Query 027710
Match_columns 220
No_of_seqs 143 out of 1067
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 14:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 4.3E-74 9.4E-79 489.5 21.9 187 27-219 1-187 (188)
2 PRK00642 inorganic pyrophospha 100.0 8.1E-70 1.7E-74 468.7 21.0 178 31-214 5-204 (205)
3 PRK01250 inorganic pyrophospha 100.0 1.9E-68 4.1E-73 450.9 19.7 171 36-212 1-175 (176)
4 PLN02707 Soluble inorganic pyr 100.0 5.6E-68 1.2E-72 471.9 19.9 199 11-218 34-259 (267)
5 PRK02230 inorganic pyrophospha 100.0 6.5E-64 1.4E-68 425.6 19.2 154 60-213 8-162 (184)
6 cd00412 pyrophosphatase Inorga 100.0 8.5E-64 1.8E-68 415.3 17.0 149 60-208 6-155 (155)
7 PF00719 Pyrophosphatase: Inor 100.0 1.8E-63 3.9E-68 413.5 14.8 154 59-212 2-156 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 6E-62 1.3E-66 409.6 17.1 170 36-212 1-171 (171)
9 KOG1626 Inorganic pyrophosphat 100.0 4.5E-59 9.7E-64 410.1 15.1 200 11-218 5-235 (279)
10 KOG1626 Inorganic pyrophosphat 94.4 0.031 6.7E-07 50.6 2.9 51 16-72 19-70 (279)
11 COG1094 Predicted RNA-binding 60.4 31 0.00067 30.2 6.3 111 66-208 36-163 (194)
12 COG4766 EutQ Ethanolamine util 43.7 20 0.00043 30.7 2.5 30 60-97 145-174 (176)
13 PF07177 Neuralized: Neuralize 42.8 25 0.00055 25.4 2.6 22 111-132 30-51 (69)
14 cd05694 S1_Rrp5_repeat_hs2_sc2 39.9 19 0.00042 25.9 1.6 28 96-133 30-57 (74)
15 PF06249 EutQ: Ethanolamine ut 38.8 25 0.00053 29.6 2.3 29 60-96 122-150 (152)
16 smart00588 NEUZ domain in neur 35.1 48 0.001 26.5 3.3 44 108-155 28-71 (123)
17 cd01460 vWA_midasin VWA_Midasi 28.9 25 0.00054 31.9 0.8 27 154-180 237-263 (266)
18 KOG1110 Putative steroid membr 28.9 32 0.00069 29.9 1.4 37 145-182 109-145 (183)
19 PLN02150 terpene synthase/cycl 27.4 93 0.002 23.8 3.7 25 195-219 20-45 (96)
20 PF13333 rve_2: Integrase core 27.4 50 0.0011 22.1 1.9 35 174-211 1-35 (52)
21 TIGR01659 sex-lethal sex-letha 26.5 2.6E+02 0.0055 26.2 7.1 87 122-208 131-257 (346)
22 PF09476 Pilus_CpaD: Pilus bio 21.6 2.6E+02 0.0056 24.2 5.7 46 163-208 52-103 (203)
23 PF07469 DUF1518: Domain of un 21.1 53 0.0011 23.5 1.1 16 88-103 17-32 (58)
24 PF14259 RRM_6: RNA recognitio 20.2 89 0.0019 20.9 2.1 39 169-207 11-60 (70)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=4.3e-74 Score=489.47 Aligned_cols=187 Identities=90% Similarity=1.438 Sum_probs=182.4
Q ss_pred cccCCCcccCCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCC
Q 027710 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 106 (220)
Q Consensus 27 ~~~~~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gD 106 (220)
||+++..++|||||||++++.|++||| |||||+||++|||+|+++|.|++||++++++.||||||||||||++|
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~v------VIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~D 74 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNC------VVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCED 74 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEE------EEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCC
Confidence 477888999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCCCc
Q 027710 107 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENK 186 (220)
Q Consensus 107 GDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~legK 186 (220)
|||||||||++.|++||++++|||||+|+|+|+||+|||||||+++||+|++|++++|||++++++|+|||++||.+|||
T Consensus 75 gDPLDvlvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK 154 (188)
T PLN02373 75 NDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENK 154 (188)
T ss_pred CCccEEEEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 027710 187 KVDVEDFLPAEAAIEAIKYSMDLYASYIVESLR 219 (220)
Q Consensus 187 ~v~~~~~~~~~~A~~vI~~~~~~~~~~i~~~~~ 219 (220)
++++++|.|+++|+++|++|+++|++++.+.++
T Consensus 155 ~v~v~g~~~~~~A~~~I~~~~~~y~~~~~~~~~ 187 (188)
T PLN02373 155 EVAVNDFLPAEAAIEAIQYSMDLYAEYIVESLR 187 (188)
T ss_pred eEEeCCccCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999887765
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=8.1e-70 Score=468.72 Aligned_cols=178 Identities=43% Similarity=0.699 Sum_probs=170.2
Q ss_pred CCcccCCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccC------
Q 027710 31 RSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC------ 104 (220)
Q Consensus 31 ~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~------ 104 (220)
.+..+|||||||++++.|++||| ||||||||++|||+|+++|.+++||++++++.||||||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~------VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~ 78 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCC------YIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGK 78 (205)
T ss_pred cccccCccccCCCCCCCCCEEEE------EEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccc
Confidence 34567999999999998999999 999999999999999999999999999999999999999999995
Q ss_pred ------------CCCCcceEEEecCccCCCcce-EEEEEeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHH
Q 027710 105 ------------EDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLA 171 (220)
Q Consensus 105 ------------gDGDPLDvlvl~~~p~~~G~v-~~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~ 171 (220)
|||||||||||++.|++||++ ++|||||+|+|+|+||+|||||||+++||+|++|+|++||++++++
T Consensus 79 ~~~~~~~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~ 158 (205)
T PRK00642 79 LSGEQSGREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLD 158 (205)
T ss_pred ccccccccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHH
Confidence 799999999999999999995 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC---ceeEeccccCHHHHHHHHHHHHHHHHHHH
Q 027710 172 EIRRFFEDYKKNEN---KKVDVEDFLPAEAAIEAIKYSMDLYASYI 214 (220)
Q Consensus 172 ~I~~fF~~YK~leg---K~v~~~~~~~~~~A~~vI~~~~~~~~~~i 214 (220)
+|+|||++||.++| |++.++||.++++|+++|++||++|+++.
T Consensus 159 ~I~~fF~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~~~y~~~~ 204 (205)
T PRK00642 159 RLQHYFLTYKATPGELIKGVEIVGIYGKEEAQKVIQLAHEDYANKF 204 (205)
T ss_pred HHHHHHHHHcCcccCCCCeEEECCCcCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999995 45889999999999999999999998864
No 3
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.9e-68 Score=450.94 Aligned_cols=171 Identities=43% Similarity=0.727 Sum_probs=167.0
Q ss_pred CCCCCCCCCCCCCceeeccCCCceEEEECCCCC-ceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEE
Q 027710 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLV 114 (220)
Q Consensus 36 s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~-~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlv 114 (220)
.+||++|.+++.|++||| ||||||||+ +|||+|+++|.+++||++++++.||||||||||||++|||||||||
T Consensus 1 ~~~~~l~~~~~~~~~v~v------vvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlv 74 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINV------IIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLV 74 (176)
T ss_pred CChhhCCCCCCCCCEEEE------EEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEE
Confidence 379999999999999999 999999999 8999999999999999999999999999999999999999999999
Q ss_pred ecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEec
Q 027710 115 LMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVE 191 (220)
Q Consensus 115 l~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~ 191 (220)
|++.|++||++++|||||+|+|+|+||.|||||||+.+ ||+|++|++++|||++++++|+|||++||.++ ||++++.
T Consensus 75 l~~~~~~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~ 154 (176)
T PRK01250 75 VTPYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVE 154 (176)
T ss_pred ecCCCCCCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEec
Confidence 99999999999999999999999999999999999998 79999999999999999999999999999998 9999999
Q ss_pred cccCHHHHHHHHHHHHHHHHH
Q 027710 192 DFLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 192 ~~~~~~~A~~vI~~~~~~~~~ 212 (220)
+|.|+++|+++|++|+++|++
T Consensus 155 g~~~~~~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 155 GWGGAEEAKAEIVEAIERAKK 175 (176)
T ss_pred CccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999975
No 4
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=5.6e-68 Score=471.89 Aligned_cols=199 Identities=30% Similarity=0.508 Sum_probs=184.1
Q ss_pred CCCCCCCCCcchhhhhcccC-CCcccCCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecC--CCCeEeeeecc
Q 027710 11 NNSGGPPVALNERILSSMSH-RSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKA--SGLIKVDRVLY 87 (220)
Q Consensus 11 ~~~~g~~~~~~~r~~~~~~~-~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~--~g~i~~Dr~l~ 87 (220)
..++|+++|.+||++ |.. .+..+|||||||++ ..+++||| ||||||||++|||+|++ .+.|+|||.+.
T Consensus 34 ~~~~G~~~t~~~r~~--~~~~~g~~~spwHdIpl~-~~~~~vn~------VVEIPrgs~~KyEidk~~~~npi~qD~~~g 104 (267)
T PLN02707 34 VEEEGEAETLDYRVF--FSDGSGKKVSPWHDIPLH-AGDGTFNF------VVEIPKETSAKMEVATDEPFTPIKQDTKKG 104 (267)
T ss_pred EEeecCCCCcceEEE--EECCCCCccCchhcCCCC-CCCCEEEE------EEEECCCCceeEEECccCCCCCEEEeeecC
Confidence 467899999999998 544 57779999999999 55899999 99999999999999976 56899999998
Q ss_pred ccccCcc----ccCcCcccc-------------CCCCCcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEe
Q 027710 88 SSVVYPH----NYGFIPRTI-------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVC 150 (220)
Q Consensus 88 ~~~~YP~----NYGfIP~T~-------------~gDGDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~ 150 (220)
..+.||+ ||||||||| +|||||||||||++.|+.||++++|||||+|+|+|+||+|||||||+
T Consensus 105 ~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~ 184 (267)
T PLN02707 105 KLRDYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAIS 184 (267)
T ss_pred ceEECCCcCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEE
Confidence 8888887 999999997 58999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhH---HHHHHHHHHHhhcCCCceeEe----ccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 027710 151 ADDPEFRHYKDIKELPPHR---LAEIRRFFEDYKKNENKKVDV----EDFLPAEAAIEAIKYSMDLYASYIVESL 218 (220)
Q Consensus 151 ~~dp~~~~i~di~Dl~~~~---l~~I~~fF~~YK~legK~v~~----~~~~~~~~A~~vI~~~~~~~~~~i~~~~ 218 (220)
++||+|++|+|++||+++. +++|+|||++||.++||++++ ++|.|+++|+++|++||++|++++++++
T Consensus 185 ~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~~ 259 (267)
T PLN02707 185 ADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRSI 259 (267)
T ss_pred CCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999998654 899999999999999999876 6899999999999999999999987654
No 5
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=6.5e-64 Score=425.57 Aligned_cols=154 Identities=43% Similarity=0.716 Sum_probs=151.2
Q ss_pred EEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEecCccCCCcceEEEEEeeeEEeeeC
Q 027710 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 139 (220)
Q Consensus 60 VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ 139 (220)
|||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||++.|++||++++|||||+|+|+|+
T Consensus 8 vIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl~m~D~ 87 (184)
T PRK02230 8 TIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAMKMIDD 87 (184)
T ss_pred EEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCCCcee-EeccccCHHHHHHHHHHHHHHHHHH
Q 027710 140 GEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKV-DVEDFLPAEAAIEAIKYSMDLYASY 213 (220)
Q Consensus 140 ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~legK~v-~~~~~~~~~~A~~vI~~~~~~~~~~ 213 (220)
||.|||||||+.+||+|++|++++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+++|+++
T Consensus 88 ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 88 GETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECVELMKKY 162 (184)
T ss_pred CCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998876 5999999999999999999999875
No 6
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=8.5e-64 Score=415.26 Aligned_cols=149 Identities=54% Similarity=0.934 Sum_probs=146.8
Q ss_pred EEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEecCccCCCcceEEEEEeeeEEeeeC
Q 027710 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 139 (220)
Q Consensus 60 VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ 139 (220)
||||||||++|||+|+++|.|++||++++++.||||||||||||++||||||||||++.|++||++++|||||+|+|+|+
T Consensus 6 vIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l~m~D~ 85 (155)
T cd00412 6 VIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVLKMIDE 85 (155)
T ss_pred EEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCCC-ceeEeccccCHHHHHHHHHHHHH
Q 027710 140 GEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNEN-KKVDVEDFLPAEAAIEAIKYSMD 208 (220)
Q Consensus 140 ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg-K~v~~~~~~~~~~A~~vI~~~~~ 208 (220)
||.|||||||+.+||+|++|++++|||++++++|+|||++||.++| |++++.+|.|+++|+++|++|++
T Consensus 86 ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~~ 155 (155)
T cd00412 86 GETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155 (155)
T ss_pred CCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999996 78999999999999999999984
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=1.8e-63 Score=413.48 Aligned_cols=154 Identities=54% Similarity=0.899 Sum_probs=145.9
Q ss_pred eEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEecCccCCCcceEEEEEeeeEEeee
Q 027710 59 QVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMID 138 (220)
Q Consensus 59 ~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~~~p~~~G~v~~vrviG~l~miD 138 (220)
+||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||++.|++||++++||+||+|+|+|
T Consensus 2 ~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~D 81 (156)
T PF00719_consen 2 VVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMID 81 (156)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEEE
T ss_pred EEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEee
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcC-CCceeEeccccCHHHHHHHHHHHHHHHHH
Q 027710 139 QGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKN-ENKKVDVEDFLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 139 ~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~l-egK~v~~~~~~~~~~A~~vI~~~~~~~~~ 212 (220)
+||+|||||||+.+||+|++|++++|++++.+++|+|||++||.+ +||++.+++|.++++|+++|++||++|++
T Consensus 82 ~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 82 DGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAHERYKK 156 (156)
T ss_dssp TTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999 79999999999999999999999999985
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=6e-62 Score=409.64 Aligned_cols=170 Identities=48% Similarity=0.809 Sum_probs=166.3
Q ss_pred CCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEe
Q 027710 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVL 115 (220)
Q Consensus 36 s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl 115 (220)
|+||++|++++. ..+|| +||||+||++|||+|+++|.+.+||++++++.||+||||||+||++|||||||||+
T Consensus 1 ~~~~~~~~~~~~-~~i~v------viEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi 73 (171)
T COG0221 1 MDLHKIPAGPDD-EDINV------VIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVI 73 (171)
T ss_pred CCccccCCCCCc-ceEEE------EEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEE
Confidence 589999999887 79999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEecccc
Q 027710 116 MQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFL 194 (220)
Q Consensus 116 ~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~ 194 (220)
+++|+.|||+++||+||+|+|+|+||.|||||||+..||+|++|++++|++.+++++|+|||++||.+| ||++++.||.
T Consensus 74 ~~~p~~pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~ 153 (171)
T COG0221 74 GEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWE 153 (171)
T ss_pred cCcCCCceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 027710 195 PAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 195 ~~~~A~~vI~~~~~~~~~ 212 (220)
|+++|+++|++|+++|++
T Consensus 154 ~~~~A~~~i~~~~~~~k~ 171 (171)
T COG0221 154 DAEEAKKEIKEAIERYKE 171 (171)
T ss_pred CHHHHHHHHHHHHHHhhC
Confidence 999999999999999974
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=4.5e-59 Score=410.07 Aligned_cols=200 Identities=37% Similarity=0.555 Sum_probs=179.8
Q ss_pred CCCCCCCCCcchhhhhcccCCCc-ccCCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEec-----------CCC
Q 027710 11 NNSGGPPVALNERILSSMSHRSV-AAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDK-----------ASG 78 (220)
Q Consensus 11 ~~~~g~~~~~~~r~~~~~~~~~~-~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~-----------~~g 78 (220)
-.+.|+.+++++|++ +...+. .+|+|||||+..+.-.+||| |+||||++++|+|+.+ ++|
T Consensus 5 t~e~g~~~s~~~rvy--~~~~~~~~iS~fhdipl~a~~~~~~nm------vvEiPrwtnak~EIs~k~~~~pikqD~KkG 76 (279)
T KOG1626|consen 5 TVETGKKYSLDYRVY--FPKLNGRIISPFHDIPLAAHPWHDLNM------VVEIPRWTNAKMEISKKEPFNPIKQDKKKG 76 (279)
T ss_pred eeeccccCCccceee--ecCCCCccccccccCccccCccccEee------cccccceeeeEEEEeccCCCCcceeeccCC
Confidence 357899999999998 666544 89999999999887788999 9999999999999985 457
Q ss_pred CeEeeeeccccccCccccCcCccccC------------CCCCcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceE
Q 027710 79 LIKVDRVLYSSVVYPHNYGFIPRTIC------------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKI 146 (220)
Q Consensus 79 ~i~~Dr~l~~~~~YP~NYGfIP~T~~------------gDGDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~Ki 146 (220)
.++++|.+|++..||+|||||||||+ |||||||||+||+++..+||+++||+||+|+||||||+||||
T Consensus 77 klR~v~n~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKi 156 (279)
T KOG1626|consen 77 KLRFVRNLFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKI 156 (279)
T ss_pred ceEEEEecccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceE
Confidence 78899999999999999999999997 577999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCC---CCCCCCCCChhHHHHHHHHHHHhhcCCCc----eeEeccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 027710 147 IAVCADDPEFR---HYKDIKELPPHRLAEIRRFFEDYKKNENK----KVDVEDFLPAEAAIEAIKYSMDLYASYIVESL 218 (220)
Q Consensus 147 iaV~~~dp~~~---~i~di~Dl~~~~l~~I~~fF~~YK~legK----~v~~~~~~~~~~A~~vI~~~~~~~~~~i~~~~ 218 (220)
|||.++||.++ +|+|++.++|++|+++++||+.||.++|| ++..+.+.++++|.++|++||+.|+.+|.+++
T Consensus 157 IAIdvnDP~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 157 IAIDVNDPLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred EEEECCCcchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999554 45555567899999999999999966655 46678999999999999999999999999876
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=94.45 E-value=0.031 Score=50.65 Aligned_cols=51 Identities=35% Similarity=0.451 Sum_probs=45.8
Q ss_pred CCCCcchhhhhcccCCCcccCCCCCCCCCCCCCceeeccCCCceEEEEC-CCCCceEE
Q 027710 16 PPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIG-KGGKVKYE 72 (220)
Q Consensus 16 ~~~~~~~r~~~~~~~~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIP-rgs~~KyE 72 (220)
-..+++.|++|+|+++...+++||++-.....|-.+|+ ++||. +++.++|+
T Consensus 19 y~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtna------k~EIs~k~~~~pik 70 (279)
T KOG1626|consen 19 YFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNA------KMEISKKEPFNPIK 70 (279)
T ss_pred eecCCCCccccccccCccccCccccEeecccccceeee------EEEEeccCCCCcce
Confidence 35678889999999999999999999999999999999 99999 78877664
No 11
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=60.41 E-value=31 Score=30.24 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=81.5
Q ss_pred CCCceEEEecCCCCeEeeeeccccccC----------ccccCcCccc---cCCCCCcceEEEecCccCCCcc---eEEEE
Q 027710 66 GGKVKYELDKASGLIKVDRVLYSSVVY----------PHNYGFIPRT---ICEDSDPMDVLVLMQEPVLPGS---FLRCR 129 (220)
Q Consensus 66 gs~~KyE~d~~~g~i~~Dr~l~~~~~Y----------P~NYGfIP~T---~~gDGDPLDvlvl~~~p~~~G~---v~~vr 129 (220)
-+..|.++|.++|.+.+...-.+..++ -..=||=|.- |-.|+--|||+.|+.....++. .++.|
T Consensus 36 ~~~~~~~iD~~~~~V~i~~~~~t~Dp~~~~ka~d~VkAIgrGF~pe~A~~LL~d~~~levIdi~~~~~~~~~~l~R~kgR 115 (194)
T COG1094 36 KTGVKLRIDSKTGSVTIRTTRKTEDPLALLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGR 115 (194)
T ss_pred hcCeEEEEECCCCeEEEEecCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEEEEEHHHhccCchhhhhHhhce
Confidence 455788899999987776542211111 1356666653 4577889999999986665666 34688
Q ss_pred EeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCCCceeEe-ccccCHHHHHHHHHHHHH
Q 027710 130 AIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDV-EDFLPAEAAIEAIKYSMD 208 (220)
Q Consensus 130 viG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~legK~v~~-~~~~~~~~A~~vI~~~~~ 208 (220)
+|| -+| .++..|++.=+.|-..-|++|.+ +++.+.+.|.+.|+-+++
T Consensus 116 IIG-----~~G---------------------------kTr~~IE~lt~~~I~V~g~tVaiiG~~~~v~iAr~AVemli~ 163 (194)
T COG1094 116 IIG-----REG---------------------------KTRRAIEELTGVYISVYGKTVAIIGGFEQVEIAREAVEMLIN 163 (194)
T ss_pred eeC-----CCc---------------------------hHHHHHHHHhCCeEEEeCcEEEEecChhhhHHHHHHHHHHHc
Confidence 888 111 47889999999999999999985 789999999999998876
No 12
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=43.67 E-value=20 Score=30.67 Aligned_cols=30 Identities=37% Similarity=0.757 Sum_probs=21.3
Q ss_pred EEEECCCCCceEEEecCCCCeEeeeeccccccCccccC
Q 027710 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYG 97 (220)
Q Consensus 60 VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYG 97 (220)
||=|||||..++-. +|. -|++| ..||+|+-
T Consensus 145 vifiPKgssIefst---~ge---a~fly--vtyPanWq 174 (176)
T COG4766 145 VIFIPKGSSIEFST---TGE---AKFLY--VTYPANWQ 174 (176)
T ss_pred EEEecCCCeEEEec---cce---EEEEE--EEcccccc
Confidence 55699999988854 332 25555 78999974
No 13
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=42.77 E-value=25 Score=25.41 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.7
Q ss_pred eEEEecCccCCCcceEEEEEee
Q 027710 111 DVLVLMQEPVLPGSFLRCRAIG 132 (220)
Q Consensus 111 Dvlvl~~~p~~~G~v~~vrviG 132 (220)
..||++++|+.+|+.+.+|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4689999999999999999853
No 14
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=39.89 E-value=19 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=20.8
Q ss_pred cCcCccccCCCCCcceEEEecCccCCCcceEEEEEeee
Q 027710 96 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 133 (220)
Q Consensus 96 YGfIP~T~~gDGDPLDvlvl~~~p~~~G~v~~vrviG~ 133 (220)
=||||.+--.+. ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 478887754433 5688999999999863
No 15
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=38.75 E-value=25 Score=29.59 Aligned_cols=29 Identities=34% Similarity=0.693 Sum_probs=17.1
Q ss_pred EEEECCCCCceEEEecCCCCeEeeeeccccccCcccc
Q 027710 60 VVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNY 96 (220)
Q Consensus 60 VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NY 96 (220)
||=||+||++.|.-... -|.+| ..||+|+
T Consensus 122 vi~iPkGs~I~fst~~~------a~~~Y--v~yPa~W 150 (152)
T PF06249_consen 122 VIFIPKGSTITFSTPDY------ARFFY--VTYPANW 150 (152)
T ss_dssp EEEE-TT-EEEEEEEEE------EEEEE--EEESTT-
T ss_pred EEEECCCCEEEEecCCC------EEEEE--EECCCcc
Confidence 56699999999864311 13444 6899987
No 16
>smart00588 NEUZ domain in neuralized proteins.
Probab=35.13 E-value=48 Score=26.48 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=29.8
Q ss_pred CcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecCCCC
Q 027710 108 DPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 155 (220)
Q Consensus 108 DPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~dp~ 155 (220)
+.-+.+|++++|+.+|+.+.+|+.-.-..- .--==+++-..||.
T Consensus 28 ~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~ 71 (123)
T smart00588 28 DFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPA 71 (123)
T ss_pred CcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCcc
Confidence 356889999999999999999987432110 00122466677884
No 17
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=28.92 E-value=25 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHh
Q 027710 154 PEFRHYKDIKELPPHRLAEIRRFFEDY 180 (220)
Q Consensus 154 p~~~~i~di~Dl~~~~l~~I~~fF~~Y 180 (220)
|.|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 456667889999988899999999854
No 18
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=28.86 E-value=32 Score=29.89 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=28.3
Q ss_pred eEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhc
Q 027710 145 KIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKK 182 (220)
Q Consensus 145 KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~ 182 (220)
+.||...-|. -+.+.|++||....++.+.+|...||.
T Consensus 109 R~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 109 RGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 4444444443 456778999999999999999999985
No 19
>PLN02150 terpene synthase/cyclase family protein
Probab=27.44 E-value=93 Score=23.80 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHhhhc
Q 027710 195 PAEAAIEAIKYSM-DLYASYIVESLR 219 (220)
Q Consensus 195 ~~~~A~~vI~~~~-~~~~~~i~~~~~ 219 (220)
+.++|.+.|++-+ +.|++..++.|+
T Consensus 20 seeeA~~~i~~li~~~WK~iN~e~l~ 45 (96)
T PLN02150 20 TKEEAVSELKKMIRDNYKIVMEEFLT 45 (96)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999998888 689999988876
No 20
>PF13333 rve_2: Integrase core domain
Probab=27.38 E-value=50 Score=22.06 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCceeEeccccCHHHHHHHHHHHHHHHH
Q 027710 174 RRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYA 211 (220)
Q Consensus 174 ~~fF~~YK~legK~v~~~~~~~~~~A~~vI~~~~~~~~ 211 (220)
+.||...|.-- +....|.+.+++.+.|.+-++.|.
T Consensus 1 Esff~~lK~E~---~~~~~~~t~eel~~~I~~YI~~yN 35 (52)
T PF13333_consen 1 ESFFGTLKTEM---LYRQKFKTREELKQAIDEYIDYYN 35 (52)
T ss_pred CcchHhhcchh---cCCcccchHHHHHHHHHHHHHHhc
Confidence 35788777422 333468999999999999998873
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=26.50 E-value=2.6e+02 Score=26.17 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=51.4
Q ss_pred CcceEEEEEe-----------eeEEeeeCC------------CCcceEEEEecCCCCCCCCCC----CCCCChhH-HHHH
Q 027710 122 PGSFLRCRAI-----------GLMPMIDQG------------EKDDKIIAVCADDPEFRHYKD----IKELPPHR-LAEI 173 (220)
Q Consensus 122 ~G~v~~vrvi-----------G~l~miD~g------------e~D~KiiaV~~~dp~~~~i~d----i~Dl~~~~-l~~I 173 (220)
-|.|+.||++ |.+.+.|+. +...|-|-|....|....+.+ +.-||..+ -++|
T Consensus 131 ~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L 210 (346)
T TIGR01659 131 IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQL 210 (346)
T ss_pred cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHH
Confidence 3777777774 555554433 334566666544443222222 23455443 3568
Q ss_pred HHHHHHhhcCC----------Cc--eeEeccccCHHHHHHHHHHHHH
Q 027710 174 RRFFEDYKKNE----------NK--KVDVEDFLPAEAAIEAIKYSMD 208 (220)
Q Consensus 174 ~~fF~~YK~le----------gK--~v~~~~~~~~~~A~~vI~~~~~ 208 (220)
+++|..|-..+ |+ -+.+..|.+.++|.+.|+....
T Consensus 211 ~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 211 DTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred HHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99999986432 22 3556789999999998886554
No 22
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=21.61 E-value=2.6e+02 Score=24.17 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceeEeccccC------HHHHHHHHHHHHH
Q 027710 163 KELPPHRLAEIRRFFEDYKKNENKKVDVEDFLP------AEAAIEAIKYSMD 208 (220)
Q Consensus 163 ~Dl~~~~l~~I~~fF~~YK~legK~v~~~~~~~------~~~A~~vI~~~~~ 208 (220)
.-|.+...+.|+.||..|...-+..+.+.-..+ +..+.+.|.+...
T Consensus 52 ~~Lt~~q~~~l~~f~~~~~~~~~~~v~i~~psg~~n~~aa~~~~~~i~~~l~ 103 (203)
T PF09476_consen 52 GGLTPSQRDRLRGFASRYGRRGGGRVTIDVPSGSANARAASAAAAQIRALLA 103 (203)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHHHHHHHHHHHH
Confidence 347888999999999999988777788776665 4444444544443
No 23
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=21.07 E-value=53 Score=23.54 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=12.2
Q ss_pred ccccCccccCcCcccc
Q 027710 88 SSVVYPHNYGFIPRTI 103 (220)
Q Consensus 88 ~~~~YP~NYGfIP~T~ 103 (220)
.-..||-|||..+|+=
T Consensus 17 qqFpyppnyGm~qq~d 32 (58)
T PF07469_consen 17 QQFPYPPNYGMSQQPD 32 (58)
T ss_pred cccccCCCCCccCCCC
Confidence 3457888999998763
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.20 E-value=89 Score=20.95 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCC------C-----ceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE------N-----KKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le------g-----K~v~~~~~~~~~~A~~vI~~~~ 207 (220)
..++|.+||..|-..+ + +...+..|.+.++|.++++..+
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 3567999999984321 1 2345678999999999988764
Done!