196 29-107 (291)
339 PRK14573 bifunctional D-alanyl 20.6 5.3E+02 0.011 24.9 8.0 34 1-41 1-34 (809)
340 PF11382 DUF3186: Protein of u 20.6 1.9E+02 0.0042 24.3 4.6 31 8-38 83-113 (308)
341 PRK12436 UDP-N-acetylenolpyruv 20.6 2.8E+02 0.0062 23.2 5.6 81 87-193 37-117 (305)
342 PRK07116 flavodoxin; Provision 20.6 1.3E+02 0.0028 22.3 3.2 40 85-126 75-114 (160)
343 cd06292 PBP1_LacI_like_10 Liga 20.5 2.8E+02 0.006 21.8 5.5 33 11-43 2-37 (273)
344 TIGR02638 lactal_redase lactal 20.4 1.6E+02 0.0035 25.4 4.2 14 85-98 85-98 (379)
345 cd07766 DHQ_Fe-ADH Dehydroquin 20.3 4.8E+02 0.01 21.8 7.0 38 85-128 77-114 (332)
346 PRK14649 UDP-N-acetylenolpyruv 20.3 2.8E+02 0.0061 23.1 5.4 77 103-196 29-108 (295)
347 COG0041 PurE Phosphoribosylcar 20.3 2.6E+02 0.0057 21.1 4.6 38 9-46 3-42 (162)
348 PF04024 PspC: PspC domain; I 20.2 65 0.0014 20.0 1.3 13 117-129 9-21 (61)
No 1
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=100.00 E-value=4.2e-36 Score=229.96 Aligned_cols=166 Identities=42% Similarity=0.731 Sum_probs=152.1
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
||+|++++||+..|+..|+++|+.+|+++.++|++++ ++.++.|..+.++.++++.+..+||+
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-----------------~v~~~~g~~i~~~~~~~~~~~~~~D~ 63 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-----------------TTVGKHGYSVTVDATIDEVNPEEYDA 63 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-----------------ceeccCCceeeccCChhhCCHHHCcE
Confidence 6999999999999999999999999999999998765 78889999999999998876668999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEE
Q 027708 90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV 169 (220)
Q Consensus 90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v 169 (220)
|+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+.++.+.+ .++
T Consensus 64 vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v 140 (166)
T TIGR01382 64 LVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVV 140 (166)
T ss_pred EEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEE
Confidence 99999977555567899999999999999999999999999999999999999999999999998888888743 399
Q ss_pred EcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708 170 VDGNIITGATYEGHPEFIRLFLKALG 195 (220)
Q Consensus 170 ~dg~iiTs~g~~s~~~~~~~li~~l~ 195 (220)
+|||+|||+|+.++.+|+..+++.++
T Consensus 141 ~dg~iiT~~~~~~~~~fa~~~~~~l~ 166 (166)
T TIGR01382 141 VDGNLVTSRVPDDLPAFNREFLKLLG 166 (166)
T ss_pred EECCEEEeCCcccHHHHHHHHHHHhC
Confidence 99999999999999999999999874
No 2
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=100.00 E-value=1.5e-35 Score=226.65 Aligned_cols=162 Identities=40% Similarity=0.690 Sum_probs=149.1
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC-CCCCCCCCcccccCCCcccccccccCc-ccccCcCcCCCCCCCc
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQQTYSETRGH-NFALNATFDEIDPTKY 87 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~l~~~~~~~~ 87 (220)
||+|+++|||+..|+..+.++|+.+|+++.+++++ ++ ++.++.|. .+.++..+++....+|
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-----------------~v~~~~g~~~i~~d~~~~~~~~~~~ 63 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-----------------EIQGKHGYDTVTVDLTIADVDADDY 63 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-----------------ccccCcCceeecCCCChHHCCHHHC
Confidence 69999999999999999999999999999999987 54 78889999 9999999988766689
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA 167 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~ 167 (220)
|+|+||||.++..+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.+.++.+.+
T Consensus 64 D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~---- 139 (165)
T cd03134 64 DALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE---- 139 (165)
T ss_pred CEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----
Confidence 9999999986555567899999999999999999999999999999999999999999999999988877777654
Q ss_pred EEEcCCEEeCCCCCCHHHHHHHHHH
Q 027708 168 CVVDGNIITGATYEGHPEFIRLFLK 192 (220)
Q Consensus 168 ~v~dg~iiTs~g~~s~~~~~~~li~ 192 (220)
+++|||+|||+|+.++.+|+..+++
T Consensus 140 ~v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 140 VVVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred EEEECCEEEecCcchHHHHHHHHHh
Confidence 8999999999999999999999986
No 3
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=100.00 E-value=2.8e-35 Score=224.48 Aligned_cols=161 Identities=36% Similarity=0.585 Sum_probs=143.7
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccc-cccCcccccCcCcCCCCCCCccE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS-ETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
|+|+++|||+..|+..+.++|+.+|+++.++|++++ ++. ++.|+.+.++..+++.+..+||+
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-----------------~~~~~~~g~~v~~~~~~~~~~~~~~D~ 63 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-----------------LAVGSSHGIKVKADKTLSDVNLDDYDA 63 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-----------------ceEeccCCCEEEecCCHhHcCCCCCCE
Confidence 689999999999999999999999999999999875 444 57899999999999876679999
Q ss_pred EEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceE
Q 027708 90 LVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 168 (220)
Q Consensus 90 liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~ 168 (220)
||||||. .+..+.+++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+ .+.++.+.. +
T Consensus 64 liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~~----~ 137 (163)
T cd03135 64 IVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEP----V 137 (163)
T ss_pred EEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecCC----E
Confidence 9999998 55555679999999999999999999999999999999999999999998876655 345666553 9
Q ss_pred EEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708 169 VVDGNIITGATYEGHPEFIRLFLKAL 194 (220)
Q Consensus 169 v~dg~iiTs~g~~s~~~~~~~li~~l 194 (220)
++|||++||+|+.++.++++++|+++
T Consensus 138 v~dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 138 VVDGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred EEECCEEEcCCcccHHHHHHHHHHhC
Confidence 99999999999999999999999874
No 4
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=1.4e-34 Score=224.45 Aligned_cols=180 Identities=54% Similarity=0.984 Sum_probs=150.3
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
||+|+++||++..|+..|+++|+++|++|+++|+++++.++.+.......+. ..+.+..|..+.++..+++.++.+||+
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~D~ 79 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGW-QTYTEKPGHRFAVTADFDEVDPDDYDA 79 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccc-cchhccCCcEEeccCCcccCCHhHCCE
Confidence 6999999999999999999999999999999999876322111111101111 134455688899999999877678999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEE
Q 027708 90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV 169 (220)
Q Consensus 90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v 169 (220)
|+||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.+..+.+.. ++
T Consensus 80 liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~----~v 155 (180)
T cd03169 80 LVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG----VV 155 (180)
T ss_pred EEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeecc----EE
Confidence 99999987655556889999999999999999999999999999999999999999999999998766665543 89
Q ss_pred EcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708 170 VDGNIITGATYEGHPEFIRLFLKAL 194 (220)
Q Consensus 170 ~dg~iiTs~g~~s~~~~~~~li~~l 194 (220)
+|||+|||+|+.++.+|+.++++.|
T Consensus 156 ~D~~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 156 VDGNLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred EECCEEEecCCchHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 5
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=3.9e-35 Score=227.18 Aligned_cols=169 Identities=30% Similarity=0.477 Sum_probs=145.9
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEE--EcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
||+|+++|||+..|+..|.++|+.+|+++.+ +|++++. ++++++|+.+.++..+++.+.++|
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~----------------~v~~~~g~~v~~~~~~~~~~~~~~ 64 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL----------------PVKGSRGVKILADASLEDVDLEEF 64 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc----------------ceEcCCCCEEeCCCCHHHCCcccC
Confidence 6999999999999999999999999987775 8876531 788999999999999988766789
Q ss_pred cEEEEcCCCC-cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708 88 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 166 (220)
Q Consensus 88 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~ 166 (220)
|+||||||.. ...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||.+.+.+++. .+....
T Consensus 65 D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~~--- 139 (179)
T TIGR01383 65 DAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVNE--- 139 (179)
T ss_pred CEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCCC---
Confidence 9999999963 3445578999999999999999999999999999999999999999999877665442 343233
Q ss_pred eEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708 167 ACVVDGNIITGATYEGHPEFIRLFLKALGGTIT 199 (220)
Q Consensus 167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a 199 (220)
.+++||+++||+|+.++.++++++|+++.|+..
T Consensus 140 ~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~~ 172 (179)
T TIGR01383 140 AVVVDGNIITSRGPGTAIEFALALVELLCGKEK 172 (179)
T ss_pred CEEEeCCEEECCChhhHHHHHHHHHHHhcCHHH
Confidence 489999999999999999999999998877643
No 6
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=5.4e-35 Score=227.93 Aligned_cols=168 Identities=20% Similarity=0.289 Sum_probs=148.4
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID 83 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~ 83 (220)
|+|+++|||+..|+..+.++|+.+| +++.+++++++ ++++++|+++.+|..+++.
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-----------------~v~~~~g~~v~~d~~~~~~- 62 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-----------------PVRSSSGLSLVADAGLDAL- 62 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-----------------ceeecCCcEEEcCcCcccc-
Confidence 6899999999999999999999988 78888887654 8899999999999988843
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CCCeEecC
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEP 162 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g~~~~~~ 162 (220)
++||+|+||||........++.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ +|...+..
T Consensus 63 -~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~ 141 (187)
T cd03137 63 -AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDP 141 (187)
T ss_pred -CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEec
Confidence 5899999999977654678999999999999999999999999999999999999999999999999988 56554433
Q ss_pred CCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708 163 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT 199 (220)
Q Consensus 163 ~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a 199 (220)
+. .+++||+++||+|+.+++|+++++|+++.|+..
T Consensus 142 ~~--~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~ 176 (187)
T cd03137 142 DV--LYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAV 176 (187)
T ss_pred CC--EEEecCCEEEcccHHHHHHHHHHHHHHHhCHHH
Confidence 22 488999999999999999999999998777644
No 7
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2.7e-35 Score=228.78 Aligned_cols=173 Identities=24% Similarity=0.316 Sum_probs=151.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC-----CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT 85 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~ 85 (220)
|+|+++|||++.|+..+.++|+.+| +++.++|++++ ++++++|..+.+|.++++. .
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-----------------~v~~~~g~~i~~d~~~~~~--~ 61 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-----------------PVSSRSGLTVLPDTSFADP--P 61 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-----------------ceEeCCCCEEcCCcccccC--C
Confidence 6899999999999999999999999 99999998765 8999999999999998864 4
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 165 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~ 165 (220)
+||+|+||||.++..+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+.++...
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~--- 138 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVD--- 138 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCC---
Confidence 89999999997766567899999999999999999999999999999999999999999999999998864443222
Q ss_pred ceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccce
Q 027708 166 AACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRI 205 (220)
Q Consensus 166 ~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~ 205 (220)
..+++||+++||+|+.++.++++++|+++.|+ .+.+ ++.+
T Consensus 139 ~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~ 180 (183)
T cd03139 139 ARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLI 180 (183)
T ss_pred CEEEecCCEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 25999999999999999999999999987776 4444 4433
No 8
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=2.1e-34 Score=224.26 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=145.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID 83 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~ 83 (220)
|+|+++|||...|+..++|+|+.+| +++.++|.+++ ++.+++|+.+.++..+.+.
T Consensus 1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-----------------~v~~~~g~~i~~d~~~~~~- 62 (185)
T cd03136 1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-----------------PVTSSNGLRVAPDAALEDA- 62 (185)
T ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-----------------eeecCCCcEEeCCcccccc-
Confidence 6899999999999999999999876 67777777654 8889999999999888754
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CC-CeEec
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AG-ASWIE 161 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g-~~~~~ 161 (220)
++||+||||||.... +..++.+++||++++++++.|+++|+|+++|+++|+|+|+++|+||...+.+++ +| .++.+
T Consensus 63 -~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~ 140 (185)
T cd03136 63 -PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTR 140 (185)
T ss_pred -CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCcccc
Confidence 589999999997655 578999999999999999999999999999999999999999999999999987 44 45543
Q ss_pred CCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708 162 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT 199 (220)
Q Consensus 162 ~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a 199 (220)
. .++.||++|||+|+.+++++++++|+++.|+..
T Consensus 141 ~----~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~ 174 (185)
T cd03136 141 D----LFEIDGDRLTCAGGTAALDLMLELIARDHGAAL 174 (185)
T ss_pred C----eEEEcCCEEEeccHHHHHHHHHHHHHHHhCHHH
Confidence 3 389999999999999999999999998877744
No 9
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=100.00 E-value=7.1e-34 Score=239.24 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=154.8
Q ss_pred CCCCCCCCCeEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCccc
Q 027708 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNF 73 (220)
Q Consensus 1 ~~~~~~~~~kI~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i 73 (220)
|++|+ +++|+|+++|||+..|++++.|+|+.++ +++.+++.+++ +|.+++|+.+
T Consensus 4 ~~~~~--~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-----------------~v~ss~g~~i 64 (322)
T PRK09393 4 MMTMH--NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-----------------PLRAAGGITV 64 (322)
T ss_pred ccccc--ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-----------------ceEeCCCcEE
Confidence 66776 6899999999999999999999998764 45666666543 8999999999
Q ss_pred ccCcCcCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHH
Q 027708 74 ALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLI 153 (220)
Q Consensus 74 ~~~~~l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~ 153 (220)
.+|..+++. ++||+||||||.+... ..++.+.+||++++++++.|++||+|+++||++|||+|+++|+||...+.++
T Consensus 65 ~~d~~~~~~--~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~ 141 (322)
T PRK09393 65 VADGGLELL--DRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQ 141 (322)
T ss_pred eCCCCcccc--CCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHH
Confidence 999999864 5899999999976543 4589999999999999999999999999999999999999999999999998
Q ss_pred H-CCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceee
Q 027708 154 A-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF 207 (220)
Q Consensus 154 ~-~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~ 207 (220)
+ +|...+..+. .++.|||++||+|+.+++++++++|++..+.. +.+ +..+++
T Consensus 142 ~~~p~~~~~~~~--~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~ 196 (322)
T PRK09393 142 ARYPAIRVDPDV--LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVV 196 (322)
T ss_pred HHCCCCEEeCCc--eEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence 7 5766555442 58899999999999999999999999776654 333 444443
No 10
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=100.00 E-value=1.1e-33 Score=216.63 Aligned_cols=158 Identities=25% Similarity=0.352 Sum_probs=135.2
Q ss_pred EecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 14 LCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 14 l~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
|+||||+..|++.+.|+|+.+| +++.+++++++ ++.+++|+.+.++..+++. .+
T Consensus 1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-----------------~v~~s~g~~i~~~~~~~~~--~~ 61 (166)
T PF13278_consen 1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-----------------PVTSSSGLRIQPDGSLDDA--PD 61 (166)
T ss_dssp EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-----------------EEEBTTSEEEEESEETCCC--SC
T ss_pred CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-----------------eeeecCCeEEEeccChhhc--cc
Confidence 6899999999999999999998 88888888765 8999999999999999984 58
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHC-CCeEecCCCC
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETM 165 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~ 165 (220)
+|+||||||........++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++. +...+..+.
T Consensus 62 ~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~- 140 (166)
T PF13278_consen 62 FDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ- 140 (166)
T ss_dssp CSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS-
T ss_pred CCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC-
Confidence 999999999884445678999999999999999999999999999999999999999999999999985 665544222
Q ss_pred ceEEEcCCEEeCCCCCCHHHHHHHHHH
Q 027708 166 AACVVDGNIITGATYEGHPEFIRLFLK 192 (220)
Q Consensus 166 ~~~v~dg~iiTs~g~~s~~~~~~~li~ 192 (220)
.++.|||++||+|..+++|+++++||
T Consensus 141 -~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 141 -LFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp -SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred -EEEECCCeEEecHHHHHHHHHHHHhC
Confidence 49999999999999999999999996
No 11
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=1.9e-33 Score=220.65 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=145.2
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCC------------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcC
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFG------------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNAT 78 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag------------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~ 78 (220)
|+|+++|||...+++.++|+|+.+| +++.+++.+++ ++.+++|+.+.+|..
T Consensus 1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-----------------~v~s~~g~~i~~d~~ 63 (195)
T cd03138 1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-----------------PVLLAGGILILPDAT 63 (195)
T ss_pred CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-----------------eeecCCCceeccccc
Confidence 6899999999999999999999754 56666665543 888999999999998
Q ss_pred cCCCCCCCccEEEEcCCCCc-c--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-
Q 027708 79 FDEIDPTKYDGLVIPGGRAP-E--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA- 154 (220)
Q Consensus 79 l~~~~~~~~D~liipGG~~~-~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~- 154 (220)
+++. ++||+||||||.+. . .+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++
T Consensus 64 ~~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~ 141 (195)
T cd03138 64 LADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRR 141 (195)
T ss_pred cccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHH
Confidence 8764 58999999998654 2 3567899999999999999999999999999999999999999999999999987
Q ss_pred CCC-eEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc
Q 027708 155 AGA-SWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS 201 (220)
Q Consensus 155 ~g~-~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~ 201 (220)
++. .+.+.. .++.||++|||+|+.+++++++++|+++.|+ .+++
T Consensus 142 ~p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~~ 187 (195)
T cd03138 142 FPKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGPELAQL 187 (195)
T ss_pred CCCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHHH
Confidence 554 444433 4899999999999999999999999987766 4444
No 12
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=4e-33 Score=214.31 Aligned_cols=163 Identities=27% Similarity=0.427 Sum_probs=140.7
Q ss_pred EEEEecCCCCchhhHHHHHHHHhC-CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
|+|+++|+|++.|++.++++|+++ ++++.+++++++ ++++++|+.+.++.++++.+.++||+
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-----------------~v~ss~g~~i~~~~~~~~~~~~~~D~ 63 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-----------------PVTSIGGLRVVPDYSLDDLPPEDYDL 63 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-----------------eeEecCCeEEccccchhHCCHhHccE
Confidence 689999999999999999999997 799999998775 89999999999999999876568999
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCC-CHHHHHHC--CCeEecCCCCc
Q 027708 90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIAA--GASWIEPETMA 166 (220)
Q Consensus 90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~-~~~~l~~~--g~~~~~~~~~~ 166 (220)
|+||||..... ..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||. ..+.+++. +..+....
T Consensus 64 l~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~--- 139 (170)
T cd03140 64 LILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP--- 139 (170)
T ss_pred EEEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---
Confidence 99999976443 4688999999999999999999999999999999999999999985 45555442 44443333
Q ss_pred eEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708 167 ACVVDGNIITGATYEGHPEFIRLFLKALG 195 (220)
Q Consensus 167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~ 195 (220)
.+++|||+|||+|. ++.||++++|++++
T Consensus 140 ~~v~dg~iiT~~g~-a~~d~al~~i~~l~ 167 (170)
T cd03140 140 QAVSDGNLITANGT-APVEFAAEILRALD 167 (170)
T ss_pred cEEEcCCEEECCCc-CHHHHHHHHHHHcC
Confidence 39999999999875 68999999999875
No 13
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=100.00 E-value=6.9e-33 Score=229.11 Aligned_cols=185 Identities=16% Similarity=0.232 Sum_probs=151.4
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
+.+|+++++++|....+..+++.|+.+|.. +... ...|.+.+.++. +|.+++|+.+.+|..+++.. .+
T Consensus 10 ~~~~~~ll~p~f~l~~fa~~ve~lr~An~~----~~~~----~~~w~~~s~~g~--~V~ss~G~~i~~d~~~~~~~--~~ 77 (328)
T COG4977 10 PQRFGFLLLPNFSLMAFASAVEPLRAANRL----AGRS----LYVWSIVSADGG--PVRSSSGLSIAPDGGLEAAP--PI 77 (328)
T ss_pred ceEEEEEEeCCCchhhhhhhHHHHHHhhhh----cccc----ccceEEeecCCC--CcccCCCceEecCCcccccC--cc
Confidence 467999999999999999999999998731 1100 001333333333 89999999999999999864 59
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CCCeEecCCCCc
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMA 166 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g~~~~~~~~~~ 166 (220)
|+++++||..+......+++.+||++.+++|..|+++|+|+++||++||||||+||+||...+.|++ +|...+..+
T Consensus 78 ~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~--- 154 (328)
T COG4977 78 DILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDR--- 154 (328)
T ss_pred eEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCc---
Confidence 9999999987765444489999999999999999999999999999999999999999999999988 687664444
Q ss_pred eEEEcCCEEeCCCCCCHHHHHHHHHHH-Hccccccc-ccceee
Q 027708 167 ACVVDGNIITGATYEGHPEFIRLFLKA-LGGTITGS-DKRILF 207 (220)
Q Consensus 167 ~~v~dg~iiTs~g~~s~~~~~~~li~~-l~~~~a~~-~~~~~~ 207 (220)
++++||++|||+|.++++|++++||++ ++.+.+.+ ++..++
T Consensus 155 lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~ 197 (328)
T COG4977 155 LFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV 197 (328)
T ss_pred eEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence 699999999999999999999999975 55556666 444444
No 14
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=100.00 E-value=2.4e-32 Score=214.57 Aligned_cols=187 Identities=22% Similarity=0.364 Sum_probs=152.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
+|||+|+++|||++.|+..|+++|+++|+++++++.+++.. .++.+++|+.+.++..+++++.++|
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~--------------~~v~ss~G~~v~~d~~l~~~~~~~~ 67 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN--------------LEITCSRGVKLLADAPLVEVADGDF 67 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCC--------------ceEEcCCCCEEeCCCCHHHCCCCCC
Confidence 47999999999999999999999999999999998754210 1688999999999999988766689
Q ss_pred cEEEEcCCCC-cccccCChHHHHHHHHHHhCCCeEEEEehHHHH-HHhCcccCCceEecCCCCHHHHHHCC-CeEecCCC
Q 027708 88 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAG-ASWIEPET 164 (220)
Q Consensus 88 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~-La~aglL~g~~~T~~~~~~~~l~~~g-~~~~~~~~ 164 (220)
|+|+||||.. ...+..++.+.+||++++++|++|++||+|+++ |+.+|+|+|+++|.++.+.+. +| ..+.++.
T Consensus 68 D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~---~p~~~~~~~~- 143 (196)
T PRK11574 68 DVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK---IPAEQWQDKR- 143 (196)
T ss_pred CEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh---cccCcccCCC-
Confidence 9999999974 344567889999999999999999999999985 677999999999988776543 33 3444443
Q ss_pred CceEEEcC--CEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccceeeecCCchhh
Q 027708 165 MAACVVDG--NIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILFLCGVSFCF 215 (220)
Q Consensus 165 ~~~~v~dg--~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~~~~~~~~~~~ 215 (220)
+++|+ |+|||+|++++.|+++++|+++.|. .+.+ ++.+++...+..||
T Consensus 144 ---~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~~~~~~~ 195 (196)
T PRK11574 144 ---VVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAAGIYNYY 195 (196)
T ss_pred ---EEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCccccccc
Confidence 66675 9999999999999999999988777 4555 55555555555544
No 15
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.98 E-value=8.6e-32 Score=207.66 Aligned_cols=173 Identities=39% Similarity=0.629 Sum_probs=157.7
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
++++.|+..++.++.|+..|.++|++.|.+|.++++..+. ++.++.|..+.+|..+.+.....|
T Consensus 5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~----------------~vkcs~~v~~~~d~~l~D~~~~~y 68 (247)
T KOG2764|consen 5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE----------------GVKCSRGVHILPDNALFDVVDSKY 68 (247)
T ss_pred cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc----------------ccccccceEecccccchhhccccc
Confidence 4689999999999999999999999999999999987653 778888888999988877766899
Q ss_pred cEEEEcCC-CCcccccCChHHHHHHHHHHhCCCeEEEEehHH-HHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708 88 DGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM 165 (220)
Q Consensus 88 D~liipGG-~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~-~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~ 165 (220)
|+++|||| +++..+...+.+.+.+++|.+.|++|++||+|+ .+|+..|++.|+++|+||...+.+.+-|..|+++.
T Consensus 69 DviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~-- 146 (247)
T KOG2764|consen 69 DVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR-- 146 (247)
T ss_pred cEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC--
Confidence 99999999 788888899999999999999999999999999 66777778889999999999999988888888886
Q ss_pred ceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccccc
Q 027708 166 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITG 200 (220)
Q Consensus 166 ~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a~ 200 (220)
++.|||++||+|+..+.+|++.|+|+|+|++..
T Consensus 147 --vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka 179 (247)
T KOG2764|consen 147 --VVKDGNLITSRGPGTAFEFALKLVEQLGGKEKA 179 (247)
T ss_pred --eEEeCcEEeccCCCchHHHHHHHHHHhcCchhh
Confidence 899999999999999999999999999999654
No 16
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.97 E-value=6e-31 Score=210.53 Aligned_cols=178 Identities=23% Similarity=0.315 Sum_probs=140.9
Q ss_pred CCCCchhhHHHHHHHHhCCCeEEEEcCCCCC-CCCCCcccccCCCccccc----ccccCcccccCcCcCCCCCCCccEEE
Q 027708 17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTGHQQTY----SETRGHNFALNATFDEIDPTKYDGLV 91 (220)
Q Consensus 17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~~~~~~~~~~~~~~~~~v----~~~~g~~i~~~~~l~~~~~~~~D~li 91 (220)
.|+...|+..|+++|+++|++|+++|++++. .++..+...........+ ..+.+..+.++..+++++..+||+||
T Consensus 20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~ 99 (231)
T cd03147 20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF 99 (231)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence 4888999999999999999999999997642 222111111111110112 23455677888899999888999999
Q ss_pred EcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-------cccCCceEecCCCC---------------
Q 027708 92 IPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV--------------- 148 (220)
Q Consensus 92 ipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-------glL~g~~~T~~~~~--------------- 148 (220)
||||+++ ..+.+++.++++|++++++||+|++||+|+.+|+.+ ++++||++|+|+..
T Consensus 100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~ 179 (231)
T cd03147 100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN 179 (231)
T ss_pred ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence 9999875 447899999999999999999999999999999987 99999999999865
Q ss_pred ----HHHHHHCCCeEecCC--CCceEEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708 149 ----KPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKAL 194 (220)
Q Consensus 149 ----~~~l~~~g~~~~~~~--~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l 194 (220)
++.+++.|++|++.+ -+..+++|||+||++++.++.++++.+++.|
T Consensus 180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 344566788988642 1234889999999999999999999999875
No 17
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.97 E-value=6.4e-31 Score=209.87 Aligned_cols=178 Identities=28% Similarity=0.467 Sum_probs=141.4
Q ss_pred CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCccccc---ccccCcccccCcCcCCCCCCCccEEEEc
Q 027708 17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTY---SETRGHNFALNATFDEIDPTKYDGLVIP 93 (220)
Q Consensus 17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v---~~~~g~~i~~~~~l~~~~~~~~D~liip 93 (220)
+|+++.|+..|+++|+++|++|+++++++++.....+.+.......... ..+.+..+.++..+++++..+||+|+||
T Consensus 18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ip 97 (221)
T cd03141 18 TGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIP 97 (221)
T ss_pred CccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEEC
Confidence 7999999999999999999999999997753111111111110000000 1245667889999999988899999999
Q ss_pred CCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc------ccCCceEecCCCCH---------------HH
Q 027708 94 GGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PV 151 (220)
Q Consensus 94 GG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag------lL~g~~~T~~~~~~---------------~~ 151 (220)
||.++. .+..++.+++||+++++++|+|++||+|+++|+++| +|+||++|+||... +.
T Consensus 98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~ 177 (221)
T cd03141 98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDE 177 (221)
T ss_pred CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHH
Confidence 998653 467899999999999999999999999999999999 79999999998754 34
Q ss_pred HHHCCCeEecCCC-CceEEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708 152 LIAAGASWIEPET-MAACVVDGNIITGATYEGHPEFIRLFLKAL 194 (220)
Q Consensus 152 l~~~g~~~~~~~~-~~~~v~dg~iiTs~g~~s~~~~~~~li~~l 194 (220)
+++.|++|.+..+ +..+|+|+|+||++|+.++.+|++++|+.|
T Consensus 178 l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 178 LKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 6777888886431 235899999999999999999999999864
No 18
>PRK04155 chaperone protein HchA; Provisional
Probab=99.97 E-value=1.4e-30 Score=213.67 Aligned_cols=188 Identities=18% Similarity=0.272 Sum_probs=146.0
Q ss_pred CCCeEEEEec--------------CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCccccccc---cc
Q 027708 7 GKRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE---TR 69 (220)
Q Consensus 7 ~~~kI~il~~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~---~~ 69 (220)
.+|||+|++. .|+++.|+..|+++|+++|++|+++|+++++.....|+... .+..+.. ..
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~---~d~~v~~~~~~~ 124 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPH---EDEAVMGFYEKY 124 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccc---cchhHHHHHHHh
Confidence 4679999986 48889999999999999999999999977532222233211 1111211 22
Q ss_pred CcccccCcCcCCC----C--CCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc------c
Q 027708 70 GHNFALNATFDEI----D--PTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------V 136 (220)
Q Consensus 70 g~~i~~~~~l~~~----~--~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag------l 136 (220)
+..+..+..++++ . ..+||+||||||+++ ..+..++.+.++|+++++++|+|++||+|+++|..+| +
T Consensus 125 ~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~l 204 (287)
T PRK04155 125 KSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNP 204 (287)
T ss_pred hhhccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcc
Confidence 3334444444333 2 569999999999875 4588999999999999999999999999999999999 9
Q ss_pred cCCceEecCCCC-------------------HHHHHHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc
Q 027708 137 VKGRKCTAYPPV-------------------KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT 197 (220)
Q Consensus 137 L~g~~~T~~~~~-------------------~~~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~ 197 (220)
++||++|+|+.. ++.|++.|+.+++++....+|+|||+||++|+.++.+|++.+++.|..+
T Consensus 205 l~GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~ 284 (287)
T PRK04155 205 LNGYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA 284 (287)
T ss_pred cCCCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence 999999998865 4567778999998632335999999999999999999999999987654
No 19
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.97 E-value=2.7e-29 Score=196.06 Aligned_cols=176 Identities=40% Similarity=0.707 Sum_probs=152.4
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccC-cccccCcCcCCCCCCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG-HNFALNATFDEIDPTK 86 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~i~~~~~l~~~~~~~ 86 (220)
++||+|++++||+..|+..|+++|+.+|+.+.++++..+. ..+.++.| ..+.++..++++++.+
T Consensus 2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~---------------~~~~~~~g~~~~~~~~~~~~~~~~~ 66 (188)
T COG0693 2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG---------------KSVTSKRGGLVVADDKAFDDADAAD 66 (188)
T ss_pred CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc---------------ceeecccCcceEecccccccCCHhH
Confidence 4799999999999999999999999999999999987630 03444444 5666777888877779
Q ss_pred ccEEEEcCC-CCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc-ccCCceEecCCCCHHHHHH----CCCeEe
Q 027708 87 YDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWI 160 (220)
Q Consensus 87 ~D~liipGG-~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag-lL~g~~~T~~~~~~~~l~~----~g~~~~ 160 (220)
||+|+|||| +++..+..++.+++|++++++++|+|++||+|+.+|+++| +++||++|+++..++.... .|++|+
T Consensus 67 ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~v 146 (188)
T COG0693 67 YDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYV 146 (188)
T ss_pred CCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEe
Confidence 999999999 7887777779999999999999999999999999999999 9999999999999988877 689999
Q ss_pred cCCC-CceEEEcCC-EEeCCCCCCHHHHHHHHHHHHcccc
Q 027708 161 EPET-MAACVVDGN-IITGATYEGHPEFIRLFLKALGGTI 198 (220)
Q Consensus 161 ~~~~-~~~~v~dg~-iiTs~g~~s~~~~~~~li~~l~~~~ 198 (220)
+... ...++.||+ ++|+.++.++.+++..+++.+.+..
T Consensus 147 d~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 147 DAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred ccccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 8831 012899999 9999999999999999999987753
No 20
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.97 E-value=2e-29 Score=201.89 Aligned_cols=177 Identities=17% Similarity=0.244 Sum_probs=140.1
Q ss_pred ecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccc---cccCcccccCcCcCCC------CCC
Q 027708 15 CGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS---ETRGHNFALNATFDEI------DPT 85 (220)
Q Consensus 15 ~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~i~~~~~l~~~------~~~ 85 (220)
+..|+++.|+..|+++|+++|++|+++|++++......++. .+.+..+. ...+..+..+..++++ +..
T Consensus 19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~---~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~ 95 (232)
T cd03148 19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAM---PHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDS 95 (232)
T ss_pred cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCcccc---ccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChh
Confidence 46899999999999999999999999999775211001111 11110111 1244557777788776 356
Q ss_pred CccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcc------cCCceEecCCCCHH--------
Q 027708 86 KYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP-------- 150 (220)
Q Consensus 86 ~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~agl------L~g~~~T~~~~~~~-------- 150 (220)
+||+||+|||+++. +++.++.+.+++++++++||+|++||+|+.+|..+++ ++||++|+|+..++
T Consensus 96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~ 175 (232)
T cd03148 96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIG 175 (232)
T ss_pred hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccc
Confidence 89999999998764 5899999999999999999999999999999999998 99999999987654
Q ss_pred ------------HHHHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708 151 ------------VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 194 (220)
Q Consensus 151 ------------~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l 194 (220)
.+++.|++|...+-...+|+||++||++++.|+..++..+|+.+
T Consensus 176 ~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 176 YMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred cccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 45566888887732345999999999999999999999999865
No 21
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.96 E-value=1.6e-28 Score=184.42 Aligned_cols=130 Identities=39% Similarity=0.725 Sum_probs=116.5
Q ss_pred ccccccC---cccccCcCcCCCCCCCccEEEEcCCCC-cccccCC-hHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccC
Q 027708 64 TYSETRG---HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAADVVK 138 (220)
Q Consensus 64 ~v~~~~g---~~i~~~~~l~~~~~~~~D~liipGG~~-~~~~~~~-~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~ 138 (220)
.+.++.| ..+.++..+++++..+||+||||||.+ +..+..+ +.++++++++++++|+|++||+|+.+|+++|+|+
T Consensus 12 ~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~gll~ 91 (147)
T PF01965_consen 12 EVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAAGLLK 91 (147)
T ss_dssp EEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHTTTTT
T ss_pred eEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhccCccC
Confidence 7888888 999999999999988999999999987 5667645 9999999999999999999999999999999999
Q ss_pred CceEecCCCCHHHHHHCCCeEecCCCCceEEEcC-CEEeCCCCCCHHHHHHHHHHHHc
Q 027708 139 GRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFLKALG 195 (220)
Q Consensus 139 g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~dg-~iiTs~g~~s~~~~~~~li~~l~ 195 (220)
|+++|+|+..++.++..|..|++.+. .+++|+ |+||++|+.++.+|++.+++.|+
T Consensus 92 g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~ive~L~ 147 (147)
T PF01965_consen 92 GKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIVEALG 147 (147)
T ss_dssp TSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHHHHHT
T ss_pred CceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHHHHcC
Confidence 99999999999988889999998432 388999 99999999999999999999875
No 22
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.95 E-value=1.4e-26 Score=183.51 Aligned_cols=166 Identities=26% Similarity=0.323 Sum_probs=128.5
Q ss_pred CeEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccC-------
Q 027708 9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALN------- 76 (220)
Q Consensus 9 ~kI~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~------- 76 (220)
+||+|++. +|+++.|+..|+++|+++|++|+++|++++.... +. + ..+. .+..+.++.+..+
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~--~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~ 75 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHV--IN-H-LTGE--EMGETRNVLVESARIARGEI 75 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCcccc--cc-C-cccc--ccccccceeeehhhhhccCC
Confidence 58999998 9999999999999999999999999997642100 00 0 0010 2333334333332
Q ss_pred cCcCCCCCCCccEEEEcCCCCcc-----------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecC
Q 027708 77 ATFDEIDPTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY 145 (220)
Q Consensus 77 ~~l~~~~~~~~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~ 145 (220)
..++++++.+||+||||||+++. .++.++.+++++++|+++||+|++||+|+++|+.+.. +||++|++
T Consensus 76 ~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~ 154 (217)
T PRK11780 76 KDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIG 154 (217)
T ss_pred CchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEec
Confidence 57788888899999999998642 2355899999999999999999999999999988632 89999999
Q ss_pred --CCCHHHHHHCCCeEecCCCCceEEEc--CCEEeCCCCCC
Q 027708 146 --PPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYEG 182 (220)
Q Consensus 146 --~~~~~~l~~~g~~~~~~~~~~~~v~d--g~iiTs~g~~s 182 (220)
+.....+++.|++|++.+.. -+|+| +|+|||.....
T Consensus 155 ~~~~~~~~~~~aGa~~vd~~~~-~vvvD~~~~lvt~~~~~~ 194 (217)
T PRK11780 155 NDEDTAAAIEKMGGEHVDCPVD-DIVVDEENKVVTTPAYML 194 (217)
T ss_pred CChhhHHHHHHCCCEEEcCCCC-eEEEECCCCEEeCCcccC
Confidence 88889999999999987432 25666 78999997543
No 23
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.94 E-value=1.4e-25 Score=176.70 Aligned_cols=159 Identities=25% Similarity=0.330 Sum_probs=123.1
Q ss_pred cCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccC-------cCcCCCCCCCcc
Q 027708 16 GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALN-------ATFDEIDPTKYD 88 (220)
Q Consensus 16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~l~~~~~~~~D 88 (220)
++||++.|+..|+++|+++|++|+++|++++... +..... +. .+..+.++.+.++ ..+++++..+||
T Consensus 11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~---~d~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyD 84 (213)
T cd03133 11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMH---VVNHLT-GE--AEGESRNVLVESARIARGNIKDLAKLKAADFD 84 (213)
T ss_pred CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccC---cccccc-cc--ccccccceeeehhhhhhcCCCchHHCCHhHCC
Confidence 5899999999999999999999999999765211 100111 00 2333445544444 678888778999
Q ss_pred EEEEcCCCCc-ccc----------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCC--CCHHHHHHC
Q 027708 89 GLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--PVKPVLIAA 155 (220)
Q Consensus 89 ~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~--~~~~~l~~~ 155 (220)
+||||||+++ ..+ +.++.+++++++++++||+|++||+|+.+|++++. +||++|+|+ ..++.+++.
T Consensus 85 alviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~a 163 (213)
T cd03133 85 ALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKM 163 (213)
T ss_pred EEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHC
Confidence 9999999864 222 24889999999999999999999999999999766 999999999 888889999
Q ss_pred CCeEecCCCCceEEEc--CCEEeCCCCCC
Q 027708 156 GASWIEPETMAACVVD--GNIITGATYEG 182 (220)
Q Consensus 156 g~~~~~~~~~~~~v~d--g~iiTs~g~~s 182 (220)
|++|++.+.+ .+++| ||+|||+....
T Consensus 164 Ga~~~d~~~~-~vvvd~dg~lITs~~~~~ 191 (213)
T cd03133 164 GAEHVNCPVE-EIVVDEKNKVVTTPAYML 191 (213)
T ss_pred CCEEEeCCCC-eEEEECCCCEEeCccccC
Confidence 9999976332 24544 79999998754
No 24
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.91 E-value=2.3e-23 Score=155.45 Aligned_cols=112 Identities=25% Similarity=0.376 Sum_probs=103.0
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+|++++||+..|+..+.++|+.+|+++.++|++++ +++++.|..+.++.++++.+..+||
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-----------------~v~s~~g~~i~~~~~l~~~~~~~~D 64 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-----------------GVVDSDGKTLEVDQTYAGAPSVLFD 64 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-----------------ceecCCCcEEecceeecCCChhhcC
Confidence 68999999999999999999999999999999999875 7889999999999999987666899
Q ss_pred EEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCccc
Q 027708 89 GLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV 137 (220)
Q Consensus 89 ~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL 137 (220)
+|+||||.+.. .+..++.+.+||+++++++++|+++|+|+++|+++|+|
T Consensus 65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 99999997643 34678999999999999999999999999999999997
No 25
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.75 E-value=7.4e-18 Score=152.61 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=105.6
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
+|||+||+++|++..|+..+.++|..+|..+.+++++++ +|.++.|..+.++.++++.++..|
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-----------------~V~~s~G~~I~aD~t~~~~~Sv~F 659 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-----------------EVTADDGTVLPIAATFAGAPSLTF 659 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-----------------eEECCCCCEEecceeeccCCccCC
Confidence 689999999999999999999999999999999999775 788999999999999999877789
Q ss_pred cEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccC
Q 027708 88 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK 138 (220)
Q Consensus 88 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~ 138 (220)
|+|+||||. ++..+..++.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus 660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence 999999996 455577899999999999999999999999999999999855
No 26
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.42 E-value=2.1e-12 Score=104.34 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=88.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|+|+.++|..- -....++|+.+|+++.+++.... +. + ..+..+||.|
T Consensus 1 v~vl~~pG~n~--~~~~~~al~~aG~~v~~v~~~~~------------------~~---~----------~~~l~~~d~l 47 (238)
T cd01740 1 VAVLRFPGSNC--DRDMAYAFELAGFEAEDVWHNDL------------------LA---G----------RKDLDDYDGV 47 (238)
T ss_pred CEEEEcCCcCC--HHHHHHHHHHcCCCEEEEeccCC------------------cc---c----------cCCHhhCCEE
Confidence 58999999862 23467889999999888765320 00 0 1123479999
Q ss_pred EEcCCCCc-cccc-----CChH-HHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCC
Q 027708 91 VIPGGRAP-EYLA-----MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE 163 (220)
Q Consensus 91 iipGG~~~-~~~~-----~~~~-l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~ 163 (220)
+||||... +.+. .... +.++|+++.+++++|++||.|.++|+++|+|.|+. +.++..+...+..+ .|++..
T Consensus 48 iipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~~ 125 (238)
T cd01740 48 VLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTLR 125 (238)
T ss_pred EECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEEE
Confidence 99999642 2221 1223 88999999999999999999999999999999976 66555442222111 344432
Q ss_pred CCceEEEcCCEEeCC
Q 027708 164 TMAACVVDGNIITGA 178 (220)
Q Consensus 164 ~~~~~v~dg~iiTs~ 178 (220)
++.+++++|+.
T Consensus 126 ----v~~~~si~t~~ 136 (238)
T cd01740 126 ----VENNDSPFTKG 136 (238)
T ss_pred ----EcCCCCceecC
Confidence 55677788876
No 27
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.41 E-value=2.5e-12 Score=102.48 Aligned_cols=93 Identities=24% Similarity=0.382 Sum_probs=73.0
Q ss_pred eEEEEecCCCC-chhhHHHHHHHH-hCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 10 SVLLLCGDYME-DYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 10 kI~il~~~g~~-~~e~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
||+|+.++|.. +.|+ ..+|+ .+|+++..++.+. .+ .++|
T Consensus 2 ~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~----------------------------------~~--l~~~ 42 (219)
T PRK03619 2 KVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKE----------------------------------TD--LDGV 42 (219)
T ss_pred EEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCc----------------------------------CC--CCCC
Confidence 89999999987 3444 66887 7898876664321 11 2479
Q ss_pred cEEEEcCCCCcc------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCce
Q 027708 88 DGLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK 141 (220)
Q Consensus 88 D~liipGG~~~~------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~ 141 (220)
|+|+||||.+.. ....++.+.+||+++++++++|++||+|.++|+++|||+|+-
T Consensus 43 D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 43 DAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred CEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 999999996421 123457899999999999999999999999999999999953
No 28
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=5.2e-12 Score=93.09 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=115.0
Q ss_pred CeEEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCc-----ccccccccCcccccCcC
Q 027708 9 RSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-----QQTYSETRGHNFALNAT 78 (220)
Q Consensus 9 ~kI~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-----~~~v~~~~g~~i~~~~~ 78 (220)
|||++++ |||.+..|-...+-.+.+.|.++..+.|+....+. ++...+. ++....+..+..---..
T Consensus 2 Kkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hV----iNHlTGE~m~EtRNVLvEsARIaRG~i~~ 77 (217)
T COG3155 2 KKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHV----INHLTGEAMPETRNVLVESARIARGEIRP 77 (217)
T ss_pred ceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhh----hhhccccccchhhhHHHHHHHHhhccccc
Confidence 6999997 68999999999999999999999999887643221 1122211 22233333332222234
Q ss_pred cCCCCCCCccEEEEcCCCCccc-c----------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-cccCCceEe--c
Q 027708 79 FDEIDPTKYDGLVIPGGRAPEY-L----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCT--A 144 (220)
Q Consensus 79 l~~~~~~~~D~liipGG~~~~~-~----------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-glL~g~~~T--~ 144 (220)
+.+.++++||++++|||+++.. + .-++++.++.+.+++.|||++-+|.++.+|.+- |. +.+.| .
T Consensus 78 l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~--~~~~TIGn 155 (217)
T COG3155 78 LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF--PLRLTIGN 155 (217)
T ss_pred hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC--ceeEEecC
Confidence 5666778999999999998532 2 247899999999999999999999999998753 22 22333 3
Q ss_pred CCCCHHHHHHCCCeEecCCCCceEEE-cCCEEeCC
Q 027708 145 YPPVKPVLIAAGASWIEPETMAACVV-DGNIITGA 178 (220)
Q Consensus 145 ~~~~~~~l~~~g~~~~~~~~~~~~v~-dg~iiTs~ 178 (220)
.....+.+++.|+..++.+.+..++. +.+++|.-
T Consensus 156 D~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP 190 (217)
T COG3155 156 DIDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP 190 (217)
T ss_pred CccHHHHHHHhCcccCCCCccceeecCCCceecCh
Confidence 55667888899998888877666664 56677743
No 29
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.35 E-value=9.7e-12 Score=101.26 Aligned_cols=98 Identities=22% Similarity=0.350 Sum_probs=71.9
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+|++++|++... .+.++|+.+|+++.+++.... .+ ... ...+||
T Consensus 4 ~kvaVl~~pG~n~d~--e~~~Al~~aG~~v~~v~~~~~----------------------------~~-~~~--~l~~~D 50 (261)
T PRK01175 4 IRVAVLRMEGTNCED--ETVKAFRRLGVEPEYVHINDL----------------------------AA-ERK--SVSDYD 50 (261)
T ss_pred CEEEEEeCCCCCCHH--HHHHHHHHCCCcEEEEeeccc----------------------------cc-ccc--chhhCC
Confidence 589999999997332 447899999998888754210 00 001 234799
Q ss_pred EEEEcCCCCc-ccccCC--------hHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCC
Q 027708 89 GLVIPGGRAP-EYLAMN--------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 139 (220)
Q Consensus 89 ~liipGG~~~-~~~~~~--------~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g 139 (220)
+|+||||.+. +.+... +.+.+.|+++.+++|+|.+||.|.++|+++|+|.|
T Consensus 51 gLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg 110 (261)
T PRK01175 51 CLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG 110 (261)
T ss_pred EEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence 9999999642 222211 22447889999999999999999999999999988
No 30
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.25 E-value=1.2e-10 Score=93.52 Aligned_cols=92 Identities=26% Similarity=0.423 Sum_probs=71.3
Q ss_pred eEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 10 SVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 10 kI~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
||+|+.++|.+. .|. ...|+.+|..+.++.... .+ .+++|
T Consensus 2 ~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~----------------------------------~~--l~~~d 42 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYED----------------------------------GS--LPDYD 42 (227)
T ss_pred eEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCC----------------------------------CC--CCCCC
Confidence 899999998863 455 478888998877763211 01 23799
Q ss_pred EEEEcCCCCcc------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCc
Q 027708 89 GLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 140 (220)
Q Consensus 89 ~liipGG~~~~------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~ 140 (220)
+|+||||.... .+..+..+.++|+++.+++++|.+||.|.++|+++|+|+|.
T Consensus 43 ~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 43 GVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred EEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 99999996421 12335678899999999999999999999999999999984
No 31
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.24 E-value=4.2e-11 Score=93.53 Aligned_cols=93 Identities=30% Similarity=0.471 Sum_probs=71.8
Q ss_pred CCeEEEEecCCCC-chhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC-
Q 027708 8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT- 85 (220)
Q Consensus 8 ~~kI~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~- 85 (220)
++||+|+.++|.+ +.|. ...|+.+|+++..+.-+. ....
T Consensus 2 ~~kvaVi~fpGtN~d~d~---~~A~~~aG~~~~~V~~~d------------------------------------~~~~~ 42 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDM---AAAFERAGFEAEDVWHSD------------------------------------LLLGR 42 (231)
T ss_pred CceEEEEEcCCcCchHHH---HHHHHHcCCCceEEEeee------------------------------------cccCC
Confidence 3699999999987 3444 446668888776664321 1112
Q ss_pred CccEEEEcCCCCccc-c-----cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCC
Q 027708 86 KYDGLVIPGGRAPEY-L-----AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 139 (220)
Q Consensus 86 ~~D~liipGG~~~~~-~-----~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g 139 (220)
+||+|++|||.+..+ + ..-..+.+-++++.++|+++.+||+|-++|.++|||.|
T Consensus 43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 699999999986422 2 23468899999999999999999999999999999999
No 32
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=99.03 E-value=3.8e-09 Score=73.48 Aligned_cols=91 Identities=33% Similarity=0.578 Sum_probs=74.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|++++++++...++..+.+.|+.+++++++++..... ..+ .....+||+|
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~~~-------------~~~~~~~d~l 50 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP-----------------VES-------------DVDLDDYDGL 50 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc-----------------eec-------------cCChhccCEE
Confidence 5789999999999999999999999999999876531 111 1124589999
Q ss_pred EEcCCCCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708 91 VIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 131 (220)
Q Consensus 91 iipGG~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L 131 (220)
++|||..... ...++.++++++++..++++++++|.|++++
T Consensus 51 ii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 51 ILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred EECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 9999876433 2247899999999999999999999999998
No 33
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.98 E-value=1.6e-09 Score=82.91 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=66.3
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
.||+||...|.... -...|++.|.++.++... ++ ..++|
T Consensus 3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-----------------------------------~~--l~~~D 41 (179)
T PRK13526 3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-----------------------------------ND--FDSID 41 (179)
T ss_pred cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-----------------------------------HH--HhCCC
Confidence 58999999995433 667788888776555321 11 23799
Q ss_pred EEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh----CcccCC
Q 027708 89 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA----ADVVKG 139 (220)
Q Consensus 89 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~----aglL~g 139 (220)
.|++|||.+.. .+..+..+.+.|+++.+ +|++++||.|+.+|++ .|+++|
T Consensus 42 ~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg 97 (179)
T PRK13526 42 RLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL 97 (179)
T ss_pred EEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence 99999996543 44556679999999885 7899999999999998 355555
No 34
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.97 E-value=1.8e-09 Score=83.81 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=66.2
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
||+|++.+|. +....+.|++.|.++.++++. ++ .+++|+
T Consensus 1 ~igvl~~qg~----~~e~~~~l~~~g~~~~~v~~~-----------------------------------~~--l~~~d~ 39 (184)
T TIGR03800 1 KIGVLALQGA----VREHARALEALGVEGVEVKRP-----------------------------------EQ--LDEIDG 39 (184)
T ss_pred CEEEEEccCC----HHHHHHHHHHCCCEEEEECCh-----------------------------------HH--hccCCE
Confidence 6999999984 344668999999988777541 11 237999
Q ss_pred EEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 90 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 90 liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|+||||.+.. .+..+..+.++|+++.+++++|.+||.|..+|++.
T Consensus 40 liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 40 LIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred EEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 9999996532 23345678899999999999999999999999988
No 35
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.92 E-value=4.5e-09 Score=82.74 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=71.5
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
||+|++.++.....+..+...|+..|.++++..... .++ ..+||+
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~---------------------------------~~~--l~~~d~ 46 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR---------------------------------PGD--LPDCDA 46 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC---------------------------------hHH--hccCCE
Confidence 899999999999999999999999998766654311 012 237999
Q ss_pred EEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 90 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 90 liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|++|||.... .+..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus 47 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 47 LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 9999996532 12244568999999999999999999999999987
No 36
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.85 E-value=3.8e-09 Score=85.94 Aligned_cols=99 Identities=26% Similarity=0.357 Sum_probs=67.2
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+|+.++|.+ --.....+|+.+|+++..+..+. .. . .+....+||
T Consensus 2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~d------------------l~--------~-----~~~~l~~~~ 48 (259)
T PF13507_consen 2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHIND------------------LL--------S-----GESDLDDFD 48 (259)
T ss_dssp -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCH------------------HH--------T-----TS--GCC-S
T ss_pred CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEe------------------cc--------c-----ccCchhhCc
Confidence 599999999987 33344568899999988775421 00 0 011335899
Q ss_pred EEEEcCCCCccc-c----------cCChHHHHHHHHHHhC-CCeEEEEehHHHHHHhCcccCCc
Q 027708 89 GLVIPGGRAPEY-L----------AMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGR 140 (220)
Q Consensus 89 ~liipGG~~~~~-~----------~~~~~l~~~l~~~~~~-g~~i~aic~G~~~La~aglL~g~ 140 (220)
+|++|||.+..+ + ..++.+.+.|++|.++ |++|.+||+|.++|.++|||.|.
T Consensus 49 ~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~ 112 (259)
T PF13507_consen 49 GLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG 112 (259)
T ss_dssp EEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred EEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence 999999975321 1 2346678899999999 99999999999999999999983
No 37
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.81 E-value=3.5e-08 Score=65.52 Aligned_cols=91 Identities=32% Similarity=0.569 Sum_probs=71.3
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|+++.+++....++..+.+.|+..++.+.+++..... ... .....++|++
T Consensus 1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-------------~~~~~~~~~l 50 (92)
T cd03128 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGP-----------------VES-------------DVDLDDYDGL 50 (92)
T ss_pred CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCc-----------------ccc-------------cCCcccCCEE
Confidence 4678888888889999999999999999888776431 111 1234589999
Q ss_pred EEcCCCCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708 91 VIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 131 (220)
Q Consensus 91 iipGG~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L 131 (220)
++|||..... ...+....+|++++++++++++++|.|+.++
T Consensus 51 ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 51 ILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred EECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 9999976433 2247899999999999999999999998753
No 38
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.75 E-value=4.8e-08 Score=76.22 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=63.7
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+|+...|-. ......|+.+|.++..+++. ++ .++||
T Consensus 2 m~~~i~~~~g~~----~~~~~~l~~~g~~~~~~~~~-----------------------------------~~--l~~~d 40 (189)
T PRK13525 2 MKIGVLALQGAV----REHLAALEALGAEAVEVRRP-----------------------------------ED--LDEID 40 (189)
T ss_pred CEEEEEEcccCH----HHHHHHHHHCCCEEEEeCCh-----------------------------------hH--hccCC
Confidence 589999998743 33456788888877666421 11 24799
Q ss_pred EEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.|++|||.... .+..+..+.++++++.+++++|.+||.|..+|+.+
T Consensus 41 giii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 41 GLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred EEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 99999996532 12345567899999999999999999999999974
No 39
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.59 E-value=1.6e-07 Score=75.83 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=64.8
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+||...|- +......|+..|.++.+++.. +++ .++|
T Consensus 2 m~igVLa~qG~----~~e~~~aL~~lG~ev~~v~~~-----------------------------------~~L--~~~D 40 (248)
T PLN02832 2 MAIGVLALQGS----FNEHIAALRRLGVEAVEVRKP-----------------------------------EQL--EGVS 40 (248)
T ss_pred cEEEEEeCCCc----hHHHHHHHHHCCCcEEEeCCH-----------------------------------HHh--ccCC
Confidence 58999999994 444468888888877666431 122 3789
Q ss_pred EEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||+|||.+. ..+.....+.+.|+++.++|+|+.++|.|..+|++.
T Consensus 41 gLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 41 GLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred EEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 9999998642 224444468899999988999999999999999875
No 40
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.53 E-value=6e-07 Score=70.56 Aligned_cols=77 Identities=30% Similarity=0.419 Sum_probs=58.4
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCc---cc
Q 027708 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP---EY 100 (220)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~---~~ 100 (220)
+..-.+.|+++|.++.++++..+ +++ +++|+||+|||... ..
T Consensus 13 y~e~~~~l~~~G~~v~~~s~~~~---------------------------------~~l--~~~D~lilPGG~~~~~~~~ 57 (198)
T cd03130 13 YPENLELLEAAGAELVPFSPLKD---------------------------------EEL--PDADGLYLGGGYPELFAEE 57 (198)
T ss_pred cHHHHHHHHHCCCEEEEECCCCC---------------------------------CCC--CCCCEEEECCCchHHHHHH
Confidence 33446778888988888765311 122 25999999998643 34
Q ss_pred ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708 101 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135 (220)
Q Consensus 101 ~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag 135 (220)
+.++..+.+.|+++.++|++|.+||.|.++|++.-
T Consensus 58 L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 58 LSANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 55667899999999999999999999999998753
No 41
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.51 E-value=1.7e-06 Score=69.85 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=65.5
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
||.|+....++..+. ..+.++.+|+++.+.....+ -. +.. +..+||+
T Consensus 2 ~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g------------------------~~------~p~-~~~~~d~ 48 (235)
T PRK08250 2 RVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAG------------------------EA------LPE-NADGFDL 48 (235)
T ss_pred eEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCC------------------------CC------CCC-CccccCE
Confidence 799999998885555 46677888988777543211 00 110 2247999
Q ss_pred EEEcCCCCc-cc-ccCC-----hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 90 LVIPGGRAP-EY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 90 liipGG~~~-~~-~~~~-----~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|||.||+.. .. .... ....+||+++.+.+++|.+||.|..+|+.+
T Consensus 49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 999999642 21 1112 467899999999999999999999999986
No 42
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.46 E-value=6.5e-07 Score=70.13 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=64.0
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|+|+.|+... .+..+...+...|.++.++++.. + +.++|+|
T Consensus 1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~-----------------------------------~--~~~~d~l 41 (194)
T cd01750 1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE-----------------------------------G--LGDADLI 41 (194)
T ss_pred CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC-----------------------------------C--CCCCCEE
Confidence 4677776544 55666778888888888876531 1 2478999
Q ss_pred EEcCCCCcc-ccc--CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708 91 VIPGGRAPE-YLA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135 (220)
Q Consensus 91 iipGG~~~~-~~~--~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag 135 (220)
++|||.... .+. ++..+.+.|+++.++|++|.+||.|..+|++.-
T Consensus 42 ilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 42 ILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred EECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 999997432 121 245688999999999999999999999998764
No 43
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.46 E-value=6.7e-07 Score=70.38 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=63.8
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
||+|+=+..- .+....+.|+.+|.++.+++.. .++ .+||+
T Consensus 2 ~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~-----------------------------------~~~--~~~d~ 41 (200)
T PRK13143 2 MIVIIDYGVG---NLRSVSKALERAGAEVVITSDP-----------------------------------EEI--LDADG 41 (200)
T ss_pred eEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH-----------------------------------HHH--ccCCE
Confidence 7888877643 4467788999999987776310 112 37999
Q ss_pred EEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 90 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 90 liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|++|||.... .+...+.+.++|+++.++++|+.+||.|..+|+++
T Consensus 42 iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 42 IVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 9999964322 23345678899999999999999999999999985
No 44
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.45 E-value=3.5e-06 Score=67.87 Aligned_cols=94 Identities=22% Similarity=0.175 Sum_probs=68.1
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
||+|.|+-....+ .+..+.+.|+..|..++++....+. . ...+ ..+|
T Consensus 2 m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~-------------------------~----~~~~--~~~~ 48 (234)
T PRK07053 2 MKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD-------------------------L----ETLD--ALEP 48 (234)
T ss_pred CceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc-------------------------c----CCCC--ccCC
Confidence 3688888766555 6667899999999988777543210 0 0111 2369
Q ss_pred cEEEEcCCCC-ccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~-~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.|||+||+. +.. ...-..+.++|+++.+.+++|.+||.|..+|+++
T Consensus 49 d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 49 DLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred CEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 9999999863 221 1223578899999999999999999999999987
No 45
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.41 E-value=5.6e-07 Score=69.87 Aligned_cols=83 Identities=28% Similarity=0.422 Sum_probs=62.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|+|++.+|..... .+.|+..|.++..+++.. + ..++|.|
T Consensus 1 igvl~~qg~~~e~----~~~l~~~g~~v~~v~~~~-----------------------------------~--l~~~dgi 39 (183)
T cd01749 1 IGVLALQGDFREH----IRALERLGVEVIEVRTPE-----------------------------------D--LEGIDGL 39 (183)
T ss_pred CEEEEecCCcHHH----HHHHHHCCCeEEEECCHH-----------------------------------H--hccCCEE
Confidence 6788888765432 288999998887775410 1 2379999
Q ss_pred EEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 91 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 91 iipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|+|||.... ....+..+.++|+++.++++++.++|.|..+|+++
T Consensus 40 ii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~ 85 (183)
T cd01749 40 IIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE 85 (183)
T ss_pred EECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 999986421 12344567899999999999999999999999875
No 46
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.40 E-value=2.1e-06 Score=82.79 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCeEEEEecCCCC-chhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCC--CC
Q 027708 8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI--DP 84 (220)
Q Consensus 8 ~~kI~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~--~~ 84 (220)
++||+|+.++|.+ +.|.. .+|..+|+++..+..+.-. ++ .+. .+++++ ..
T Consensus 977 kpkvaIl~~pGtNce~d~a---~Af~~aG~~~~~v~~~dl~-----------~~---~i~----------~s~~~~~~~l 1029 (1239)
T TIGR01857 977 KPRVVIPVFPGTNSEYDSA---KAFEKEGAEVNLVIFRNLN-----------EE---ALV----------ESVETMVDEI 1029 (1239)
T ss_pred CCeEEEEECCCCCCHHHHH---HHHHHcCCceEEEEEecCc-----------cc---ccc----------cchhhhhccc
Confidence 5799999999987 34444 4666799887666542100 00 000 011111 23
Q ss_pred CCccEEEEcCCCCccc-----------ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCc
Q 027708 85 TKYDGLVIPGGRAPEY-----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 140 (220)
Q Consensus 85 ~~~D~liipGG~~~~~-----------~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~ 140 (220)
.+||+|++|||.+..+ +..++.+.+-+++|+++++++.+||+|-++|.+.|||.+.
T Consensus 1030 ~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1030 DKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred ccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence 5899999999975321 2456889999999999999999999999999999999863
No 47
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.34 E-value=3.7e-06 Score=81.70 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=73.9
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.+||+|+.++|.+- -.....+|..+|+++..+..+. +. .| .....+|
T Consensus 1037 ~pkVaVl~~pGtN~--~~e~~~Af~~aGf~~~~V~~~d-------------------l~--~~----------~~~L~~~ 1083 (1307)
T PLN03206 1037 KPKVAIIREEGSNG--DREMAAAFYAAGFEPWDVTMSD-------------------LL--NG----------RISLDDF 1083 (1307)
T ss_pred CCeEEEEECCCCCC--HHHHHHHHHHcCCceEEEEeee-------------------cc--cc----------cccccce
Confidence 47999999999882 2333457778998876654321 00 00 1123479
Q ss_pred cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHHhCcccCCce
Q 027708 88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAADVVKGRK 141 (220)
Q Consensus 88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La~aglL~g~~ 141 (220)
+.|++|||.+.. .+..++.+.+.+++|+ +.++++.+||+|.++|.+.|||.|-+
T Consensus 1084 ~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206 1084 RGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred eEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence 999999997421 2346788999999999 55999999999999999999998753
No 48
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.30 E-value=1.6e-06 Score=65.96 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=62.0
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCC-CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
+||+||.+.|- +..=.+.+++++ .++..+-. .+++ ++.
T Consensus 1 m~IGVLalQG~----v~EH~~~l~~~~~~e~~~Vk~-----------------------------------~~dL--~~~ 39 (194)
T COG0311 1 MKIGVLALQGA----VEEHLEALEKAGGAEVVEVKR-----------------------------------PEDL--EGV 39 (194)
T ss_pred CeEEEEEeccc----HHHHHHHHHhhcCCceEEEcC-----------------------------------HHHh--ccC
Confidence 38999999994 444455666664 54433321 1232 479
Q ss_pred cEEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 88 DGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 88 D~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
|+||||||.+. ..+...-.+.+-|+++..+|+|+.+.|+|..+|++
T Consensus 40 d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak 87 (194)
T COG0311 40 DGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAK 87 (194)
T ss_pred cEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence 99999999863 23556667889999999999999999999999996
No 49
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=98.28 E-value=3e-06 Score=67.14 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=66.6
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+|+-+..- .+......|+..|.++.+++.. +++ .++|
T Consensus 2 ~~v~iid~~~G---N~~sl~~al~~~g~~v~vv~~~-----------------------------------~~l--~~~d 41 (210)
T CHL00188 2 MKIGIIDYSMG---NLHSVSRAIQQAGQQPCIINSE-----------------------------------SEL--AQVH 41 (210)
T ss_pred cEEEEEEcCCc---cHHHHHHHHHHcCCcEEEEcCH-----------------------------------HHh--hhCC
Confidence 58999999833 4566677888889887776321 112 3689
Q ss_pred EEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC---------cccCCceE
Q 027708 89 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKC 142 (220)
Q Consensus 89 ~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a---------glL~g~~~ 142 (220)
.||+||+..+.. ...+..+.+.|+++.++++++.+||.|.++|++. |+++|+-.
T Consensus 42 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~ 107 (210)
T CHL00188 42 ALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVK 107 (210)
T ss_pred EEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEE
Confidence 999999644321 1112346678888888999999999999999975 57777543
No 50
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.26 E-value=9.1e-06 Score=63.20 Aligned_cols=91 Identities=27% Similarity=0.371 Sum_probs=63.2
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCC---CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
||+|+..+.... .....+.|++++ .++++...... + ...+ ..+
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-----------------------------~-~~~~--~~~ 46 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-----------------------------E-LLPD--LDD 46 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-----------------------------C-CCCC--ccc
Confidence 477777765543 667778888877 45555433211 0 0122 348
Q ss_pred ccEEEEcCCCCcc-c--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 87 YDGLVIPGGRAPE-Y--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 87 ~D~liipGG~~~~-~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
||+|+++||.... . ....+.+.++|+++.++++++.+||.|..+|+.+
T Consensus 47 ~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 47 YDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred CCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 9999999997532 1 1223678999999999999999999999999876
No 51
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.26 E-value=5.3e-06 Score=80.99 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCeEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 8 KRSVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 8 ~~kI~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
++||+|+.++|++- .|. ..+|..+|+++..+..+. +.. ...+..+
T Consensus 1055 ~p~vail~~pG~N~~~e~---~~Af~~aGf~~~~v~~~d---------------------------l~~----~~~~l~~ 1100 (1310)
T TIGR01735 1055 RPKVAILREQGVNGDREM---AAAFDRAGFEAWDVHMSD---------------------------LLA----GRVHLDE 1100 (1310)
T ss_pred CceEEEEECCCCCCHHHH---HHHHHHhCCCcEEEEEec---------------------------ccc----CCcchhh
Confidence 36999999999983 333 347778898766654321 000 0112347
Q ss_pred ccEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHH-hCcccCCc
Q 027708 87 YDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR 140 (220)
Q Consensus 87 ~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La-~aglL~g~ 140 (220)
|+.|++|||.+.. .+..++.+.+.+++|+ ++++++.+||+|.++|. ..|||.|.
T Consensus 1101 ~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1101 FRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred eeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 9999999996421 1346788999999999 88999999999999999 99999874
No 52
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.25 E-value=7.8e-06 Score=79.94 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
++||+|+.++|.+- -.....+|..+|+++..+..+. +... .....+|
T Consensus 1035 ~pkv~il~~pG~N~--~~e~~~Af~~aG~~~~~v~~~d---------------------------l~~~----~~~l~~~ 1081 (1290)
T PRK05297 1035 RPKVAILREQGVNS--HVEMAAAFDRAGFDAIDVHMSD---------------------------LLAG----RVTLEDF 1081 (1290)
T ss_pred CCeEEEEECCCCCC--HHHHHHHHHHcCCCeEEEEeec---------------------------CcCC----CCChhhC
Confidence 46999999999882 2333457779999876664321 0000 0123589
Q ss_pred cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHHhCc-ccCC
Q 027708 88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG 139 (220)
Q Consensus 88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La~ag-lL~g 139 (220)
+.|++|||.+.. .+..|+.+.+.+++|+ ++++++.+||+|.++|.+.| |+.|
T Consensus 1082 ~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1082 KGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred cEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 999999996421 1245788999999988 78999999999999999998 7765
No 53
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.23 E-value=9.2e-06 Score=71.67 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=66.3
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
.+|+|.-.+-|+. -+..=.+.|+..|.++..+++-.. ++ .+++|
T Consensus 246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~---------------------------------~~--l~~~D 289 (451)
T PRK01077 246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD---------------------------------EA--LPDCD 289 (451)
T ss_pred ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC---------------------------------CC--CCCCC
Confidence 4888888774432 222334677788888877765211 11 23799
Q ss_pred EEEEcCCCC---cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~---~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+|++|||.. ...+..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus 290 ~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 290 GLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred EEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 999999963 2345677889999999999999999999999999875
No 54
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.23 E-value=1.9e-05 Score=63.84 Aligned_cols=94 Identities=24% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
++||.||.-.+++ ....+.+.|+..|.++++..+..+ - ..| ++ ..+|
T Consensus 7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~------------------------~-~~p----~~--l~~~ 53 (239)
T PRK06490 7 KRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLG------------------------D-PLP----DT--LEDH 53 (239)
T ss_pred CceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCC------------------------C-CCC----Cc--cccc
Confidence 4689988877766 555678899999998877654321 0 001 12 2479
Q ss_pred cEEEEcCCCCc-cc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~~-~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.+||.||+.. .. ..-...+.+||+++.+.++|+.+||-|..+|+.+
T Consensus 54 dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 54 AGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 99999998752 21 1112457899999999999999999999999987
No 55
>PHA03366 FGAM-synthase; Provisional
Probab=98.14 E-value=1.8e-05 Score=77.36 Aligned_cols=97 Identities=21% Similarity=0.174 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.+||+|+.++|.+ .-.....+|..+|+++..+..+. +... .. ..+|
T Consensus 1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d---------------------------L~~~----~~-l~~f 1073 (1304)
T PHA03366 1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEE---------------------------LKDG----TF-LDEF 1073 (1304)
T ss_pred CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeec---------------------------CCCC----Cc-cccc
Confidence 5799999999998 23334457778999877765421 0010 11 3479
Q ss_pred cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEeh-HHHHHHhCcccC
Q 027708 88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVK 138 (220)
Q Consensus 88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~-G~~~La~aglL~ 138 (220)
+.|++|||.+.. .+..|+.+.+.+++|+ ++++.+.+||+ |.++|.+.|+|.
T Consensus 1074 ~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1074 SGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred eEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 999999997632 1347889999999999 56999999999 999999999994
No 56
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.12 E-value=6.6e-06 Score=64.58 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccc-
Q 027708 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL- 101 (220)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~- 101 (220)
.+......|+..|.++.+++.. .++ .++|.|||||+..+...
T Consensus 10 ~~~~~~~~l~~~g~~v~v~~~~-----------------------------------~~l--~~~d~iiipG~~~~~~~~ 52 (198)
T cd01748 10 NLRSVANALERLGAEVIITSDP-----------------------------------EEI--LSADKLILPGVGAFGDAM 52 (198)
T ss_pred hHHHHHHHHHHCCCeEEEEcCh-----------------------------------HHh--ccCCEEEECCCCcHHHHH
Confidence 5666788999999887776421 012 36999999987443211
Q ss_pred --cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 102 --AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 102 --~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.....+.++++++.+++++|.+||.|..+|+.+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 123457899999999999999999999999987
No 57
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.12 E-value=1.6e-05 Score=61.96 Aligned_cols=87 Identities=14% Similarity=0.300 Sum_probs=60.0
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
|||+|+ |..+. .-....+.|++.|.++.++..... ..+++ .++|
T Consensus 2 ~~ilii--d~~ds-f~~~i~~~l~~~g~~~~v~~~~~~-------------------------------~~~~l--~~~d 45 (190)
T PRK06895 2 TKLLII--NNHDS-FTFNLVDLIRKLGVPMQVVNVEDL-------------------------------DLDEV--ENFS 45 (190)
T ss_pred cEEEEE--eCCCc-hHHHHHHHHHHcCCcEEEEECCcc-------------------------------ChhHh--ccCC
Confidence 355555 43333 334478999999998887754210 11222 3699
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.|||.||++... ..+.+.++|++ .+.++|+.+||-|.++|+.+
T Consensus 46 ~iIi~gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 46 HILISPGPDVPR--AYPQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred EEEECCCCCChH--HhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 999999876322 24567888886 67899999999999999877
No 58
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.11 E-value=7.3e-06 Score=64.71 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=59.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|+|+-+.. .....+.+.|+..|.+++++... +++ .+||.|
T Consensus 2 i~~~d~~~---~~~~~i~~~l~~~G~~v~~~~~~-----------------------------------~~l--~~~d~i 41 (205)
T PRK13141 2 IAIIDYGM---GNLRSVEKALERLGAEAVITSDP-----------------------------------EEI--LAADGV 41 (205)
T ss_pred EEEEEcCC---chHHHHHHHHHHCCCeEEEECCH-----------------------------------HHh--ccCCEE
Confidence 55555543 35577889999999887775320 122 369999
Q ss_pred EEcCCCCccc-c--cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 91 VIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 91 iipGG~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|||||..... . ...+.+.++|+++.++++++.+||.|.++|++.
T Consensus 42 iipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 42 ILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred EECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 9999743221 1 112357899999999999999999999999986
No 59
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.07 E-value=1.6e-05 Score=63.07 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=56.4
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCC--eEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGV--SVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~--~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
+||+|+=|..-+ +......|++.|. ++.+++. .+++ .+
T Consensus 2 ~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~~-----------------------------------~~~l--~~ 41 (209)
T PRK13146 2 MTVAIIDYGSGN---LRSAAKALERAGAGADVVVTAD-----------------------------------PDAV--AA 41 (209)
T ss_pred CeEEEEECCCCh---HHHHHHHHHHcCCCccEEEECC-----------------------------------HHHh--cC
Confidence 589988886544 4455678888887 3333221 1222 47
Q ss_pred ccEEEEcCCCCccc----ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708 87 YDGLVIPGGRAPEY----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135 (220)
Q Consensus 87 ~D~liipGG~~~~~----~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag 135 (220)
+|.|||||+..... +........+++...+.++||.+||.|..+|++++
T Consensus 42 ~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 42 ADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred CCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 99999999754221 11122233445555578999999999999999983
No 60
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.06 E-value=2.8e-05 Score=75.75 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.+||+|+.++|.+ --.....+|..+|+++..+..+. +..... .++|
T Consensus 929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d---------------------------l~~~~~-----l~~f 974 (1202)
T TIGR01739 929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITE---------------------------LKKTDF-----LDTF 974 (1202)
T ss_pred CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEecc---------------------------CCCCCc-----hhhe
Confidence 4689999999998 33334457778999877765431 000001 2379
Q ss_pred cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEeh-HHHHHHhCcccCC
Q 027708 88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVKG 139 (220)
Q Consensus 88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~-G~~~La~aglL~g 139 (220)
+.|++|||.+-. .+..++.+.+.+++|+ +.++++.+||+ |.++|.+.|+|.+
T Consensus 975 ~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 975 SGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred EEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence 999999997521 1346889999999999 55999999999 9999999999854
No 61
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.03 E-value=2.2e-05 Score=60.58 Aligned_cols=48 Identities=33% Similarity=0.488 Sum_probs=40.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+||.|+++||++.. .+.....++++++.++++||.+||.|..+|+.+
T Consensus 38 ~~~dgiil~GG~~~~--~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 38 LDPDGIFLSNGPGDP--ALLDEAIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred cCCCEEEECCCCCCh--hHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 379999999997522 234678899999999999999999999999875
No 62
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.99 E-value=6.2e-05 Score=60.81 Aligned_cols=50 Identities=28% Similarity=0.514 Sum_probs=40.3
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+||.|||.||+...+ ..-...+.+||+++.++++||.+||.|..+|+.+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 4799999999975321 1112567899999999999999999999999876
No 63
>PRK05665 amidotransferase; Provisional
Probab=97.97 E-value=0.00012 Score=59.23 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=40.4
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+||++||.||...-+ ..-...+.+||++.+++++++.+||-|..+|+.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 3799999999964222 1112578899999999999999999999999876
No 64
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.89 E-value=1.3e-05 Score=60.64 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=44.6
Q ss_pred CCCccEEEEcCCCCc---ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708 84 PTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135 (220)
Q Consensus 84 ~~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag 135 (220)
++++|+|++|||... ..+.++..+.+.|+++.++|++|.++|.|-.+|.+.=
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 568999999999753 2356788899999999999999999999999998753
No 65
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.85 E-value=6.4e-05 Score=58.51 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=53.8
Q ss_pred hhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCccccc
Q 027708 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA 102 (220)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~ 102 (220)
-.......|+..|.++.++..+.. .+++...++|.||+|||....+
T Consensus 10 ~~~~l~~~l~~~g~~~~~~~~~~~--------------------------------~~~~~~~~~~glii~Gg~~~~~-- 55 (188)
T TIGR00888 10 YTQLIARRLRELGVYSELVPNTTP--------------------------------LEEIREKNPKGIILSGGPSSVY-- 55 (188)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCC--------------------------------HHHHhhcCCCEEEECCCCCCcC--
Confidence 445667888888988877643211 1111112467999999975332
Q ss_pred CChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+.....|+++..+.++||.+||.|..+|+.+
T Consensus 56 -~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 56 -AENAPRADEKIFELGVPVLGICYGMQLMAKQ 86 (188)
T ss_pred -cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence 2234678888889999999999999999876
No 66
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.84 E-value=2.6e-05 Score=59.85 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=43.2
Q ss_pred CccEEEEcCCCCc--ccccCChHHHHHHHHHHhCC-CeEEEEehHHHHHHhC------cccCCceEecCC
Q 027708 86 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA------DVVKGRKCTAYP 146 (220)
Q Consensus 86 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~g-~~i~aic~G~~~La~a------glL~g~~~T~~~ 146 (220)
+.|.||||||.+. ..+.....+.+-|+++.+.| +||.+.|+|..+|++. ..|.+..+|+-.
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V~R 102 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITVRR 102 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEEET
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEEEc
Confidence 6899999999763 23455668999999999998 9999999999999973 245555666543
No 67
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.83 E-value=0.00011 Score=64.93 Aligned_cols=90 Identities=21% Similarity=0.294 Sum_probs=65.7
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
.||+|.-.+-|+.. +..=.+.|+..|.++..+++-.+ +++ +++|
T Consensus 245 ~~Iava~d~afnFy-~~~~~~~L~~~g~~~~~~~~~~d---------------------------------~~l--~~~d 288 (449)
T TIGR00379 245 VRIAVAQDQAFNFY-YQDNLDALTHNAAELVPFSPLED---------------------------------TEL--PDVD 288 (449)
T ss_pred cEEEEEechhhcee-HHHHHHHHHHCCCEEEEECCccC---------------------------------CCC--CCCC
Confidence 47888887655431 12334566677888887775321 122 3789
Q ss_pred EEEEcCCCCc---ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~---~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+|+||||... ..+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus 289 ~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 289 AVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred EEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 9999999742 235567889999999999999999999999999875
No 68
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.78 E-value=6.4e-05 Score=58.95 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=52.1
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG 89 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~ 89 (220)
+|+|+=|..-+ +......|++.|.++.++... +++ .++|.
T Consensus 2 ~i~iid~g~gn---~~s~~~~l~~~g~~~~~v~~~-----------------------------------~~~--~~~d~ 41 (196)
T PRK13170 2 NVVIIDTGCAN---LSSVKFAIERLGYEPVVSRDP-----------------------------------DVI--LAADK 41 (196)
T ss_pred eEEEEeCCCch---HHHHHHHHHHCCCeEEEECCH-----------------------------------HHh--CCCCE
Confidence 67777654433 444555888888877776321 122 35899
Q ss_pred EEEcCCCCcccc---cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 90 LVIPGGRAPEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 90 liipGG~~~~~~---~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
||+||...+... .....+.+++++ .++||.+||.|.++|+.+
T Consensus 42 iIlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 42 LFLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER 86 (196)
T ss_pred EEECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence 999995433221 111234555554 489999999999999976
No 69
>PRK00784 cobyric acid synthase; Provisional
Probab=97.76 E-value=8.6e-05 Score=66.21 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=40.8
Q ss_pred CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+++|.|++|||.... .+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus 289 ~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 289 PDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred ccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 379999999997432 13345568899999999999999999999999874
No 70
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.76 E-value=0.00016 Score=58.58 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=35.1
Q ss_pred CCccEEEEcCCCCcc-cc--cCCh---HH----HHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPE-YL--AMND---SV----IDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~-~~--~~~~---~l----~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+||.|||.||.... .- ...+ .+ .++++.....++||.+||.|.++|+.+
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 479999999997422 11 1122 23 344555558999999999999999987
No 71
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.76 E-value=9.1e-05 Score=57.67 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=57.3
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI 92 (220)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii 92 (220)
||+-|+++.... ...+.|+..|.++.++..+.. +++++...+||.||+
T Consensus 2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~-------------------------------~~~~~~~~~~d~iil 49 (187)
T PRK08007 2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL-------------------------------TLADIDALKPQKIVI 49 (187)
T ss_pred EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC-------------------------------CHHHHHhcCCCEEEE
Confidence 556666653332 367788888988877754311 111222236899999
Q ss_pred cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||++... +.....++++. +..++||.+||-|.++|+.+
T Consensus 50 s~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 50 SPGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred cCCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 99986322 23345566665 56789999999999999876
No 72
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.75 E-value=7e-05 Score=58.85 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=38.3
Q ss_pred CccEEEEcCCCCccc-c--cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
++|.||+||+..+.. . .....+.++|+++.+.++||.+||.|..+|+.+
T Consensus 37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 699999999754321 1 112346788999999999999999999999986
No 73
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.75 E-value=0.00014 Score=57.80 Aligned_cols=48 Identities=23% Similarity=0.561 Sum_probs=39.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
..||.|||.||++.. .+.....+|++++.++++||.+||.|.++|+.+
T Consensus 45 ~~~dgliisGGp~~~--~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a 92 (214)
T PRK07765 45 AQFDGVLLSPGPGTP--ERAGASIDMVRACAAAGTPLLGVCLGHQAIGVA 92 (214)
T ss_pred cCCCEEEECCCCCCh--hhcchHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence 369999999997532 234556799999999999999999999999876
No 74
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.75 E-value=0.00011 Score=57.60 Aligned_cols=74 Identities=24% Similarity=0.217 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCccc--
Q 027708 23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY-- 100 (220)
Q Consensus 23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~-- 100 (220)
.+......|+..|.+++++..+ ++ .+++|.||+||+.....
T Consensus 10 n~~~l~~~l~~~g~~v~v~~~~-----------------------------------~~--l~~~d~lii~G~~~~~~~~ 52 (196)
T TIGR01855 10 NLGSVKRALKRVGAEPVVVKDS-----------------------------------KE--AELADKLILPGVGAFGAAM 52 (196)
T ss_pred HHHHHHHHHHHCCCcEEEEcCH-----------------------------------HH--hccCCEEEECCCCCHHHHH
Confidence 6778888999888887776421 01 23699999999543221
Q ss_pred --ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 101 --LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 101 --~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+.... ...+++++.+.+++|.++|.|.++|+.+
T Consensus 53 ~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 53 ARLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred HHHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence 11112 3344477888999999999999999998
No 75
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.74 E-value=9.6e-05 Score=57.68 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=56.2
Q ss_pred EEecCCCCchhhH-HHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEE
Q 027708 13 LLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLV 91 (220)
Q Consensus 13 il~~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~li 91 (220)
||+.|..+ +++ ...+.|+..|.++.++..+.. .++++....+|.||
T Consensus 2 il~id~~d--sf~~nl~~~l~~~~~~~~v~~~~~~-------------------------------~~~~~~~~~~~~ii 48 (191)
T PRK06774 2 LLLIDNYD--SFTYNLYQYFCELGTEVMVKRNDEL-------------------------------QLTDIEQLAPSHLV 48 (191)
T ss_pred EEEEECCC--chHHHHHHHHHHCCCcEEEEeCCCC-------------------------------CHHHHHhcCCCeEE
Confidence 45555554 333 367888889998888754321 11222223689999
Q ss_pred EcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 92 IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 92 ipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+-||++... +......+++. +++++||.+||.|.++|+.+
T Consensus 49 lsgGP~~~~--~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~ 88 (191)
T PRK06774 49 ISPGPCTPN--EAGISLAVIRH-FADKLPILGVCLGHQALGQA 88 (191)
T ss_pred EcCCCCChH--hCCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 999985321 22334566654 56799999999999999887
No 76
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00043 Score=54.33 Aligned_cols=50 Identities=32% Similarity=0.508 Sum_probs=41.5
Q ss_pred CCccEEEEcCCCCcccccC--ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~--~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.++|++||.||+..-+... .+...+||++....+++|.+||.|.++||.+
T Consensus 44 ~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 44 DSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred cCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 3569999999984322234 6889999999999999999999999999865
No 77
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00012 Score=56.78 Aligned_cols=86 Identities=24% Similarity=0.267 Sum_probs=62.4
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
++|+|+=|.-= .+......|+++|+++.+.+. . +++ ...|
T Consensus 2 ~~i~IIDyg~G---NL~Sv~~Aler~G~~~~vs~d-~----------------------------------~~i--~~AD 41 (204)
T COG0118 2 MMVAIIDYGSG---NLRSVKKALERLGAEVVVSRD-P----------------------------------EEI--LKAD 41 (204)
T ss_pred CEEEEEEcCcc---hHHHHHHHHHHcCCeeEEecC-H----------------------------------HHH--hhCC
Confidence 57888877643 566777788899987765432 1 122 3799
Q ss_pred EEEEcCCCC---cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~---~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||+||=.. +..-.+...+.+.|++....++|+.+||-|.++|.+.
T Consensus 42 ~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~ 90 (204)
T COG0118 42 KLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFER 90 (204)
T ss_pred EEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence 999999322 1221234488999999999999999999999999765
No 78
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.67 E-value=0.0002 Score=55.84 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=35.9
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
++|.|||.||++... +.....++++++ ++++||.+||.|.++|+.+
T Consensus 43 ~~d~iilsgGpg~p~--~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 43 LPLLIVISPGPCTPN--EAGISLEAIRHF-AGKLPILGVCLGHQAMGQA 88 (188)
T ss_pred CCCEEEEcCCCCChh--hcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence 589999999985321 233447888877 6789999999999999876
No 79
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.66 E-value=0.00028 Score=63.37 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.++|+|+=|..= .+......|+..|+++.++.. . ++ ..++
T Consensus 6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~-~----------------------------------~~--l~~~ 45 (538)
T PLN02617 6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQT-P----------------------------------ED--ILNA 45 (538)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECC-h----------------------------------hh--hccC
Confidence 468887766543 445556788888888765532 0 12 2479
Q ss_pred cEEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.||+||+..... ...+..+.+.|+++.+.++|+.+||.|.++|+++
T Consensus 46 D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 46 DRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred CEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 9999999765322 1123347788999999999999999999999974
No 80
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.61 E-value=0.00037 Score=53.77 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=49.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 027708 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM 103 (220)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~ 103 (220)
.......|+..|..+.++..... .++....++|.||+|||....+...
T Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~--------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 11 THLIARRVRELGVYSEILPNTTP--------------------------------LEEIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred HHHHHHHHHhcCceEEEecCCCC--------------------------------hhhhcccCCCEEEECCCcccccccc
Confidence 34467888888987777643210 1111234799999999975322111
Q ss_pred ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 104 NDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 104 ~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+.+. ++..+.++|+.+||.|.++|+.+
T Consensus 59 ~~~~~---~~~~~~~~PilGIC~G~Qll~~~ 86 (181)
T cd01742 59 APRVD---PEIFELGVPVLGICYGMQLIAKA 86 (181)
T ss_pred cchhh---HHHHhcCCCEEEEcHHHHHHHHh
Confidence 23333 44445699999999999999985
No 81
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.54 E-value=0.00038 Score=54.23 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=55.4
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI 92 (220)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii 92 (220)
|++.|.. ..=.....+.|+..|.++.++...... ...++. .++|.||+
T Consensus 2 iliid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~~----------------------------~~~~~~---~~~dglIl 49 (189)
T PRK05670 2 ILLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEIT----------------------------LEEIEA---LNPDAIVL 49 (189)
T ss_pred EEEEECC-CchHHHHHHHHHHCCCcEEEEECCCCC----------------------------HHHHHh---CCCCEEEE
Confidence 3444433 333455677888889988777543210 001122 24899999
Q ss_pred cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||++... +.....+++++. ..++||.+||.|.++|+.+
T Consensus 50 sgGpg~~~--d~~~~~~~l~~~-~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 50 SPGPGTPA--EAGISLELIREF-AGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred cCCCCChH--HcchHHHHHHHh-cCCCCEEEECHHHHHHHHH
Confidence 98875321 223456677764 5779999999999999876
No 82
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.54 E-value=0.00047 Score=58.98 Aligned_cols=87 Identities=24% Similarity=0.283 Sum_probs=60.2
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+++=+ |+. ......|.+.|..+.++..+. +++++...++|
T Consensus 178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~--------------------------------~~~~i~~~~~D 220 (360)
T PRK12564 178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT--------------------------------TAEEILALNPD 220 (360)
T ss_pred CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC--------------------------------CHHHHHhcCCC
Confidence 46666554 332 356778888888887764321 11122112699
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||++||++.. .+.+..+++++++.++++||.+||.|.++|+.+
T Consensus 221 GIvLSgGPgdp--~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 221 GVFLSNGPGDP--AALDYAIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred EEEEeCCCCCh--HHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 99999997532 234678899999998899999999999998765
No 83
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.46 E-value=0.00057 Score=54.11 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=56.1
Q ss_pred CeEEEEec-CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 9 ~kI~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
+||+++=+ |+| .....+.|+..|..++++..+. .++++....|
T Consensus 2 ~~il~iD~~dsf----~~nl~~~l~~~g~~~~v~~~~~--------------------------------~~~~l~~~~~ 45 (208)
T PRK05637 2 THVVLIDNHDSF----VYNLVDAFAVAGYKCTVFRNTV--------------------------------PVEEILAANP 45 (208)
T ss_pred CEEEEEECCcCH----HHHHHHHHHHCCCcEEEEeCCC--------------------------------CHHHHHhcCC
Confidence 57655543 333 3447788999998887775421 1111112368
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.||+-||++... +.....++++++. .++||.+||.|.++|+.+
T Consensus 46 ~~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 46 DLICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred CEEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 9999988876321 2223456665543 579999999999999986
No 84
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=97.46 E-value=0.00049 Score=53.81 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=55.8
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI 92 (220)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii 92 (220)
|++-|..+.... ...+.|+..|+.+.++.....+ +. .+.+ .++|.+++
T Consensus 2 il~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~~-------------------------~~---~~~~---~~~~~iil 49 (193)
T PRK08857 2 LLMIDNYDSFTY-NLYQYFCELGAQVKVVRNDEID-------------------------ID---GIEA---LNPTHLVI 49 (193)
T ss_pred EEEEECCCCcHH-HHHHHHHHCCCcEEEEECCCCC-------------------------HH---HHhh---CCCCEEEE
Confidence 455565553322 3678889999988887543110 00 1122 25889999
Q ss_pred cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
-||++... ++....++++. .+.++||.+||-|.++|+.+
T Consensus 50 sgGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 50 SPGPCTPN--EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred eCCCCChH--HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 99874221 23334567765 57899999999999999876
No 85
>CHL00101 trpG anthranilate synthase component 2
Probab=97.45 E-value=0.00043 Score=54.01 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=33.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
++|.|||.||++... +.. +...+.+..+.++||.+||-|.++|+.+
T Consensus 43 ~~dgiiisgGpg~~~--~~~-~~~~i~~~~~~~~PiLGIClG~Qlla~~ 88 (190)
T CHL00101 43 NIRHIIISPGPGHPR--DSG-ISLDVISSYAPYIPILGVCLGHQSIGYL 88 (190)
T ss_pred CCCEEEECCCCCChH--HCc-chHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence 699999999986321 122 2333444567899999999999999885
No 86
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=97.42 E-value=0.0005 Score=53.87 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=54.9
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708 13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI 92 (220)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii 92 (220)
|++-|..+... ....+.|++.|.++.++..+.. .++++...+||.||+
T Consensus 2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~-------------------------------~~~~~~~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV-------------------------------TISDIENMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC-------------------------------CHHHHhhCCCCEEEE
Confidence 45555544222 2378889999998877754321 011111136899999
Q ss_pred cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||++... +.....+.++. ++.++||.+||-|.++|+.+
T Consensus 50 sgGP~~p~--~~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~ 88 (195)
T PRK07649 50 SPGPCSPN--EAGISMEVIRY-FAGKIPIFGVCLGHQSIAQV 88 (195)
T ss_pred CCCCCChH--hCCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 99985321 12234455554 35789999999999999876
No 87
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.40 E-value=0.0011 Score=57.15 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=60.0
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+++=+ |+. ......|++.|.++.++.... +.+++...++|
T Consensus 193 ~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~--------------------------------~~~~i~~~~~d 235 (382)
T CHL00197 193 LKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS--------------------------------PYQDILSYQPD 235 (382)
T ss_pred CEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC--------------------------------CHHHHhccCCC
Confidence 56776655 444 347788888899887773211 11122223699
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||+.||++.. ......++.++++.+.+.||.+||.|-.+|+.+
T Consensus 236 gIilSgGPg~p--~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 236 GILLSNGPGDP--SAIHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred EEEEcCCCCCh--hHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 99999997632 133456777888877789999999999999865
No 88
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.40 E-value=0.00059 Score=53.71 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=34.8
Q ss_pred CccEEEEcCCCCccc----ccCChHHHHHHHHH-HhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEY----LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~----~~~~~~l~~~l~~~-~~~g~~i~aic~G~~~La~a 134 (220)
.+|.||+||+..+.. +... .+...|+++ .++++||.+||.|.++|+.+
T Consensus 37 ~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 37 KADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred CCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 589999999866432 1111 234555554 57899999999999999987
No 89
>PLN02335 anthranilate synthase
Probab=97.39 E-value=0.00083 Score=53.71 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=57.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.++|+|+ |.. ..--....+.|++.|.++.++..+.. .++++....+
T Consensus 18 ~~~ilvi--D~~-dsft~~i~~~L~~~g~~~~v~~~~~~-------------------------------~~~~~~~~~~ 63 (222)
T PLN02335 18 NGPIIVI--DNY-DSFTYNLCQYMGELGCHFEVYRNDEL-------------------------------TVEELKRKNP 63 (222)
T ss_pred cCcEEEE--ECC-CCHHHHHHHHHHHCCCcEEEEECCCC-------------------------------CHHHHHhcCC
Confidence 4577777 432 22345578888999998888754210 1111111358
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.|||.||++... +.....+++++ ....+||.+||.|..+|+.+
T Consensus 64 d~iVisgGPg~p~--d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 64 RGVLISPGPGTPQ--DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred CEEEEcCCCCChh--hccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 9999999986322 12233555554 35679999999999999865
No 90
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.35 E-value=0.0013 Score=50.86 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.++|.||+.||.+... ++ .....+++...+++||.+||.|..+|+.+
T Consensus 41 ~~~dgvil~gG~~~~~--~~-~~~~~i~~~~~~~~PvlGIC~G~Qlla~~ 87 (184)
T cd01743 41 LNPDAIVISPGPGHPE--DA-GISLEIIRALAGKVPILGVCLGHQAIAEA 87 (184)
T ss_pred cCCCEEEECCCCCCcc--cc-hhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence 4799999988765321 22 24555666667889999999999999886
No 91
>PRK13566 anthranilate synthase; Provisional
Probab=97.34 E-value=0.0013 Score=61.12 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
++||+|+=+.. .-.....+.|+..|.++.++..... ...++ ..++
T Consensus 526 g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-----------------------------~~~~~---~~~~ 570 (720)
T PRK13566 526 GKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-----------------------------EEMLD---RVNP 570 (720)
T ss_pred CCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-----------------------------hhHhh---hcCC
Confidence 56777776653 3467888899999999888765321 00111 1369
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.||+.||++.. .+..+.+++++..++++||.+||-|.++|+.+
T Consensus 571 DgVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 571 DLVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred CEEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 999998877532 23346799999999999999999999999876
No 92
>PRK00758 GMP synthase subunit A; Validated
Probab=97.32 E-value=0.00088 Score=51.89 Aligned_cols=43 Identities=28% Similarity=0.568 Sum_probs=32.9
Q ss_pred Cc-cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KY-DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~-D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
++ |.||++||.... ....+.+|++ +.++||.+||.|.++|+.+
T Consensus 40 ~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a 83 (184)
T PRK00758 40 AFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA 83 (184)
T ss_pred hcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence 45 999999997422 2234566776 3589999999999999987
No 93
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.31 E-value=0.00056 Score=53.36 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=55.1
Q ss_pred EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708 11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL 90 (220)
Q Consensus 11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l 90 (220)
|+|+=|..-+ +......|++.|.++.++... +++ .++|.|
T Consensus 2 i~iidyg~gN---~~s~~~al~~~g~~~~~v~~~-----------------------------------~~l--~~~D~l 41 (192)
T PRK13142 2 IVIVDYGLGN---ISNVKRAIEHLGYEVVVSNTS-----------------------------------KII--DQAETI 41 (192)
T ss_pred EEEEEcCCcc---HHHHHHHHHHcCCCEEEEeCH-----------------------------------HHh--ccCCEE
Confidence 6777666544 455566777778777665321 122 368999
Q ss_pred EEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 91 VIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 91 iipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|+||+..... ......+.+.|++ ..++++.+||.|-++|++.
T Consensus 42 IlPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~ 86 (192)
T PRK13142 42 ILPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEH 86 (192)
T ss_pred EECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhh
Confidence 9999855321 1122246777777 5699999999999999875
No 94
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.31 E-value=0.00068 Score=59.37 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=39.6
Q ss_pred CCccEEEEcCCCCc---ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+++|+|++|||... ..+..+... +-|+++.++|++|.++|.|-.+|++.
T Consensus 273 p~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 273 PDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred CCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 37899999999742 224445445 88999999999999999999999875
No 95
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=97.28 E-value=0.0012 Score=56.39 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=58.1
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+++=+ |+. ......|.+.|..+.++..+. +++++....+|
T Consensus 174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~--------------------------------~~~~i~~~~pD 216 (358)
T TIGR01368 174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT--------------------------------DAEEIKKYNPD 216 (358)
T ss_pred cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC--------------------------------CHHHHHhhCCC
Confidence 35665544 433 356778888888877663211 11222112469
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||++||++.. ......+++++++.+ ++||.+||.|.++|+.+
T Consensus 217 GIiLSgGPgdp--~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 217 GIFLSNGPGDP--AAVEPAIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred EEEECCCCCCH--HHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 99999997632 235677888998887 99999999999999875
No 96
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.28 E-value=0.00086 Score=53.16 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=38.9
Q ss_pred CccEEEEcCCCCcc----cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~----~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
++|.||+||+.... .+ ....+.++|+++.+++++|.+||.|..+|+++
T Consensus 37 ~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 37 NSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred cCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 78999999986422 12 23358889999999999999999999999885
No 97
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.24 E-value=0.00046 Score=53.76 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=38.3
Q ss_pred CCccEEEEcCCCCccc---------------ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~---------------~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
..+|.||+|||.+... ...+....++++++.+.++||.+||.|.++|+.+
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 3699999999974211 0112345789999999999999999999998865
No 98
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.23 E-value=0.00049 Score=53.49 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=57.1
Q ss_pred hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 027708 24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM 103 (220)
Q Consensus 24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~ 103 (220)
.......|+..|.+++++...... ..+ .+ ...+||.++|+||.+... +
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~~-------------------------~~~---~~--~~~~~d~iii~Gg~~~~~--d 57 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSDF-------------------------EEP---LE--DLDDYDGIIISGGPGSPY--D 57 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGGH-------------------------HHH---HH--HTTTSSEEEEECESSSTT--S
T ss_pred HHHHHHHHHHCCCeEEEEECCCch-------------------------hhh---hh--hhcCCCEEEECCcCCccc--c
Confidence 345677888888888777543210 000 01 134799999999976432 2
Q ss_pred ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 104 NDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 104 ~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.....++++++.+.++|+.+||.|..+|+.+
T Consensus 58 ~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 58 IEGLIELIREARERKIPILGICLGHQILAHA 88 (192)
T ss_dssp HHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred ccccccccccccccceEEEEEeehhhhhHHh
Confidence 5788899999999999999999999999875
No 99
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.20 E-value=0.00093 Score=57.72 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=69.7
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
.||+|.-=.-|+ +=+-.-.+.|+..|.++..+||-.+ +++ +++.|
T Consensus 246 ~rIAVA~D~AF~-FyY~~nl~~Lr~~GAelv~FSPL~D---------------------------------~~l-P~~~D 290 (451)
T COG1797 246 VRIAVARDAAFN-FYYPENLELLREAGAELVFFSPLAD---------------------------------EEL-PPDVD 290 (451)
T ss_pred ceEEEEecchhc-cccHHHHHHHHHCCCEEEEeCCcCC---------------------------------CCC-CCCCC
Confidence 478887644443 2233446789999999999987432 122 23699
Q ss_pred EEEEcCCCC---cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~---~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+|++|||+- +..|.++....+.|+++++.|++|.+=|.|-..|.++
T Consensus 291 ~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~ 339 (451)
T COG1797 291 AVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES 339 (451)
T ss_pred EEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence 999999963 3457889999999999999999999999999988875
No 100
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.18 E-value=0.00096 Score=52.97 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=39.2
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+.|+|++|||..... ......+.+.|++.+++|++++++|.|+.++.+.
T Consensus 79 ~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 4799999999853221 1223367888999899999999999999999884
No 101
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=97.15 E-value=0.0031 Score=58.63 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.++|+|+=+. ........+.|+..|.++.++..... ...++ ..++
T Consensus 516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-----------------------------~~~~~---~~~~ 560 (717)
T TIGR01815 516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-----------------------------EAAFD---ERRP 560 (717)
T ss_pred CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-----------------------------hhhhh---hcCC
Confidence 4678888654 23466788899999998877643210 00011 1369
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
|.|||.||++.. .+....++|++..+.++||.+||.|.++|+.+
T Consensus 561 DgLILsgGPGsp---~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 561 DLVVLSPGPGRP---ADFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred CEEEEcCCCCCc---hhcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 999998887632 23345788888889999999999999999987
No 102
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.15 E-value=0.00078 Score=59.65 Aligned_cols=45 Identities=36% Similarity=0.597 Sum_probs=34.0
Q ss_pred CCccEEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.++|.||+|||... ..+ ...+.++|+++ |++|.+||.|-++|++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 37999999998421 111 24566666666 99999999999999987
No 103
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.15 E-value=0.00099 Score=47.43 Aligned_cols=45 Identities=29% Similarity=0.491 Sum_probs=34.4
Q ss_pred CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708 85 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 131 (220)
Q Consensus 85 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L 131 (220)
.++|.||+|||.... .+. ... .+.|+++.++|+++.+||.|+.+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~-~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALN-GKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHH-hhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 379999999975322 232 223 788888889999999999999774
No 104
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.10 E-value=0.0013 Score=58.56 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=40.5
Q ss_pred CCccEEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
+++|+|++|||..... +..+..+.+.|+++.++|++|.++|.|-.+|++
T Consensus 283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK 334 (475)
T ss_pred ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence 4799999999975321 234556889999999999999999999999998
No 105
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.05 E-value=0.0019 Score=51.94 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708 85 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135 (220)
Q Consensus 85 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag 135 (220)
.+.|+|+|+||.... .......+.+.|+++.++|+++++.|+|+.+++...
T Consensus 78 ~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 78 ENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred hcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 478999999997532 223455688889999999999999999999987654
No 106
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.04 E-value=0.0016 Score=55.51 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=37.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
..+|.||++||++.. .+.....++++++.++ +||.+||.|.++|+.+
T Consensus 207 ~~~DGIiLsgGPgdp--~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 207 LNPDGIVLSNGPGDP--KELQPYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred cCCCEEEEcCCCCCh--HHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 369999999998532 2345677888888877 9999999999999865
No 107
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=96.72 E-value=0.0036 Score=50.50 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=37.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
.++|.|+++||.+... ......++++..+.++|+.+||.|.++|+.
T Consensus 54 ~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~ 99 (235)
T cd01746 54 KGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVI 99 (235)
T ss_pred ccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHH
Confidence 4799999999986432 346678899999999999999999988754
No 108
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.69 E-value=0.0088 Score=51.20 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=65.6
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhC---CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
+|+|.--+|.....+...+..|+.. .+.|..++.+. +..+ .+. ..
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~---------------------------l~~~-pw~----~~ 49 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE---------------------------LLNE-PWQ----SK 49 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH---------------------------hhcC-ccc----cC
Confidence 7888888999999999999988852 45555553321 1111 111 36
Q ss_pred ccEEEEcCCCCccccc-CChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 87 YDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 87 ~D~liipGG~~~~~~~-~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
++++|+|||.+..+.. -++.-.+.||++.++|+.-.++|+|+.+-.+
T Consensus 50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 8999999997643322 2566688899999999999999999988654
No 109
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.64 E-value=0.0042 Score=46.72 Aligned_cols=49 Identities=27% Similarity=0.506 Sum_probs=38.5
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhCC-CeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g-~~i~aic~G~~~La~ 133 (220)
.+.|++|||||.+.. .+.+-..+.+-|.++..++ +++.+.|+|..+|.+
T Consensus 55 aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ 106 (226)
T KOG3210|consen 55 AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ 106 (226)
T ss_pred hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence 489999999997632 2333334888888888877 999999999998865
No 110
>PLN02347 GMP synthetase
Probab=96.57 E-value=0.012 Score=52.97 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=33.6
Q ss_pred CccEEEEcCCCCcccccCChHHH-HHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~-~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+|.||++||++..+....+.+. .+++...+.+.||.+||.|.++|+.+
T Consensus 53 ~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 53 NPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred CCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 68999999997533222233222 23333345689999999999999986
No 111
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=96.51 E-value=0.0093 Score=51.78 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=36.5
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
++|.||+.||++.. ...+...+.+++.. .++||.+||.|-++|+.+
T Consensus 281 ~pDGIiLSnGPGDP--~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~A 326 (415)
T PLN02771 281 KPDGVLFSNGPGDP--SAVPYAVETVKELL-GKVPVFGICMGHQLLGQA 326 (415)
T ss_pred CCCEEEEcCCCCCh--hHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence 69999999997632 23456777777766 478999999999999876
No 112
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.47 E-value=0.016 Score=44.75 Aligned_cols=98 Identities=21% Similarity=0.345 Sum_probs=64.9
Q ss_pred EecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEc
Q 027708 14 LCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIP 93 (220)
Q Consensus 14 l~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liip 93 (220)
|+-|+++-. ...+++.|+..|.++.++..+. + +...+....+|+|+|.
T Consensus 5 L~IDNyDSF-tyNLv~yl~~lg~~v~V~rnd~---------------------------~----~~~~~~~~~pd~iviS 52 (191)
T COG0512 5 LLIDNYDSF-TYNLVQYLRELGAEVTVVRNDD---------------------------I----SLELIEALKPDAIVIS 52 (191)
T ss_pred EEEECccch-HHHHHHHHHHcCCceEEEECCc---------------------------c----CHHHHhhcCCCEEEEc
Confidence 444554422 3566888888888877765431 0 1112223368999998
Q ss_pred CCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC---------cccCCceEecCC
Q 027708 94 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKCTAYP 146 (220)
Q Consensus 94 GG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a---------glL~g~~~T~~~ 146 (220)
-|++... +.....+.|+++ ....||.+||-|=+.++.+ .+..||.-..+.
T Consensus 53 PGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h 111 (191)
T COG0512 53 PGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITH 111 (191)
T ss_pred CCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeeeec
Confidence 8877432 455678888888 6678999999999999875 267776654433
No 113
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=96.46 E-value=0.0039 Score=50.88 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=38.2
Q ss_pred CccEEEEcCCC-Ccc--------c-----ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGR-APE--------Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~-~~~--------~-----~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+|.||++||. +.. . ..++....++++.+.++++||.+||-|.++|+.+
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva 123 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA 123 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 59999999984 321 0 0123456799999999999999999999999766
No 114
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.24 E-value=0.013 Score=52.80 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCc-ccccC
Q 027708 25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAM 103 (220)
Q Consensus 25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~-~~~~~ 103 (220)
....+.|+..|.++.+++.... .+..++++...++|.||+.||++. .+...
T Consensus 15 ~nl~~~lr~~g~~v~V~~~~~~----------------------------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~ 66 (531)
T PRK09522 15 YNLADQLRSNGHNVVIYRNHIP----------------------------AQTLIERLATMSNPVLMLSPGPGVPSEAGC 66 (531)
T ss_pred HHHHHHHHHCCCCEEEEECCCC----------------------------CccCHHHHHhcCcCEEEEcCCCCChhhCCC
Confidence 4467888888988888764310 011222222235889999999863 22222
Q ss_pred ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 104 NDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 104 ~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+ ++.+....++||.+||.|.++|+.+
T Consensus 67 ~~----~i~~~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 67 MP----ELLTRLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred CH----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence 22 3333345689999999999999876
No 115
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.23 E-value=0.013 Score=52.99 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=34.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+|.||+.||++... ++....++++.+ ..++||.+||-|.++|+.+
T Consensus 44 ~~d~vIlsgGP~~p~--~~~~~~~li~~~-~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 44 NPSHIVISPGPGRPE--EAGISVEVIRHF-SGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred CCCEEEECCCCCChh--hCCccHHHHHHh-hcCCCEEEEcHHHHHHHHH
Confidence 689999999986321 223345667664 6789999999999999876
No 116
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.21 E-value=0.029 Score=50.47 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=54.4
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
.+|+||=| |.. -.......++..|....++..+.. ...+.+ .++|
T Consensus 4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~-----------------------------~~~l~~---~~~d 48 (511)
T PRK00074 4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS-----------------------------AEEIRA---FNPK 48 (511)
T ss_pred CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC-----------------------------HHHHhc---cCCC
Confidence 46887777 333 234456788888876666532210 011222 2579
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||++||+...+-...+.+ .+...+.++||.+||.|.++|+.+
T Consensus 49 gIIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 49 GIILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred EEEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence 9999999753221122333 244556799999999999999875
No 117
>PRK05380 pyrG CTP synthetase; Validated
Probab=95.91 E-value=0.014 Score=52.08 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=37.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
..+|.|++|||++... .+..+.+++.+.++++|+.+||.|.++++-
T Consensus 342 ~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v 387 (533)
T PRK05380 342 KGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI 387 (533)
T ss_pred hcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence 4799999999987532 335678889889999999999999987753
No 118
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=95.88 E-value=0.018 Score=46.13 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=39.2
Q ss_pred CCccEEEEcCCCCc--c-------------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAP--E-------------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~--~-------------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
+..|.|+++||.+. . +..+|.-.+.+|+++.++++||.+||-|..+|--
T Consensus 59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNV 122 (243)
T COG2071 59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNV 122 (243)
T ss_pred hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence 46899999999432 1 1235667889999999999999999999998853
No 119
>PRK06186 hypothetical protein; Validated
Probab=95.77 E-value=0.018 Score=46.10 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~ 130 (220)
..++|.|+||||.+.+ .-+--+..++.+..+++|+.+||-|.++
T Consensus 51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 3479999999998843 3456677789999999999999999984
No 120
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=95.74 E-value=0.033 Score=44.04 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=37.5
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+.|+|+++||..... ......+.+.|++.+++|+++++.|+|+.++.+.
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 4799999999975432 1233345666666667999999999999999984
No 121
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.18 E-value=0.028 Score=46.44 Aligned_cols=49 Identities=20% Similarity=0.444 Sum_probs=32.8
Q ss_pred CCccEEEEcCCC-Ccc---cccCChHHHHHHHHHHhCC--CeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGR-APE---YLAMNDSVIDLVRKFSNSG--KTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~-~~~---~~~~~~~l~~~l~~~~~~g--~~i~aic~G~~~La~ 133 (220)
..+|.|++|||. ... .......+.++..+..++| .||.++|.|..+|+.
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~ 107 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTY 107 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHH
Confidence 478999999985 322 1122234445555555555 799999999998876
No 122
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=95.17 E-value=0.059 Score=45.58 Aligned_cols=55 Identities=27% Similarity=0.415 Sum_probs=44.0
Q ss_pred CcCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 78 TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 78 ~l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+.+++-.-++|.||+.-|+|.. ..-+..++.++++....+|+.+||-|=++|+.|
T Consensus 212 ~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA 266 (368)
T COG0505 212 SAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA 266 (368)
T ss_pred CHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence 3444333479999999998743 346688899999999999999999999999876
No 123
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.99 E-value=0.023 Score=44.72 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCccEEEEcCCCCccc--ccCC-hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY--LAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~-~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
..+|++++.||.+-.. ..++ ..-.+-|++....|+|+.+||.|..+|...
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 4799999988765221 1233 455577889999999999999999999863
No 124
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=94.98 E-value=0.077 Score=46.85 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=34.7
Q ss_pred CccEEEEcCCCCcc-cc--cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPE-YL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~-~~--~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+.|++++||-.+.. ++ .+..-+-.-|+++.+++.+|.+||.|-++|.+.
T Consensus 290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence 59999999976532 11 122233345666777799999999999999864
No 125
>PLN02327 CTP synthase
Probab=94.80 E-value=0.058 Score=48.51 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=35.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La 132 (220)
..++|.|++|||.+... ....+..++.+..+++|+.+||.|.++++
T Consensus 360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~v 405 (557)
T PLN02327 360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAV 405 (557)
T ss_pred hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 35899999999986432 22345667777789999999999998775
No 126
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=94.72 E-value=0.057 Score=48.34 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La 132 (220)
.++|.|++|||++... ....+..++.+.+++.|+.+||.|.++++
T Consensus 342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~ 386 (525)
T TIGR00337 342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAV 386 (525)
T ss_pred cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 4699999999987532 33445677777789999999999998774
No 127
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=94.62 E-value=0.055 Score=30.51 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=20.6
Q ss_pred CeEEEEecC-----------CCCchhhHHHHHHHHhCC
Q 027708 9 RSVLLLCGD-----------YMEDYEAMVPFQALLAFG 35 (220)
Q Consensus 9 ~kI~il~~~-----------g~~~~e~~~~~~~l~~ag 35 (220)
|||+|++.. |+...|++.|+++|.++|
T Consensus 1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG 38 (38)
T PF13587_consen 1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG 38 (38)
T ss_dssp SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence 488888853 788899999999999886
No 128
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.45 Score=37.26 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=38.6
Q ss_pred CCCccEEEEcCCCCcccccCC---hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 84 PTKYDGLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~---~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+.||.++|.|..... ..+. ..|..++++.....+.|.+||-|-.++|++
T Consensus 57 l~ky~gfvIsGS~~dA-f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 57 LEKYDGFVISGSKHDA-FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred hhhhceEEEeCCcccc-cccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 3479999999875422 2222 367788888888889999999999999987
No 129
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=94.42 E-value=0.084 Score=44.13 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=36.6
Q ss_pred CcCCCCCCCccEEEEcCCCCc-ccccC------ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 78 TFDEIDPTKYDGLVIPGGRAP-EYLAM------NDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 78 ~l~~~~~~~~D~liipGG~~~-~~~~~------~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+++++....||++||.|.+-. ....+ -.++++|++ ++++++.+||-|+.+++.+
T Consensus 91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~a 151 (302)
T PRK05368 91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYH 151 (302)
T ss_pred CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHH
Confidence 455555568999999998632 11111 234555555 4589999999999988754
No 130
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=94.02 E-value=0.18 Score=41.03 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=39.7
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
.+.|+|++.||..... ......+.+.|++.+++|.++++..+|+.++..
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 3789999999975332 245667888999999999999999999987753
No 131
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=93.45 E-value=0.054 Score=43.14 Aligned_cols=49 Identities=31% Similarity=0.555 Sum_probs=30.2
Q ss_pred CCccEEEEcCCC-Cc--ccc-------------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGR-AP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~-~~--~~~-------------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
+..|.|++|||. +. ... .++.--..+++.+.++++||.+||-|..+|.-
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv 121 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV 121 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence 368999999998 43 111 12233456777778899999999999998843
No 132
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=93.35 E-value=0.14 Score=48.18 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=33.5
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhC----CCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~----g~~i~aic~G~~~La~a 134 (220)
..||.|||.||++... ++.-..++++..+. .+||.+||.|.++|+.+
T Consensus 52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 3799999999887432 22334445554443 59999999999999876
No 133
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.11 E-value=0.027 Score=42.26 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=37.2
Q ss_pred CccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+.|+|++.||..... ...+..+.+.|++.+++|+++++..+|+.++...
T Consensus 35 ~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~ 85 (154)
T PF03575_consen 35 EADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMILGPS 85 (154)
T ss_dssp HSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred hCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence 799999999965332 2345678999999999999999999999887554
No 134
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=93.01 E-value=0.37 Score=46.19 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=32.9
Q ss_pred CccEEEEcCCCCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.||.|||.+|++... ..+-....++|.++ .+.||.+||.|-++|+.+
T Consensus 131 ~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 131 AFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred CCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 689999999987322 11112235555543 479999999999999875
No 135
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=92.75 E-value=0.55 Score=44.44 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=69.3
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+||-.+|.+ .-......|.++||+..-++.+- . +. .....++|-
T Consensus 1059 PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmtD------------------l--------L~-----G~~~ld~fr 1105 (1320)
T KOG1907|consen 1059 PKVAILREEGVN--GDREMAAAFYAAGFETVDVTMTD------------------L--------LA-----GRHHLDDFR 1105 (1320)
T ss_pred CceEEeeccccc--cHHHHHHHHHHcCCceeeeeeeh------------------h--------hc-----CceeHhHhc
Confidence 599999999988 34444558889999754443321 0 00 112234788
Q ss_pred EEEEcCCCC-cc----------cccCChHHHHHHHHHHh-CCCeEEEEehHHHHHHhCcccCCceEecCCC
Q 027708 89 GLVIPGGRA-PE----------YLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRKCTAYPP 147 (220)
Q Consensus 89 ~liipGG~~-~~----------~~~~~~~l~~~l~~~~~-~g~~i~aic~G~~~La~aglL~g~~~T~~~~ 147 (220)
.|+.|||.+ ++ .+..++.+..-..+|++ +...-.+||+|..++++.|.+- -.+-.+|.
T Consensus 1106 Glaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~-p~~~~~p~ 1175 (1320)
T KOG1907|consen 1106 GLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG-PEVGKWPD 1175 (1320)
T ss_pred ceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC-ccccCCCc
Confidence 899999864 11 23467777777777775 4667889999999999998654 24444443
No 136
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=92.58 E-value=0.27 Score=46.71 Aligned_cols=47 Identities=30% Similarity=0.524 Sum_probs=39.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
+||.||+..|++... .-+.+.+-+++....++||.+||.|-++||.+
T Consensus 210 ~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 210 EYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred ccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 899999999987432 35677788888888889999999999999976
No 137
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=92.04 E-value=0.19 Score=39.99 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=40.6
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
.+.|+|++.||..... ......+.+.|++.+++|.++++..+|+.++...
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 4789999999965432 2355678899999999999999999999998654
No 138
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=91.93 E-value=0.38 Score=42.52 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=34.4
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 131 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L 131 (220)
+|.++||||.+.+ .-+--+..++-+..++.|..+||.|.++.
T Consensus 344 ~dgIlVPGGFG~R---G~eGkI~Ai~yAREn~iP~lGIClGmQ~a 385 (533)
T COG0504 344 VDGILVPGGFGYR---GVEGKIAAIRYARENNIPFLGICLGMQLA 385 (533)
T ss_pred CCEEEeCCCCCcC---chHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence 8999999999854 34455667777788899999999999764
No 139
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=90.95 E-value=0.21 Score=38.42 Aligned_cols=54 Identities=20% Similarity=0.427 Sum_probs=35.5
Q ss_pred CcCCCCCCCccEEEEcCCCCcccccCC-----hHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708 78 TFDEIDPTKYDGLVIPGGRAPEYLAMN-----DSVIDLVRKFSNSGKTIASICHGQLILA 132 (220)
Q Consensus 78 ~l~~~~~~~~D~liipGG~~~~~~~~~-----~~l~~~l~~~~~~g~~i~aic~G~~~La 132 (220)
++++.....||.+||.|.+-- .+... +++.+.+....+++.++..+|-|+.+..
T Consensus 54 ~~~~i~~~~yDGlIITGApve-~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal 112 (175)
T cd03131 54 TFDDIRDAKFDGLIVTGAPVE-HLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAAL 112 (175)
T ss_pred CHHHccccCCCEEEEeCCCcc-cCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 455565678999999997531 11111 2444444444477899999999998754
No 140
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=90.89 E-value=0.16 Score=40.41 Aligned_cols=55 Identities=44% Similarity=0.773 Sum_probs=35.7
Q ss_pred EcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCC
Q 027708 41 ACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR 96 (220)
Q Consensus 41 ~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~ 96 (220)
+.+..+..+.+....+...+.+ .+..+-|.++....+|+++....||.|++|||.
T Consensus 193 v~~~~~~~e~~a~~~~~~~~~~-v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 193 VAPEKKAGEACATADHDLEGRQ-VPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred cCCCchhcceecceehhhhcCc-ceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence 4444443444444444444332 555566777777777999988899999999984
No 141
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=89.61 E-value=7.4 Score=31.82 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEE-EEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecC
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA-SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP 162 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~-aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~ 162 (220)
++++|+|||+|-..+ -.+.-...|.++..+|..+. .+.....-+ .+...... ...+...+.|.++|..+.+.
T Consensus 195 P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~--~~~~~~~~-~~~~~L~~lL~~~Gi~~~~~ 267 (271)
T PF09822_consen 195 PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVEL--QGLWAGGA-QRDSNLNDLLEEYGIRINPG 267 (271)
T ss_pred CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCccccc--cccccccc-ccccCHHHHHHHcCCEeCCC
Confidence 468999999874332 35667777777887766544 333321111 11111111 11566777888887766654
No 142
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=2.9 Score=33.18 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=60.3
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCC---CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
+|.|.--+|.+...+-.....|+..- +.|..+..+ +-.+..|.+ .
T Consensus 2 ~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~----------------------------~Li~EpW~~----~ 49 (253)
T COG4285 2 NVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ----------------------------FLIKEPWEE----T 49 (253)
T ss_pred ceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh----------------------------eeecCcchh----c
Confidence 68888888999999999998888642 233333211 111112443 3
Q ss_pred ccEEEEcCCCCcccc-cCChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708 87 YDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLI 130 (220)
Q Consensus 87 ~D~liipGG~~~~~~-~~~~~l~~~l~~~~~~g~~i~aic~G~~~ 130 (220)
--+|++|||.+..+. .-++..-+.|..+.++|....+||+|...
T Consensus 50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 568999999775432 23455667788888899999999999865
No 143
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.16 E-value=4.1 Score=34.21 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=53.0
Q ss_pred CCeEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708 8 KRSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT 85 (220)
Q Consensus 8 ~~kI~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~ 85 (220)
.+||+++.-++-.. ..+....+.|...|+++.+....... .+... +......
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~---------------------~~~~~-----~~~~~~~ 56 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD---------------------NPYPV-----FLASASE 56 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh---------------------ccccc-----hhhcccc
Confidence 36899998876433 23455667788889887665432110 00000 0011123
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh-HH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~-G~ 128 (220)
.+|++++.||.| .++..++.+...+.|+++|-. |.
T Consensus 57 ~~d~vi~~GGDG--------T~l~~~~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 57 LIDLAIVLGGDG--------TVLAAARHLAPHDIPILSVNVGGH 92 (305)
T ss_pred CcCEEEEECCcH--------HHHHHHHHhccCCCCEEEEecCCc
Confidence 699999999855 445666666677899999987 55
No 144
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=88.97 E-value=2 Score=32.43 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=34.4
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHh--CCCeEEEEehHHH
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 129 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~g~~i~aic~G~~ 129 (220)
+..+||++||.. ...+...++.+.+|++++.. ..+|.+.+|.+..
T Consensus 44 ~l~~ydavVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~ 90 (175)
T COG4635 44 ALEDYDAVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT 90 (175)
T ss_pred ChhhCceEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence 456899999954 23334568899999999887 5899999997764
No 145
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=88.70 E-value=0.51 Score=37.28 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708 85 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135 (220)
Q Consensus 85 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag 135 (220)
.+-|+|+|.||..-. .......+.+.|++..++|++.++..+|+.+-...+
T Consensus 83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 368999998886532 123456788999999999999999999997765543
No 146
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.19 E-value=6.5 Score=32.89 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCCCCCCCCeEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcC
Q 027708 1 MANSKGGKRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNAT 78 (220)
Q Consensus 1 ~~~~~~~~~kI~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~ 78 (220)
|++|+ +|+|+.-++-.. .+ +....+.|...|.++.+...... ...........
T Consensus 1 ~~~~~----~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~------------------~~~~~~~~~~~--- 55 (295)
T PRK01231 1 MPSFR----NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE------------------VLPGHGLQTVS--- 55 (295)
T ss_pred CCCCC----EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh------------------hcCcccccccc---
Confidence 55653 799998765532 22 33555667788888766432111 00000000000
Q ss_pred cCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 79 FDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 79 l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
..+. ...+|.+++.||.| .++..++.+...+.||.+|-.|-.
T Consensus 56 ~~~~-~~~~d~vi~~GGDG--------t~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 56 RKLL-GEVCDLVIVVGGDG--------SLLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred hhhc-ccCCCEEEEEeCcH--------HHHHHHHHhcCCCCCEEEEeCCcc
Confidence 1111 13689999999855 334445656567888998888763
No 147
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=85.79 E-value=1.6 Score=38.31 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=33.0
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 131 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L 131 (220)
..|.|+||||.+.+- -+--+..++.+.+++.|..+||.|-++-
T Consensus 363 ~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~A 405 (585)
T KOG2387|consen 363 SADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLA 405 (585)
T ss_pred cCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHH
Confidence 689999999998653 3344455566667899999999998764
No 148
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=84.59 E-value=9.5 Score=29.20 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHh--CCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~g~~i~aic~G 127 (220)
.+||.||+.++.... .-.+.+.+|+++... ++|+++..|.|
T Consensus 45 ~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 45 SDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 479998886643322 235788888877543 68999999977
No 149
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=84.39 E-value=10 Score=31.63 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708 8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT 85 (220)
Q Consensus 8 ~~kI~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~ 85 (220)
.++|+|+.-.+-.. .+ +......|+..|+++.+....... . ....... ....+. ..
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~-----------------~-~~~~~~~---~~~~~~-~~ 62 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARN-----------------I-GLTGYPA---LTPEEI-GA 62 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh-----------------c-Ccccccc---cChhHh-cc
Confidence 46899998765532 22 445555677788876554221110 0 0000000 011121 13
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+|++|+.||.| .+++.++.+...+.|+.+|-.|.
T Consensus 63 ~~d~vi~~GGDG--------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 63 RADLAVVLGGDG--------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 689999999855 44455666656678888887776
No 150
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=82.71 E-value=5.7 Score=31.19 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccc
Q 027708 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 101 (220)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~ 101 (220)
.++...+..|...|..+++++++. +...|.+||+|+-.
T Consensus 30 ~~~~~~y~al~~~gi~vDvv~~~~-------------------------------------dL~~Ykllv~P~~~----- 67 (207)
T PF08532_consen 30 DQVRGWYRALRELGIPVDVVSPDD-------------------------------------DLSGYKLLVLPSLY----- 67 (207)
T ss_dssp HHHHHHHHHHHTTT--EEEE-TTS---------------------------------------TT-SEEEES--S-----
T ss_pred HHHHHHHHHHHHcCCceEEecCcC-------------------------------------CcccCcEEEEeeEE-----
Confidence 456778889999999999987631 12369999999732
Q ss_pred cCChHHHHHHHHHHhCCCeEEE
Q 027708 102 AMNDSVIDLVRKFSNSGKTIAS 123 (220)
Q Consensus 102 ~~~~~l~~~l~~~~~~g~~i~a 123 (220)
.-++++.+.|+++.++|..+..
T Consensus 68 ~l~~~~~~~L~~yV~~GG~li~ 89 (207)
T PF08532_consen 68 ILSPEFAERLRAYVENGGTLIL 89 (207)
T ss_dssp C--HHH---HHHHHT-SS-EEE
T ss_pred EEChHHHHHHHHHHHCCCEEEE
Confidence 3578899999999998766553
No 151
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=82.22 E-value=2.2 Score=36.14 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=37.4
Q ss_pred CccEEEEcCCC--Cc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 86 KYDGLVIPGGR--AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 86 ~~D~liipGG~--~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
..|-||+||-. ++ .+.....-+.+-|++....|||+.+||.|-..|-.
T Consensus 39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD 89 (541)
T ss_pred cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence 57889999832 22 22345677889999999999999999999998854
No 152
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=81.90 E-value=13 Score=27.49 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccc
Q 027708 22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 101 (220)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~ 101 (220)
.++...+..|...|..+++++++. + ..+|++||+|.-..
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~-----------------------------------~--l~~y~~vi~P~~~~---- 64 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDA-----------------------------------D--LSGYKLVVLPDLYL---- 64 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-----------------------------------C--cccCCEEEECchhc----
Confidence 567788888888898888876421 1 12799999997532
Q ss_pred cCChHHHHHHHHHHhCCCeEEEEe
Q 027708 102 AMNDSVIDLVRKFSNSGKTIASIC 125 (220)
Q Consensus 102 ~~~~~l~~~l~~~~~~g~~i~aic 125 (220)
..+...+.|+++.++|..+.+-+
T Consensus 65 -~~~~~~~~l~~~v~~GG~li~~~ 87 (154)
T cd03143 65 -LSDATAAALRAYVENGGTLVAGP 87 (154)
T ss_pred -CCHHHHHHHHHHHHCCCEEEEec
Confidence 35688899999999888666533
No 153
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.35 E-value=25 Score=29.38 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCC-chhh-HHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708 8 KRSVLLLCGDYME-DYEA-MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT 85 (220)
Q Consensus 8 ~~kI~il~~~g~~-~~e~-~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~ 85 (220)
+++|+|+.-.+-. ..++ ....+.|.+.|.++.+...... .. +........+.+. ..
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-----------------~~----~~~~~~~~~~~~~-~~ 62 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-----------------EL----QLKNVKTGTLAEI-GQ 62 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-----------------hc----Ccccccccchhhc-CC
Confidence 4789999765443 2223 3455668788887765432110 00 0000000011222 23
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+.|.+++.||.| .++..++.+...+.||.+|-.|.
T Consensus 63 ~~d~vi~lGGDG--------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 63 QADLAIVVGGDG--------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCeEEEEECCC
Confidence 689999999855 44455566666678999998887
No 154
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=80.15 E-value=7 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (220)
|||+| +..+....+.|+..||+|.-+.
T Consensus 2 kkIAV-------E~~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 2 KKIAV-------EEGLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CeEEe-------cCCchHHHHHHHHCCCEEEecC
Confidence 56765 4467788999999999875543
No 155
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.85 E-value=28 Score=29.14 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCeEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccc--cccCcccccCcCcCCCC
Q 027708 8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS--ETRGHNFALNATFDEID 83 (220)
Q Consensus 8 ~~kI~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~i~~~~~l~~~~ 83 (220)
++||+|+.-++-.. .+ +....+.|...|.++.+-...... + ... ...+.... ...+.
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~-~--------------~~~~~~~~~~~~~---~~~~~- 65 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKE-G--------------CIYTQDTVGCHIV---NKTEL- 65 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccc-c--------------chhcccccccccc---chhhc-
Confidence 47899998765432 22 334556688888887664211100 0 000 00011110 11222
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
....|.+|+.||.| .++...+.+...+.||.+|-.|.
T Consensus 66 ~~~~D~vi~lGGDG--------T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 66 GQYCDLVAVLGGDG--------TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred CcCCCEEEEECCcH--------HHHHHHHHhcccCCCEEEEecCC
Confidence 12589999999855 44455566666788999998876
No 156
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.04 E-value=21 Score=29.58 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=49.3
Q ss_pred eEEEEecCCCC-c-hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 10 SVLLLCGDYME-D-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 10 kI~il~~~g~~-~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
||+|+.-.+-. . ..+......|+..|.++.+....... . +. .. .....+....++
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~-----------------~----~~-~~-~~~~~~~~~~~~ 58 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEH-----------------L----PE-FS-EEDVLPLEEMDV 58 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh-----------------c----Cc-cc-ccccccccccCC
Confidence 79999776543 2 23445666788889888775321100 0 00 00 000111112368
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
|.+|+.||.| .+++.++ ....+.||.+|-.|.
T Consensus 59 d~vi~iGGDG--------TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 59 DFIIAIGGDG--------TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred CEEEEEeCcH--------HHHHHHH-hcCCCCeEEEEeCCC
Confidence 9999999855 3334455 555688888888776
No 157
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=78.54 E-value=14 Score=28.11 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=43.2
Q ss_pred CCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC----------cccCCceEecCCCC
Q 027708 80 DEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----------DVVKGRKCTAYPPV 148 (220)
Q Consensus 80 ~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a----------glL~g~~~T~~~~~ 148 (220)
+++....++.|+|..|++... +..--.+.++++. -..|+.++|-|-..+.++ +++.||.--.|...
T Consensus 57 ~El~~~NP~~LliSPGPG~P~--DsGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~ 132 (223)
T KOG0026|consen 57 EELKRKNPRGLLISPGPGTPQ--DSGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE 132 (223)
T ss_pred HHHhhcCCCeEEecCCCCCCc--cccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence 344344678888877766322 4444556666654 467899999999877654 47778776666654
No 158
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.32 E-value=23 Score=29.81 Aligned_cols=36 Identities=8% Similarity=0.251 Sum_probs=27.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
+.|++|+.||.| .++...+.+...+.||.+|-.|..
T Consensus 72 ~~D~vi~lGGDG--------T~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 72 GCELVLVLGGDG--------TILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred CCCEEEEEcCCH--------HHHHHHHHhccCCCcEEEEecCCC
Confidence 589999999855 455666666677889999988763
No 159
>PRK06455 riboflavin synthase; Provisional
Probab=75.99 E-value=7.6 Score=29.15 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=51.2
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhC--CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
+||+|+...-...-=+.+..+.|++. +.++.++...+ +.-+.+....-+. ...
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPG----------------------a~ELP~aakkL~~---~~~ 56 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPG----------------------IKDLPVAAKKLIE---EEG 56 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCC----------------------HHHHHHHHHHHHh---cCC
Confidence 69999997644433468889999984 45555554432 1112222222222 246
Q ss_pred ccEEEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEE
Q 027708 87 YDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASI 124 (220)
Q Consensus 87 ~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~ai 124 (220)
||++|.-|..+.. .+..+.....+.+-....++||.-+
T Consensus 57 yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 57 CDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred CCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEEEE
Confidence 9999998865321 1223344445555555667777643
No 160
>PRK03094 hypothetical protein; Provisional
Probab=75.29 E-value=12 Score=24.73 Aligned_cols=21 Identities=24% Similarity=0.009 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHhCCCeEEEE
Q 027708 21 DYEAMVPFQALLAFGVSVDAA 41 (220)
Q Consensus 21 ~~e~~~~~~~l~~ag~~v~~~ 41 (220)
+..+....+.|+..||+|.-+
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l 27 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQL 27 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEec
Confidence 456788899999999988655
No 161
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=73.31 E-value=9.7 Score=31.12 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=54.2
Q ss_pred CeEEEEec------CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCC
Q 027708 9 RSVLLLCG------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI 82 (220)
Q Consensus 9 ~kI~il~~------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~ 82 (220)
++++||.. -........-+.+.|...|+.+.....=++..+ . |. ..+..+
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~--------------~--------I~--~~l~~a 57 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPD--------------R--------IV--EALREA 57 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHH--------------H--------HH--HHHHHH
Confidence 46666653 345567888899999999998876655433110 0 00 011121
Q ss_pred CCCCccEEEEcCCCCcc--c-------------ccCChHHHHHHHHHHhC
Q 027708 83 DPTKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNS 117 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~--~-------------~~~~~~l~~~l~~~~~~ 117 (220)
...+|+||+.||.||- + +..|+..+++|++++.+
T Consensus 58 -~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~ 106 (255)
T COG1058 58 -SERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEALAMIEEKYAK 106 (255)
T ss_pred -HhCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHh
Confidence 2359999999998752 1 34678999999998874
No 162
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.45 E-value=9.6 Score=33.64 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=31.4
Q ss_pred ccEEEEcCCC-Ccccc--cCChHHHHHHHHHHhCCCe-EEEEehHHH-HHHhCcccCCceEecCCC
Q 027708 87 YDGLVIPGGR-APEYL--AMNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYPP 147 (220)
Q Consensus 87 ~D~liipGG~-~~~~~--~~~~~l~~~l~~~~~~g~~-i~aic~G~~-~La~aglL~g~~~T~~~~ 147 (220)
+|+|||.=|. +..+| .+++.+.+.|.++ ..| |.||+|=.- .| +.+...+++.|...
T Consensus 193 ~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~---~~Pvis~IGHE~D~tl--~D~vAd~ra~TPta 253 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWAFNDEAVARAIAAS---RIPVISAVGHETDFTI--ADFVADLRAPTPTA 253 (438)
T ss_pred CCEEEEecCCCCHHHhhccCcHHHHHHHHcC---CCCEEEeccCCCCccH--HHHhhhccCCChHH
Confidence 8999998443 33443 3566666555544 555 566766541 11 24555666666544
No 163
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=70.20 E-value=5.4 Score=32.36 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708 85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 133 (220)
Q Consensus 85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ 133 (220)
...+.||+.||..... ...|-++.+.|++.++.|..|++...|+.++..
T Consensus 105 ~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 105 ENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 4789999999976543 457899999999999999999999999988753
No 164
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.14 E-value=55 Score=27.53 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=28.1
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
+.|++|+.||.| .++...+.+...+.||.+|-.|..
T Consensus 68 ~~Dlvi~iGGDG--------TlL~aar~~~~~~iPilGIN~G~l 103 (305)
T PRK02649 68 SMKFAIVLGGDG--------TVLSAARQLAPCGIPLLTINTGHL 103 (305)
T ss_pred CcCEEEEEeCcH--------HHHHHHHHhcCCCCcEEEEeCCCC
Confidence 589999999855 455666777777899999988764
No 165
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=68.97 E-value=2 Score=32.30 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
+..+||.||| |.+-... .-.+.+..||++..-+||.|+-.|+
T Consensus 70 d~~~YD~I~l-G~PvW~~-~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFL-GTPVWWG-TPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEE-EEEEETT-EE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEE-echHHcC-CCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 3468999999 4443221 2356889999988778999998886
No 166
>PRK05568 flavodoxin; Provisional
Probab=66.89 E-value=45 Score=23.99 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=24.8
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHH--hCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~--~~g~~i~aic~ 126 (220)
.++|.|++..............+..++.+.. .++|.++.+|+
T Consensus 47 ~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 47 KGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred HhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 4799999965422111111235666666553 26888888887
No 167
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.87 E-value=60 Score=27.09 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=27.7
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
++|.+|+.||.| .++...+.+...+.||.+|-.|..
T Consensus 64 ~~dlvi~lGGDG--------T~L~aa~~~~~~~~PilGIN~G~l 99 (292)
T PRK01911 64 SADMVISIGGDG--------TFLRTATYVGNSNIPILGINTGRL 99 (292)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEecCCC
Confidence 689999999855 445566666667889999988873
No 168
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=66.85 E-value=42 Score=26.01 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=61.6
Q ss_pred CeEEEEecCCCC--chhhHHHHHHHHh-CCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccc---cCcCcCCC
Q 027708 9 RSVLLLCGDYME--DYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFA---LNATFDEI 82 (220)
Q Consensus 9 ~kI~il~~~g~~--~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~---~~~~l~~~ 82 (220)
+||+|+-+...- ..=+-...+.+.. .|.++++......... .+....+.... +...++++
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l 67 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPE--------------EVAKKAGGKTDQAAPVATPDEL 67 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCH--------------HHHHhcCCCcccCCCccCHHHH
Confidence 478888876432 2223334555665 7888877765321000 11111111000 01113333
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHh-------CCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHC
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-------SGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA 155 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~-------~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~ 155 (220)
.++|.|++....... .-.+.+..|+.+... .+|+++.++++. -..|-...+.......+...
T Consensus 68 --~~aD~ii~gsPty~g--~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g-------~~~Gg~~~~l~~l~~~~~~~ 136 (200)
T PRK03767 68 --ADYDAIIFGTPTRFG--NMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTG-------TQHGGQETTITSTHTTLLHH 136 (200)
T ss_pred --HhCCEEEEEecccCC--CchHHHHHHHHHhccccccCCccCCEEEEEEeCC-------CCCCChHHHHHHHHHHHHHc
Confidence 479999885432211 234566677766532 367777777542 22222222222333444456
Q ss_pred CCeEecCC
Q 027708 156 GASWIEPE 163 (220)
Q Consensus 156 g~~~~~~~ 163 (220)
|..++...
T Consensus 137 gm~vv~~~ 144 (200)
T PRK03767 137 GMVIVGLP 144 (200)
T ss_pred CCEEeCCC
Confidence 66666653
No 169
>PRK09271 flavodoxin; Provisional
Probab=65.21 E-value=55 Score=24.38 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=24.4
Q ss_pred CCccEEEEcCC-CCcccccC-ChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGG-RAPEYLAM-NDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG-~~~~~~~~-~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.++|+|+|... .+...++. -..+.++|.....++|.++.+++|
T Consensus 50 ~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 50 EDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred ccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 47899999652 12111111 234445555544478888888876
No 170
>PRK06756 flavodoxin; Provisional
Probab=65.09 E-value=51 Score=24.00 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=47.0
Q ss_pred CeEEEEecCCCCchhh--HHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 9 RSVLLLCGDYMEDYEA--MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~--~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
+||.|+-+...--++- -.+.+.|+..|..+++...... + ...+ ..+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~-----------------~-------------~~~~--~~~ 49 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDS-----------------P-------------EASI--LEQ 49 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhcc-----------------C-------------CHHH--Hhc
Confidence 4788877654433333 3345667777777666543210 0 0122 247
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHH---HhCCCeEEEEehHH
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKF---SNSGKTIASICHGQ 128 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~---~~~g~~i~aic~G~ 128 (220)
+|+|++........ ...+...+|+.+. .-++++++.+++|.
T Consensus 50 ~d~vi~gspt~~~g-~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~ 93 (148)
T PRK06756 50 YDGIILGAYTWGDG-DLPDDFLDFYDAMDSIDLTGKKAAVFGSCD 93 (148)
T ss_pred CCeEEEEeCCCCCC-CCcHHHHHHHHHHhcCCCCCCEEEEEeCCC
Confidence 99998854221111 1123466776654 33689999888754
No 171
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=64.68 E-value=15 Score=33.29 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhC--CCeEEEEehHHHHHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS--GKTIASICHGQLILA 132 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~--g~~i~aic~G~~~La 132 (220)
.-||+|+|..|+|.. ..++-+..+.+.... ..||.+||.|-..|+
T Consensus 63 ~~FDaIVVgPGPG~P---~~a~d~gI~~rl~~~~~~iPilGICLGfQal~ 109 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSP---MCAADIGICLRLLLECRDIPILGICLGFQALG 109 (767)
T ss_pred cccceEEecCCCCCC---CcHHHHHHHHHHHHhcCCCceeeeehhhHhHh
Confidence 359999997777632 234444444444443 599999999987764
No 172
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.48 E-value=66 Score=26.80 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=51.5
Q ss_pred CCeEEEEecCCCCchhhH-HHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 8 KRSVLLLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
++||+|+.-++-...++. ...+.|.+.|.++.+...... .. ...+. ...+. ..+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~-----------------~~-~~~~~------~~~~~-~~~ 64 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAE-----------------IL-DLPGY------GLDEL-FKI 64 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhh-----------------hh-ccccc------chhhc-ccC
Confidence 368999987653333333 344557677877655422111 00 00111 11222 136
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+|.+|+.||.| .++...+.+...+.||.+|-.|.
T Consensus 65 ~Dlvi~iGGDG--------T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 65 SDFLISLGGDG--------TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred CCEEEEECCCH--------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 89999999855 45566677777789999998887
No 173
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=61.89 E-value=36 Score=28.42 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=26.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
..+|+|||+-= . .....+.+.++.....+..|..+.+|.
T Consensus 71 ~~~D~vilavK----~-~~~~~~~~~l~~~~~~~~~iv~lqNG~ 109 (313)
T PRK06249 71 PPCDWVLVGLK----T-TANALLAPLIPQVAAPDAKVLLLQNGL 109 (313)
T ss_pred CCCCEEEEEec----C-CChHhHHHHHhhhcCCCCEEEEecCCC
Confidence 47999999641 1 123456677777766667787787775
No 174
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=60.17 E-value=25 Score=26.11 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
..||.++=.+|+...=.-......|..+.+..++ |..+. . .......++-|+++ +++....+.
T Consensus 19 ~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~Fi-P~~d~--------e---~a~~l~~~~~Gmq~-----~~~~~~~~~ 81 (147)
T PF09897_consen 19 GEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFI-PDADL--------E---KARKLEVTDIGMQV-----LGEKKDPHP 81 (147)
T ss_dssp -SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEE-ETT-G--------G---G-EEEEEETTEEE------EEEE--S-E
T ss_pred CCeEEEeCCCcccccHHHHHHHHHhhhccceeec-CCCCh--------h---hhheeeccCccccc-----ccccCCCCC
Confidence 4689888889988433333333344443344444 22110 0 00002233445543 222222349
Q ss_pred cEEEEcCCCCcccccCC-hHHHHHHHHHHhCCCeEEEEehHHHHHHhCcc
Q 027708 88 DGLVIPGGRAPEYLAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAADV 136 (220)
Q Consensus 88 D~liipGG~~~~~~~~~-~~l~~~l~~~~~~g~~i~aic~G~~~La~agl 136 (220)
|+|++-||.......-+ +.+.+.+.+...+. |.++|-=. ++.++|.
T Consensus 82 D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms-~F~kagW 128 (147)
T PF09897_consen 82 DVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICFMS-MFEKAGW 128 (147)
T ss_dssp EEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETT-HHHHTTH
T ss_pred CEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHH-HHHHcCC
Confidence 99999999875443333 45667777665433 99999644 3355553
No 175
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=59.11 E-value=28 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+-|.+|+.+-.+ .++.+.++++.+.++|.++.+++...
T Consensus 46 ~~~d~vi~iS~sG-----~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSG-----ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3568888887544 57899999999999999999999754
No 176
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=58.76 E-value=8 Score=34.14 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCCCCCCccEEEEcCCCCccc----ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708 80 DEIDPTKYDGLVIPGGRAPEY----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134 (220)
Q Consensus 80 ~~~~~~~~D~liipGG~~~~~----~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a 134 (220)
..+....|-.|||.||+..-+ -.-++.+. .-|.+|.+||.|.+++...
T Consensus 53 ~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if-------~~~vpvLGICYGmQ~i~~~ 104 (552)
T KOG1622|consen 53 KTITEYGPRGIIISGGPNSVYAEDAPSFDPAIF-------ELGVPVLGICYGMQLINKL 104 (552)
T ss_pred hhhhcCCceEEEEeCCCCccccCcCCCCChhHh-------ccCCcceeehhHHHHHHHH
Confidence 333334789999999986322 12345444 4579999999999998763
No 177
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=58.32 E-value=15 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.3
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHH--hCCCeEEEEehHH
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICHGQ 128 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~--~~g~~i~aic~G~ 128 (220)
+..+||+||+.++-... .-.+.+.+||++.. -.+++++.++.|.
T Consensus 40 ~~~~yD~vi~gspiy~g--~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAG--RIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred ccccCCEEEEEEEEECC--cCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 34589999997653332 24667888988654 3566666655443
No 178
>PRK06934 flavodoxin; Provisional
Probab=57.88 E-value=9.6 Score=30.46 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
..+||.||| |.+-... .--+.+..||.+..-.||.|+.+|+-
T Consensus 127 l~~YD~I~I-G~PIWwg-~~P~~V~tFLe~~d~~GK~I~pF~T~ 168 (221)
T PRK06934 127 LADYDQIFI-GYPIWWY-KMPMVMYSFFEQHDFSGKTLIPFTTH 168 (221)
T ss_pred HHhCCEEEE-Ecchhhc-cccHHHHHHHHhcCCCCCEEEEEEec
Confidence 458999999 5444322 23567889999888899999999964
No 179
>PRK13054 lipid kinase; Reviewed
Probab=56.69 E-value=19 Score=29.97 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCC-chhhHHHHHHHHhCCCeEEEEcC
Q 027708 8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 8 ~~kI~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
++|+.+++-+.-. ...+......|...|+++.+...
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t 39 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVT 39 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEe
Confidence 3578776654431 23455566778888988765443
No 180
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=56.12 E-value=21 Score=25.92 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+||.|++.... +.. ...+.+..|+.+...++|.++.+|+|
T Consensus 49 ~~~d~iilgs~t~~~g--~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 49 ENYDLVFLGTWTWERG--RTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhCCEEEEEcCeeCCC--cCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 479999886532 211 12346778888776688988888866
No 181
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=55.86 E-value=33 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+|++|++.||.+.-++..+...|+..|..+..++..
T Consensus 107 ~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 107 PQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred CeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 589999999999888999999999999877666653
No 182
>PRK11914 diacylglycerol kinase; Reviewed
Probab=54.92 E-value=31 Score=28.69 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCC----chhhHHHHHHHHhCCCeEEEEcC
Q 027708 8 KRSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 8 ~~kI~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
++|+.+|+-|..- ...+......|+..|+++.+..+
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t 47 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG 47 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4688887765321 12233567788889988765544
No 183
>PLN02204 diacylglycerol kinase
Probab=54.75 E-value=20 Score=33.10 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=37.3
Q ss_pred CCeEEEEecCC----CCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708 8 KRSVLLLCGDY----MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID 83 (220)
Q Consensus 8 ~~kI~il~~~g----~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~ 83 (220)
+|++.|++-|. -.....-.....|..++.+++++-.+.. |.....-..+.+..
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a-----------------------ghA~d~~~~~~~~~ 215 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERA-----------------------GHAFDVMASISNKE 215 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCc-----------------------chHHHHHHHHhhhh
Confidence 47888888651 1111223567788888887766544321 11111111112212
Q ss_pred CCCccEEEEcCCCCc
Q 027708 84 PTKYDGLVIPGGRAP 98 (220)
Q Consensus 84 ~~~~D~liipGG~~~ 98 (220)
...||.||+.||.|.
T Consensus 216 l~~~D~VVaVGGDGt 230 (601)
T PLN02204 216 LKSYDGVIAVGGDGF 230 (601)
T ss_pred ccCCCEEEEEcCccH
Confidence 347999999999874
No 184
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=54.75 E-value=13 Score=26.96 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=33.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~ 130 (220)
.+.|++||-|.-. ..+....++++++.++.+.|.|+++=+..
T Consensus 44 ~~~diliVeG~v~----~~~~~~~e~~~~~~~~a~~vIAvGtCA~~ 85 (131)
T PF01058_consen 44 EEADILIVEGSVP----RNMEEALEWLKELRPKAKAVIAVGTCASF 85 (131)
T ss_dssp TTTEEEEEESBEE----TGGEEHHHHHHHHHGCSSEEEEEHHHHHH
T ss_pred cCceEEEEEeecc----CCchHHHHHHHHHccCCceeEcCCCcccc
Confidence 4799999988642 13467889999999999999999887743
No 185
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=53.72 E-value=31 Score=30.51 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=31.6
Q ss_pred CCccEEEEcCCCC-ccccc--CChHHHHHHHHHHhCCCe-EEEEehHHH-HHHhCcccCCceEecCCC
Q 027708 85 TKYDGLVIPGGRA-PEYLA--MNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYPP 147 (220)
Q Consensus 85 ~~~D~liipGG~~-~~~~~--~~~~l~~~l~~~~~~g~~-i~aic~G~~-~La~aglL~g~~~T~~~~ 147 (220)
.++|+|||.=|.| .++++ +++.+ .+..++...| |.||++=+- .| +.+..+.++.|...
T Consensus 192 ~~~DvlIVaRGGGSiEDLW~FNdE~v---aRAi~~s~iPvISAVGHEtD~tL--~DfVAD~RApTPTa 254 (440)
T COG1570 192 GDVDVLIVARGGGSIEDLWAFNDEIV---ARAIAASRIPVISAVGHETDFTL--ADFVADLRAPTPTA 254 (440)
T ss_pred CCCCEEEEecCcchHHHHhccChHHH---HHHHHhCCCCeEeecccCCCccH--HHhhhhccCCCchH
Confidence 4699999984444 44432 34443 4556666777 455665442 11 13445555555443
No 186
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=53.71 E-value=37 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.058 Sum_probs=21.3
Q ss_pred cCCCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 16 GDYMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
........+......|+..|++|.....
T Consensus 8 ~~e~H~lG~~~~~~~l~~~G~~V~~lg~ 35 (119)
T cd02067 8 GGDGHDIGKNIVARALRDAGFEVIDLGV 35 (119)
T ss_pred CCchhhHHHHHHHHHHHHCCCEEEECCC
Confidence 3455667788888999999999866543
No 187
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=52.73 E-value=30 Score=26.72 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=30.5
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.++|+++|-|... .+....++.+.++..+-|.|.|+++
T Consensus 72 sPR~ADillVeG~VT----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTVN----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecCC----ccchHHHHHHHHHcccCCEEEEecc
Confidence 456899999998643 2345677788888889999998864
No 188
>PRK03670 competence damage-inducible protein A; Provisional
Probab=52.46 E-value=38 Score=27.64 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=48.5
Q ss_pred eEEEEec-C-----CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708 10 SVLLLCG-D-----YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID 83 (220)
Q Consensus 10 kI~il~~-~-----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~ 83 (220)
+++||+. + .........+...|...|+++.....-++..+ .+. ..+...-
T Consensus 2 ~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~--------------~I~----------~~l~~a~ 57 (252)
T PRK03670 2 FAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVE--------------EIK----------SVVLEIL 57 (252)
T ss_pred EEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHH--------------HHH----------HHHHHHh
Confidence 5666653 2 22345566777888899988765443221100 011 0112211
Q ss_pred CCCccEEEEcCCCCcc---------------cccCChHHHHHHHHHHhC
Q 027708 84 PTKYDGLVIPGGRAPE---------------YLAMNDSVIDLVRKFSNS 117 (220)
Q Consensus 84 ~~~~D~liipGG~~~~---------------~~~~~~~l~~~l~~~~~~ 117 (220)
...+|+||+.||.++. .+..++...+.|++++++
T Consensus 58 ~~~~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 58 SRKPEVLVISGGLGPTHDDVTMLAVAEALGRELVLCEDCLERIKEFYEE 106 (252)
T ss_pred hCCCCEEEECCCccCCCCCchHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 1258999999997642 134688999999988864
No 189
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=52.13 E-value=31 Score=26.73 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.+.|+++|-|.... +....+..+.++..+-|.|.|+++
T Consensus 71 sPr~aDvllV~G~vt~----~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTLTN----KMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCCCc----cchHHHHHHHHHcCcCCeEEEEec
Confidence 3567999999987532 245666666677777899998864
No 190
>PRK06703 flavodoxin; Provisional
Probab=52.02 E-value=49 Score=24.20 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCccEEEEcCCC-Cccccc-CChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGR-APEYLA-MNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~-~~~~~~-~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.++|.|++.... +....+ .-..+.+++++..-+++.++.+++|
T Consensus 47 ~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 47 LAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred hcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 468888885421 111111 1233445555444457888777765
No 191
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=51.84 E-value=29 Score=28.26 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.0
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+..++|++|+.||.| .++..++.+...+.||.+|-.|.
T Consensus 22 ~~~~~Dlvi~iGGDG--------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDG--------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCH--------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 445799999999855 45566677667788988888876
No 192
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=50.66 E-value=13 Score=23.64 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHhCCCeEEEEehHHH
Q 027708 113 KFSNSGKTIASICHGQL 129 (220)
Q Consensus 113 ~~~~~g~~i~aic~G~~ 129 (220)
+.+++||.|.++|.|-+
T Consensus 41 ~~Fr~GKsIiAVleGe~ 57 (71)
T PF09558_consen 41 QSFRRGKSIIAVLEGEC 57 (71)
T ss_pred HHHcCCceEEEEEcCce
Confidence 45678999999999864
No 193
>PRK05569 flavodoxin; Provisional
Probab=49.07 E-value=97 Score=22.19 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=25.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHH---hCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS---NSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~---~~g~~i~aic~G 127 (220)
.++|.|++............+.+..++.++. -++|.++.++++
T Consensus 47 ~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 47 LEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred hhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 4799999955321111111245566666554 368999888864
No 194
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=48.96 E-value=25 Score=26.03 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCeEEEEecCCCCc---hhhHHHHHHHHhCCC---eEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCC
Q 027708 8 KRSVLLLCGDYMED---YEAMVPFQALLAFGV---SVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDE 81 (220)
Q Consensus 8 ~~kI~il~~~g~~~---~e~~~~~~~l~~ag~---~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~ 81 (220)
+.||+|+....... .=+....+.|...|. +++++...+ +.-+++....-+..
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPG----------------------a~ElP~a~~~l~~~ 60 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPG----------------------AFELPLAAKRLAES 60 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESS----------------------GGGHHHHHHHHHHC
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCC----------------------HHHHHHHHHHHhcc
Confidence 46899999875432 223456788888876 555554322 22222333333322
Q ss_pred CCCCCccEEEEcCC--CC--ccc-ccCChHHHHHHHHHHhCCCeEE
Q 027708 82 IDPTKYDGLVIPGG--RA--PEY-LAMNDSVIDLVRKFSNSGKTIA 122 (220)
Q Consensus 82 ~~~~~~D~liipGG--~~--~~~-~~~~~~l~~~l~~~~~~g~~i~ 122 (220)
.+||+++..|- .| ..+ +..+.....+.+-..+.++||.
T Consensus 61 ---~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~ 103 (144)
T PF00885_consen 61 ---GRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVI 103 (144)
T ss_dssp ---STESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred ---cCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEE
Confidence 36999999883 22 221 2234444455555566788865
No 195
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=48.78 E-value=27 Score=27.25 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=25.3
Q ss_pred CeEEEEecC-CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+||.+...+ .............|+..|++|..++.
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~ 118 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGR 118 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCC
Confidence 566666655 44456677888999999999876654
No 196
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.08 E-value=52 Score=24.05 Aligned_cols=37 Identities=19% Similarity=-0.007 Sum_probs=26.4
Q ss_pred CCeEEEEecC-CCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
++||.+...+ .............|+.+|++|..++..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 3566555543 455677778888999999999887654
No 197
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=46.85 E-value=15 Score=22.88 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=13.2
Q ss_pred HHhCCCeEEEEehHHH
Q 027708 114 FSNSGKTIASICHGQL 129 (220)
Q Consensus 114 ~~~~g~~i~aic~G~~ 129 (220)
-+++||.|.++|.|-+
T Consensus 40 eFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 40 EFKRGKSIIAVCEGEI 55 (67)
T ss_pred HHcCCCeEEEEEecce
Confidence 4568999999998864
No 198
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=46.79 E-value=20 Score=29.98 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=31.8
Q ss_pred CcCCCCCCCccEEEEcCCCCc-cccc---CChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708 78 TFDEIDPTKYDGLVIPGGRAP-EYLA---MNDSVIDLVRKFSNSGKTIASICHGQLI 130 (220)
Q Consensus 78 ~l~~~~~~~~D~liipGG~~~-~~~~---~~~~l~~~l~~~~~~g~~i~aic~G~~~ 130 (220)
+++++....||++||.|.+-- ..+. -=+++.+.+.....+.....-+|-|+..
T Consensus 90 ~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 90 TFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp -HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 566666678999999997531 1111 1245666666666667889999999976
No 199
>PRK01215 competence damage-inducible protein A; Provisional
Probab=46.68 E-value=52 Score=27.01 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=49.2
Q ss_pred CCeEEEEecC-----C-CCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCC
Q 027708 8 KRSVLLLCGD-----Y-MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDE 81 (220)
Q Consensus 8 ~~kI~il~~~-----g-~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~ 81 (220)
++|++|+..- | ........+...|...|+++.....-++..+ . +. ..+.+
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~--------------~--------I~--~~l~~ 58 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIE--------------E--------IV--SAFRE 58 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHH--------------H--------HH--HHHHH
Confidence 4589988742 1 1234455677778889988755433221000 0 00 11222
Q ss_pred CCCCCccEEEEcCCCCcc---------------cccCChHHHHHHHHHHhC
Q 027708 82 IDPTKYDGLVIPGGRAPE---------------YLAMNDSVIDLVRKFSNS 117 (220)
Q Consensus 82 ~~~~~~D~liipGG~~~~---------------~~~~~~~l~~~l~~~~~~ 117 (220)
. ....|+||+.||.++. .+..+++..+++++++++
T Consensus 59 a-~~~~DlVIttGG~g~t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~ 108 (264)
T PRK01215 59 A-IDRADVVVSTGGLGPTYDDKTNEGFAKALGVELELNEDALRMILEKYEK 108 (264)
T ss_pred H-hcCCCEEEEeCCCcCChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 2 1257999999997642 124578888999887753
No 200
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.50 E-value=60 Score=22.64 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=30.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+-|++|+..-.| ..+++.+.++.+.++|.++.+++..+
T Consensus 45 ~~~d~~I~iS~sG-----~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSG-----ETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCc-----CCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3577888876433 56789999999999999999999653
No 201
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=46.24 E-value=31 Score=26.06 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=27.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
..+||.|++..+..- -..++.+.++|++.. +|.|+-+++
T Consensus 37 ~~~yD~i~lG~w~d~--G~~d~~~~~fl~~l~--~KkV~lF~T 75 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDK--GTPDKDMKEFLKKLK--GKKVALFGT 75 (160)
T ss_pred CCCCCEEEEEcCccC--CCCCHHHHHHHHHcc--CCeEEEEEe
Confidence 368999999665432 246889999999975 566665554
No 202
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=45.68 E-value=23 Score=26.78 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC 42 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s 42 (220)
.++|.|++-+|-+--+-......|...|++|.++.
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 47999999999999999999999999999998843
No 203
>PLN02727 NAD kinase
Probab=45.48 E-value=1.2e+02 Score=29.67 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
...|++|+.||.| .++..++.+...+.||.+|-.|..
T Consensus 742 ~~~DLVIvLGGDG--------TlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 742 ERVDFVACLGGDG--------VILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred cCCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEeCCCc
Confidence 3689999999855 455666666677889999988874
No 204
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=44.86 E-value=90 Score=25.22 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCc---CcCCCCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNA---TFDEIDP 84 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~---~l~~~~~ 84 (220)
-+||+++.. +...--....+.|...|++|.....-+...+ .++. .+.++. ...++..
T Consensus 120 ~~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~---~~ia---------------~i~p~~i~~~~~~~~~ 179 (239)
T TIGR02990 120 VRRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLGLTDD---REMA---------------RISPDCIVEAALAAFD 179 (239)
T ss_pred CCEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccCCCCC---ceee---------------ecCHHHHHHHHHHhcC
Confidence 368888876 2222333456678888988755522111000 0010 112211 1122234
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH--HHHhCc
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL--ILAAAD 135 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~--~La~ag 135 (220)
++.|+||+++. + + +.-++++-|.+. -||||.+.=...+ .|-.+|
T Consensus 180 ~~aDAifisCT-n---L-rt~~vi~~lE~~--lGkPVlsSNqat~W~~Lr~~G 225 (239)
T TIGR02990 180 PDADALFLSCT-A---L-RAATCAQRIEQA--IGKPVVTSNQATAWRCLRLCG 225 (239)
T ss_pred CCCCEEEEeCC-C---c-hhHHHHHHHHHH--HCCCEEEHHHHHHHHHHHHcC
Confidence 57999999863 2 1 233444444444 3999987666553 344445
No 205
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=44.83 E-value=32 Score=24.38 Aligned_cols=28 Identities=25% Similarity=-0.064 Sum_probs=21.1
Q ss_pred CCCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 17 DYMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
..............|+..||++...++.
T Consensus 9 gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 9 LDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 4455667777888999999998777653
No 206
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=44.37 E-value=49 Score=26.49 Aligned_cols=38 Identities=8% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.|+++|-|.-. .++....+.+++..++-|.|.|+++
T Consensus 49 ~~~dil~VeG~i~----~~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 49 PEMDVALVEGSVC----LQDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CCccEEEEeCCCC----CCccHHHHHHHHHhccCCEEEEeec
Confidence 3689999988653 2345578899999999999998865
No 207
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=44.33 E-value=49 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.+.|+++|-|... .+....+..++++..+-|.|.|+++
T Consensus 70 sPR~aDillVeG~VT----~~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 70 SPRQADMLMVMGTIA----KKMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CCccceEEEEEecCC----cccHHHHHHHHHhcCCCCeEEEEec
Confidence 456899999998643 2346777777777778999998864
No 208
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=44.26 E-value=46 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEE
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 124 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~ai 124 (220)
..+=|+||+....| +++.+++.++.+.++|..+.++
T Consensus 101 ~~~gDvli~iS~SG-----~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSG-----NSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS------SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCC-----CCHHHHHHHHHHHHCCCEEEEE
Confidence 34678888877655 5789999999999999988876
No 209
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=43.62 E-value=67 Score=25.15 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+||+||+....+. . -++.-.+-|+++.++|+.++++..++
T Consensus 51 ~~~Dvvv~~~~~~~-~--l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 51 KGYDVVVFYNTGGD-E--LTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp CT-SEEEEE-SSCC-G--S-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred cCCCEEEEECCCCC-c--CCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 48999999876531 1 36677788888888999999998443
No 210
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=43.34 E-value=2e+02 Score=24.88 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=56.6
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccc-cCcccccCcCcCCCCCCCc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET-RGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~i~~~~~l~~~~~~~~ 87 (220)
.+|++++.+.....|.......++..|..-.-. ..... -. .+... .+. .....+++++. +.
T Consensus 88 ~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~-~~~~~-------~~-------~~~~~~~~~-~~~~~sl~die--~a 149 (366)
T cd02774 88 SKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNS-NNFLE-------NN-------NYFNLDLEN-YLFNNSLKNLD--KS 149 (366)
T ss_pred ccEEEEECCCCCHHHHHHHHHHHHHhCCCceec-ccccc-------cc-------ccccccccC-CccCCCHHHHh--hC
Confidence 579999999888888888888887655321110 00000 00 00000 011 12234666653 89
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhC-CCeEEEEeh
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNS-GKTIASICH 126 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~-g~~i~aic~ 126 (220)
|++++.|. ++. ...|-+-..|++...+ +..|..|..
T Consensus 150 d~illiG~-n~~--~e~Pvl~~rlrka~~~~~~ki~vi~~ 186 (366)
T cd02774 150 DLCLLIGS-NLR--VESPILNIRLRNRYNKGNKKIFVIGN 186 (366)
T ss_pred CEEEEEcC-Ccc--hhhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999985 222 3577788888888755 567776654
No 211
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.22 E-value=72 Score=20.35 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=27.3
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEe
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 125 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic 125 (220)
+=|++++..-.+ ..+++.+.++...++|.++.+++
T Consensus 47 ~~d~~i~iS~sg-----~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSG-----RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCC-----CCHHHHHHHHHHHHcCCeEEEEe
Confidence 557777765433 36788899999999999999998
No 212
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=42.70 E-value=1.1e+02 Score=28.68 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.++|+|.-..+ ........|+..|+++..+..- ++. +.. .. -.-+..+.++ .+|
T Consensus 3 ~~~VLVTRp~~----qa~~la~~L~~~G~~vi~~Pli---------~i~-------p~~---~~-~~l~~~l~~L--~~y 56 (656)
T PRK06975 3 AFTVVVTRPDG----QSAALAAQLAAAGLDVLDFPLL---------DIA-------PVA---DD-APLRAALARL--SDY 56 (656)
T ss_pred CCEEEEeCcHh----HHHHHHHHHHHcCCCEEEcccE---------Eee-------CCC---Ch-HHHHHHHHhC--CCC
Confidence 35666665554 3455667888999887665221 000 000 00 0001122333 489
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH-HHHhCccc
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAAADVV 137 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~-~La~aglL 137 (220)
|.||+.+..+...+ .+.++.....+.++++|+.++. .|.+.|+-
T Consensus 57 d~iIFTS~nAV~~~------~~~l~~~~~~~~~i~AVG~~Ta~aL~~~Gi~ 101 (656)
T PRK06975 57 ALVVFVSPNAVDRA------LARLDAIWPHALPVAVVGPGSVAALARHGIA 101 (656)
T ss_pred CEEEEECHHHHHHH------HHHHHhhCccCCeEEEECHHHHHHHHHcCCC
Confidence 99999987665432 1222222234678899998886 56666653
No 213
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=42.67 E-value=60 Score=25.23 Aligned_cols=36 Identities=17% Similarity=0.055 Sum_probs=27.1
Q ss_pred CeEEEEecC-CCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
.||.+...+ .............|+..||+|..++.+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 466555554 566778888899999999999887654
No 214
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=42.02 E-value=41 Score=25.03 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.+.|+++|.|.... +....+.-+.++..+-|.|.|+++
T Consensus 54 sPr~aDvllVtG~vt~----~~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 54 SPRQADVMIVAGTVTK----KMAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCCcceEEEEecCCcH----HHHHHHHHHHHhccCCceEEEecc
Confidence 3457999999986432 123333333344445888888864
No 215
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.87 E-value=50 Score=26.18 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=22.1
Q ss_pred eEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 10 kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+|++++.. .|...-+.+..+.++..|+.+.+...
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDA 37 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 47888763 23333445666778888998877654
No 216
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.62 E-value=1.9e+02 Score=23.51 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=21.7
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+.|++++.||.|. ++..++.+ ++||.+|-.|.
T Consensus 41 ~~d~vi~iGGDGT--------~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 41 TADLIIVVGGDGT--------VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred CCCEEEEECCcHH--------HHHHHHHc---CCCEEEEeCCC
Confidence 6799999998663 22333333 78888888776
No 217
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=41.44 E-value=81 Score=23.31 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=31.3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
.+-|++|+.+..| .++.+++.++.+.++|.++.+++.
T Consensus 78 ~~~D~~i~iS~sG-----~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 78 QKGDVLLGISTSG-----NSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CCCCEEEEEcCCC-----CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3568888887655 578999999999999999999996
No 218
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=41.31 E-value=66 Score=25.00 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=28.0
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+|++||-|| + ..+.++++.-++.+.|..+.+-+.=.
T Consensus 102 ~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 102 SPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 7999999776 3 35678888888888887777766433
No 219
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.28 E-value=2e+02 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
+.|.+|+.||.| .++...+.+...+.||.+|-.|..
T Consensus 348 ~~dlvi~lGGDG--------T~L~aa~~~~~~~~PilGin~G~l 383 (569)
T PRK14076 348 EISHIISIGGDG--------TVLRASKLVNGEEIPIICINMGTV 383 (569)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 589999999855 445566666667889999988873
No 220
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=41.15 E-value=1.6e+02 Score=25.08 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=48.8
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
+||+|+=..|+...|+.-.+.--.-...++..++.....+. .+.- .|..+... .+++.+..+.|
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~--------------~~~~-~~~~~~v~-~~~~~~~~~~D 68 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE--------------TLRF-GGKSVTVQ-DAAEFDWSQAQ 68 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc--------------eEEE-CCcceEEE-eCchhhccCCC
Confidence 69999999999888887644431114456555544322111 1211 11112221 22333224689
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEE
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 124 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~ai 124 (220)
++|.+.+++ ...+|..++.++|..|.-.
T Consensus 69 vvf~a~p~~--------~s~~~~~~~~~~g~~VIDl 96 (336)
T PRK08040 69 LAFFVAGRE--------ASAAYAEEATNAGCLVIDS 96 (336)
T ss_pred EEEECCCHH--------HHHHHHHHHHHCCCEEEEC
Confidence 999976543 3445666666666655433
No 221
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=40.58 E-value=71 Score=25.14 Aligned_cols=35 Identities=14% Similarity=-0.002 Sum_probs=29.4
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+|+.|++.||....++..+...++..|..+..++.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~Vgv 143 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGV 143 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeC
Confidence 68999999998877788888889999988777754
No 222
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=40.43 E-value=59 Score=26.04 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=40.0
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEe---cCCCCHHHHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT---AYPPVKPVLI 153 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T---~~~~~~~~l~ 153 (220)
.+.+|+++|... .| ...+.+|+.+ ++|+.++|.++...|. ..||+++ +.+...+.++
T Consensus 67 ~~GvdaiiIaCf-------~D-Pgl~~~Re~~--~~PviGi~eAsv~~A~---~vgrrfsViTtt~rs~~il~ 126 (230)
T COG4126 67 EQGVDAIIIACF-------SD-PGLAAARERA--AIPVIGICEASVLAAL---FVGRRFSVITTTERSRPILE 126 (230)
T ss_pred ccCCcEEEEEec-------CC-hHHHHHHHHh--CCCceehhHHHHHHHH---HhcceEEEEecCcccHHHHH
Confidence 346999999652 24 6777888887 7899999999988764 4677765 4455444443
No 223
>PRK06242 flavodoxin; Provisional
Probab=40.28 E-value=54 Score=23.79 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHh-CCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-SGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~-~g~~i~aic~G~ 128 (220)
.++|.|++...... ..-.+.+.+||.+... .+|+++.+|++.
T Consensus 42 ~~~d~ii~g~pvy~--~~~~~~~~~fl~~~~~~~~k~~~~f~t~g 84 (150)
T PRK06242 42 SEYDLIGFGSGIYF--GKFHKSLLKLIEKLPPVSGKKAFIFSTSG 84 (150)
T ss_pred hHCCEEEEeCchhc--CCcCHHHHHHHHhhhhhcCCeEEEEECCC
Confidence 48999999543111 1245678888877644 689998888765
No 224
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=40.28 E-value=82 Score=27.51 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK 45 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 45 (220)
+|+|.+.+..+............|.+.|.+|.++-...
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~ 41 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTES 41 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchh
Confidence 46999999999988888888899999999998886654
No 225
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=40.22 E-value=2.6e+02 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=27.0
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~ 129 (220)
++|++|+.||.| .++...+.+.....||.+|-.|..
T Consensus 262 ~~DlVIsiGGDG--------TlL~Aar~~~~~~iPILGIN~G~L 297 (508)
T PLN02935 262 KVDLVITLGGDG--------TVLWAASMFKGPVPPVVPFSMGSL 297 (508)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhccCCCcEEEEeCCCc
Confidence 689999999855 444555666667889999987763
No 226
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.35 E-value=78 Score=22.19 Aligned_cols=38 Identities=5% Similarity=0.163 Sum_probs=29.9
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+-|++|+....| ..+++.+.++.+.++|.++.+++...
T Consensus 47 ~~dl~I~iS~SG-----~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 47 EKSVVILASHSG-----NTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CCcEEEEEeCCC-----CChHHHHHHHHHHHcCCeEEEEECCC
Confidence 458888877544 57788999999999999999998543
No 227
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=39.31 E-value=23 Score=29.58 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=35.2
Q ss_pred CcCCCCCCCccEEEEcCCCCc-cccc---CChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708 78 TFDEIDPTKYDGLVIPGGRAP-EYLA---MNDSVIDLVRKFSNSGKTIASICHGQLI 130 (220)
Q Consensus 78 ~l~~~~~~~~D~liipGG~~~-~~~~---~~~~l~~~l~~~~~~g~~i~aic~G~~~ 130 (220)
+++++....||++||.|.+-- ..+. -=+++.+.+.....+.....-+|-|+..
T Consensus 91 ~f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqA 147 (300)
T TIGR01001 91 TFEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQA 147 (300)
T ss_pred CHHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 556665678999999997531 1111 1145666666666667788889999975
No 228
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=39.08 E-value=95 Score=25.50 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=40.2
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCC
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 139 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g 139 (220)
..+++|.|..++. ..+....++.+++-+++..|.+.+-++.-+.++|+.++
T Consensus 95 ~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC~a~~l~k~gl~~~ 145 (258)
T cd00587 95 PGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGCAAEALLKLGLEDG 145 (258)
T ss_pred CeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecchHHHHHHhcCCccc
Confidence 4455555555543 45678889999999999999999889999999999887
No 229
>PRK13055 putative lipid kinase; Reviewed
Probab=39.05 E-value=45 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.005 Sum_probs=22.3
Q ss_pred CeEEEEecCCCC----chhhHHHHHHHHhCCCeEEEEcC
Q 027708 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+|+.|++-|..- ...+......|+..|+++.+...
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t 41 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQT 41 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 588888765321 12344567788889988766433
No 230
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=39.03 E-value=71 Score=24.62 Aligned_cols=36 Identities=17% Similarity=-0.048 Sum_probs=29.2
Q ss_pred CeEEEEecCCCCch----hhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGDYMEDY----EAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~g~~~~----e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+||+|++.||.+.. .+..+...|+..|..+..++..
T Consensus 109 ~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG 148 (192)
T cd01473 109 PKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVG 148 (192)
T ss_pred CeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEec
Confidence 69999999998853 3566778899999988888764
No 231
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.95 E-value=49 Score=27.21 Aligned_cols=36 Identities=6% Similarity=-0.097 Sum_probs=23.1
Q ss_pred CeEEEEecC--CCC--chhhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGD--YME--DYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~--g~~--~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+|++|++-+ |-. ...+......|...|.++.+...+
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~ 41 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW 41 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec
Confidence 689988876 432 222345567788888887765543
No 232
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=38.87 E-value=70 Score=24.99 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=30.7
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCC
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (220)
||+|-==||+....+..+.+.|++.|++|.++.|...
T Consensus 2 ~ILlTNDDGi~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 2 RILLTNDDGIDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp EEEEE-SS-TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred eEEEEcCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 7777777999999999999999888899999998653
No 233
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.54 E-value=99 Score=22.63 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCccEEEEcCCCCccccc-CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcc
Q 027708 85 TKYDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 136 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~-~~~~l~~~l~~~~~~g~~i~aic~G~~~La~agl 136 (220)
...|+|++-||......- .-.+..+++.+. .++++.++|-=. +..++|.
T Consensus 84 n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCfm~-mF~ragW 133 (154)
T COG4090 84 NSADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCFMN-MFERAGW 133 (154)
T ss_pred ccccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeHHH-HHHHcCc
Confidence 359999999998754332 334566666643 356799999654 4456663
No 234
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=38.40 E-value=1.9e+02 Score=22.98 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
..+||+||.=+-.+...+ +++..+-+.++.++|+=++++=+|.
T Consensus 56 L~~~D~lV~~~~~~~~~l--~~eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 56 LAETDVLLWWGHIAHDEV--KDEIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HhcCCEEEEeCCCCcCcC--CHHHHHHHHHHHHcCCCEEEECCCc
Confidence 458999998332221222 4455556666777777777666555
No 235
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=38.25 E-value=82 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
|||++.+.-.............|++.|++|.++-.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 58999999888888889999999999999986643
No 236
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.00 E-value=88 Score=21.82 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
.+-|++|+.+..| ..+++++.++.+.++|.++.+++.
T Consensus 42 ~~~dl~I~iS~SG-----~t~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 42 DRKTLVIAVSYSG-----NTEETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCEEEEEECCC-----CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3568888877544 577889999999999999999984
No 237
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.96 E-value=86 Score=23.62 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+-|++|+.+..| ..+.+.+.++.+.++|.+|.+|+.-
T Consensus 71 ~~~Dv~I~iS~sG-----~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 71 KKGDLLIAISGSG-----ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678888877544 5788999999999999999999853
No 238
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.43 E-value=54 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=26.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.++|++++.||.| .++..++.+...+.||.+|-.|.
T Consensus 32 ~~~D~vi~iGGDG--------T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG--------FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH--------HHHHHHHHhcCCCCcEEEEecCC
Confidence 3689999999855 44455566666778888888775
No 239
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=36.95 E-value=64 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=26.7
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.+.|+++|.|.... +..+.+.-+.++..+-|.|.|+++
T Consensus 70 sPR~ADvllVtG~VT~----~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 70 SPRQADMILVLGTITY----KMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred CcccceEEEEeccCch----hhHHHHHHHHHhcCCCCeEEEecc
Confidence 4568999999885331 244555555555666888888864
No 240
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=36.74 E-value=79 Score=25.60 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
++.|+.+|=|+-. |++-.+.+++..++.+.|.|+++=+
T Consensus 50 PEvDValVEGsV~------~ee~lE~v~ElRekakivVA~GsCA 87 (247)
T COG1941 50 PEVDVALVEGSVC------DEEELELVKELREKAKIVVALGSCA 87 (247)
T ss_pred CcccEEEEecccC------cHHHHHHHHHHHHhCcEEEEEecch
Confidence 3599999988632 7788899999999999999887644
No 241
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=36.53 E-value=1.1e+02 Score=22.51 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
.+|+.|++.||....++....+.++..|..+..++.+
T Consensus 103 ~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 103 VPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 4689999999988767777788899999888777653
No 242
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=36.48 E-value=56 Score=24.67 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=24.0
Q ss_pred CCeEEEEecCCCC---chhhHHHHHHHHhCC---CeEEEEcC
Q 027708 8 KRSVLLLCGDYME---DYEAMVPFQALLAFG---VSVDAACP 43 (220)
Q Consensus 8 ~~kI~il~~~g~~---~~e~~~~~~~l~~ag---~~v~~~s~ 43 (220)
..||+|++....+ ..=+.+..+.|.+.| .+++++..
T Consensus 10 ~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~V 51 (158)
T PRK12419 10 PQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDV 51 (158)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 4699999976433 345667788888888 34555533
No 243
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.44 E-value=56 Score=27.43 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFG 35 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag 35 (220)
++++++....++..++....+.|+...
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~ 182 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERF 182 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhC
Confidence 679999988888999999999888754
No 244
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=36.22 E-value=69 Score=24.81 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.++|+++|.|... .+..+.+.-+.++..+-|.|.|+++
T Consensus 70 SPR~ADillVtG~VT----~~m~~~l~r~ye~~p~pK~VIAvGs 109 (183)
T PRK14815 70 SPRQADVMIVAGTVT----YKMALAVRRIYDQMPEPKWVIAMGA 109 (183)
T ss_pred CCccccEEEEeCcCc----hhhHHHHHHHHHhCCCCCEEEEecc
Confidence 456899999988533 2344556666667778899988854
No 245
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=36.19 E-value=82 Score=24.36 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=31.4
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+-|++|+....| .++.+++.++.+.++|.++.+++.-
T Consensus 110 ~~~Dv~I~iS~SG-----~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLGISTSG-----NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3568888877655 5789999999999999999999964
No 246
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.98 E-value=73 Score=26.69 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=23.7
Q ss_pred CccEEEEcCCCC-cccc--cCChHHHHHHHHHHhCCCe-EEEEehHH
Q 027708 86 KYDGLVIPGGRA-PEYL--AMNDSVIDLVRKFSNSGKT-IASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~-~~~~--~~~~~l~~~l~~~~~~g~~-i~aic~G~ 128 (220)
+||+|||.=|.| ..++ .+++.+.+.|.++ ..| |.||+|=.
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~---~~PvisaIGHe~ 118 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAAS---PIPVISAIGHET 118 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhC---CCCEEEecCCCC
Confidence 699999984444 3343 3566666555543 455 55666544
No 247
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.93 E-value=30 Score=24.03 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=25.9
Q ss_pred eEEEEec-CCCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 10 SVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 10 kI~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
|+.+... .......+..+...|+..|+++.++..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 4444444 445578999999999999999988854
No 248
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=35.79 E-value=2e+02 Score=21.98 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=42.7
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcC-cCCCCCCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNAT-FDEIDPTK 86 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~-l~~~~~~~ 86 (220)
.++|++++.-+ .+.+....++.+...|.+|.+=-..... . ..+........+.-..+..|+ ..|... ....+..+
T Consensus 34 a~~I~~Y~~~~-~Evdt~~li~~~~~~gk~v~lP~v~~~~-~-~~m~f~~~~~~~~l~~~~~gI-~EP~~~~~~~~~~~~ 109 (182)
T PRK10333 34 AHTVAVFLSFD-GELDTQPLIEQLWRAGKRVYLPVLHPFS-A-GNLLFLNYHPQSELVMNRLKI-HEPKLDVRDVLPLSR 109 (182)
T ss_pred CCEEEEEcCCC-CCcCHHHHHHHHHHCCCEEEEeEEecCC-C-CEEEEEECCCCCccccCCCCC-CCCCccccccCCccc
Confidence 46899888765 4666777777777778665332111110 0 011122121111133445565 344322 11133457
Q ss_pred ccEEEEcCC
Q 027708 87 YDGLVIPGG 95 (220)
Q Consensus 87 ~D~liipGG 95 (220)
.|++||||-
T Consensus 110 iDlviVP~l 118 (182)
T PRK10333 110 LDVLITPLV 118 (182)
T ss_pred CCEEEeCce
Confidence 899999983
No 249
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=35.52 E-value=1.3e+02 Score=24.58 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708 7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK 86 (220)
Q Consensus 7 ~~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~ 86 (220)
+.+||+|-=..+ .-......|++.|.++..+.. +++. +. ... ..+..+.++ .+
T Consensus 17 ~g~~IlvTRp~~----q~~~l~~~L~~~G~~~~~~P~---------i~i~-------~~---~~~--~~~~~l~~l--~~ 69 (266)
T PRK08811 17 AAWTLISLRPSG----EHAPLRRAVARHGGRLLALSP---------WRLQ-------RL---DTA--QARDALRQA--LA 69 (266)
T ss_pred CCCEEEEeCCHH----HHHHHHHHHHHCCCcEEEcCc---------eeec-------CC---Cch--hHHHHHhhc--cc
Confidence 467887665544 446667899999998766522 1010 00 000 011233333 37
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHH-HHhCccc
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVV 137 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~-La~aglL 137 (220)
||+||+.+..+.+.+. .++......+.++++|+.++.- |.+.|+.
T Consensus 70 ~d~iiftS~NAV~~~~------~~~~~~~~~~~~~~AVG~~TA~aL~~~G~~ 115 (266)
T PRK08811 70 APIVVFTSPAAVRAAH------RLLPLQRPARAHWLSVGEGTARALQACGID 115 (266)
T ss_pred CCEEEEECHHHHHHHH------HHhcccCccCCeEEEECHHHHHHHHHcCCC
Confidence 9999998865544321 1111112246788999988864 4555643
No 250
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=35.51 E-value=18 Score=33.67 Aligned_cols=45 Identities=11% Similarity=0.253 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHH
Q 027708 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKP 150 (220)
Q Consensus 103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~ 150 (220)
+..++++||+..-+.+...+ ....++|.-.+-.|+++|-||++++
T Consensus 504 d~~eL~~WIk~nt~~~AvFA---GsM~lma~vkL~T~r~ivnHPhYEd 548 (642)
T PF10034_consen 504 DTEELMEWIKSNTPPDAVFA---GSMPLMASVKLCTGRPIVNHPHYED 548 (642)
T ss_pred CHHHHHHHHHhcCCCCCeec---cCcchHHHHHHhcCCccccCcccCC
Confidence 45789999998776654322 2346888889999999999999764
No 251
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=35.29 E-value=90 Score=19.83 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=23.0
Q ss_pred EEEecCCCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 12 LLLCGDYMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 12 ~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
++++|+... +.......|+..|..+.++..
T Consensus 4 ~~i~F~st~--~a~~~ek~lk~~gi~~~liP~ 33 (73)
T PF11823_consen 4 YLITFPSTH--DAMKAEKLLKKNGIPVRLIPT 33 (73)
T ss_pred EEEEECCHH--HHHHHHHHHHHCCCcEEEeCC
Confidence 566666544 888889999999998888744
No 252
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=34.87 E-value=20 Score=31.32 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCeEEEEecCC-----CCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGDY-----MEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~g-----~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+|||.|++-+- +...=.-...-+|..+|++|+++-.+
T Consensus 60 ~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd 101 (535)
T KOG4435|consen 60 PKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTD 101 (535)
T ss_pred cceEEEEechhhccchhhhhhhcccchheeeccceEEEEecC
Confidence 58899988542 21111133444667789999998664
No 253
>PRK13337 putative lipid kinase; Reviewed
Probab=34.71 E-value=58 Score=27.09 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=21.9
Q ss_pred CeEEEEecCCCC----chhhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+|+.+++-+..- ...+......|+..|+++.+...+
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~ 41 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT 41 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 578887765321 123334566788899887665444
No 254
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=34.68 E-value=84 Score=24.31 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.+.|+++|.|... .+....+.-+.++..+-|.|.|+++
T Consensus 78 sPRhADvllVtG~VT----~~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 78 SPRQADMIMVCGTIT----NKMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred CCCcceEEEEecCCc----chhHHHHHHHHHhcCCCCEEEEecc
Confidence 356799999988543 1233444555556678899988864
No 255
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=34.52 E-value=1.6e+02 Score=27.85 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=51.7
Q ss_pred chhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcc-
Q 027708 21 DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE- 99 (220)
Q Consensus 21 ~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~- 99 (220)
..++.+.++.|+-+-++|.++|-+- | ..+ .+ +++.|+||=.|--+..
T Consensus 467 ~ysy~GvlE~LSG~p~dV~FisFdD-------------------i--------~~~----gi-~~didViIN~G~a~ta~ 514 (719)
T TIGR02336 467 TYSYYGILECLSGMPVEVEFISFDD-------------------I--------LEH----GI-DSDIDVIINGGDADTAW 514 (719)
T ss_pred hhhHHHHHHHhcCCCeeEEEecHHH-------------------H--------hhc----CC-CcCCcEEEecCcccccc
Confidence 3566667777776777777776431 1 001 11 3578998888754321
Q ss_pred ---cccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 100 ---YLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 100 ---~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
....|+.+...|+++..+|..+.+++.-.
T Consensus 515 SGG~~W~d~~~~~aLr~fV~~GGglIGVgDps 546 (719)
T TIGR02336 515 SGGDVWTNPKLVETVRAWVRGGGGFVGVGEPS 546 (719)
T ss_pred cCccccCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 24679999999999999999998888654
No 256
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=34.39 E-value=2.7e+02 Score=23.02 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+.+|++++-||.| -++...+.+.+.+.+|.++-.|.
T Consensus 54 ~~~d~ivvlGGDG--------tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 54 EKADLIVVLGGDG--------TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred cCceEEEEeCCcH--------HHHHHHHHhccCCCCEEEEeCCC
Confidence 5799999988744 55677777887888999999885
No 257
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=34.06 E-value=58 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=27.1
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+||.-++|-...+....-++.+.+.|++..++.....+|.+|-
T Consensus 9 D~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 9 DYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred ecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 4666666654444333346778888888877766666666664
No 258
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=33.97 E-value=1.7e+02 Score=23.97 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=26.2
Q ss_pred CCeEEEEecCCC-----CchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGDYM-----EDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~g~-----~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
++||+|+.-... +..+.......|+..|+++..+...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 368998874322 3345578889999999999888543
No 259
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=33.76 E-value=1e+02 Score=25.79 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=27.3
Q ss_pred CCeEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+++|++++.+ .|...-+.+..+.+...|+.+.+....
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~ 64 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN 64 (330)
T ss_pred CceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 5789999963 445556667778888889998887553
No 260
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.75 E-value=62 Score=25.83 Aligned_cols=34 Identities=6% Similarity=-0.194 Sum_probs=21.2
Q ss_pred eEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 10 kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
||++++.+ .|...-..+..+.++..|+++.+...
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~ 37 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDA 37 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47888753 23333444666777778988766543
No 261
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.73 E-value=99 Score=23.28 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=30.7
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+-|++|+....| .++.+++.++.+.++|.++.+|+..
T Consensus 100 ~~~Dv~I~iS~SG-----~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 100 QPGDVLIGISTSG-----NSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568888876544 5789999999999999999999854
No 262
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=33.67 E-value=1.2e+02 Score=22.25 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=29.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
.+++.|++.||....+.......++..|..+..++..
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g 139 (164)
T cd01472 103 VPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVK 139 (164)
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999987767777777888888887777653
No 263
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=33.53 E-value=73 Score=27.44 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=56.3
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCC---CcccccCCCcccccccccCcccccCcCcCCCCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVC---PTAVHQSTGHQQTYSETRGHNFALNATFDEIDP 84 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~---~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~ 84 (220)
-+||+|+-.+|+.++.-....+-|+.++..+++...+-...+.. +.++.+++-.+ .+.......--.| .+.++ .
T Consensus 138 ~~ri~vvGieg~~DFqp~l~Aa~L~~a~~~~~t~~l~iP~ld~LR~n~~efR~vNiar-lLd~~~~~~~L~d-~l~~~-a 214 (421)
T COG3075 138 AKRIAVVGIEGLHDFQPQLAAANLRQAGLPVTTAELNLPELDVLRDNATEFRAVNIAR-LLDNEEAWPALAD-ELIPV-A 214 (421)
T ss_pred chheEEEeeccccccCHHHHHHHHHHcCCcceeccccCCChhhhhcCchhhhhcCHHH-HhcchhhhHHHHH-HHHHh-c
Confidence 47999999999999999999999999998776665443211110 01111100000 0000000000011 11221 3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS 115 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~ 115 (220)
...|.|+.|...+ .++..+.+||++..
T Consensus 215 ~~ad~V~~PAc~G----ld~~~~~~aL~~~~ 241 (421)
T COG3075 215 NTAEMVLMPACFG----LDNDELWDALNDVL 241 (421)
T ss_pred CCcceEeeceeeC----CCcHHHHHHHHHHh
Confidence 4789999998766 24667777777765
No 264
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=33.36 E-value=2.4e+02 Score=22.23 Aligned_cols=118 Identities=22% Similarity=0.245 Sum_probs=68.3
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccc-cCcccccCcCcCCCCCCCc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET-RGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~i~~~~~l~~~~~~~~ 87 (220)
++|.|++-+|-+--+-......|...|+.|++.-................ ..... .++.+.. ..+ .+.++
T Consensus 50 ~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~-----~~l~~~~~v~~~~---~~~-~~~~~ 120 (203)
T COG0062 50 RRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANL-----KSLGIGGVVKIKE---LED-EPESA 120 (203)
T ss_pred CEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHH-----HhhcCCcceeecc---ccc-ccccC
Confidence 68999999999999999999999999999888765432100000000000 00000 1111111 110 12345
Q ss_pred cEEE----EcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCC
Q 027708 88 DGLV----IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 139 (220)
Q Consensus 88 D~li----ipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g 139 (220)
|+|| =.|..++ -.+.+...|....+++++|.++..=+-+-+.+|-.-|
T Consensus 121 dvIVDalfG~G~~g~----lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~~~~ 172 (203)
T COG0062 121 DVIVDALFGTGLSGP----LREPFASLIEAINASGKPIVAVDIPSGLDADTGEVLG 172 (203)
T ss_pred CEEEEeceecCCCCC----CccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCcccC
Confidence 5544 3343332 2456667777777999999999987777666664433
No 265
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=33.14 E-value=1.4e+02 Score=25.28 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=36.1
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La 132 (220)
..+.|+|++.|..-+ . .......+|++...+.|+.++-=|+|..+.+
T Consensus 127 l~~~d~VvlsGSlP~-g-~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~ 173 (310)
T COG1105 127 LESDDIVVLSGSLPP-G-VPPDAYAELIRILRQQGAKVILDTSGEALLA 173 (310)
T ss_pred cccCCEEEEeCCCCC-C-CCHHHHHHHHHHHHhcCCeEEEECChHHHHH
Confidence 357899888775332 2 2456778999999999999999999998865
No 266
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=33.13 E-value=93 Score=23.34 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCeEEEEecCCCCc---hhhHHHHHHHHhCC---CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCC
Q 027708 8 KRSVLLLCGDYMED---YEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDE 81 (220)
Q Consensus 8 ~~kI~il~~~g~~~---~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~ 81 (220)
+.||+|+....... .=+.+..+.|...| .+++++...+ +.-+++....-..
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPG----------------------a~EiP~a~~~l~~- 68 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPG----------------------AFEIPLAAKKLAE- 68 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCC----------------------HHHHHHHHHHHHH-
Confidence 46999999875543 55677888888888 4555554322 1112222222121
Q ss_pred CCCCCccEEEEcCCC--C--ccc-ccCChHHHHHHHHHHhCCCeEE
Q 027708 82 IDPTKYDGLVIPGGR--A--PEY-LAMNDSVIDLVRKFSNSGKTIA 122 (220)
Q Consensus 82 ~~~~~~D~liipGG~--~--~~~-~~~~~~l~~~l~~~~~~g~~i~ 122 (220)
..+||+++..|-- | ..+ +..+.-...+.+-..+.++||+
T Consensus 69 --~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 69 --SGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETGVPVG 112 (154)
T ss_pred --cCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhccCCCEE
Confidence 1369999998853 2 111 1223333344444456778776
No 267
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=32.87 E-value=2e+02 Score=21.21 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=52.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY 87 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~ 87 (220)
.|+|+++-...--.-.-......|.+.||+|.-+.|+-. -..--|.+.. .++.+++ ...
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~------------------~~eiLG~k~y--~sL~dIp-e~I 74 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLA------------------GEEILGEKVY--PSLADIP-EPI 74 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccc------------------hHHhcCchhh--hcHHhCC-CCC
Confidence 478999887655555556667778888999888877321 0011122222 2455553 567
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHHHhCCC
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK 119 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~ 119 (220)
|+|-| ++..+.+.+.++++.+.+.
T Consensus 75 DiVdv--------FR~~e~~~~i~~eal~~~~ 98 (140)
T COG1832 75 DIVDV--------FRRSEAAPEVAREALEKGA 98 (140)
T ss_pred cEEEE--------ecChhhhHHHHHHHHhhCC
Confidence 77766 3556677788888887763
No 268
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.52 E-value=75 Score=25.70 Aligned_cols=35 Identities=14% Similarity=-0.145 Sum_probs=22.8
Q ss_pred eEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 10 kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+|+|++.+ .|...-+.+..+.++..|+++.+....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 38 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNAN 38 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 37888864 333344456677777889988776543
No 269
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.10 E-value=70 Score=19.51 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=22.5
Q ss_pred EEecCCCCchhhHHHHHHHHhCCCe
Q 027708 13 LLCGDYMEDYEAMVPFQALLAFGVS 37 (220)
Q Consensus 13 il~~~g~~~~e~~~~~~~l~~ag~~ 37 (220)
++++.|++..++..+++.++..|..
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~ 27 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIP 27 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCC
Confidence 5788999999999999999999864
No 270
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=32.08 E-value=1.9e+02 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=30.5
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (220)
|||+|-==||+....+..+.+.|+..| +|.++.|...
T Consensus 6 M~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 6 PHILVCNDDGIEGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 466655568999999999999999987 7999988753
No 271
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.88 E-value=1e+02 Score=21.38 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.6
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
+-|.+|+..-.+ ...++.+.++...++|.++.+++..
T Consensus 53 ~~d~vi~is~sg-----~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 53 PDDLVIIISYSG-----ETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp TTEEEEEEESSS-----TTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ccceeEeeeccc-----cchhhhhhhHHHHhcCCeEEEEeCC
Confidence 457777776333 5778999999999999999988843
No 272
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.86 E-value=1.1e+02 Score=23.48 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=30.3
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
+-|++|+.+..| .++.+.+.++...++|.++.+++.
T Consensus 106 ~~Dl~i~iS~sG-----~t~~~~~~~~~ak~~g~~~I~iT~ 141 (188)
T PRK13937 106 PGDVLIGISTSG-----NSPNVLAALEKARELGMKTIGLTG 141 (188)
T ss_pred CCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEeC
Confidence 558888887555 578999999999999999999986
No 273
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=31.13 E-value=2e+02 Score=27.25 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=55.3
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
.+|+++..+.....+...+...++..|..-. -+..... ... ... ..+. ....+++++ ++.|
T Consensus 306 ~~ia~i~g~~~~~E~~~~lkkl~~~lGs~ni-d~~~~~~---------~~~----~~~-~~~~--~~~~si~dI--e~AD 366 (687)
T PRK09130 306 EKIAAIAGDLADVESMFALKDLMQKLGSSNL-DCRQDGA---------KLD----PSL-RASY--LFNTTIAGI--EEAD 366 (687)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHcCCCcc-ccccchh---------hhh----hhh-hccC--CCCCCHHHH--HhCC
Confidence 5799999988877777877777776653210 0110000 000 000 1111 112355555 4789
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCC-eEEEEehH
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK-TIASICHG 127 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~-~i~aic~G 127 (220)
++++.|-. +. ...+.+...|++..++|. .|+.|..-
T Consensus 367 ~IlliG~N-p~--~eaPvl~~rirka~~~g~~kIivIdpr 403 (687)
T PRK09130 367 AILLIGAN-PR--FEAPVLNARIRKRWRAGGFKIAVIGEQ 403 (687)
T ss_pred EEEEEccC-cc--cccHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 99998853 22 346778888888888774 67766643
No 274
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=31.07 E-value=1.1e+02 Score=20.47 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCeEEEEehHH-HHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEEEc--CCE---EeCCCCC
Q 027708 108 IDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVD--GNI---ITGATYE 181 (220)
Q Consensus 108 ~~~l~~~~~~g~~i~aic~G~-~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~i---iTs~g~~ 181 (220)
.+++++.+++...+..+|+-- .+=.-+.+|.+|. .++. .+++| |+. +.++-..
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~------------------~DPa---Vvvvde~g~~vIplL~GH~G 60 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKD------------------TDPA---VVVVDEDGRFVIPLLGGHRG 60 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TT------------------T--E---EEEE-TT--EEEEEE-TTTT
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccC------------------CCCC---EEEEeCCCCEEEEeccCCcc
Confidence 467888998888888888644 3334445665432 1221 23333 332 3455555
Q ss_pred CHHHHHHHHHHHHccccc
Q 027708 182 GHPEFIRLFLKALGGTIT 199 (220)
Q Consensus 182 s~~~~~~~li~~l~~~~a 199 (220)
.+.+++.++-+.+++...
T Consensus 61 Gan~lA~~iA~~lga~~V 78 (84)
T PF11760_consen 61 GANELARQIAELLGAQPV 78 (84)
T ss_dssp -HHHHHHHHHHHTT-EE-
T ss_pred hHHHHHHHHHHHhCCEEE
Confidence 589999999999887754
No 275
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=30.92 E-value=2.4e+02 Score=21.40 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=22.9
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEE
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDA 40 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~ 40 (220)
.++|++++.-+ .+.+.....+.+...|..+.+
T Consensus 40 ~~~I~~Y~~~~-~E~~t~~li~~~~~~~k~v~l 71 (181)
T TIGR02727 40 AKTIALYLPLR-GEVDTRPLIEQLLKEGKRVAL 71 (181)
T ss_pred CCEEEEEcCCC-CCcCHHHHHHHHHHCCCEEEE
Confidence 46899988866 466677777888777766533
No 276
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=30.68 E-value=2.3e+02 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=29.7
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCC
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (220)
||+|-==||+....+..+.+.|+..| +|.++.|...
T Consensus 2 ~ILlTNDDGi~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 2 KILVTNDDGVHSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred eEEEEcCCCCCCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 55555568999999999999999887 7999988653
No 277
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.33 E-value=1.3e+02 Score=23.47 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=31.9
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
..+-|++|+....| ..+.+++.++.+.++|.++.+++..
T Consensus 111 ~~~~DllI~iS~SG-----~t~~vi~a~~~Ak~~G~~vI~iT~~ 149 (196)
T PRK13938 111 ARPGDTLFAISTSG-----NSMSVLRAAKTARELGVTVVAMTGE 149 (196)
T ss_pred CCCCCEEEEEcCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34678888887544 5788999999999999999999963
No 278
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=30.32 E-value=89 Score=23.70 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=24.0
Q ss_pred CccEEEEcCCCCccc---------------ccCChHHHHHHHHHHhCCC
Q 027708 86 KYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGK 119 (220)
Q Consensus 86 ~~D~liipGG~~~~~---------------~~~~~~l~~~l~~~~~~g~ 119 (220)
++|+||+.||.++.. +..++...+++++++.+..
T Consensus 58 ~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~~ 106 (170)
T cd00885 58 RADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEARFARRG 106 (170)
T ss_pred CCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHHHHhcC
Confidence 689999999976421 2356777788887775433
No 279
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=30.23 E-value=19 Score=14.45 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=5.8
Q ss_pred Cchhhhccc
Q 027708 211 VSFCFQNLL 219 (220)
Q Consensus 211 ~~~~~~~~~ 219 (220)
++.+|+-||
T Consensus 3 ~pd~F~GLM 11 (11)
T PF02202_consen 3 KPDQFYGLM 11 (11)
T ss_dssp CHHHHCCC-
T ss_pred CcccceecC
Confidence 567787776
No 280
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.22 E-value=1.3e+02 Score=22.61 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
.+-|++|+.+-.| ..+.+.+.++.+.++|.++.+|+.
T Consensus 74 ~~~D~vI~iS~sG-----~t~~~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 74 GPGDLLIAISGSG-----ETSSVVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred CCCCEEEEEcCCC-----CcHHHHHHHHHHHHCCCeEEEEEC
Confidence 4678888876433 577889999999999999999885
No 281
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=28.62 E-value=1.9e+02 Score=25.02 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcccccCChHHHHHHHHH-HhCCCeEEEEehHHH
Q 027708 88 DGLVIPGGRAPEYLAMNDSVIDLVRKF-SNSGKTIASICHGQL 129 (220)
Q Consensus 88 D~liipGG~~~~~~~~~~~l~~~l~~~-~~~g~~i~aic~G~~ 129 (220)
+.+++|+|.....+..-..+.+++-++ ..++..+.+++.|+.
T Consensus 64 ~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvi 106 (360)
T COG0337 64 DSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVI 106 (360)
T ss_pred eEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHH
Confidence 346666665443332233333333332 245566666666653
No 282
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=28.30 E-value=1.4e+02 Score=25.48 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=43.5
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCC
Q 027708 90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE 163 (220)
Q Consensus 90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~ 163 (220)
|+..||..|- -|..+...++...+.+..|.++..|- .||+++.-....|...+.+...|+...-..
T Consensus 5 Il~sGG~apG---~N~~i~~~v~~~~~~g~~v~G~~~G~-----~GL~~~~~~~l~~~~v~~~~~~gGs~Lgts 70 (338)
T cd00363 5 VLTSGGDAPG---MNAAIRGVVRSAIAEGLEVYGIYEGY-----AGLVEGDIKELDWESVSDIINRGGTIIGSA 70 (338)
T ss_pred EEccCCCchh---HHHHHHHHHHHHHHCCCEEEEEecCh-----HHhCCCCeEeCCHHHhcchhhCCCeecccC
Confidence 4445555543 37788888888888888999999998 567777666555554444444455444433
No 283
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=28.18 E-value=1.5e+02 Score=23.44 Aligned_cols=36 Identities=14% Similarity=-0.082 Sum_probs=27.2
Q ss_pred CeEEEEecC-CCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
.||.+...+ .............|+..|++|..++.+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 466666655 556677788889999999999887654
No 284
>PRK03673 hypothetical protein; Provisional
Probab=28.10 E-value=85 Score=27.50 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred CeEEEEecC------CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCC
Q 027708 9 RSVLLLCGD------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI 82 (220)
Q Consensus 9 ~kI~il~~~------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~ 82 (220)
+|+.|+..- .........+...|...|+++...+.-++..+ .+. . .+...
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~--------------~i~--------~--~l~~a 57 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLD--------------ALV--------A--ILRER 57 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHH--------------HHH--------H--HHHHH
Confidence 478777641 22345566667778888988765543322100 011 0 11221
Q ss_pred CCCCccEEEEcCCCCcc--c-------------ccCChHHHHHHHHHHhC
Q 027708 83 DPTKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNS 117 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~--~-------------~~~~~~l~~~l~~~~~~ 117 (220)
...+|+||+.||.++. + +..|++..++|++++++
T Consensus 58 -~~~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~ 106 (396)
T PRK03673 58 -SQHADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEEWLAEMERFFAE 106 (396)
T ss_pred -hccCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHh
Confidence 2469999999997642 1 34688999999988864
No 285
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.08 E-value=1.2e+02 Score=24.05 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=45.0
Q ss_pred eEEEEecCC----CCchhhHHHHHHHHhCCCeEEEEcCCC-CCCCCCCcccccCCCcccccccccCcccccCcCcCCCCC
Q 027708 10 SVLLLCGDY----MEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDP 84 (220)
Q Consensus 10 kI~il~~~g----~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~ 84 (220)
||++++.+. |...-..+..+.+...|+.+.+..... ++. . . ...++.+..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~---------------------~---~-~~~i~~l~~ 55 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVA---------------------D---M-ARLIEAAIA 55 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHH---------------------H---H-HHHHHHHHH
Confidence 577877543 222333456666777888887765432 100 0 0 001111112
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
...|++++.+.. ...+.+.+++..++|.++..+..
T Consensus 56 ~~vdgiii~~~~-------~~~~~~~l~~~~~~~ipvV~~~~ 90 (271)
T cd06312 56 AKPDGIVVTIPD-------PDALDPAIKRAVAAGIPVISFNA 90 (271)
T ss_pred hCCCEEEEeCCC-------hHHhHHHHHHHHHCCCeEEEeCC
Confidence 368999886521 12233456666667888887753
No 286
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=28.03 E-value=1.9e+02 Score=27.17 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCeEEEEecC-------------CC---CchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCc
Q 027708 8 KRSVLLLCGD-------------YM---EDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGH 71 (220)
Q Consensus 8 ~~kI~il~~~-------------g~---~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 71 (220)
+.||+||-.= .. +..++.+.++.|+-.-++|.++|-+- |... |
T Consensus 435 ~~kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdD-------------------i~~~-g- 493 (716)
T PF09508_consen 435 PFKVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDD-------------------IREN-G- 493 (716)
T ss_dssp SSEEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHH-------------------HHHH---
T ss_pred cceEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHH-------------------Hhhc-C-
Confidence 5789998731 11 23678889999998889999987531 1111 1
Q ss_pred ccccCcCcCCCCCCCccEEEEcCCCCc----ccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 72 NFALNATFDEIDPTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 72 ~i~~~~~l~~~~~~~~D~liipGG~~~----~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+ +++.|+||=.|--+. .....|+.+...||++..+|.-..+|+.-+
T Consensus 494 ----------i-~~didViINaGdA~TA~SGG~~W~d~~iv~~lr~fV~~GGGfIGVGEPs 543 (716)
T PF09508_consen 494 ----------I-LEDIDVIINAGDAGTAWSGGENWKDPKIVTALREFVYNGGGFIGVGEPS 543 (716)
T ss_dssp ----------S--TT--EEEEEESTTSTTT-GGGGG-HHHHHHHHHHHHTT-EEEEEESTE
T ss_pred ----------C-cccCCEEEecCcccccccCccccCCHHHHHHHHHHHHcCCCEEEcCCCc
Confidence 1 357899998875432 124679999999999999998888887554
No 287
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.93 E-value=1.4e+02 Score=26.46 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=30.5
Q ss_pred CccEEEEcCCCC-cccc--cCChHHHHHHHHHHhCCCe-EEEEehHHH-HHHhCcccCCceEecCCC
Q 027708 86 KYDGLVIPGGRA-PEYL--AMNDSVIDLVRKFSNSGKT-IASICHGQL-ILAAADVVKGRKCTAYPP 147 (220)
Q Consensus 86 ~~D~liipGG~~-~~~~--~~~~~l~~~l~~~~~~g~~-i~aic~G~~-~La~aglL~g~~~T~~~~ 147 (220)
++|+|||.=|.| ..++ .+++.+.+.| ++...| |.+|++=.- -| +.+...+++.|...
T Consensus 187 ~~dviii~RGGGs~eDL~~Fn~e~~~rai---~~~~~Pvis~iGHe~D~ti--~D~vAd~ra~TPta 248 (432)
T TIGR00237 187 ECDVLIVGRGGGSLEDLWSFNDEKVARAI---FLSKIPIISAVGHETDFTI--SDFVADLRAPTPSA 248 (432)
T ss_pred CCCEEEEecCCCCHHHhhhcCcHHHHHHH---HcCCCCEEEecCcCCCccH--HHHhhhccCCCcHH
Confidence 589999984444 3443 3556665555 555566 555665441 11 13445555555443
No 288
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=27.77 E-value=2.7e+02 Score=20.96 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKS 47 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~ 47 (220)
.++|.||=...|. .--..+.+.|...|..|.+-|.+..|
T Consensus 57 ~~~vLVLGTgEfM-y~Pl~lA~~Le~~g~~V~~qSTTRSP 95 (155)
T PF12500_consen 57 GERVLVLGTGEFM-YLPLLLAEELEQAGADVRYQSTTRSP 95 (155)
T ss_pred CCcEEEEccchHH-HHHHHHHHHHHhcCCceEEeCCCCCC
Confidence 4678888776653 33344567788888899998888765
No 289
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=27.70 E-value=1.6e+02 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=26.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+.|.|+-.||....+ +..++...+.+|.++..|.+-.
T Consensus 84 ~r~d~IIaiGGGsv~D------~ak~vA~~~~rgip~i~VPTT~ 121 (345)
T cd08195 84 DRKSLIIALGGGVVGD------LAGFVAATYMRGIDFIQIPTTL 121 (345)
T ss_pred CCCCeEEEECChHHHh------HHHHHHHHHhcCCCeEEcchhH
Confidence 3568999888865433 3355555667899999998864
No 290
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=27.66 E-value=1.5e+02 Score=23.72 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=52.8
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
++|.|.-.+ .......+.|+.+|+++..+..-. ...... -...+.++. .||
T Consensus 2 ~~vlvtR~~----~~~~~~~~~l~~~G~~~~~~P~i~---------------------~~~~~~--l~~~l~~l~--~~d 52 (248)
T COG1587 2 MRVLVTRPR----EQAEELAALLRKAGAEPLELPLIE---------------------IEPLPD--LEVALEDLD--SAD 52 (248)
T ss_pred cEEEEeCch----hhhHHHHHHHHhCCCcceeeccee---------------------eecchh--HHHHHhccc--cCC
Confidence 466666555 245666778999998766553211 000000 122344443 499
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH-HHHhCccc
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAAADVV 137 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~-~La~aglL 137 (220)
+|++....+...+ .+.+...-.. .-.++.+++++..+. .|.+.|+.
T Consensus 53 ~vvfTS~~av~~~--~~~l~~~~~~-~~~~~~i~aVG~~Ta~~l~~~G~~ 99 (248)
T COG1587 53 WVVFTSPNAVRFF--FEALKEQGLD-ALKNKKIAAVGEKTAEALRKLGIK 99 (248)
T ss_pred EEEEECHHHHHHH--HHHHHhhccc-ccccCeEEEEcHHHHHHHHHhCCC
Confidence 9999886654432 1111111111 234688999998885 55565643
No 291
>COG3233 Predicted deacetylase [General function prediction only]
Probab=27.62 E-value=1.3e+02 Score=24.09 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.5
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEE
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIAS 123 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~a 123 (220)
.++||--.+-..+..++++.+||.+..++|-.++-
T Consensus 38 lLViPn~~~~~~l~~d~rf~~~l~~r~e~Gdel~l 72 (233)
T COG3233 38 LLVIPNHANDYPLSKDPRFVDLLTEREEEGDELVL 72 (233)
T ss_pred EEEeeccCCCCCcccChHHHHHHHHHHhcCCEEEE
Confidence 58888765544477899999999999999876653
No 292
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=27.58 E-value=2.7e+02 Score=23.33 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEEEcCCEEeCCCCCC
Q 027708 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 182 (220)
Q Consensus 103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s 182 (220)
+.+++.+.++...+++.++..++.|+-+|..-+=++|--+..... + ..+..+++.+++++...
T Consensus 44 ~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~gvVI~l~~~----~-------------~~i~~~~~~v~v~AG~~ 106 (302)
T PRK14652 44 DPDALSALLRAVRELGVPLSILGGGANTLVADAGVRGVVLRLPQD----F-------------PGESTDGGRLVLGAGAP 106 (302)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEeeEEEEecCC----c-------------ceEEecCCEEEEECCCc
Confidence 345777888877788999999999997764332222221111000 0 01344567888888888
Q ss_pred HHHHHHHHHH
Q 027708 183 HPEFIRLFLK 192 (220)
Q Consensus 183 ~~~~~~~li~ 192 (220)
..++...+.+
T Consensus 107 ~~~L~~~~~~ 116 (302)
T PRK14652 107 ISRLPARAHA 116 (302)
T ss_pred HHHHHHHHHH
Confidence 8888888776
No 293
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=27.46 E-value=1.2e+02 Score=26.72 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
++|+|+-.=..-..|+....+.+.+.|.++.++...
T Consensus 2 ~tI~iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg 37 (403)
T PF06792_consen 2 KTIAIIGTLDTKGEELLYLRDQIEAQGVEVLLIDVG 37 (403)
T ss_pred CEEEEEEccCCCHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 589999988888999999999999999988777553
No 294
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=27.42 E-value=1.3e+02 Score=20.69 Aligned_cols=33 Identities=18% Similarity=-0.009 Sum_probs=23.5
Q ss_pred EEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC
Q 027708 12 LLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 12 ~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~ 44 (220)
+.....+............|+.+|+++......
T Consensus 4 ~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 4 GATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 333445556677777888899999998887553
No 295
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=27.34 E-value=1.1e+02 Score=27.49 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=21.7
Q ss_pred CCeEEEEecC--CC-Cchhh-H-HHHHHHHhCCCeEEEEcCC
Q 027708 8 KRSVLLLCGD--YM-EDYEA-M-VPFQALLAFGVSVDAACPG 44 (220)
Q Consensus 8 ~~kI~il~~~--g~-~~~e~-~-~~~~~l~~ag~~v~~~s~~ 44 (220)
+||+.||+-| |- ..... . .....|+.+|+++.+.-.+
T Consensus 111 ~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~ 152 (481)
T PLN02958 111 PKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK 152 (481)
T ss_pred CcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4788887755 21 11222 2 2445888899887766443
No 296
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.89 E-value=86 Score=26.07 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFG 35 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag 35 (220)
.++++++.-..++..++....+.|+...
T Consensus 153 ~~~v~vvsQTT~~~~~~~~i~~~l~~~~ 180 (280)
T TIGR00216 153 EDLLGVVSQTTLSQEDTKEIVAELKARV 180 (280)
T ss_pred CCcEEEEEcCCCcHHHHHHHHHHHHHhC
Confidence 3678888888888889999999887743
No 297
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.75 E-value=1.2e+02 Score=25.19 Aligned_cols=29 Identities=0% Similarity=-0.227 Sum_probs=23.2
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCe
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS 37 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~ 37 (220)
++++++.-..++..++....+.|+...-+
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~ 185 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKE 185 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCcc
Confidence 67888888888888999999988875433
No 298
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.62 E-value=1.1e+02 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=22.0
Q ss_pred eEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 10 kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
||+|++.+ .|...-..+..+.+++.|+.+.+...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 37 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGP 37 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 68998854 22223345566777788998877643
No 299
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.45 E-value=1.6e+02 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+=|++|+..+.| +++.+.+.++.+.++|.++.++...
T Consensus 108 ~~gDvli~iS~SG-----~s~~v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 108 HAGDVLLAISTRG-----NSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678888877655 4778999999999999999999864
No 300
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.82 E-value=1.6e+02 Score=22.78 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=30.0
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
+=|++|+.+..| .++.+++.++.+.++|.++.+|+.
T Consensus 111 ~~Dv~i~iS~sG-----~t~~~~~~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 111 PGDVLLAISTSG-----NSANVIQAIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEEC
Confidence 568888877544 477899999999999999999986
No 301
>PRK13059 putative lipid kinase; Reviewed
Probab=25.58 E-value=1.2e+02 Score=25.12 Aligned_cols=35 Identities=14% Similarity=-0.035 Sum_probs=21.7
Q ss_pred CeEEEEecCCCC----chhhHHHHHHHHhCCCeEEEEcC
Q 027708 9 RSVLLLCGDYME----DYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~g~~----~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+|+.+++-|..- ..++......|+..|+++.+...
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~ 40 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRI 40 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEc
Confidence 577777654211 23344567788899988765544
No 302
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=25.14 E-value=69 Score=26.50 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccCCh
Q 027708 26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 105 (220)
Q Consensus 26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~~~ 105 (220)
...--|..+|++|....|..+-.++..| ....+.|..++.|.. +.+...+..+||-|=|.. .-
T Consensus 35 ~mAiefAeAGHDVVLaePn~d~~dd~~w----------~~vedAGV~vv~dD~-eaa~~~Ei~VLFTPFGk~------T~ 97 (340)
T COG4007 35 RMAIEFAEAGHDVVLAEPNRDIMDDEHW----------KRVEDAGVEVVSDDA-EAAEHGEIHVLFTPFGKA------TF 97 (340)
T ss_pred HHHHHHHHcCCcEEeecCCccccCHHHH----------HHHHhcCcEEecCch-hhhhcceEEEEecccchh------hH
Confidence 3444677899999988876542222222 234456776666532 223345777888876533 22
Q ss_pred HHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708 106 SVIDLVRKFSNSGKTIASICHGQLIL 131 (220)
Q Consensus 106 ~l~~~l~~~~~~g~~i~aic~G~~~L 131 (220)
.+.+-|.+....|..|+-.|+-+.+.
T Consensus 98 ~Iarei~~hvpEgAVicnTCT~sp~v 123 (340)
T COG4007 98 GIAREILEHVPEGAVICNTCTVSPVV 123 (340)
T ss_pred HHHHHHHhhCcCCcEecccccCchhH
Confidence 45566667778899999999987543
No 303
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=25.11 E-value=1.6e+02 Score=23.67 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=28.5
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
++.+.|+++|.|-.. .+....+..+.++..+-|.|.|+++
T Consensus 68 SPRhADvliVtG~VT----~km~~~L~rlyeqmPePK~VIA~Ga 107 (225)
T CHL00023 68 SPRQADLILTAGTVT----MKMAPSLVRLYEQMPEPKYVIAMGA 107 (225)
T ss_pred CcccceEEEEecCCc----cccHHHHHHHHHhcCCCCeEEEEcc
Confidence 356799999988533 2345666667777778899988854
No 304
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=25.06 E-value=2.4e+02 Score=23.80 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=24.6
Q ss_pred CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
.+.|.++| |..+.. .+.+.--...+..-+++.++|+.++|.
T Consensus 186 ~~vd~Viv-Gad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ae 229 (301)
T COG1184 186 SRVDKVLV-GADAILANGALVNKIGTSPLALAARELRVPFYVVAE 229 (301)
T ss_pred HhCCEEEE-CccceecCCcEEeccchHHHHHHHHHhCCCEEEEee
Confidence 36888888 443321 233333445555566778999997773
No 305
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=24.89 E-value=5.4e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEE
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIAS 123 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~a 123 (220)
++|+|+|.|-.. . -.+.....|.++..+|..+..
T Consensus 234 d~d~LvI~~P~~--~--ls~~e~~~Ldqfl~~GG~ll~ 267 (552)
T TIGR03521 234 KFDLIVIAKPTE--A--FSEREKYILDQYIMNGGKALF 267 (552)
T ss_pred CcCEEEEeCCCc--c--CCHHHHHHHHHHHHcCCeEEE
Confidence 799999987322 1 356777778888877766543
No 306
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.62 E-value=1.6e+02 Score=18.90 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEE
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAA 41 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~ 41 (220)
.+|.|+.++.-...+.......|+..|+.+.+-
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d 34 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVD 34 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEE
Confidence 578888877655667777888999999988663
No 307
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.59 E-value=1.1e+02 Score=25.19 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=26.5
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
++|++|+.||.| .++...+.+...+.||.+|-.|.
T Consensus 42 ~~d~vi~iGGDG--------T~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 42 RAQLAIVIGGDG--------NMLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhccCCCcEEEEeCCC
Confidence 589999999855 44555666666788999888775
No 308
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=24.54 E-value=2e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEE
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAA 41 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~ 41 (220)
+|+|.|+-.-.....|+....+..+++|..+..+
T Consensus 2 ~krIyVvgT~DTKg~EL~ylad~I~~aG~~~v~v 35 (401)
T COG5441 2 MKRIYVVGTADTKGEELAYLADLIEAAGGSPVLV 35 (401)
T ss_pred CceEEEEecCCCcchhHHHHHHHHHHcCCCeEEE
Confidence 3699999998889999999999999999765554
No 309
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=24.25 E-value=1.5e+02 Score=24.24 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=24.5
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
+.++|+++|-|.... .....+.-+.+...+-|.|.|+++
T Consensus 69 PRhADIlLVtG~VT~----km~~~L~rlyeqmP~PK~VIAvGa 107 (264)
T PRK14819 69 PRQADLMIVAGTVTK----KMAPQVVRLYNQMPEPRYVISMGA 107 (264)
T ss_pred CCcceEEEEecCCch----hhHHHHHHHHHhccCCCeEEEEcc
Confidence 457999999986442 222333344445567888888854
No 310
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=24.13 E-value=1.5e+02 Score=21.66 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=37.8
Q ss_pred CCeEEEEecCCCCchhhHHHHHH-HHhCCCeEEEEcCC---CCCCCCCCcccccCCCcccccccccCccccc--CcCcCC
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQA-LLAFGVSVDAACPG---KKSGDVCPTAVHQSTGHQQTYSETRGHNFAL--NATFDE 81 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~-l~~ag~~v~~~s~~---~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~--~~~l~~ 81 (220)
++||+++..-+..-.-.+..+.- +...++++..++.. +.+.++... .+....|+.+.. ...+.+
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~----------~vl~e~Gid~~~~~~k~i~~ 71 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAV----------EVLAEHGIDISGHRSKQLTE 71 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHH----------HHHHHcCCCcCCccCccCch
Confidence 36999999877665444432211 11134555544431 111221111 233345555442 234555
Q ss_pred CCCCCccEEEEcC
Q 027708 82 IDPTKYDGLVIPG 94 (220)
Q Consensus 82 ~~~~~~D~liipG 94 (220)
....+||+||.-+
T Consensus 72 ~~~~~~DlIitmd 84 (139)
T COG0394 72 EDFDEFDLIITMD 84 (139)
T ss_pred hhhhhCCEEEEeC
Confidence 4456788888765
No 311
>PRK15482 transcriptional regulator MurR; Provisional
Probab=23.65 E-value=1.7e+02 Score=23.94 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=30.8
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+-|++|+.+..+ ..+.+.+.++.+.++|.+|.+|+...
T Consensus 182 ~~Dv~i~iS~sg-----~t~~~~~~~~~a~~~g~~iI~IT~~~ 219 (285)
T PRK15482 182 KGDVQIAISYSG-----SKKEIVLCAEAARKQGATVIAITSLA 219 (285)
T ss_pred CCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 458888877544 57789999999999999999999643
No 312
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=23.60 E-value=4.1e+02 Score=22.64 Aligned_cols=93 Identities=8% Similarity=0.027 Sum_probs=47.8
Q ss_pred CCCCCCCCCeEEEEecCCCCchhhHHHHHHHHhCC---CeEEEEcCCCCCCCCCCcccccCCCccccccccc-CcccccC
Q 027708 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR-GHNFALN 76 (220)
Q Consensus 1 ~~~~~~~~~kI~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~i~~~ 76 (220)
|+.| +||+|+=..|+...|+.-. |...+ .++..++.....+. ++.... .+.+...
T Consensus 1 m~~~----~~IaIvGATG~vG~eLlrl---L~~~~hP~~~l~~v~s~~~aG~--------------~l~~~~~~l~~~~~ 59 (336)
T PRK05671 1 MSQP----LDIAVVGATGTVGEALVQI---LEERDFPVGTLHLLASSESAGH--------------SVPFAGKNLRVREV 59 (336)
T ss_pred CCCC----CEEEEEccCCHHHHHHHHH---HhhCCCCceEEEEEECcccCCC--------------eeccCCcceEEeeC
Confidence 5555 4999999999887777664 44333 33333332211111 111110 1122211
Q ss_pred cCcCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEe
Q 027708 77 ATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 125 (220)
Q Consensus 77 ~~l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic 125 (220)
.. .+ ..+.|++|++.+++ ...+|+.++.++|..|.-..
T Consensus 60 ~~-~~--~~~vD~vFla~p~~--------~s~~~v~~~~~~G~~VIDlS 97 (336)
T PRK05671 60 DS-FD--FSQVQLAFFAAGAA--------VSRSFAEKARAAGCSVIDLS 97 (336)
T ss_pred Ch-HH--hcCCCEEEEcCCHH--------HHHHHHHHHHHCCCeEEECc
Confidence 11 11 24689999976533 33457777777777655443
No 313
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=23.44 E-value=1.9e+02 Score=23.35 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=22.8
Q ss_pred CCeEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 8 KRSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 8 ~~kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+++|++++.+ .|...-+.+....+++.|+++.+...
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~ 64 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 5789988853 22233344556667778998877543
No 314
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.40 E-value=3.3e+02 Score=23.44 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=45.9
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEec
Q 027708 90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 161 (220)
Q Consensus 90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~ 161 (220)
++-.||..|. -|..+...++.....+.-|.++-.|. .||++|.-....|.....+...|+...-
T Consensus 7 IlTSGGdaPG---mNa~Iravvr~a~~~g~eV~Gi~~Gy-----~GL~~~~i~~l~~~~v~~~~~~GGT~lg 70 (347)
T COG0205 7 ILTSGGDAPG---MNAVIRAVVRTAIKEGLEVFGIYNGY-----LGLLEGDIKPLTREDVDDLINRGGTFLG 70 (347)
T ss_pred EEccCCCCcc---HHHHHHHHHHHHHHcCCEEEEEecch-----hhhcCCcceeccccchhHHHhcCCeEEe
Confidence 4455665543 47888899999999999999999998 5788886655666665666665554443
No 315
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=23.23 E-value=76 Score=26.21 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=27.6
Q ss_pred CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
..++|++++.||.| .++...+.+...+.||.+|-.|.
T Consensus 74 ~~~~D~ii~lGGDG--------T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDG--------TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHH--------HHHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCH--------HHHHHHHHhccCCCcEEeecCCC
Confidence 35899999999854 45556666666789999999876
No 316
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=23.07 E-value=1.7e+02 Score=26.24 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHhCCCeEEEEc-CCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC--CCCccEEEEcCCCC
Q 027708 22 YEAMVPFQALLAFGVSVDAAC-PGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID--PTKYDGLVIPGGRA 97 (220)
Q Consensus 22 ~e~~~~~~~l~~ag~~v~~~s-~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~--~~~~D~liipGG~~ 97 (220)
..+....+.|++.|.+|++.= |-.+. .-++.|..--+.+..+..-...++++ .++.|+.+|.|-.+
T Consensus 324 h~v~el~~~L~~~Gv~V~faIHPVAGR----------MPGHMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGAND 392 (462)
T PRK09444 324 YPVAEITEKLRARGINVRFGIHPVAGR----------LPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND 392 (462)
T ss_pred HHHHHHHHHHHHCCCeEEEEecccccc----------CCCcceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCcc
Confidence 577788889999999887741 11110 01122233333444443333334443 35899999999765
No 317
>PRK00549 competence damage-inducible protein A; Provisional
Probab=22.95 E-value=1.3e+02 Score=26.39 Aligned_cols=83 Identities=11% Similarity=0.213 Sum_probs=49.4
Q ss_pred eEEEEec-C-----CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708 10 SVLLLCG-D-----YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID 83 (220)
Q Consensus 10 kI~il~~-~-----g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~ 83 (220)
|++|+.. + .........+...|...|+++.....-++..+ . +. ..+...
T Consensus 2 ~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~--------------~--------I~--~~l~~a- 56 (414)
T PRK00549 2 KAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPE--------------R--------LL--SALEIA- 56 (414)
T ss_pred EEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHH--------------H--------HH--HHHHHh-
Confidence 6777664 2 22345566777788889987765443221100 0 11 012221
Q ss_pred CCCccEEEEcCCCCcc--c-------------ccCChHHHHHHHHHHhC
Q 027708 84 PTKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNS 117 (220)
Q Consensus 84 ~~~~D~liipGG~~~~--~-------------~~~~~~l~~~l~~~~~~ 117 (220)
..++|+||+.||.++. + +..++...++|++++++
T Consensus 57 ~~~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~ 105 (414)
T PRK00549 57 EERSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEEALAKIEDYFAK 105 (414)
T ss_pred ccCCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 2479999999997642 1 24688999999988864
No 318
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=22.87 E-value=2.2e+02 Score=24.07 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=41.8
Q ss_pred EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCC
Q 027708 90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE 163 (220)
Q Consensus 90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~ 163 (220)
|+-.||..|- -|..+...++...+++..|.++-.|-. ||+++.-....|.........|+...-.+
T Consensus 5 IltsGG~apG---mNa~i~~vv~~a~~~g~~v~G~~~G~~-----GL~~~~~~~l~~~~v~~~~~~gGt~Lgts 70 (317)
T cd00763 5 VLTSGGDAPG---MNAAIRGVVRSAIAEGLEVYGIRDGYA-----GLIAGDIVPLDRYSVSDIINRGGTFLGSA 70 (317)
T ss_pred EEccCCCcHH---HHHHHHHHHHHHHHCCCEEEEEecCHH-----HhcCCCeEeCCHHHhhhHHhCCCeeeccC
Confidence 4445665543 377888888888888889999999984 55666555444443333344455544433
No 319
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.76 E-value=1.5e+02 Score=24.41 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=26.1
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHh--CCCeEEEEehHHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 129 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~g~~i~aic~G~~ 129 (220)
++|.+|+.||.| .++..++.+.. .+.||.+|-.|..
T Consensus 35 ~~Dlvi~iGGDG--------T~L~a~~~~~~~~~~iPilGIN~G~l 72 (265)
T PRK04885 35 NPDIVISVGGDG--------TLLSAFHRYENQLDKVRFVGVHTGHL 72 (265)
T ss_pred CCCEEEEECCcH--------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence 579999999855 44455566555 5888888888764
No 320
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.75 E-value=2.5e+02 Score=23.32 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEEEcCCEEeCCCCCC
Q 027708 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 182 (220)
Q Consensus 103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s 182 (220)
..+++.+.++...+++.++..++.|+-++...+-++|.-+..... ...+..+++.+|+++...
T Consensus 39 s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~gvvI~l~~~-----------------l~~i~~~~~~v~v~aG~~ 101 (298)
T PRK13905 39 DIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIRGVVIRLGKG-----------------LNEIEVEGNRITAGAGAP 101 (298)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcceEEEEecCC-----------------cceEEecCCEEEEECCCc
Confidence 446788888888888999999999986553322122222221100 001233556788777777
Q ss_pred HHHHHHHHHHH
Q 027708 183 HPEFIRLFLKA 193 (220)
Q Consensus 183 ~~~~~~~li~~ 193 (220)
..++...+.+.
T Consensus 102 ~~~L~~~l~~~ 112 (298)
T PRK13905 102 LIKLARFAAEA 112 (298)
T ss_pred HHHHHHHHHHc
Confidence 77888877763
No 321
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=22.57 E-value=1.7e+02 Score=23.42 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=31.1
Q ss_pred CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
+-|++|+..-.+ .++.+.+.++.+.++|.++.+++...
T Consensus 47 ~~d~~i~iS~sG-----~t~~~~~~~~~a~~~g~~ii~iT~~~ 84 (268)
T TIGR00393 47 PNDVVLMISYSG-----ESLELLNLIPHLKRLSHKIIAFTGSP 84 (268)
T ss_pred CCCEEEEEeCCC-----CCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 568888876444 57899999999999999999999753
No 322
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=22.43 E-value=3.8e+02 Score=21.72 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=30.0
Q ss_pred eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCC
Q 027708 10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKK 46 (220)
Q Consensus 10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~ 46 (220)
||+|-==||+...-+..+.+.|+..| +|.++.|...
T Consensus 2 ~ILltNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 2 KILLTNDDGIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred eEEEECCCCCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 56655568999999999999999988 8989988653
No 323
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.22 E-value=55 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=14.2
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCC
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSG 118 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g 118 (220)
-|+|+||.... +...+.+-|.+..++-
T Consensus 5 rVli~GgR~~~---D~~~i~~~Ld~~~~~~ 31 (71)
T PF10686_consen 5 RVLITGGRDWT---DHELIWAALDKVHARH 31 (71)
T ss_pred EEEEEECCccc---cHHHHHHHHHHHHHhC
Confidence 46778876532 3344445555444433
No 324
>PRK07308 flavodoxin; Validated
Probab=22.19 E-value=3.1e+02 Score=19.74 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCccEEEEcCCC-CcccccCChHHHHHHHH---HHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGR-APEYLAMNDSVIDLVRK---FSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~---~~~~g~~i~aic~G 127 (220)
.++|.|++.... +...+ .+...+|+.. ..-+++.++.++.|
T Consensus 47 ~~~d~vi~g~~t~g~G~~--p~~~~~fl~~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 47 EDADIAIVATYTYGDGEL--PDEIVDFYEDLADLDLSGKIYGVVGSG 91 (146)
T ss_pred ccCCEEEEEeCccCCCCC--CHHHHHHHHHHhcCCCCCCEEEEEeeC
Confidence 368888884332 21222 2234455444 33357888777775
No 325
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=22.10 E-value=53 Score=29.02 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=12.6
Q ss_pred CCCCCCCccEEEEcCCC
Q 027708 80 DEIDPTKYDGLVIPGGR 96 (220)
Q Consensus 80 ~~~~~~~~D~liipGG~ 96 (220)
...+...||+||+.||+
T Consensus 30 ~~~~~~~~dVvIvGgGp 46 (481)
T KOG3855|consen 30 KSTDTAKYDVVIVGGGP 46 (481)
T ss_pred ccCCcccCCEEEECCch
Confidence 33344589999998886
No 326
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=21.98 E-value=1.5e+02 Score=22.43 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=16.9
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEE
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDA 40 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~ 40 (220)
++|++++.-+ .+.+.....+.+...|..|.+
T Consensus 41 ~~I~~y~~~~-~Ev~t~~li~~~~~~gk~v~l 71 (186)
T PF01812_consen 41 QTIALYLPMG-GEVDTRPLIERALKDGKRVYL 71 (186)
T ss_dssp SEEEE----T-TS---HHHHHHHHHTTCEEEE
T ss_pred ceEEEccCCC-CCCCHHHHHHHHHHcCCeEec
Confidence 6788887754 456777777777788876544
No 327
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=21.80 E-value=4.6e+02 Score=22.52 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=22.7
Q ss_pred CCCCCCCCCeEEEEecCCCCchhhHHHHHHHH-hCCCe
Q 027708 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALL-AFGVS 37 (220)
Q Consensus 1 ~~~~~~~~~kI~il~~~g~~~~e~~~~~~~l~-~ag~~ 37 (220)
|++.. .||+|+=..|+...|+.. .|. ...+.
T Consensus 1 ~~~~~---~~VaIvGATG~vG~ell~---lL~~h~~f~ 32 (347)
T PRK06728 1 MSEKG---YHVAVVGATGAVGQKIIE---LLEKETKFN 32 (347)
T ss_pred CCCCC---CEEEEEeCCCHHHHHHHH---HHHHCCCCC
Confidence 55554 799999999998777765 666 35666
No 328
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.77 E-value=2.2e+02 Score=22.81 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=21.9
Q ss_pred CeEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 9 RSVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
|+|++++.+ .|...-+.+..+.++..|+++.+...
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~ 38 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDG 38 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECC
Confidence 478988864 22223334555777778998876543
No 329
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.68 E-value=1.7e+02 Score=23.06 Aligned_cols=32 Identities=6% Similarity=-0.337 Sum_probs=19.7
Q ss_pred EEEEecC---CCCchhhHHHHHHHHhCCCeEEEEc
Q 027708 11 VLLLCGD---YMEDYEAMVPFQALLAFGVSVDAAC 42 (220)
Q Consensus 11 I~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s 42 (220)
|++++.+ .|...-+.+..+.++..|+++.+..
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~ 36 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVNLIVSI 36 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEec
Confidence 6666654 2333344566667777888886653
No 330
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.45 E-value=1.6e+02 Score=23.28 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=20.0
Q ss_pred eEEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 10 SVLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 10 kI~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
+|+|++.+ .|...-..+..+.++..|+++.+...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 37 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSA 37 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhcCCeEEEecC
Confidence 47787754 23333344555666677888766543
No 331
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=21.31 E-value=2.1e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=30.0
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+-|++|+....| ..+.++..++.+.++|.++.++|.-
T Consensus 117 ~~~DvvI~IS~SG-----~T~~vi~al~~Ak~~Ga~~I~It~~ 154 (257)
T cd05007 117 TERDVVIGIAASG-----RTPYVLGALRYARARGALTIGIACN 154 (257)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678887776544 5778999999999999999999843
No 332
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.17 E-value=1.9e+02 Score=24.08 Aligned_cols=39 Identities=3% Similarity=0.031 Sum_probs=31.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+-|++|+....| ..+.+++.++.+.++|.++.+++...
T Consensus 88 ~~~d~~i~iS~sG-----~t~~~~~~~~~ak~~g~~vI~iT~~~ 126 (321)
T PRK11543 88 ESRDVMLFISYSG-----GAKELDLIIPRLEDKSIALLAMTGKP 126 (321)
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3568888887544 57789999999999999999999843
No 333
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=20.99 E-value=2.1e+02 Score=24.21 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=25.3
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+.|.|+-.||....+ +.+++...+.++.++.+|-+-.
T Consensus 80 ~r~d~IIavGGGsv~D------~aK~iA~~~~~~~p~i~VPTT~ 117 (344)
T TIGR01357 80 DRSSTIIALGGGVVGD------LAGFVAATYMRGIRFIQVPTTL 117 (344)
T ss_pred CCCCEEEEEcChHHHH------HHHHHHHHHccCCCEEEecCch
Confidence 3569999888865432 2244444456789999998853
No 334
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.98 E-value=4.8e+02 Score=21.48 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCCCccEEEEcCCCCcccccCChHHHHHHHHHH-hCCCeEEEEehH
Q 027708 83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS-NSGKTIASICHG 127 (220)
Q Consensus 83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~-~~g~~i~aic~G 127 (220)
.....|.||+.|-.|+..-.-+++-..-|+++. +.|.++..--.|
T Consensus 185 ~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 185 DLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred cCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 345789999865344433234555444444444 467777777766
No 335
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.98 E-value=3e+02 Score=19.19 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=43.7
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD 88 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D 88 (220)
|+|+|+=...-...=-...+..|.+.|+++..+.++.+ .+ .|.. .-.++.+. +...|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~-----------------~i---~G~~--~y~sl~e~-p~~iD 57 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG-----------------EI---LGIK--CYPSLAEI-PEPID 57 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS-----------------EE---TTEE---BSSGGGC-SST-S
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce-----------------EE---CcEE--eeccccCC-CCCCC
Confidence 46777764322111223456667778999988888653 11 2222 22234442 46788
Q ss_pred EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
+++|.- ......+++++..+.|..-+-+..|
T Consensus 58 lavv~~--------~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 58 LAVVCV--------PPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp EEEE-S---------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred EEEEEc--------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 888853 2345667777777666554444444
No 336
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=20.94 E-value=2.5e+02 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHh-CCCeEEEEcC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACP 43 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~ 43 (220)
+++.|++.||....+.....+.++. .|..+..++.
T Consensus 104 ~~~villTDG~~~~~~~~~~~~l~~~~~v~v~~vg~ 139 (163)
T cd01476 104 PKVVVVLTDGRSHDDPEKQARILRAVPNIETFAVGT 139 (163)
T ss_pred CeEEEEECCCCCCCchHHHHHHHhhcCCCEEEEEEC
Confidence 4889999999876666667778888 6766666654
No 337
>PRK02947 hypothetical protein; Provisional
Probab=20.90 E-value=2.1e+02 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G 127 (220)
.+-|++|+....+ .++.+++.++.+.++|.++.+|+.-
T Consensus 105 ~~~Dv~i~iS~sG-----~t~~~i~~~~~a~~~g~~vI~iT~~ 142 (246)
T PRK02947 105 RPGDVLIVVSNSG-----RNPVPIEMALEAKERGAKVIAVTSL 142 (246)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678888876544 5778999999999999999999854
No 338
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=20.73 E-value=5e+02 Score=21.79 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEEE--cCCEEeCCCC
Q 027708 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV--DGNIITGATY 180 (220)
Q Consensus 103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~--dg~iiTs~g~ 180 (220)
+..++.+.++.....+-|+.-++.|+-+|-.-+-++|--...-... .... ++..+++++.
T Consensus 29 ~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~------------------~~~~~~~~~~i~a~aG 90 (291)
T COG0812 29 DIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIGGVVIKLGKLN------------------FIEIEGDDGLIEAGAG 90 (291)
T ss_pred CHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCceEEEEccccc------------------ceeeeccCCeEEEccC
Confidence 3478999999999899999999999987766654544222211100 1222 2338898888
Q ss_pred CCHHHHHHHHHHH-Hcc
Q 027708 181 EGHPEFIRLFLKA-LGG 196 (220)
Q Consensus 181 ~s~~~~~~~li~~-l~~ 196 (220)
....+++...++. +.|
T Consensus 91 ~~~~~l~~~~~~~gl~G 107 (291)
T COG0812 91 APWHDLVRFALENGLSG 107 (291)
T ss_pred CcHHHHHHHHHHcCCcc
Confidence 8999998888863 443
No 339
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.65 E-value=5.3e+02 Score=24.87 Aligned_cols=34 Identities=21% Similarity=0.033 Sum_probs=23.9
Q ss_pred CCCCCCCCCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEE
Q 027708 1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAA 41 (220)
Q Consensus 1 ~~~~~~~~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~ 41 (220)
||+|+ +|.|+=.-+ ...+.+...|...|++|...
T Consensus 1 ~~~~~----~i~viG~G~---sG~salA~~L~~~G~~V~~s 34 (809)
T PRK14573 1 MMKSL----FYHFIGIGG---IGMSALAHILLDRGYSVSGS 34 (809)
T ss_pred CCCcc----eEEEEEecH---HhHHHHHHHHHHCCCeEEEE
Confidence 66665 777665544 35666677899999998654
No 340
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.64 E-value=1.9e+02 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=28.7
Q ss_pred CCeEEEEecCCCCchhhHHHHHHHHhCCCeE
Q 027708 8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSV 38 (220)
Q Consensus 8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v 38 (220)
.++|+|+..|+....++....+.|..+|..+
T Consensus 83 g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v 113 (308)
T PF11382_consen 83 GRSVAVVTLPGADDEDVDAVRELLEQAGATV 113 (308)
T ss_pred CCEEEEEEcCCCChHHHHHHHHHHHHCCCeE
Confidence 5899999999999999999999999999765
No 341
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.63 E-value=2.8e+02 Score=23.21 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=47.6
Q ss_pred ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708 87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA 166 (220)
Q Consensus 87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~ 166 (220)
.|+++.|. ..+++.+.++-..+++.++..++.|+-++..-+=++|--+... . +.
T Consensus 37 a~~vv~p~--------~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~GvvI~l~-~----l~------------- 90 (305)
T PRK12436 37 ADVFVAPT--------NYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIRGITVSLI-H----IT------------- 90 (305)
T ss_pred EEEEEecC--------CHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCeeEEEEEeC-C----cC-------------
Confidence 55666654 3456777777777889999999999977633222222211110 0 00
Q ss_pred eEEEcCCEEeCCCCCCHHHHHHHHHHH
Q 027708 167 ACVVDGNIITGATYEGHPEFIRLFLKA 193 (220)
Q Consensus 167 ~~v~dg~iiTs~g~~s~~~~~~~li~~ 193 (220)
.+..+++.+|+.+.....++...+.+.
T Consensus 91 ~i~~~~~~v~v~aG~~~~~L~~~~~~~ 117 (305)
T PRK12436 91 GVTVTGTTIVAQCGAAIIDVSRIALDH 117 (305)
T ss_pred cEEEeCCEEEEEeCCcHHHHHHHHHHc
Confidence 133345567776666777777766654
No 342
>PRK07116 flavodoxin; Provisional
Probab=20.59 E-value=1.3e+02 Score=22.34 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~ 126 (220)
.+||.|++.. +-.. -...+.+..||++..-.+|+++.+|+
T Consensus 75 ~~~D~Iiig~-Pv~~-~~~p~~v~~fl~~~~l~~k~v~~f~T 114 (160)
T PRK07116 75 AEYDVIFLGF-PIWW-YVAPRIINTFLESYDFSGKTVIPFAT 114 (160)
T ss_pred HhCCEEEEEC-Chhc-cccHHHHHHHHHhcCCCCCEEEEEEe
Confidence 4799988844 2211 12355788899877667888888876
No 343
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.48 E-value=2.8e+02 Score=21.82 Aligned_cols=33 Identities=24% Similarity=0.050 Sum_probs=21.0
Q ss_pred EEEEecC---CCCchhhHHHHHHHHhCCCeEEEEcC
Q 027708 11 VLLLCGD---YMEDYEAMVPFQALLAFGVSVDAACP 43 (220)
Q Consensus 11 I~il~~~---g~~~~e~~~~~~~l~~ag~~v~~~s~ 43 (220)
|++++.+ .+...=+.+..+.++..|+++.+...
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGYTVLLCNT 37 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 6777753 23333445677777788998876544
No 344
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.35 E-value=1.6e+02 Score=25.41 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.4
Q ss_pred CCccEEEEcCCCCc
Q 027708 85 TKYDGLVIPGGRAP 98 (220)
Q Consensus 85 ~~~D~liipGG~~~ 98 (220)
.++|.||-.||..+
T Consensus 85 ~~~D~IiaiGGGSv 98 (379)
T TIGR02638 85 SGADYLIAIGGGSP 98 (379)
T ss_pred cCCCEEEEeCChHH
Confidence 36899998887654
No 345
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=20.31 E-value=4.8e+02 Score=21.77 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708 85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128 (220)
Q Consensus 85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~ 128 (220)
.+.|.||-.||.... ++.+++...+.++.++.+|-+-+
T Consensus 77 ~~~d~IIaiGGGs~~------D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 77 AEVDAVIAVGGGSTL------DTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred cCcCEEEEeCCchHH------HHHHHHHHHhcCCCCEEEEeCCC
Confidence 468999988885543 23344444455688888887643
No 346
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.30 E-value=2.8e+02 Score=23.13 Aligned_cols=77 Identities=10% Similarity=-0.019 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEEEcCC--EEeCCCC
Q 027708 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATY 180 (220)
Q Consensus 103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~dg~--iiTs~g~ 180 (220)
..+++.+.++...+++.++.-++.|+-+|...+-++|--+...... + .+..+++ .+++++.
T Consensus 29 ~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~---~--------------~i~~~~~~~~v~v~AG 91 (295)
T PRK14649 29 TPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFDGLVARYRGQR---W--------------ELHEHGDTAEVWVEAG 91 (295)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcCeEEEEecCCC---c--------------EEEEeCCcEEEEEEcC
Confidence 4467888888888889999999999988877665665443321100 0 0233333 7888777
Q ss_pred CCHHHHHHHHHHH-Hcc
Q 027708 181 EGHPEFIRLFLKA-LGG 196 (220)
Q Consensus 181 ~s~~~~~~~li~~-l~~ 196 (220)
....++....++. +.|
T Consensus 92 ~~~~~l~~~~~~~GL~G 108 (295)
T PRK14649 92 APMAGTARRLAAQGWAG 108 (295)
T ss_pred CcHHHHHHHHHHcCCcc
Confidence 7888888887763 443
No 347
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.27 E-value=2.6e+02 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCchhhHHHHHHHHhCC--CeEEEEcCCCC
Q 027708 9 RSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKK 46 (220)
Q Consensus 9 ~kI~il~~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~ 46 (220)
++|+|+.-...+..-.-...++|...| |++.++|-++.
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRT 42 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRT 42 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCC
Confidence 489999987766666677888898887 67788887664
No 348
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=20.18 E-value=65 Score=20.01 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=11.0
Q ss_pred CCCeEEEEehHHH
Q 027708 117 SGKTIASICHGQL 129 (220)
Q Consensus 117 ~g~~i~aic~G~~ 129 (220)
+++.++++|+|-.
T Consensus 9 ~~~~i~GVcaGlA 21 (61)
T PF04024_consen 9 DDRVIAGVCAGLA 21 (61)
T ss_pred CCCEEeeeHHHHH
Confidence 5799999999863
Done!