Query 027709
Match_columns 220
No_of_seqs 140 out of 205
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 00:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.4E-38 4.7E-43 231.9 5.5 62 125-186 2-64 (64)
2 1b9w_A Protein (merozoite surf 14.6 27 0.00091 27.0 -0.7 19 70-88 70-89 (95)
3 3hde_A Lysozyme; antimicrobial 10.6 1.3E+02 0.0044 23.9 2.1 25 126-150 137-161 (165)
4 2anv_A Lysozyme; direct method 10.5 95 0.0033 23.8 1.3 21 127-148 123-143 (146)
5 1xju_A Lysozyme; secreted inac 10.0 1.4E+02 0.0048 23.5 2.1 26 126-151 127-152 (163)
6 1xjt_A Lysozyme; open conforma 7.9 1.9E+02 0.0065 23.5 2.1 27 126-152 155-181 (191)
7 2xc7_A Phosphorylated adapter 7.3 42 0.0014 25.8 -1.9 17 171-187 60-76 (104)
8 2k2w_A Recombination and DNA r 6.9 1.3E+02 0.0045 23.8 0.7 13 125-137 17-29 (118)
9 3q12_A Pantoate--beta-alanine 6.9 1.2E+02 0.004 27.0 0.5 11 126-136 56-66 (287)
10 3mxt_A Pantothenate synthetase 6.8 1.2E+02 0.0041 26.9 0.5 11 126-136 55-65 (285)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.4e-38 Score=231.89 Aligned_cols=62 Identities=60% Similarity=1.007 Sum_probs=58.6
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHhhhhhh-hcCCCcccchhhHHHhhccCCCCCccccccc
Q 027709 125 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK 186 (220)
Q Consensus 125 eePvyVNaKQY~rIlRRRq~RaklE~~~kl~-k~rkpYLHESRH~HAm~R~RG~gGRFL~~k~ 186 (220)
|+|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 7999999999999999999999999999985 8899999999999999999999999999875
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=14.64 E-value=27 Score=27.02 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=16.1
Q ss_pred cccc-cCCCCCCCccccccc
Q 027709 70 MAPA-AYPYPDPYYRSIFAP 88 (220)
Q Consensus 70 ~a~~-~yPY~Dpyygg~~aa 88 (220)
|+|. ..||+.|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 6666 899999999999964
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=10.61 E-value=1.3e+02 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.2
Q ss_pred CceeechhhhHHHHHHHHHHHHHHh
Q 027709 126 EPVFVNAKQYHGILRRRQSRAKAES 150 (220)
Q Consensus 126 ePvyVNaKQY~rIlRRRq~RaklE~ 150 (220)
.-+|++-|...++.+||++...+=.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 3456677888999999998877644
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=10.45 E-value=95 Score=23.81 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=16.4
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 027709 127 PVFVNAKQYHGILRRRQSRAKA 148 (220)
Q Consensus 127 PvyVNaKQY~rIlRRRq~Rakl 148 (220)
-+|++-| ..++.+||++.+.|
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566677 88999999987765
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=10.04 E-value=1.4e+02 Score=23.50 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.5
Q ss_pred CceeechhhhHHHHHHHHHHHHHHhh
Q 027709 126 EPVFVNAKQYHGILRRRQSRAKAESE 151 (220)
Q Consensus 126 ePvyVNaKQY~rIlRRRq~RaklE~~ 151 (220)
.-++++-|...++.+||++.+.|=..
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~ 152 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLT 152 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhC
Confidence 35666778899999999998887654
No 6
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.91 E-value=1.9e+02 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=20.9
Q ss_pred CceeechhhhHHHHHHHHHHHHHHhhh
Q 027709 126 EPVFVNAKQYHGILRRRQSRAKAESEN 152 (220)
Q Consensus 126 ePvyVNaKQY~rIlRRRq~RaklE~~~ 152 (220)
.-+|++-|...++.+||++...|=..+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 456667788999999999988876543
No 7
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=7.28 E-value=42 Score=25.81 Aligned_cols=17 Identities=53% Similarity=0.565 Sum_probs=13.6
Q ss_pred hhccCCCCCcccccccc
Q 027709 171 LRRARGCGGRFLNSKKN 187 (220)
Q Consensus 171 m~R~RG~gGRFL~~k~~ 187 (220)
-.|.|-|||-||+-=+.
T Consensus 60 G~RrRTpGGVF~~LlK~ 76 (104)
T 2xc7_A 60 GSRRRTPGGVFLNLLKN 76 (104)
T ss_dssp SSSCCCHHHHHHHHHHH
T ss_pred CCcCCCCchhHHHHHhc
Confidence 36899999999976554
No 8
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=6.91 E-value=1.3e+02 Score=23.75 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=10.6
Q ss_pred CCceeechhhhHH
Q 027709 125 EEPVFVNAKQYHG 137 (220)
Q Consensus 125 eePvyVNaKQY~r 137 (220)
..=||.|+|||.+
T Consensus 17 KtFvFLn~KQ~kk 29 (118)
T 2k2w_A 17 KVFLFLNAKQYKK 29 (118)
T ss_dssp CEEEESCSSTHHH
T ss_pred CEEEEeCHHHHHH
Confidence 4578999999975
No 9
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=6.88 E-value=1.2e+02 Score=26.98 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.8
Q ss_pred CceeechhhhH
Q 027709 126 EPVFVNAKQYH 136 (220)
Q Consensus 126 ePvyVNaKQY~ 136 (220)
--|||||-||.
T Consensus 56 VSIFVNP~QF~ 66 (287)
T 3q12_A 56 VTIFVNPLQFE 66 (287)
T ss_dssp EEECCCGGGCS
T ss_pred EEeccCcccCC
Confidence 46999999963
No 10
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=6.76 E-value=1.2e+02 Score=26.92 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 027709 126 EPVFVNAKQYH 136 (220)
Q Consensus 126 ePvyVNaKQY~ 136 (220)
--|||||-||.
T Consensus 55 VSIFVNP~QF~ 65 (285)
T 3mxt_A 55 VSIFVNPMQFG 65 (285)
T ss_dssp EEECCCGGGCC
T ss_pred EEeccCccccC
Confidence 56999999953
Done!