Query 027709
Match_columns 220
No_of_seqs 140 out of 205
Neff 2.6
Searched_HMMs 13730
Date Tue Mar 26 00:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kl9a2 b.40.4.5 (A:3-88) Euka 17.3 11 0.00078 24.8 -0.4 23 3-25 1-28 (86)
2 d1v8fa_ c.26.1.4 (A:) Pantothe 12.5 23 0.0016 28.8 0.2 10 126-135 48-57 (276)
3 d1nvpc_ b.56.1.1 (C:) Large ch 11.2 46 0.0034 21.2 1.4 11 6-16 21-31 (47)
4 d1ob1c2 g.3.11.4 (C:46-96) Mer 10.0 39 0.0029 21.9 0.7 22 68-89 27-49 (51)
5 d1ihoa_ c.26.1.4 (A:) Pantothe 9.7 32 0.0023 28.0 0.2 11 126-136 53-63 (282)
6 d1nh2c_ b.56.1.1 (C:) Large ch 8.4 67 0.0049 21.2 1.4 12 6-17 32-43 (59)
7 d2a84a1 c.26.1.4 (A:3-288) Pan 8.3 35 0.0025 27.7 -0.1 12 126-137 62-73 (286)
8 d1xjua_ d.2.1.3 (A:) Endolysin 5.4 1.8E+02 0.013 20.2 2.5 25 129-153 130-154 (158)
9 d1z60a1 g.49.1.2 (A:328-386) T 4.3 86 0.0063 20.6 0.0 7 161-167 47-53 (59)
10 d2j5la1 g.61.1.1 (A:479-512) A 4.1 1.2E+02 0.009 18.0 0.6 8 2-9 21-28 (34)
No 1
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.33 E-value=11 Score=24.81 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=13.0
Q ss_pred cceeeeEee----e-ccccccccCCCCC
Q 027709 3 LSCRFYMRD----G-LMTSSVHDMSDNS 25 (220)
Q Consensus 3 ~~~~~~~~~----~-~mts~~~~~s~n~ 25 (220)
|+||||... | +.+--|..+.+++
T Consensus 1 ~~cr~~~~~~p~~G~iv~G~V~~i~~~G 28 (86)
T d1kl9a2 1 LSCRFYQHKFPEVEDVVMVNVRSIAEMG 28 (86)
T ss_dssp CCCCSSSSSSCCTTCEEEEEEEEECSSE
T ss_pred CeeeehhhcCCCCCCEEEEEEEEEeCCe
Confidence 688888653 2 4444455555543
No 2
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=12.48 E-value=23 Score=28.79 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=8.0
Q ss_pred Cceeechhhh
Q 027709 126 EPVFVNAKQY 135 (220)
Q Consensus 126 ePvyVNaKQY 135 (220)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 4689999984
No 3
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.19 E-value=46 Score=21.16 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.1
Q ss_pred eeeEeeecccc
Q 027709 6 RFYMRDGLMTS 16 (220)
Q Consensus 6 ~~~~~~~~mts 16 (220)
+|+.+||||+=
T Consensus 21 Kc~lKdGim~i 31 (47)
T d1nvpc_ 21 KFHLKDGIMNL 31 (47)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEeeEEEE
Confidence 57899999974
No 4
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=9.97 E-value=39 Score=21.92 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.4
Q ss_pred cccccc-cCCCCCCCcccccccC
Q 027709 68 HAMAPA-AYPYPDPYYRSIFAPY 89 (220)
Q Consensus 68 ~s~a~~-~yPY~Dpyygg~~aaY 89 (220)
.-|+|. .-|-+.|||.|+|-.|
T Consensus 27 kkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 27 KKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCCEEEECSTTCCEEGGGTEECC
T ss_pred ceEEEEecCCCCCcccceEEeec
Confidence 346766 7788899999999775
No 5
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=9.71 E-value=32 Score=27.96 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 027709 126 EPVFVNAKQYH 136 (220)
Q Consensus 126 ePvyVNaKQY~ 136 (220)
-.|||||.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 46999998864
No 6
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.39 E-value=67 Score=21.20 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.6
Q ss_pred eeeEeeeccccc
Q 027709 6 RFYMRDGLMTSS 17 (220)
Q Consensus 6 ~~~~~~~~mts~ 17 (220)
+|+.++|||+-.
T Consensus 32 K~~LKdGim~in 43 (59)
T d1nh2c_ 32 KCSLKDGVVTIN 43 (59)
T ss_dssp EEEEEEEEEEET
T ss_pred EEEEeeeEEEEC
Confidence 678999999743
No 7
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.31 E-value=35 Score=27.73 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.7
Q ss_pred CceeechhhhHH
Q 027709 126 EPVFVNAKQYHG 137 (220)
Q Consensus 126 ePvyVNaKQY~r 137 (220)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 578999999754
No 8
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.39 E-value=1.8e+02 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=18.3
Q ss_pred eechhhhHHHHHHHHHHHHHHhhhh
Q 027709 129 FVNAKQYHGILRRRQSRAKAESENK 153 (220)
Q Consensus 129 yVNaKQY~rIlRRRq~RaklE~~~k 153 (220)
+.+-|-..++.+||++.+.|=.++.
T Consensus 130 ~~~g~~~~GL~~RR~~E~~L~l~g~ 154 (158)
T d1xjua_ 130 NSNGVPLRGLKIRREKERQLCLTGL 154 (158)
T ss_dssp EETTEECHHHHHHHHHHHHHHHTTT
T ss_pred hcCCEEChhHHHHHHHHHHHHHccc
Confidence 3344557899999999888866654
No 9
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=86 Score=20.55 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.2
Q ss_pred cccchhh
Q 027709 161 YLHESRH 167 (220)
Q Consensus 161 YLHESRH 167 (220)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 3444444
No 10
>d2j5la1 g.61.1.1 (A:479-512) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=4.08 E-value=1.2e+02 Score=17.97 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=6.3
Q ss_pred CcceeeeE
Q 027709 2 NLSCRFYM 9 (220)
Q Consensus 2 ~~~~~~~~ 9 (220)
|-+|+||.
T Consensus 21 ~StC~FyV 28 (34)
T d2j5la1 21 QSTCRFFV 28 (34)
T ss_dssp CSSCCCEE
T ss_pred cCcccEEE
Confidence 56799996
Done!