Query 027710
Match_columns 220
No_of_seqs 143 out of 1067
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 00:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 2.2E-74 7.5E-79 486.7 16.4 175 35-215 1-175 (178)
2 3gvf_A Inorganic pyrophosphata 100.0 3.6E-72 1.2E-76 478.9 18.0 178 29-212 15-196 (196)
3 2prd_A Pyrophosphate phosphohy 100.0 7.1E-72 2.4E-76 469.9 19.1 171 36-212 1-174 (174)
4 3fq3_A Inorganic pyrophosphata 100.0 9.1E-72 3.1E-76 476.7 19.5 178 29-212 15-196 (197)
5 3ld3_A Inorganic pyrophosphata 100.0 4E-71 1.4E-75 473.3 18.6 177 30-212 16-196 (199)
6 2au7_A Inorganic pyrophosphata 100.0 2.2E-70 7.5E-75 461.2 20.0 170 37-212 1-174 (175)
7 2bqx_A Inorganic pyrophosphata 100.0 4.2E-70 1.4E-74 458.8 17.5 169 37-212 2-173 (173)
8 3d53_A Inorganic pyrophosphata 100.0 1.6E-69 5.5E-74 455.2 18.2 166 37-209 3-172 (173)
9 3tr4_A Inorganic pyrophosphata 100.0 2.7E-69 9.1E-74 455.6 17.4 167 39-212 6-176 (178)
10 1e9g_A Ppase, inorganic pyroph 100.0 2.2E-70 7.5E-75 490.4 11.2 199 12-218 5-234 (286)
11 1qez_A Ppase, S-ppase, protein 100.0 1.9E-68 6.4E-73 448.8 18.6 167 40-212 2-171 (173)
12 1sxv_A Inorganic pyrophosphata 100.0 5.5E-67 1.9E-71 439.4 15.6 158 49-212 11-169 (172)
13 1jo6_A KCNMB2, potassium large 35.2 6.3 0.00022 25.9 -0.5 22 92-113 2-34 (45)
14 2yue_A Protein neuralized; str 31.7 44 0.0015 27.0 3.9 47 110-167 35-84 (168)
15 2l76_A Nfatc2-interacting prot 30.6 60 0.0021 24.2 4.2 61 48-117 19-94 (95)
16 2cqb_A Peptidyl-prolyl CIS-tra 27.4 66 0.0022 22.1 3.8 37 170-206 26-74 (102)
17 2cqh_A IGF-II mRNA-binding pro 27.1 72 0.0025 21.5 3.9 39 169-207 21-65 (93)
18 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.9 72 0.0025 23.1 4.1 36 170-205 77-124 (140)
19 3bs9_A Nucleolysin TIA-1 isofo 26.8 58 0.002 21.5 3.3 39 169-207 19-69 (87)
20 1x5s_A Cold-inducible RNA-bind 25.9 95 0.0033 21.2 4.5 39 169-207 25-75 (102)
21 1why_A Hypothetical protein ri 24.6 59 0.002 22.2 3.1 38 169-206 30-73 (97)
22 2dgt_A RNA-binding protein 30; 24.0 1E+02 0.0035 20.7 4.3 38 169-206 23-64 (92)
23 2e5j_A Methenyltetrahydrofolat 23.5 1.1E+02 0.0039 20.8 4.5 38 169-206 32-76 (97)
24 3mdf_A Peptidyl-prolyl CIS-tra 23.4 61 0.0021 21.3 2.9 37 170-206 21-69 (85)
25 2cqc_A Arginine/serine-rich sp 23.2 81 0.0028 21.1 3.6 38 169-206 28-77 (95)
26 2x1f_A MRNA 3'-END-processing 22.2 1E+02 0.0035 20.9 4.0 37 170-206 16-64 (96)
27 2hvz_A Splicing factor, argini 22.1 1.5E+02 0.0052 20.1 4.9 39 169-207 13-58 (101)
28 2hzc_A Splicing factor U2AF 65 21.9 86 0.0029 20.6 3.4 34 170-203 20-70 (87)
29 2dgp_A Bruno-like 4, RNA bindi 21.6 1.2E+02 0.004 20.9 4.3 38 170-207 27-76 (106)
30 2ywk_A Putative RNA-binding pr 21.5 66 0.0023 21.7 2.8 38 169-206 29-77 (95)
31 2dnz_A Probable RNA-binding pr 21.3 93 0.0032 20.9 3.6 39 169-207 18-68 (95)
32 2dgs_A DAZ-associated protein 21.0 78 0.0027 21.6 3.1 36 169-204 23-70 (99)
33 1whw_A Hypothetical protein ri 21.0 1.3E+02 0.0043 20.4 4.3 37 170-206 22-70 (99)
34 1x4a_A Splicing factor, argini 20.9 95 0.0032 21.6 3.6 39 169-207 35-82 (109)
35 3goe_A DNA repair protein RAD6 20.6 74 0.0025 23.2 2.9 21 88-114 61-81 (82)
36 1wf1_A RNA-binding protein RAL 20.5 59 0.002 22.9 2.4 38 169-206 41-82 (110)
37 3md1_A Nuclear and cytoplasmic 20.4 85 0.0029 20.4 3.1 37 170-206 15-63 (83)
38 2dh8_A DAZ-associated protein 20.3 70 0.0024 22.1 2.8 37 169-205 29-77 (105)
39 2dgw_A Probable RNA-binding pr 20.3 78 0.0027 21.3 3.0 35 169-204 23-68 (91)
40 1vcb_B Protein (elongin C); tu 20.3 1.3E+02 0.0046 22.2 4.5 46 162-207 62-108 (112)
41 2dha_A FLJ20171 protein; RRM d 20.3 76 0.0026 23.7 3.1 37 169-205 36-87 (123)
42 1x5u_A Splicing factor 3B subu 20.2 1E+02 0.0035 21.1 3.7 37 169-205 28-76 (105)
43 2cph_A RNA binding motif prote 20.0 1.3E+02 0.0044 20.6 4.2 38 169-206 28-78 (107)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=2.2e-74 Score=486.69 Aligned_cols=175 Identities=45% Similarity=0.803 Sum_probs=170.4
Q ss_pred cCCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEE
Q 027710 35 AHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLV 114 (220)
Q Consensus 35 ~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlv 114 (220)
+|||||||++.+.|++||| |||||+||++|||+|+++|.|++||++++++.||+|||||||||++|||||||||
T Consensus 1 ~spwhdi~~g~~~p~~~nv------vIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlv 74 (178)
T 3q46_A 1 MNPFHELEPGPEVPEVVYA------LIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMV 74 (178)
T ss_dssp CCTTTTSCSCSBTTTBCCC------EEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEE
T ss_pred CCccccCCCCCCCCCEEEE------EEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEE
Confidence 5899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCCCceeEecccc
Q 027710 115 LMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFL 194 (220)
Q Consensus 115 l~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~legK~v~~~~~~ 194 (220)
|+++|++|||+++|||||+|+|+|+||+||||||||++||+|++++|++|||++++++|+|||++||.+|||++++.+|.
T Consensus 75 l~~~~~~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~ 154 (178)
T 3q46_A 75 IMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWG 154 (178)
T ss_dssp CCSSCCCTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEE
T ss_pred EcCCCCCCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 027710 195 PAEAAIEAIKYSMDLYASYIV 215 (220)
Q Consensus 195 ~~~~A~~vI~~~~~~~~~~i~ 215 (220)
++++|+++|++|+++|++++.
T Consensus 155 ~~~~A~~~I~~~~~~~~~~~~ 175 (178)
T 3q46_A 155 NAEEAKREILRAIEMYKEKFG 175 (178)
T ss_dssp EHHHHHHHHHHHHHHHHHC-C
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 2
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=3.6e-72 Score=478.88 Aligned_cols=178 Identities=37% Similarity=0.611 Sum_probs=167.5
Q ss_pred cCCCcccCCCCCCCCCCCCCceeeccCCCceEEEECCCCC-ceEEEecCCCCeEeeeeccccccCccccCcCccccCCCC
Q 027710 29 SHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDS 107 (220)
Q Consensus 29 ~~~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~-~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDG 107 (220)
+.+|+++++||+||++++.|++||| |||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnv------vIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~YP~NYGfIP~Tl~~Dg 88 (196)
T 3gvf_A 15 QTQGPGSMSFSNVPAGKDLPQDFNV------IIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDG 88 (196)
T ss_dssp --------CGGGSCSCSBTTTBEEE------EEEECTTCCSEEEEEETTTTEEEEEEECTTCCCCSSEEEECTTCCCTTS
T ss_pred cccCCCCCchhhCCCCCCCCCEEEE------EEEecCCCCceEEEEecCCCCEEEEeEcCCCccCCcccccccCccCCCC
Confidence 4578899999999999999999999 999999998 999999999999999999999999999999999999999
Q ss_pred CcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-
Q 027710 108 DPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNE- 184 (220)
Q Consensus 108 DPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~d--p~~~~i~di~Dl~~~~l~~I~~fF~~YK~le- 184 (220)
||||||||+++|++|||+++|||||+|+|+|+||+||||||||++| |+|++|+|++|||++++++|+|||++||.+|
T Consensus 89 DPLDvlvl~~~p~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~~~l~~I~~fF~~YK~le~ 168 (196)
T 3gvf_A 89 DPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEK 168 (196)
T ss_dssp SCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTST
T ss_pred CceEEEEecCCccCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCHHHHHHHHHHHHHhcCcCC
Confidence 9999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CceeEeccccCHHHHHHHHHHHHHHHHH
Q 027710 185 NKKVDVEDFLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 185 gK~v~~~~~~~~~~A~~vI~~~~~~~~~ 212 (220)
||++++.+|.++++|+++|++|+++|++
T Consensus 169 gK~v~v~gw~~~~~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 169 GKWVKVEGWDGIDAAHKEITDGVANFKK 196 (196)
T ss_dssp TCCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCeEEeccCcCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999963
No 3
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=7.1e-72 Score=469.92 Aligned_cols=171 Identities=40% Similarity=0.677 Sum_probs=168.6
Q ss_pred CCCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEe
Q 027710 36 HPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVL 115 (220)
Q Consensus 36 s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl 115 (220)
|+||+||++++.|+.||| |||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||
T Consensus 1 ~~~h~ip~~~~~p~~~nv------vIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl 74 (174)
T 2prd_A 1 ANLKSLPVGDKAPEVVHM------VIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVL 74 (174)
T ss_dssp CCGGGSCCCTTTTTEEEE------EEEECTTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEEE
T ss_pred CCcccCCCCCCCCCEEEE------EEEecCCCCeEEEEecCCCCEEEeeecCCCCcCCcccccccCcccCCCCceEEEEE
Confidence 799999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC---CceeEecc
Q 027710 116 MQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE---NKKVDVED 192 (220)
Q Consensus 116 ~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le---gK~v~~~~ 192 (220)
+++|+.|||+++|||||+|+|+|+||+|||||||+++||+|++++|++|||++++++|+|||++||.+| ||++++.+
T Consensus 75 ~~~p~~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~g 154 (174)
T 2prd_A 75 STYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTG 154 (174)
T ss_dssp CSSCCCTTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEE
T ss_pred CCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHHHHHHHHHHHHHhcCccccCCCceEECc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCHHHHHHHHHHHHHHHHH
Q 027710 193 FLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 193 ~~~~~~A~~vI~~~~~~~~~ 212 (220)
|.++++|+++|++|+++|++
T Consensus 155 w~~~~~A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 155 WRDRKAALEEVRACIARYKG 174 (174)
T ss_dssp EECHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999973
No 4
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=9.1e-72 Score=476.67 Aligned_cols=178 Identities=35% Similarity=0.637 Sum_probs=167.7
Q ss_pred cCCCcccCCCCCCCCCCCCCceeeccCCCceEEEECCC-CCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCC
Q 027710 29 SHRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKG-GKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDS 107 (220)
Q Consensus 29 ~~~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrg-s~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDG 107 (220)
+..|..+|+||+||++++.|++||| |||||+| |++|||+|+++|.|++||++++++.||+|||||||||++||
T Consensus 15 ~~~g~~im~~~~ip~g~~~p~~vnv------vIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~Dg 88 (197)
T 3fq3_A 15 QTQGPGSMNIDAISIGSNPPEDVNV------IIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDG 88 (197)
T ss_dssp -------CCGGGSCSCSSTTSCEEE------EEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTS
T ss_pred ccCCCCcCCHHHCCCCCCCCCEEEE------EEEecCCCCCEeEEEecCCCCEEEEeecCCCCcCCcccccccCcccCCC
Confidence 3578889999999999999999999 9999995 99999999999999999999999999999999999999999
Q ss_pred CcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-
Q 027710 108 DPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE- 184 (220)
Q Consensus 108 DPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le- 184 (220)
||||||||+++|++|||+++|||||+|+|+|+||+||||||||++ ||+|++|+|++|||++++++|+|||++||.+|
T Consensus 89 DPLDvlvl~~~p~~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~ 168 (197)
T 3fq3_A 89 DPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEP 168 (197)
T ss_dssp SCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTST
T ss_pred CceEEEEEcCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCHHHHHHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CceeEeccccCHHHHHHHHHHHHHHHHH
Q 027710 185 NKKVDVEDFLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 185 gK~v~~~~~~~~~~A~~vI~~~~~~~~~ 212 (220)
||++++.+|.++++|+++|++|+++|++
T Consensus 169 ~K~v~v~~~~~~~~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 169 GKWVKIGDWGDEDYARKFIVEAIERAKG 196 (197)
T ss_dssp TCCEEECCCBCHHHHHHHHHHHHHHHC-
T ss_pred CCeEEeCCCCCHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999975
No 5
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=4e-71 Score=473.34 Aligned_cols=177 Identities=37% Similarity=0.595 Sum_probs=164.1
Q ss_pred CCCcccCCCCCCCCCCCCCceeeccCCCceEEEECCCC-CceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCC
Q 027710 30 HRSVAAHPWHDLEIGPGAPAVCNCCKSLRQVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 108 (220)
Q Consensus 30 ~~~~~~s~whdip~~~~~p~~~n~~~~~~~VIEIPrgs-~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGD 108 (220)
..+..+|+||+||++++.|++||| |||||||| ++|||+|+++|.|++||++++++.||+|||||||||++|||
T Consensus 16 ~~g~~~m~~~~i~~g~~~p~~vnv------vIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGD 89 (199)
T 3ld3_A 16 TQGPGSMNLDDIGSGSNAPEEVNV------VIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGD 89 (199)
T ss_dssp ----------CCCSCTTTTTSEEE------EEEECTTCCSEEEEECTTTCCEEEEEECSSSBCCSSEEEECTTCCCTTSS
T ss_pred cCCCccCChHHCCCCCCCCCEEEE------EEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcCCcccccccccccCCCC
Confidence 467888999999999999999999 99999998 59999999999999999999999999999999999999999
Q ss_pred cceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-C
Q 027710 109 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-N 185 (220)
Q Consensus 109 PLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-g 185 (220)
|||||||+++|++|||+++|||||+|+|+|+||+||||||||++ ||+|++|+|++|||++++++|+|||++||.+| |
T Consensus 90 PLDvlvl~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~g 169 (199)
T 3ld3_A 90 PVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKD 169 (199)
T ss_dssp CCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTT
T ss_pred ceEEEEecCCCCCCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCHHHHHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999998 7
Q ss_pred ceeEeccccCHHHHHHHHHHHHHHHHH
Q 027710 186 KKVDVEDFLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 186 K~v~~~~~~~~~~A~~vI~~~~~~~~~ 212 (220)
|++++.+|.++++|+++|++|+++|++
T Consensus 170 K~v~v~gw~~~~~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 170 KFVSVGCWQDAASAKELIRSAIIAAKK 196 (199)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHHHHHHC
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999975
No 6
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=2.2e-70 Score=461.19 Aligned_cols=170 Identities=39% Similarity=0.632 Sum_probs=167.8
Q ss_pred CCCCCCCCCCCCceeeccCCCceEEEECCCCC-ceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEe
Q 027710 37 PWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVL 115 (220)
Q Consensus 37 ~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~-~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl 115 (220)
+||+||++++.|+.||| |||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||
T Consensus 1 ~~~~ip~~~~~p~~~nv------vIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl 74 (175)
T 2au7_A 1 SLLNVPAGKDLPEDIYV------VIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVP 74 (175)
T ss_dssp CGGGCCSCSBTTTBEEE------EEEECTTCCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECTTCCCTTSSCCEEEEC
T ss_pred CcccCCCCCCCCCEEEE------EEEecCCCCceeEEEecCCCCEEEeeecCCCCcCCcCcCccCCccCCCCCceEEEEE
Confidence 69999999999999999 999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEecc
Q 027710 116 MQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVED 192 (220)
Q Consensus 116 ~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~ 192 (220)
+++|++|||+++|||||+|+|+|+||+|||||||+.+ ||+|++++|++||+++++++|+|||++||.+| ||++++.+
T Consensus 75 ~~~p~~pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~g 154 (175)
T 2au7_A 75 TPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEG 154 (175)
T ss_dssp CSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEE
T ss_pred CCCCCCCceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHHHHHHHHHHHHHhhCccCCCCeEEcc
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999 99999999
Q ss_pred ccCHHHHHHHHHHHHHHHHH
Q 027710 193 FLPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 193 ~~~~~~A~~vI~~~~~~~~~ 212 (220)
|.++++|+++|++|+++|++
T Consensus 155 w~~~~~A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 155 WENAEAAKAEIVASFERAKN 174 (175)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999986
No 7
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=4.2e-70 Score=458.76 Aligned_cols=169 Identities=41% Similarity=0.687 Sum_probs=161.5
Q ss_pred CCCCCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEec
Q 027710 37 PWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLM 116 (220)
Q Consensus 37 ~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~ 116 (220)
+||+||++++ |+.||| |||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||+
T Consensus 2 ~~~~ip~~~~-p~~~nv------vIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~ 74 (173)
T 2bqx_A 2 NLEKLEVSHD-ADSLCV------VIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLS 74 (173)
T ss_dssp -----CCCEE-TTEEEE------EEEECTTCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEECC
T ss_pred CcccCCCCCC-CCeEEE------EEEECCCCCeEEEEecCCCCEEEeeecCCCCcCcccccccccccCCCCCceEEEEEC
Confidence 8999999999 999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccc
Q 027710 117 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDF 193 (220)
Q Consensus 117 ~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~ 193 (220)
++|++|||+++|||||+|+|+|+||.||||||||++ ||+|+++++++|||++++++|+|||++||.+| ||++++.+|
T Consensus 75 ~~p~~~G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~ 154 (173)
T 2bqx_A 75 DVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGF 154 (173)
T ss_dssp SSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEE
T ss_pred CCCCCCceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHhccccCCCceeeCcC
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999 999999999
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q 027710 194 LPAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 194 ~~~~~A~~vI~~~~~~~~~ 212 (220)
.++++|+++|++|+++|++
T Consensus 155 ~~~~~A~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 155 ENKESAIKVLEKAIKAYQG 173 (173)
T ss_dssp EEHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999964
No 8
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=1.6e-69 Score=455.20 Aligned_cols=166 Identities=40% Similarity=0.630 Sum_probs=164.0
Q ss_pred CCCCCCCCCCCCceeeccCCCceEEEECCCCC-ceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEe
Q 027710 37 PWHDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVL 115 (220)
Q Consensus 37 ~whdip~~~~~p~~~n~~~~~~~VIEIPrgs~-~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl 115 (220)
+||+||++++ |+.||| |||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||
T Consensus 3 ~~~~ip~~~~-p~~~nv------vIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl 75 (173)
T 3d53_A 3 FIKKIKAKAN-NNEINV------IIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVV 75 (173)
T ss_dssp CGGGSCSCSS-TTCEEE------EEEECTTCCSEEEEECTTTCCEEEEEECCSSCCCSSEEEECTTCCCTTSSCCEEEEC
T ss_pred chhhCCCCCC-CCeEEE------EEEeCCCCCceeEEEecCCCCEEEeeecCCCCcCCcccchhhCCccCCCCceEEEEE
Confidence 8999999999 999999 999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEecc
Q 027710 116 MQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVED 192 (220)
Q Consensus 116 ~~~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~ 192 (220)
+++|+.|||+++|||||+|+|+|+||+|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+
T Consensus 76 ~~~p~~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~g 155 (173)
T 3d53_A 76 AHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTG 155 (173)
T ss_dssp CSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEE
T ss_pred CCCccCCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHHcCccCCCcEEEcc
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999 99999999
Q ss_pred ccCHHHHHHHHHHHHHH
Q 027710 193 FLPAEAAIEAIKYSMDL 209 (220)
Q Consensus 193 ~~~~~~A~~vI~~~~~~ 209 (220)
|.++++|+++|++|+++
T Consensus 156 w~~~~~A~~~I~~~~~~ 172 (173)
T 3d53_A 156 WGDKVKAETLIKEGIDR 172 (173)
T ss_dssp EECHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhc
Confidence 99999999999999985
No 9
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=2.7e-69 Score=455.62 Aligned_cols=167 Identities=38% Similarity=0.635 Sum_probs=161.9
Q ss_pred CCCCCCCCCCceeeccCCCceEEEECCCCC-ceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEecC
Q 027710 39 HDLEIGPGAPAVCNCCKSLRQVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 117 (220)
Q Consensus 39 hdip~~~~~p~~~n~~~~~~~VIEIPrgs~-~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~~ 117 (220)
|+||++++. ++||| |||||+||+ +|||+|+++|.|++||++++++.||+|||||||||++||||||||||++
T Consensus 6 h~ip~g~~~-~~vnv------vIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~ 78 (178)
T 3tr4_A 6 FLVSAGKGI-DDFNV------IIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTP 78 (178)
T ss_dssp --CCCEEET-TEEEE------EEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCS
T ss_pred ccCCCCCCC-CEEEE------EEEecCCCCcEEEEEecCCCcEEEEEecCcCccCCccccccCCcccCCCCceEEEEECC
Confidence 999999887 99999 999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEecccc
Q 027710 118 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFL 194 (220)
Q Consensus 118 ~p~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~ 194 (220)
+|++|||+++|||||+|+|+|+||+||||||||++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.
T Consensus 79 ~p~~pG~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~ 158 (178)
T 3tr4_A 79 VPVQPGVLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWE 158 (178)
T ss_dssp SCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEE
T ss_pred CCCCCeeEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccCc
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999 6999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 027710 195 PAEAAIEAIKYSMDLYAS 212 (220)
Q Consensus 195 ~~~~A~~vI~~~~~~~~~ 212 (220)
++++|+++|++|+++|++
T Consensus 159 ~~~~A~~~I~~~~~~~~~ 176 (178)
T 3tr4_A 159 DKEAAKKEFEASIVRFKE 176 (178)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999986
No 10
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=2.2e-70 Score=490.37 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=187.9
Q ss_pred CCCCCCCCcchhhhhcccCCCcccCCCCCCCCCCCCC-ceeeccCCCceEEEECCCCCceEEEecCC-----------CC
Q 027710 12 NSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAP-AVCNCCKSLRQVVEIGKGGKVKYELDKAS-----------GL 79 (220)
Q Consensus 12 ~~~g~~~~~~~r~~~~~~~~~~~~s~whdip~~~~~p-~~~n~~~~~~~VIEIPrgs~~KyE~d~~~-----------g~ 79 (220)
+++|+++|++||++ |...++.+|||||||++++.| .+||| ||||||||++|||+|+++ |.
T Consensus 5 ~~~G~~~t~~~r~~--~~~~g~~~sp~hdIp~~~~~~~~~~nv------VIEIP~gs~~KyEidk~~~~nPIkqd~k~G~ 76 (286)
T 1e9g_A 5 RQIGAKNTLEYKVY--IEKDGKPVSAFHDIPLYADKENNIFNM------VVEIPRWTNAKLEITKEETLNPIIQDTKKGK 76 (286)
T ss_dssp EEEEETTSTTCEEE--EEETTEEECTTTTSCSEEETTTTEEEE------EEEECTTCCBCEEECTTSTTCCEEECEETTE
T ss_pred eeecCCCCcceEEE--EEeCCeecCchhhCCCCCCCCCCEEEE------EEEECCCCCeEEEEccCCCCCcchhhhcCCc
Confidence 56899999999998 666799999999999998865 89999 999999999999999997 78
Q ss_pred eEeeeeccccccCccccCcCcccc------------CCCCCcceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcceEE
Q 027710 80 IKVDRVLYSSVVYPHNYGFIPRTI------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKII 147 (220)
Q Consensus 80 i~~Dr~l~~~~~YP~NYGfIP~T~------------~gDGDPLDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~Kii 147 (220)
+++||++++++.|||||||||||| +|||||||||||+++|++||++++|||||+|+|+|+||+|||||
T Consensus 77 lr~dr~l~~~~~YP~NYGfIPqTledp~~~~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KII 156 (286)
T 1e9g_A 77 LRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVI 156 (286)
T ss_dssp ECBCCEETTCCSCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEE
T ss_pred EEEEeccCCCCCCccCcccCcccccCcccccccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEE
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCh---hHHHHHHHHHHHhhcCCCcee---Ee-ccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 027710 148 AVCADDPEFRHYKDIKELPP---HRLAEIRRFFEDYKKNENKKV---DV-EDFLPAEAAIEAIKYSMDLYASYIVESL 218 (220)
Q Consensus 148 aV~~~dp~~~~i~di~Dl~~---~~l~~I~~fF~~YK~legK~v---~~-~~~~~~~~A~~vI~~~~~~~~~~i~~~~ 218 (220)
||+++||+|++|+|++||++ +++++|+|||++||.+|||++ .+ ++|.++++|+++|++||++|++++.++.
T Consensus 157 aV~~~Dp~~~~i~di~Dl~~~~p~~l~~i~~fF~~YK~leGK~~n~~~~~~~~~~~~~A~~vI~~~~~~~~~l~~~~~ 234 (286)
T 1e9g_A 157 AIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKS 234 (286)
T ss_dssp EEETTSTTGGGCCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEeCCCcccccCCCHHHhchhhHHHHHHHHHHHHHhcCcCCCCcceeEecCcCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999977 899999999999999999984 34 8999999999999999999999987543
No 11
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=1.9e-68 Score=448.77 Aligned_cols=167 Identities=45% Similarity=0.748 Sum_probs=162.5
Q ss_pred CCCCCCCCCceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEecCcc
Q 027710 40 DLEIGPGAPAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEP 119 (220)
Q Consensus 40 dip~~~~~p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~~~p 119 (220)
+||.+++.|+.||| |||||+||++|||+|+++|.|++||++++++.||+|||||||||++||||||||||+++|
T Consensus 2 ~i~~g~~~p~~~nv------vIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p 75 (173)
T 1qez_A 2 KLSPGKNAPDVVNV------LVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQ 75 (173)
T ss_dssp CCCSCTTTTTSEEE------EEEECTTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSC
T ss_pred CcCCCCCCCCeEEE------EEEECCCCCeEEEEecCCCCEEEEeecCCCCcCCccccccccccCCCCCceEEEEECCCC
Confidence 56777777899999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeeeEEeeeCCCCcceEEEEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCH
Q 027710 120 VLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPA 196 (220)
Q Consensus 120 ~~~G~v~~vrviG~l~miD~ge~D~KiiaV~~~--dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~ 196 (220)
+.|||+++|||||+|+|+|+||+|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.++
T Consensus 76 ~~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~ 155 (173)
T 1qez_A 76 LYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSA 155 (173)
T ss_dssp CCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECH
T ss_pred CCCccEEEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 027710 197 EAAIEAIKYSMDLYAS 212 (220)
Q Consensus 197 ~~A~~vI~~~~~~~~~ 212 (220)
++|+++|++|+++|++
T Consensus 156 ~~A~~~I~~~~~~~~~ 171 (173)
T 1qez_A 156 TEAKNRIQLAIKRVSG 171 (173)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999976
No 12
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=5.5e-67 Score=439.35 Aligned_cols=158 Identities=37% Similarity=0.737 Sum_probs=154.1
Q ss_pred ceeeccCCCceEEEECCCCCceEEEecCCCCeEeeeeccccccCccccCcCccccCCCCCcceEEEecCccCCCcceEEE
Q 027710 49 AVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRC 128 (220)
Q Consensus 49 ~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~Dr~l~~~~~YP~NYGfIP~T~~gDGDPLDvlvl~~~p~~~G~v~~v 128 (220)
..||| ||||||||++|||+|+++|.+++||++++++.||+|||||||||++||||||||||+++|++|||+++|
T Consensus 11 ~~~nv------vIEIP~gs~~KyE~Dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPlDvlvl~~~p~~pG~vi~~ 84 (172)
T 1sxv_A 11 MQFDV------TIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAA 84 (172)
T ss_dssp CCEEE------EEEECTTCCEEC-CCTTTCCCCCCEECSSSCCCSSEEEEETTCCCTTSSCCEEEECCSSCCCTTCEEEE
T ss_pred eEEEE------EEEECCCCCeEEEEEcCCCCEEEEeecCCCCCCCcCcCccCCccCCCCCCeEEEEEcCCCcCCceEEEE
Confidence 35788 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeEEeeeCCCCcceEEEEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHHHHHHHHHHH
Q 027710 129 RAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 129 rviG~l~miD~ge~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-gK~v~~~~~~~~~~A~~vI~~~~ 207 (220)
||||+|+|+|+||+||||||||++||+|++++|++|||++++++|+|||++||.+| ||++++.+|.++++|+++|++|+
T Consensus 85 r~iGvl~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~ 164 (172)
T 1sxv_A 85 RPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSV 164 (172)
T ss_dssp EEEEEEEEEETTEECCEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCCCEEEEEeCCCCCccccCChHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHH
Q 027710 208 DLYAS 212 (220)
Q Consensus 208 ~~~~~ 212 (220)
++|++
T Consensus 165 ~~~~~ 169 (172)
T 1sxv_A 165 ERFKA 169 (172)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99986
No 13
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=35.20 E-value=6.3 Score=25.91 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.4
Q ss_pred CccccCcCccccC-----------CCCCcceEE
Q 027710 92 YPHNYGFIPRTIC-----------EDSDPMDVL 113 (220)
Q Consensus 92 YP~NYGfIP~T~~-----------gDGDPLDvl 113 (220)
+||+++=+++|+. .||||||+-
T Consensus 2 ~~~~~~k~~~~~~~~~~R~iy~~~~dgd~~dk~ 34 (45)
T 1jo6_A 2 FIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKR 34 (45)
T ss_dssp CCSSCCCCCCSSSSCSTTSSHHHHHHHHTTTSS
T ss_pred cccccccceeeeccccccccccccccCCccccc
Confidence 4677777778774 489999973
No 14
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=31.73 E-value=44 Score=26.95 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=33.3
Q ss_pred ceEEEecCccCCCcceEEEEEeeeEEeeeCCCCcce---EEEEecCCCCCCCCCCCCCCCh
Q 027710 110 MDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDK---IIAVCADDPEFRHYKDIKELPP 167 (220)
Q Consensus 110 LDvlvl~~~p~~~G~v~~vrviG~l~miD~ge~D~K---iiaV~~~dp~~~~i~di~Dl~~ 167 (220)
-+.||.+++|+.+|+.+.+|+.- -+..|. =++|-..||. .++. +||+
T Consensus 35 ~~givFS~RPl~~~E~~~v~I~~-------~~~~wsG~l~~GvT~~dP~--~l~~--~lP~ 84 (168)
T 2yue_A 35 CRAITFSARPVRINERICVKFAE-------ISNNWNGGIRFGFTSNDPV--TLEG--TLPK 84 (168)
T ss_dssp SCCEEEESSCCCSSCCEEEEEEE-------CCSSSSSCCEEEEESSCGG--GTTT--CCCS
T ss_pred CceEEEECCCCcCCCEEEEEEEe-------ecCCcceeEEEeeeecCHH--HcCC--CCCC
Confidence 46789999999999999999853 223343 5688888884 3432 5554
No 15
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=30.62 E-value=60 Score=24.21 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=38.6
Q ss_pred CceeeccCCCceEEEECCCCCceEEEecCCCCeEe------------e--eeccccccCccccCcCccccC-CCCCcceE
Q 027710 48 PAVCNCCKSLRQVVEIGKGGKVKYELDKASGLIKV------------D--RVLYSSVVYPHNYGFIPRTIC-EDSDPMDV 112 (220)
Q Consensus 48 p~~~n~~~~~~~VIEIPrgs~~KyE~d~~~g~i~~------------D--r~l~~~~~YP~NYGfIP~T~~-gDGDPLDv 112 (220)
...+|. -|- -.|+...|.+.+.+.+=++ + |+++-+ -+.|=--=|++|+ +|||=+|+
T Consensus 19 ~~~Ini------KV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG--~rI~~~~TP~~L~meD~DiID~ 89 (95)
T 2l76_A 19 PRLFPL------KIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGE--TELSPTATPRTLKLGVADIIDC 89 (95)
T ss_dssp CCCEEE------EEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETT--EECCTTSCHHHHTCCSSCEEEE
T ss_pred CCeEEE------EEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECC--cCCCCCCCHhHcCCCCCCEEEE
Confidence 455777 666 5788899999888864111 1 233321 2233334456665 89999999
Q ss_pred EEecC
Q 027710 113 LVLMQ 117 (220)
Q Consensus 113 lvl~~ 117 (220)
+++.+
T Consensus 90 ~~~~~ 94 (95)
T 2l76_A 90 VVLTS 94 (95)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.42 E-value=66 Score=22.09 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 170 l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~ 206 (220)
-++|+++|..|-..+ .+.+.+..|.+.++|.+.|+..
T Consensus 26 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 26 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 467999999984332 1335567899999999888753
No 17
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.06 E-value=72 Score=21.53 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhc-CCC-----ceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKK-NEN-----KKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~-leg-----K~v~~~~~~~~~~A~~vI~~~~ 207 (220)
.-++|+++|..|-. .+. +.+.+..|.+.+.|.+.|++.+
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHcc
Confidence 34678999999986 443 2345567899999998887543
No 18
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.91 E-value=72 Score=23.06 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcC------------CCceeEeccccCHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKN------------ENKKVDVEDFLPAEAAIEAIKY 205 (220)
Q Consensus 170 l~~I~~fF~~YK~l------------egK~v~~~~~~~~~~A~~vI~~ 205 (220)
-++|+++|..|-.. ..+.+.+..|.+.++|.+.|+.
T Consensus 77 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 77 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 46799999998421 1234566789999999988864
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=26.76 E-value=58 Score=21.55 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcC----------CC--ceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~l----------eg--K~v~~~~~~~~~~A~~vI~~~~ 207 (220)
.-++|+++|..|-.. .| +...+..|.+.++|.+.|++.+
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 345789999988421 12 2245667899999999887543
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.91 E-value=95 Score=21.21 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~~ 207 (220)
.-++|+++|..|-..+ .+-+.+..|.+.++|.+.|++.+
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 25 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 3457899999994321 12255678999999999887543
No 21
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.60 E-value=59 Score=22.24 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcC------CCceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~l------egK~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+++|..|-.. .+|.+.+..|.+.++|.+.|+..
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHH
Confidence 346789999999642 24556667899999998888754
No 22
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.04 E-value=1e+02 Score=20.73 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCC----ceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNEN----KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~leg----K~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+.+|..|-.... +...+..|.+.++|.+.|++.
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 34678999999965442 224566899999999888754
No 23
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=1.1e+02 Score=20.76 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcCC-------CceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le-------gK~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+++|..|-..+ .+.+.+..|.+.+.|.+.|+..
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Confidence 3467899999996553 2335566789999998888753
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=23.43 E-value=61 Score=21.33 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 170 l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
-++|+++|..|-... | +...+..|.+.+.|.+.++..
T Consensus 21 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 21 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh
Confidence 467899999984321 2 224566789999999888754
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.23 E-value=81 Score=21.15 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+++|..|-..+ | +.+.+..|.+.++|.+.|+..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 3457999999984321 2 224566889999999888754
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=22.25 E-value=1e+02 Score=20.89 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcC---------C-C--ceeEeccccCHHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKN---------E-N--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 170 l~~I~~fF~~YK~l---------e-g--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
-++|+++|..|-.. + | +...+..|.+.+.|.+.|+..
T Consensus 16 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 16 EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 45789999998421 1 1 335567889999999888754
No 27
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=22.11 E-value=1.5e+02 Score=20.15 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCC-------CceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le-------gK~v~~~~~~~~~~A~~vI~~~~ 207 (220)
.-++|+++|..|-... .+...+..|.+.++|.+.|++.+
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHC
Confidence 3457899999995433 24455668899999998887544
No 28
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=21.93 E-value=86 Score=20.64 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=23.8
Q ss_pred HHHHHHHHHHh----h-------c------CCCceeEeccccCHHHHHHHH
Q 027710 170 LAEIRRFFEDY----K-------K------NENKKVDVEDFLPAEAAIEAI 203 (220)
Q Consensus 170 l~~I~~fF~~Y----K-------~------legK~v~~~~~~~~~~A~~vI 203 (220)
-++|+++|..| - . ...|...+..|.+.+.|.+.+
T Consensus 20 ~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 20 EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred HHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 46789999999 3 1 112445566788999998877
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=21.64 E-value=1.2e+02 Score=20.88 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 170 l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~~ 207 (220)
-++|+++|..|-... .|.+.+..|.+.+.|.+.|+..+
T Consensus 27 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 27 EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 457899999985321 23356678899999998887544
No 30
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=21.54 E-value=66 Score=21.70 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcC---------CC--ceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKN---------EN--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~l---------eg--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+++|..|-.. .| +.+.+..|.+.++|.+.|+..
T Consensus 29 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 29 REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 346799999998321 12 234566788999998888754
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.26 E-value=93 Score=20.89 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~~ 207 (220)
.-++|+++|..|-... | +-+.+..|.+.++|.+.|++.+
T Consensus 18 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 18 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 3457899999884211 1 2255678899999998887543
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.03 E-value=78 Score=21.63 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIK 204 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~ 204 (220)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|+
T Consensus 23 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 23 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 3457899999884211 23356677899999988885
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.96 E-value=1.3e+02 Score=20.41 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcC----------CC--ceeEeccccCHHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 170 l~~I~~fF~~YK~l----------eg--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|++.
T Consensus 22 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 22 EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh
Confidence 45799999998421 11 235667899999999888653
No 34
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.86 E-value=95 Score=21.63 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCC---------CceeEeccccCHHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE---------NKKVDVEDFLPAEAAIEAIKYSM 207 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le---------gK~v~~~~~~~~~~A~~vI~~~~ 207 (220)
.-++|+++|..|-... .+.+.+..|.+.++|.+.|+..+
T Consensus 35 t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 35 RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 3467899999985321 13355677899999998887543
No 35
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=20.65 E-value=74 Score=23.24 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=15.9
Q ss_pred ccccCccccCcCccccCCCCCcceEEE
Q 027710 88 SSVVYPHNYGFIPRTICEDSDPMDVLV 114 (220)
Q Consensus 88 ~~~~YP~NYGfIP~T~~gDGDPLDvlv 114 (220)
.+..+|.+|+. .|||-+||++
T Consensus 61 dp~~tp~Dlem------eD~D~IDvmL 81 (82)
T 3goe_A 61 DPNDQVQSTEL------EDEDQVSVVL 81 (82)
T ss_dssp CTTSBGGGSSC------CTTCEEEEEC
T ss_pred CccCChhhhCC------cCCceeeeee
Confidence 34567777775 6999999974
No 36
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=20.48 E-value=59 Score=22.89 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCC----CceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+++|..|-..+ .+.+.+..|.+.+.|.+.|++.
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 82 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGE 82 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHc
Confidence 4678999999986554 2345566788888888887653
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=20.40 E-value=85 Score=20.44 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 027710 170 LAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 170 l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
-++|+++|..|-... | +...+..|.+.++|.+.++..
T Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 15 DETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 457899999884321 2 224556789999998888753
No 38
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=70 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKY 205 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~ 205 (220)
.-++|+++|..|-... | +-+.+..|.+.+.|.+.|+.
T Consensus 29 t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 3567899999994221 2 22456678888998888765
No 39
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=78 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCC---------C--ceeEeccccCHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKNE---------N--KKVDVEDFLPAEAAIEAIK 204 (220)
Q Consensus 169 ~l~~I~~fF~~YK~le---------g--K~v~~~~~~~~~~A~~vI~ 204 (220)
.-++|+++|..| ... | +-+.+..|.+.++|.+.|+
T Consensus 23 t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 23 TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 345799999998 332 2 2245667889999988876
No 40
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=20.27 E-value=1.3e+02 Score=22.25 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCceeEeccc-cCHHHHHHHHHHHH
Q 027710 162 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDF-LPAEAAIEAIKYSM 207 (220)
Q Consensus 162 i~Dl~~~~l~~I~~fF~~YK~legK~v~~~~~-~~~~~A~~vI~~~~ 207 (220)
+..+...+|+.|.+|+.+.+.-..+...+..| .+.+.+.++|..|.
T Consensus 62 lpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAn 108 (112)
T 1vcb_B 62 FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAAN 108 (112)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHH
Confidence 33577899999999999888543333334456 46777888887663
No 41
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.26 E-value=76 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcC-------------CCce--eEeccccCHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKN-------------ENKK--VDVEDFLPAEAAIEAIKY 205 (220)
Q Consensus 169 ~l~~I~~fF~~YK~l-------------egK~--v~~~~~~~~~~A~~vI~~ 205 (220)
.-++|++||..|-.. .|+. +.+..|.+.++|.+.|+.
T Consensus 36 te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 36 TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 456799999999432 2332 456789999999988864
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.18 E-value=1e+02 Score=21.13 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcC----------CC--ceeEeccccCHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKY 205 (220)
Q Consensus 169 ~l~~I~~fF~~YK~l----------eg--K~v~~~~~~~~~~A~~vI~~ 205 (220)
.-++|+++|..|-.. .| +-+.+..|.+.++|.+.|+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 28 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 345789999999421 11 22556678999999988875
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.00 E-value=1.3e+02 Score=20.63 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcC-----------CC--ceeEeccccCHHHHHHHHHHH
Q 027710 169 RLAEIRRFFEDYKKN-----------EN--KKVDVEDFLPAEAAIEAIKYS 206 (220)
Q Consensus 169 ~l~~I~~fF~~YK~l-----------eg--K~v~~~~~~~~~~A~~vI~~~ 206 (220)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 28 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 345799999998421 11 335667899999999888754
Done!